-// Copyright (C) 2007-2019 CEA/DEN, EDF R&D, OPEN CASCADE
+// Copyright (C) 2007-2021 CEA/DEN, EDF R&D, OPEN CASCADE
//
// Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN,
// CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS
string cmdFile = buildCommandFile(job);
// define command to submit batch
- string subCommand = string("cd ") + workDir + "; sbatch " + cmdFile;
+ string subCommand = string("bash -l -c \\\"cd ") + workDir + "; sbatch " + cmdFile + "\\\"";
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
command += " 2>&1";
LOG(command);
void BatchManager_Slurm::deleteJob(const JobId & jobid)
{
// define command to delete job
- string subCommand = "scancel " + jobid.getReference();
+ string subCommand = string("bash -l -c \\\"scancel ") + jobid.getReference() + "\\\"";
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
LOG(command);
JobInfo BatchManager_Slurm::queryJob(const JobId & jobid)
{
// First try to query the job with "squeue" command
- string subCommand = "squeue -h -o %T -j " + jobid.getReference() + " 2>/dev/null";
+ string subCommand = string("bash -l -c \\\"squeue -h -o %T -j ") + jobid.getReference() + " 2>/dev/null" + "\\\"";
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
LOG(command);
string output;
// If "squeue" failed, the job may be finished. In this case, try to query the job with
// "sacct".
- if (not found) {
- string subCommand = "sacct -X -o State%-10 -n -j " + jobid.getReference();
+ if (! found) {
+ string subCommand = string("bash -l -c \\\"sacct -X -o State%-10 -n -j ") + jobid.getReference() + "\\\"";
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
LOG(command);
string output;