#include "BatchManager_PBS.hxx"
#include "JobInfo_PBS.hxx"
+#include "Log.hxx"
using namespace std;
string subCommand = string("cd ") + workDir + "; qsub " + scriptFile;
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
command += " 2>&1";
- cerr << command.c_str() << endl;
+ LOG(command);
// submit job
string output;
int status = Utils::getCommandOutput(command, output);
- cout << output;
+ LOG(output);
if (status != 0) throw RunTimeException("Can't submit job, error was: " + output);
// normally output contains only id of submitted job, we just need to remove the final \n
// define command to delete batch
string subCommand = string("qdel ") + iss.str();
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
- cerr << command.c_str() << endl;
+ LOG(command);
status = system(command.c_str());
if (status)
throw RunTimeException("Error of connection on remote host");
- cerr << "jobId = " << ref << "killed" << endl;
+ LOG("jobId = " << ref << "killed");
}
// Methode pour le controle des jobs : renvoie l'etat du job
// define command to query batch
string subCommand = string("qstat -f ") + iss.str();
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
- cerr << command.c_str() << endl;
+ LOG(command);
string output;
int status = Utils::getCommandOutput(command, output);
tempOutputFile.flush();
tempOutputFile.close();
- cerr << "Batch script file generated is: " << TmpFileName.c_str() << endl;
+ LOG("Batch script file generated is: " << TmpFileName.c_str());
string remoteFileName = rootNameToExecute + "_Batch.sh";
int status = _protocol.copyFile(TmpFileName, "", "",