From: Konstantin Leontev Date: Wed, 7 Feb 2024 09:48:43 +0000 (+0000) Subject: [bos #40653][CEA] New mesh import export formats with meshio. X-Git-Url: http://git.salome-platform.org/gitweb/?p=modules%2Fsmesh.git;a=commitdiff_plain;ds=sidebyside [bos #40653][CEA] New mesh import export formats with meshio. --- diff --git a/doc/gui/input/importing_exporting_meshes.rst b/doc/gui/input/importing_exporting_meshes.rst index fe9aa27f1..3f4f12072 100644 --- a/doc/gui/input/importing_exporting_meshes.rst +++ b/doc/gui/input/importing_exporting_meshes.rst @@ -5,6 +5,10 @@ Importing and exporting meshes ****************************** +============================== +File formats +============================== + In MESH there is a functionality allowing import/export of meshes in the following formats: * **MED**, @@ -16,6 +20,52 @@ In MESH there is a functionality allowing import/export of meshes in the followi You can also export a group as a whole mesh. +------------------------------ +Additional file formats with meshio +------------------------------ + +It is possible to use additional file formats using **meshio** library. +However, there are some restrictions because of way it uses in Salome. The main points here are: + +* We use intermediate MED file to communicate between Salome and **meshio**. +* Convertion to the target format performs **meshio convert** command, using given **MED** file. +* Current **meshio** version doesn't work well with all tested file formats. + +Anyway, you can try to import/export meshes with **meshio** using following formats: + +* Abaqus (*.inp) +* ANSYS msh (*.msh) +* AVS-UCD (*.avs) +* CGNS (*.cgns) +* DOLFIN XML (*.xml) +* Exodus (*.e *.exo) +* FLAC3D (*.f3grid) +* Gmsh 2.2, 4.0, and 4.1 (*.msh) +* H5M (*.h5m) +* Kratos/MDPA (*.mdpa) +* MED/Salome (*.med) +* Medit (*.mesh *.meshb) +* Nastran (*.bdf *fem *.nas) +* Netgen(*.vol *.vol.gz) +* OBJ (*.obj) +* OFF (*.off) +* PERMAS (*.post *.post.gz *.dato *.dato.gz) +* PLY (*.ply) +* STL (*.stl) +* SU2 (*.su2) +* SVG, 2D output only (*.svg) +* Tecplot (*.dat) +* TetGen (*.node *.ele) +* UGRID (*.ugrid) +* VTK (*.vtk) +* VTU (*.vtu) +* WKT, TIN (*.wkt) +* XDMF (*.xdmf *.xmf) + +============================== +Import +============================== + *To import a mesh:* #. From the **File** menu choose the **Import** item, from its sub-menu select the corresponding format (MED, UNV, STL, GMF and CGNS) of the file containing your mesh. @@ -25,6 +75,10 @@ You can also export a group as a whole mesh. .. image:: ../images/meshimportmesh.png :align: center +============================== +Export +============================== + *To export a mesh or a group:* #. Select the object you wish to export. diff --git a/idl/SMESH_Gen.idl b/idl/SMESH_Gen.idl index 236803975..f3bf7f454 100644 --- a/idl/SMESH_Gen.idl +++ b/idl/SMESH_Gen.idl @@ -294,6 +294,14 @@ module SMESH in boolean theMakeRequiredGroups, out SMESH::ComputeError theError) raises ( SALOME::SALOME_Exception ); + + /*! + * Create a mesh and import data from any file supported by meshio library + */ + mesh_array CreateMeshesFromMESHIO(in string theFileName, + out SMESH::DriverMED_ReadStatus theStatus) + raises (SALOME::SALOME_Exception); + /*! * Create a dual mesh of a Tetrahedron mesh * \param mesh - TetraHedron mesh to create dual from diff --git a/idl/SMESH_Mesh.idl b/idl/SMESH_Mesh.idl index fabf32343..9a888182c 100644 --- a/idl/SMESH_Mesh.idl +++ b/idl/SMESH_Mesh.idl @@ -712,6 +712,17 @@ module SMESH in double ZTolerance, in boolean saveNumbers) raises (SALOME::SALOME_Exception); + /*! + * Export a [part of] Mesh to a file with meshio library using an intermediate MED file + * @params + * - meshPart : a part of mesh to store + * - fileName : name of the MED file + * - selectedFilter : filter string selected by user in a file dialog. + */ + void ExportPartToMESHIO(in SMESH_IDSource meshPart, + in string fileName, + in string selectedFilter) raises (SALOME::SALOME_Exception); + long long ExportPartToMEDCoupling( in SMESH_IDSource meshPart, in boolean auto_groups, in boolean autoDimension, diff --git a/src/SMESHGUI/CMakeLists.txt b/src/SMESHGUI/CMakeLists.txt index 862ef5de0..6d83cf954 100644 --- a/src/SMESHGUI/CMakeLists.txt +++ b/src/SMESHGUI/CMakeLists.txt @@ -161,6 +161,7 @@ SET(_moc_HEADERS SMESHGUI_InteractiveOp.h SMESHGUI_CreateDualMeshDlg.h SMESHGUI_CreateDualMeshOp.h + SMESHGUI_Meshio.h ) # header files / no moc processing @@ -290,6 +291,7 @@ SET(_other_SOURCES SMESHGUI_InteractiveOp.cxx SMESHGUI_CreateDualMeshDlg.cxx SMESHGUI_CreateDualMeshOp.cxx + SMESHGUI_Meshio.cxx ) # sources / to compile diff --git a/src/SMESHGUI/SMESHGUI.cxx b/src/SMESHGUI/SMESHGUI.cxx index bbf36ce1e..5f1d4549a 100644 --- a/src/SMESHGUI/SMESHGUI.cxx +++ b/src/SMESHGUI/SMESHGUI.cxx @@ -70,6 +70,7 @@ #include "SMESHGUI_Measurements.h" #include "SMESHGUI_MergeDlg.h" #include "SMESHGUI_MeshInfo.h" +#include "SMESHGUI_Meshio.h" #include "SMESHGUI_MeshOp.h" #include "SMESHGUI_MeshOrderOp.h" #include "SMESHGUI_MeshPatternDlg.h" @@ -213,6 +214,7 @@ namespace void Control( int theCommandID ); // Definitions + //================================================================================ /*! * \brief Reads meshes from file @@ -251,6 +253,12 @@ namespace filter.append( QObject::tr( "GMF_ASCII_FILES_FILTER" ) + " (*.mesh)" ); filter.append( QObject::tr( "GMF_BINARY_FILES_FILTER") + " (*.meshb)" ); } + else if (theCommandID == SMESHOp::OpImportMESHIO) { + if (!SMESHGUI_Meshio::IsMeshioInstalled()) + return; + + filter = SMESHGUI_Meshio::GetImportFileFilter(); + } QString anInitialPath = ""; if ( SUIT_FileDlg::getLastVisitedPath().isEmpty() ) @@ -366,11 +374,20 @@ namespace } break; } + case SMESHOp::OpImportMESHIO: + { + aMeshes = SMESHGUI_Meshio::ImportMesh(theComponentMesh, filename, errors); + break; + } } } catch ( const SALOME::SALOME_Exception& S_ex ) { - errors.append( QString( "%1 :\n\t%2" ).arg( filename ). - arg( QObject::tr( "SMESH_ERR_UNKNOWN_IMPORT_ERROR" ) ) ); + const QString exText(S_ex.details.text); + if (exText.startsWith("MESHIO")) + errors.append('\n' + exText); + else + errors.append( QString( "%1 :\n\t%2" ).arg( filename ). + arg( QObject::tr( "SMESH_ERR_UNKNOWN_IMPORT_ERROR" ) ) ); } for ( int i = 0, iEnd = aMeshes->length(); i < iEnd; i++ ) @@ -440,8 +457,14 @@ namespace theCommandID == SMESHOp::OpPopupExportCGNS ); const bool isGMF = ( theCommandID == SMESHOp::OpExportGMF || theCommandID == SMESHOp::OpPopupExportGMF ); + const bool isMESHIO = (theCommandID == SMESHOp::OpExportMESHIO); + + if (isMESHIO && !SMESHGUI_Meshio::IsMeshioInstalled()) + { + return; + } - const bool multiMeshSupported = ( isMED || isCGNS ); // file can hold several meshes + const bool multiMeshSupported = isMED || isCGNS || isMESHIO; // file can hold several meshes if ( selected.Extent() == 0 || ( selected.Extent() > 1 && !multiMeshSupported )) return; SUIT_ResourceMgr* resMgr = SUIT_Session::session()->resourceMgr(); @@ -517,7 +540,7 @@ namespace SMESH::SMESH_Mesh_var aMesh = aMeshOrGroup->GetMesh(); QString aMeshName = (*aMeshIter).second; - if ( isMED || isCGNS ) // formats where group names must be unique + if (isMED || isCGNS || isMESHIO) // formats where group names must be unique { // check for equal group names within each mesh for( aMeshIter = aMeshList.begin(); aMeshIter != aMeshList.end(); aMeshIter++ ) { @@ -627,6 +650,7 @@ namespace // Get parameters of export operation QString aFilename; + QString aSelectedFilter; // for meshio to get a filter selected by user int aFormat =-1; // for MED version used for write bool isOkToWrite = true; // to check MED file version compatibility before adding a mesh in an existing file @@ -872,6 +896,14 @@ namespace delete zTolWdg; delete fd; } + else if (isMESHIO) + { + if (SMESHGUI_Meshio::CheckMeshCount(aMeshList)) + { + aFilename = SMESHGUI_Meshio::GetFileName(aSelectedFilter); + MESSAGE("aSelectedFilter: " << aSelectedFilter.toStdString()); + } + } else { return; @@ -954,16 +986,28 @@ namespace toCreateGroups = true; aMesh->ExportGMF( aMeshOrGroup, aFilename.toUtf8().data(), toCreateGroups ); } + else if (isMESHIO) + { + SMESHGUI_Meshio::ExportMesh(aMeshList, aFilename, aSelectedFilter); + } } catch (const SALOME::SALOME_Exception& S_ex) { wc.suspend(); + const QString exText(S_ex.details.text); + if ( S_ex.details.type == SALOME::COMM && // communicate about too large mesh strncmp( "format=", S_ex.details.sourceFile.in(), 7 ) == 0 ) SUIT_MessageBox::critical(SMESHGUI::desktop(), QObject::tr("SMESH_WRN_WARNING"), QObject::tr(S_ex.details.text.in() )); + else if (exText.startsWith("MESHIO")) + { + SUIT_MessageBox::warning(SMESHGUI::desktop(), + QObject::tr("SMESH_WRN_WARNING"), + QObject::tr("SMESH_EXPORT_FAILED_SHORT") + "\n\n" + exText); + } else SUIT_MessageBox::warning(SMESHGUI::desktop(), QObject::tr("SMESH_WRN_WARNING"), @@ -2573,6 +2617,7 @@ bool SMESHGUI::OnGUIEvent( int theCommandID ) case SMESHOp::OpImportSTL: case SMESHOp::OpImportCGNS: case SMESHOp::OpImportGMF: + case SMESHOp::OpImportMESHIO: case SMESHOp::OpPopupImportDAT: case SMESHOp::OpPopupImportUNV: case SMESHOp::OpPopupImportMED: @@ -2609,6 +2654,7 @@ bool SMESHGUI::OnGUIEvent( int theCommandID ) case SMESHOp::OpExportSTL: case SMESHOp::OpExportCGNS: case SMESHOp::OpExportGMF: + case SMESHOp::OpExportMESHIO: case SMESHOp::OpPopupExportDAT: case SMESHOp::OpPopupExportMED: case SMESHOp::OpPopupExportUNV: @@ -4152,6 +4198,7 @@ void SMESHGUI::initialize( CAM_Application* app ) createSMESHAction( SMESHOp::OpImportCGNS, "IMPORT_CGNS" ); #endif createSMESHAction( SMESHOp::OpImportGMF, "IMPORT_GMF" ); + createSMESHAction( SMESHOp::OpImportMESHIO, "IMPORT_MESHIO" ); createSMESHAction( SMESHOp::OpPopupImportUNV, "IMPORT_UNV"); createSMESHAction( SMESHOp::OpPopupImportMED, "IMPORT_MED"); createSMESHAction( SMESHOp::OpPopupImportSTL, "IMPORT_STL" ); @@ -4168,6 +4215,7 @@ void SMESHGUI::initialize( CAM_Application* app ) createSMESHAction( SMESHOp::OpExportCGNS, "CGNS"); #endif createSMESHAction( SMESHOp::OpExportGMF, "GMF" ); + createSMESHAction( SMESHOp::OpExportMESHIO, "EXPORT_MESHIO" ); createSMESHAction( SMESHOp::OpPopupExportDAT, "DAT" ); createSMESHAction( SMESHOp::OpPopupExportMED, "MED" ); createSMESHAction( SMESHOp::OpPopupExportUNV, "UNV" ); @@ -4417,6 +4465,7 @@ void SMESHGUI::initialize( CAM_Application* app ) transfId = createMenu( tr( "MEN_TRANSF" ), modifyId, 405 ), basicPropId = createMenu( tr( "MEN_BASIC_PROPERTIES" ), measureId, -1, 10 ); + // Import menu //createMenu( SMESHOp::OpImportDAT, importId, -1 ); createMenu( SMESHOp::OpImportUNV, importId, -1 ); createMenu( SMESHOp::OpImportMED, importId, -1 ); @@ -4425,6 +4474,9 @@ void SMESHGUI::initialize( CAM_Application* app ) createMenu( SMESHOp::OpImportCGNS, importId, -1 ); #endif createMenu( SMESHOp::OpImportGMF, importId, -1 ); + createMenu( SMESHOp::OpImportMESHIO, importId, -1 ); // formats supported by meshio lib + + // Export menu createMenu( SMESHOp::OpExportDAT, exportId, -1 ); createMenu( SMESHOp::OpExportMED, exportId, -1 ); createMenu( SMESHOp::OpExportUNV, exportId, -1 ); @@ -4433,6 +4485,7 @@ void SMESHGUI::initialize( CAM_Application* app ) createMenu( SMESHOp::OpExportCGNS, exportId, -1 ); #endif createMenu( SMESHOp::OpExportGMF, exportId, -1 ); + createMenu( SMESHOp::OpExportMESHIO, exportId, -1 ); // formats supported by meshio lib createMenu( separator(), fileId, 10 ); createMenu( SMESHOp::OpDelete, editId, -1 ); @@ -4854,6 +4907,7 @@ void SMESHGUI::initialize( CAM_Application* app ) #endif createPopupItem( SMESHOp::OpPopupExportGMF, OB, mesh_group, only_one_non_empty, anId ); createPopupItem( SMESHOp::OpPopupExportDAT, OB, mesh_group, only_one_non_empty, anId ); + createPopupItem( SMESHOp::OpExportMESHIO, OB, mesh_group, only_one_non_empty, anId ); anId = popupMgr()->insert( tr( "MEN_IMPORT" ), -1, -1 ); // IMPORT submenu createPopupItem( SMESHOp::OpPopupImportMED, OB, smesh, "", anId ); diff --git a/src/SMESHGUI/SMESHGUI_Meshio.cxx b/src/SMESHGUI/SMESHGUI_Meshio.cxx new file mode 100644 index 000000000..048dd4ac3 --- /dev/null +++ b/src/SMESHGUI/SMESHGUI_Meshio.cxx @@ -0,0 +1,267 @@ +// Copyright (C) 2007-2024 CEA, EDF, OPEN CASCADE +// +// Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN, +// CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS +// +// This library is free software; you can redistribute it and/or +// modify it under the terms of the GNU Lesser General Public +// License as published by the Free Software Foundation; either +// version 2.1 of the License, or (at your option) any later version. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// Lesser General Public License for more details. +// +// You should have received a copy of the GNU Lesser General Public +// License along with this library; if not, write to the Free Software +// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +// +// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com +// + +// SMESH SMESHGUI : support of import / export with meshio library +// File : SMESHGUI_Meshio.h +// Author : Konstantin Leontev, Open CASCADE S.A.S. +// +#include "SMESHGUI_Meshio.h" +#include "SMESH_Meshio.h" + +// SMESH includes +#include "SMESHGUI.h" +#include "SMESHGUI_FieldSelectorWdg.h" + +// SALOME GUI includes +#include +#include +#include + +// SALOME KERNEL includes +#include + +// Qt +#include + + +/*! + Constructor +*/ +SMESHGUI_Meshio::SMESHGUI_Meshio() +{ +} + +/*! + Destructor +*/ +SMESHGUI_Meshio::~SMESHGUI_Meshio() +{ +} + +/*! + Check and warn about exporting many shapes +*/ +bool SMESHGUI_Meshio::CheckMeshCount(const meshList& aMeshList) +{ + if (aMeshList.size() == 1) + { + return true; + } + else if (!aMeshList.size()) + { + // We shouldn't get here, but... + MESSAGE("Error: empty mesh list. Export canceled."); + return false; + } + + const bool isOk = SUIT_MessageBox::warning( + SMESHGUI::desktop(), + QObject::tr("SMESH_WARNING"), + QObject::tr("SMESH_EXPORT_MESHIO_ONLY_MESH"), + SUIT_MessageBox::Yes | + SUIT_MessageBox::No, + SUIT_MessageBox::No) == SUIT_MessageBox::Yes; + + return isOk; +} + +/*! + Import mesh through an intermediate MED file +*/ +SMESH::mesh_array_var SMESHGUI_Meshio::ImportMesh( + SMESH::SMESH_Gen_ptr theComponentMesh, const QString& filename, QStringList& errors) +{ + SMESH::DriverMED_ReadStatus res; + SMESH::mesh_array_var aMeshes = theComponentMesh->CreateMeshesFromMESHIO(filename.toUtf8().constData(), res); + if (res != SMESH::DRS_OK) + { + errors.append(QString("%1 :\n\t%2").arg(filename).arg( + QObject::tr(QString("SMESH_DRS_%1").arg(res).toLatin1().data()))); + } + + return aMeshes; +} + +/*! + Returns a filter for Import File dialog +*/ +const QStringList& SMESHGUI_Meshio::GetImportFileFilter() +{ + auto addAllFiles = []() -> QStringList + { + QStringList filter = GetExportFileFilter(); + + // Remove SVG because it works only for export + const int svgIndex = filter.indexOf(QRegExp("^SVG.+")); + if (svgIndex >= 0) + { + filter.removeAt(svgIndex); + } + + filter << QObject::tr("ALL_FILES_FILTER") + " (*)"; + + return filter; + }; + + static const QStringList filter = addAllFiles(); + return filter; +} + +/*! + Returns a filter for Export File dialog +*/ +const QStringList& SMESHGUI_Meshio::GetExportFileFilter() +{ + static const QStringList filter = { + "Abaqus (*.inp)", + "ANSYS msh (*.msh)", + "AVS-UCD (*.avs)", + "CGNS (*.cgns)", + "DOLFIN XML (*.xml)", + "Exodus (*.e *.exo)", + "FLAC3D (*.f3grid)", + "Gmsh 2.2 (*.msh)", + "Gmsh 4.0, and 4.1 (*.msh)", + "H5M (*.h5m)", + "Kratos/MDPA (*.mdpa)", + "MED/Salome (*.med)", + "Medit (*.mesh *.meshb)", + "Nastran (*.bdf *fem *.nas)", + "Netgen(*.vol *.vol.gz)", + "OBJ (*.obj)", + "OFF (*.off)", + "PERMAS (*.post *.post.gz *.dato *.dato.gz)", + "PLY (*.ply)", + "STL (*.stl)", + "SU2 (*.su2)", + "SVG, 2D output only (*.svg)", + "Tecplot (*.dat)", + "TetGen (*.node *.ele)", + "UGRID (*.ugrid)", + "VTK (*.vtk)", + "VTU (*.vtu)", + "WKT, TIN (*.wkt)", + "XDMF (*.xdmf *.xmf)" + }; + + return filter; +} + +/*! + Export mesh through an intermediate MED file +*/ +void SMESHGUI_Meshio::ExportMesh(const meshList& aMeshList, const QString& targetFileName, const QString& selectedFilter) +{ + // Helper for indexed naming of the target files. + // We need to save into separated files because meshio doesn't + // support reading more than one mesh from a MED file. + // Look at src/meshio/med/_med.py in meshio git repo for a reference. + auto indexedFileName = [](const QString& targetFileName, const int index) -> QString + { + QString indexedFileName = targetFileName; + + const int lastIndex = indexedFileName.lastIndexOf("."); + indexedFileName.insert(lastIndex, "_" + QString::number(index)); + + return indexedFileName; + }; + + // Trim an extension from the filter like in example: 'VTK (.vtk)' => 'VTK' + auto getFilterWithoutExt = [](const QString& selectedFilter) -> QString + { + // Find the start index for an extension in the filter string + const int index = selectedFilter.indexOf('('); + if (index != -1) + { + const QString filterWithoutExt = selectedFilter.left(index); + return filterWithoutExt.trimmed(); + } + + return selectedFilter; + }; + + // Iterate all the meshes from a list + auto aMeshIter = aMeshList.begin(); + for(int aMeshIndex = 0; aMeshIter != aMeshList.end(); aMeshIter++, aMeshIndex++) + { + SMESH::SMESH_IDSource_var aMeshOrGroup = (*aMeshIter).first; + SMESH::SMESH_Mesh_var aMeshItem = aMeshOrGroup->GetMesh(); + + // Exprort this part. + aMeshItem->ExportPartToMESHIO( + aMeshOrGroup, // mesh part + (aMeshIndex ? indexedFileName(targetFileName, aMeshIndex) : targetFileName).toUtf8().data(), + getFilterWithoutExt(selectedFilter).toLatin1().data() + ); + } +} + +/*! + Opens file dialog and returns a choosen target name +*/ +QString SMESHGUI_Meshio::GetFileName(QString& selectedFilter, const bool isOpen/* = false*/) +{ + // Get a target directory name + QString anInitialPath = SUIT_FileDlg::getLastVisitedPath(); + if (anInitialPath.isEmpty()) + anInitialPath = QDir::currentPath(); + + // Return a target file name + return SUIT_FileDlg::getFileName( + SMESHGUI::desktop(), + anInitialPath, + GetExportFileFilter(), + selectedFilter, + QObject::tr("SMESH_EXPORT_MESH"), + isOpen + ); +} + +/*! + Returns true if meshio package is installed +*/ +bool SMESHGUI_Meshio::IsMeshioInstalled() +{ + auto IsAbleToCallMeshio = []() -> bool + { + // Try to call meshio to check if it's present + const std::string cmd = + SMESH_Meshio::IsModernPythonVersion() ? "meshio --version" : "meshio-info --version"; + + const int status = system(cmd.c_str()); + MESSAGE("status: " << status); + + return status == 0; + }; + + static const bool isInstalled = IsAbleToCallMeshio(); + if (!isInstalled) + { + SUIT_MessageBox::warning( + SMESHGUI::desktop(), + QObject::tr("SMESH_WARNING"), + QObject::tr("SMESH_MESHIO_NOT_INSTALLED") + ); + } + + return isInstalled; +} diff --git a/src/SMESHGUI/SMESHGUI_Meshio.h b/src/SMESHGUI/SMESHGUI_Meshio.h new file mode 100644 index 000000000..b54a53533 --- /dev/null +++ b/src/SMESHGUI/SMESHGUI_Meshio.h @@ -0,0 +1,64 @@ +// Copyright (C) 2007-2024 CEA, EDF, OPEN CASCADE +// +// Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN, +// CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS +// +// This library is free software; you can redistribute it and/or +// modify it under the terms of the GNU Lesser General Public +// License as published by the Free Software Foundation; either +// version 2.1 of the License, or (at your option) any later version. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// Lesser General Public License for more details. +// +// You should have received a copy of the GNU Lesser General Public +// License along with this library; if not, write to the Free Software +// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +// +// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com +// + +// SMESH SMESHGUI : support of import / export with meshio library +// File : SMESHGUI_Meshio.h +// Author : Konstantin Leontev, Open CASCADE S.A.S. +// +#ifndef SMESHGUI_MESHIO_H +#define SMESHGUI_MESHIO_H + +#include "SMESH_SMESHGUI.hxx" + +#include +#include + +// IDL includes +#include +#include CORBA_CLIENT_HEADER(SMESH_Mesh) +#include CORBA_SERVER_HEADER(SMESH_Gen) + +class QStringList; + +class SMESHGUI_EXPORT SMESHGUI_Meshio +{ + using meshList = QList>; + +public: + SMESHGUI_Meshio(); + virtual ~SMESHGUI_Meshio(); + + static void ExportMesh( + const meshList& aMeshList, const QString& targetFileName, const QString& selectedFilter); + static SMESH::mesh_array_var ImportMesh( + SMESH::SMESH_Gen_ptr theComponentMesh, const QString& filename, QStringList& errors); + + static const QStringList& GetImportFileFilter(); + static const QStringList& GetExportFileFilter(); + + static QString GetFileName(QString& selectedFilter, const bool isOpen = false); + static bool CheckMeshCount(const meshList& aMeshList); + + static bool IsMeshioInstalled(); +}; + +#endif // SMESHGUI_MESHIO_H diff --git a/src/SMESHGUI/SMESHGUI_Operations.h b/src/SMESHGUI/SMESHGUI_Operations.h index bdf6e7382..9b9ee1425 100644 --- a/src/SMESHGUI/SMESHGUI_Operations.h +++ b/src/SMESHGUI/SMESHGUI_Operations.h @@ -41,6 +41,7 @@ namespace SMESHOp { OpImportSTL = 1103, // MENU FILE - IMPORT - STL FILE OpImportCGNS = 1104, // MENU FILE - IMPORT - CGNS FILE OpImportGMF = 1106, // MENU FILE - IMPORT - GMF FILE + OpImportMESHIO = 1107, // MENU FILE - IMPORT - other formats... (meshio) OpPopupImportDAT = 1120, // POPUP MENU - IMPORT - DAT FILE OpPopupImportUNV = 1121, // POPUP MENU - IMPORT - UNV FILE OpPopupImportMED = 1122, // POPUP MENU - IMPORT - MED FILE @@ -54,6 +55,7 @@ namespace SMESHOp { OpExportSTL = 1203, // MENU FILE - EXPORT - STL FILE OpExportCGNS = 1204, // MENU FILE - EXPORT - CGNS FILE OpExportGMF = 1206, // MENU FILE - EXPORT - GMF FILE + OpExportMESHIO = 1207, // MENU FILE - EXPORT - other formats... (meshio) OpPopupExportDAT = 1210, // POPUP MENU - EXPORT - DAT FILE OpPopupExportMED = 1211, // POPUP MENU - EXPORT - MED FILE OpPopupExportUNV = 1212, // POPUP MENU - EXPORT - UNV FILE diff --git a/src/SMESHGUI/SMESH_msg_en.ts b/src/SMESHGUI/SMESH_msg_en.ts index 8c6f0359b..5e07a0d31 100644 --- a/src/SMESHGUI/SMESH_msg_en.ts +++ b/src/SMESHGUI/SMESH_msg_en.ts @@ -888,6 +888,14 @@ MEN_GMF GMF file + + MEN_IMPORT_MESHIO + other formats... (meshio) + + + MEN_EXPORT_MESHIO + other formats... (meshio) + MEN_MERGE Merge Nodes @@ -1971,6 +1979,10 @@ so that the application may crash. Do you wish to continue visualization? + + SMESH_EXPORT_FAILED_SHORT + Mesh export failed. + SMESH_EXPORT_MED_DUPLICATED_GRP There are duplicated group names in mesh "%1". @@ -2002,6 +2014,22 @@ Overwrite the file? meshes with the following names: %1 The result file may be incorrect. Overwrite the file? + + + SMESH_EXPORT_MESHIO_ONLY_MESH + Current implementation uses export through intermediate MED file. +However, meshio does not support reading MED files with more than one mesh. +Selected meshes will be saved into separated files. + +Do you want to continue? + + + SMESH_MESHIO_NOT_INSTALLED + Meshio is not installed! +Operation will be canceled. + +Try to install meshio with a command: +pip install meshio[all] EXPORT_NOT_SUPPORTED diff --git a/src/SMESHGUI/SMESH_msg_fr.ts b/src/SMESHGUI/SMESH_msg_fr.ts index 9d00671ae..c6c37fef5 100644 --- a/src/SMESHGUI/SMESH_msg_fr.ts +++ b/src/SMESHGUI/SMESH_msg_fr.ts @@ -884,6 +884,14 @@ MEN_GMF Fichier GMF + + MEN_IMPORT_MESHIO + autres formats... (meshio) + + + MEN_EXPORT_MESHIO + autres formats... (meshio) + MEN_MERGE Fusionner les nœuds @@ -1966,6 +1974,10 @@ ce qui peut faire planter l'application. Voulez-vous continuer la visualisation Impossible d'exporter le maillage. Vérifiez l'espace disponible sur le disque. + + SMESH_EXPORT_FAILED_SHORT + Impossible d'exporter le maillage. + SMESH_EXPORT_MED_DUPLICATED_GRP Il y a des noms de groupes dupliqués dans le maillage "%1". @@ -1997,6 +2009,22 @@ Ecraser le fichier ? des maillages avec les noms suivants: %1 Le fichier obtenu pourrait être incorrect. Ecraser le fichier ? + + + SMESH_EXPORT_MESHIO_ONLY_MESH + La mise en œuvre actuelle utilise l'exportation via un fichier MED intermédiaire. +Cependant, meshio ne prend pas en charge la lecture des fichiers MED comportant plusieurs maillages. +Les maillages sélectionnés seront enregistrés dans des fichiers séparés. + +Voulez-vous continuer? + + + SMESH_MESHIO_NOT_INSTALLED + Meshio n'est pas installé! +L'opération sera annulée. + +Essayez d'installer meshio avec une commande: +pip install meshio[all] EXPORT_NOT_SUPPORTED diff --git a/src/SMESHGUI/SMESH_msg_ja.ts b/src/SMESHGUI/SMESH_msg_ja.ts index a2704dba5..37cc0a015 100644 --- a/src/SMESHGUI/SMESH_msg_ja.ts +++ b/src/SMESHGUI/SMESH_msg_ja.ts @@ -723,6 +723,14 @@ MEN_GMF GMFファイル + + MEN_IMPORT_MESHIO + 他の形式... (meshio) + + + MEN_EXPORT_MESHIO + 他の形式... (meshio) + MEN_MERGE 節点の結合 @@ -1743,6 +1751,10 @@ SMESH_EXPORT_FAILED メッシュをエクスポートすることができません。ディスクの空き領域を確認してください。 + + SMESH_EXPORT_FAILED_SHORT + メッシュのエクスポートに失敗しました。 + SMESH_EXPORT_MED_DUPLICATED_GRP 「%1」メッシュ内で重複するグループの名前です。エクスポートをキャンセルすることができ、名前の変更、結果の MED ファイル名に非グループの場合は研究の名前を一致しません。続行しますか。 @@ -1763,6 +1775,22 @@ SMESH_EXPORT_MED_MESH_NAMES_COLLISION 選択したファイルには既に次の名を持つメッシュが含まれています: %1 結果ファイルが正しくない可能性があります。ファイルを上書きしますか。 + + SMESH_EXPORT_MESHIO_ONLY_MESH + 現在の実装では、中間 MED ファイルを介したエクスポートが使用されます。 +ただし、mesio は複数のメッシュを含む MED ファイルの読み取りをサポートしていません。 +選択したメッシュは別のファイルに保存されます。 + +続けたいですか？ + + + SMESH_MESHIO_NOT_INSTALLED + メシオはインストールされていません！ +操作はキャンセルされます。 + +次のコマンドで mesio をインストールしてみます。 +pip install meshio[all] + EXPORT_NOT_SUPPORTED 名前 '%1' を %2 %3 とメッシュのエクスポートは無視されます。続行しますか。 diff --git a/src/SMESH_I/CMakeLists.txt b/src/SMESH_I/CMakeLists.txt index e90b62654..27189b4fd 100644 --- a/src/SMESH_I/CMakeLists.txt +++ b/src/SMESH_I/CMakeLists.txt @@ -117,6 +117,7 @@ SET(SMESHEngine_HEADERS SMESH_Homard_i.hxx SMESH_SequentialMesh_i.hxx SMESH_ParallelMesh_i.hxx + SMESH_Meshio.h ) # --- sources --- @@ -147,6 +148,7 @@ SET(SMESHEngine_SOURCES MG_ADAPT_i.cxx SMESH_Homard_i.cxx SMESH_ParallelMesh_i.cxx + SMESH_Meshio.cxx ) # --- rules --- diff --git a/src/SMESH_I/SMESH_Gen_i.cxx b/src/SMESH_I/SMESH_Gen_i.cxx index 265be5074..1c78a2526 100644 --- a/src/SMESH_I/SMESH_Gen_i.cxx +++ b/src/SMESH_I/SMESH_Gen_i.cxx @@ -112,6 +112,7 @@ #include #include #include +#include "SMESH_Meshio.h" // to pass CORBA exception through SMESH_TRY #define SMY_OWN_CATCH catch( SALOME::SALOME_Exception& se ) { throw se; } @@ -1350,6 +1351,39 @@ namespace SALOME::BAD_PARAM ); } } + + //================================================================================ + /*! + * \brief Makes a python dump for a function by iterating the given SObjects + */ + //================================================================================ + + void functionToPythonDump( + SMESH_Gen_i* smesh, const std::string& functionName, std::vector& sobjects) + { + TPythonDump aPythonDump(smesh); + aPythonDump << "(["; + + int i = 0; + for (const SALOMEDS::SObject_wrap& so : sobjects) + { + if (i > 0) + { + aPythonDump << ", "; + } + + if (!so->_is_nil()) + { + aPythonDump << so; + } + else + { + aPythonDump << "mesh_" << i; + } + } + + aPythonDump << "], status) = " << smesh << functionName; + } } //============================================================================= @@ -1649,6 +1683,91 @@ SMESH_Gen_i::CreateMeshesFromGMF( const char* theFileName, return aMesh._retn(); } +//================================================================================ +/*! + * \brief Create a mesh and import data from any file supported by meshio library + */ +//================================================================================ + +SMESH::mesh_array* SMESH_Gen_i::CreateMeshesFromMESHIO(const char* theFileName, + SMESH::DriverMED_ReadStatus& theStatus) +{ + Unexpect aCatch(SALOME_SalomeException); + checkFileReadable(theFileName); + + MESSAGE("Import part with meshio through an intermediate MED file"); + + // Create an object that holds a temp file name and + // removes the file when goes out of scope. + SMESH_Meshio meshio; + const QString tempFileName = meshio.CreateTempFileName(theFileName); + + // Convert temp file into a target one with meshio command + meshio.Convert(theFileName, tempFileName); + + // We don't need a python dump from SMESH_Gen_i::CreateMeshesFromMED(), so + // we can't use this method as is here. The followed code is an edited part of + // copy pasted CreateMeshesFromMED(). + + // Retrieve mesh names from the file + DriverMED_R_SMESHDS_Mesh myReader; + myReader.SetFile(tempFileName.toStdString()); + myReader.SetMeshId(-1); + Driver_Mesh::Status aStatus; + list aNames = myReader.GetMeshNames(aStatus); + SMESH::mesh_array_var aResult = new SMESH::mesh_array(); + theStatus = (SMESH::DriverMED_ReadStatus)aStatus; + + if (theStatus == SMESH::DRS_OK) + { + SALOMEDS::StudyBuilder_var aStudyBuilder; + aStudyBuilder = getStudyServant()->NewBuilder(); + aStudyBuilder->NewCommand(); // There is a transaction + + aResult->length(aNames.size()); + std::vector sobjects; + int i = 0; + + // Iterate through all meshes and create mesh objects + for (const std::string& meshName : aNames) + { + // create mesh + SMESH::SMESH_Mesh_var mesh = createMesh(); + + // publish mesh in the study + SALOMEDS::SObject_wrap aSO; + if (CanPublishInStudy(mesh)) + aSO = PublishMesh(mesh.in(), meshName.c_str()); + + // Save SO to use in a python dump + sobjects.emplace_back(aSO); + + // Read mesh data (groups are published automatically by ImportMEDFile()) + SMESH_Mesh_i* meshServant = dynamic_cast(GetServant(mesh).in()); + ASSERT(meshServant); + SMESH::DriverMED_ReadStatus status1 = + meshServant->ImportMEDFile(tempFileName.toUtf8().data(), meshName.c_str()); + if (status1 > theStatus) + theStatus = status1; + + aResult[i++] = SMESH::SMESH_Mesh::_duplicate(mesh); + meshServant->GetImpl().GetMeshDS()->Modified(); + } + + if (!aStudyBuilder->_is_nil()) + aStudyBuilder->CommitCommand(); + + // Python dump + const std::string functionName = std::string(".CreateMeshesFromMESHIO(r'") + theFileName + "')"; + functionToPythonDump(this, functionName, sobjects); + } + + // Dump creation of groups + for (CORBA::ULong i = 0; i < aResult->length(); ++i) + SMESH::ListOfGroups_var groups = aResult[i]->GetGroups(); + + return aResult._retn(); +} //============================================================================= /*! diff --git a/src/SMESH_I/SMESH_Gen_i.hxx b/src/SMESH_I/SMESH_Gen_i.hxx index ce5e28973..1b3af8ad5 100644 --- a/src/SMESH_I/SMESH_Gen_i.hxx +++ b/src/SMESH_I/SMESH_Gen_i.hxx @@ -256,6 +256,10 @@ public: CORBA::Boolean theMakeRequiredGroups, SMESH::ComputeError_out theError); + // Create a mesh and import data from any file supported by meshio library + SMESH::mesh_array* CreateMeshesFromMESHIO(const char* theFileName, + SMESH::DriverMED_ReadStatus& theStatus); + // Create dual mesh of a tetrahedron mesh SMESH::SMESH_Mesh_ptr CreateDualMesh(SMESH::SMESH_IDSource_ptr meshPart, const char* meshName, diff --git a/src/SMESH_I/SMESH_Mesh_i.cxx b/src/SMESH_I/SMESH_Mesh_i.cxx index 13c602d92..e1c8ca916 100644 --- a/src/SMESH_I/SMESH_Mesh_i.cxx +++ b/src/SMESH_I/SMESH_Mesh_i.cxx @@ -57,6 +57,7 @@ #include "SMESH_PreMeshInfo.hxx" #include "SMESH_PythonDump.hxx" #include "SMESH_subMesh_i.hxx" +#include "SMESH_Meshio.h" #include #include @@ -4052,6 +4053,55 @@ void SMESH_Mesh_i::ExportPartToMED(SMESH::SMESH_IDSource_ptr meshPart, SMESH_CATCH( SMESH::throwCorbaException ); } +//================================================================================ +/*! + * \brief Export a part of mesh to a file with meshio library + */ +//================================================================================ + +void SMESH_Mesh_i::ExportPartToMESHIO(SMESH::SMESH_IDSource_ptr meshPart, + const char* file, + const char* selectedFilter) +{ + // Get default MED version + SMESH::long_array_var medVersions = GetMEDVersionsCompatibleForAppend(); + const CORBA::Long version = medVersions[0]; + MESSAGE("Export part with meshio through MED version: " << version); + + // Default values are the same as for MED export + const bool auto_groups = false; + const bool overwrite = true; + const bool autoDimension = true; + const GEOM::ListOfFields fields; + const char* geomAssocFields = ""; + const double ZTolerance = -1.0; + const bool saveNumbers = true; + + // Create an object that holds a temp file name and + // removes the file when goes out of scope. + SMESH_Meshio meshio(selectedFilter); + const QString tempFileName = meshio.CreateTempFileName(file); + + // Export a given mesh into the temp file + MEDFileSpeCls spe(tempFileName.toUtf8().data(), overwrite, version); + this->ExportPartToMEDCommon(spe, meshPart, auto_groups, autoDimension, fields, + geomAssocFields, ZTolerance, saveNumbers); + + // Convert temp file into a target one with meshio command + meshio.Convert(tempFileName, file); + + // Prepare python dump + SMESH_TRY; + + TPythonDump() << _this() << ".ExportPartToMESHIO(" + << meshPart << ", r'" + << file << "', '" + << selectedFilter << "'" + << ")"; + + SMESH_CATCH(SMESH::throwCorbaException); +} + //================================================================================ class MEDFileMemSpeCls diff --git a/src/SMESH_I/SMESH_Mesh_i.hxx b/src/SMESH_I/SMESH_Mesh_i.hxx index d56f4e28a..131993a40 100644 --- a/src/SMESH_I/SMESH_Mesh_i.hxx +++ b/src/SMESH_I/SMESH_Mesh_i.hxx @@ -248,6 +248,10 @@ public: CORBA::Double ZTolerance, CORBA::Boolean saveNumbers ); + void ExportPartToMESHIO(SMESH::SMESH_IDSource_ptr meshPart, + const char* file, + const char* selectedFilter); + CORBA::LongLong ExportPartToMEDCoupling(SMESH::SMESH_IDSource_ptr meshPart, CORBA::Boolean auto_groups, CORBA::Boolean autoDim, diff --git a/src/SMESH_I/SMESH_Meshio.cxx b/src/SMESH_I/SMESH_Meshio.cxx new file mode 100644 index 000000000..d23d52c6c --- /dev/null +++ b/src/SMESH_I/SMESH_Meshio.cxx @@ -0,0 +1,245 @@ +// Copyright (C) 2007-2024 CEA, EDF, OPEN CASCADE +// +// Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN, +// CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS +// +// This library is free software; you can redistribute it and/or +// modify it under the terms of the GNU Lesser General Public +// License as published by the Free Software Foundation; either +// version 2.1 of the License, or (at your option) any later version. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// Lesser General Public License for more details. +// +// You should have received a copy of the GNU Lesser General Public +// License along with this library; if not, write to the Free Software +// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +// +// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com +// + +// SMESH SMESH_I : support of import / export with meshio library +// File : SMESH_Meshio.h +// Author : Konstantin Leontev, Open CASCADE S.A.S. +// + +#include "SMESH_Meshio.h" + +// SALOME KERNEL includes +#include +#include +#include +#include + +// Qt +#include + +#include + + +/*! + Constructor +*/ +SMESH_Meshio::SMESH_Meshio() +{ + CreateErrorFileName(); +} + +/*! + Constructor +*/ +SMESH_Meshio::SMESH_Meshio(const QString& selectedFilter) +: SMESH_Meshio() +{ + mySelectedFilter = selectedFilter; +} + +/*! + Destructor +*/ +SMESH_Meshio::~SMESH_Meshio() +{ + RemoveTempFile(); + RemoveErrorFile(); +} + +/*! + Convert file with meshio convert command +*/ +void SMESH_Meshio::Convert(const QString& sourceFileName, const QString& targetFileName) const +{ + // Execute meshio convert command + const QString convert = IsModernPythonVersion() ? "meshio convert " : "meshio-convert "; + const QString optArgs = GetConvertOptArgs(); + + const std::string cmd = + (convert + optArgs + " " + sourceFileName + " " + targetFileName + " 2> " + myErrorFileName).toStdString(); + MESSAGE("Call system(\"" << cmd << "\") ..."); + + const int status = system(cmd.c_str()); + MESSAGE("status: " << status); + + // Check results + if (status != 0 || !Kernel_Utils::IsExists(targetFileName.toStdString())) + { + // Get all the output from an error file + const std::string meshioErrors = ReadErrorsFromFile(); + MESSAGE("meshioErrors: \n" << meshioErrors); + + SALOME::ExceptionStruct es; + es.type = SALOME::ExceptionType::BAD_PARAM; + es.lineNumber = -1; + es.text = CORBA::string_dup( + ("MESHIO\nFailed system(\"" + cmd + "\").\n\n" + meshioErrors + "\nOperation canceled.").c_str()); + + throw SALOME::SALOME_Exception(es); + } +} + +/*! + Returns a name for a file in default temp directory + based on a target basename. +*/ +QString SMESH_Meshio::CreateTempFileName(const QString& targetFileName) +{ + // Make a name for a temp file + const QFileInfo fileInfo(targetFileName); + const QString targetBaseName = fileInfo.baseName(); + const QString dirName(SALOMEDS_Tool::GetTmpDir().c_str()); + myTempFileName = dirName + targetBaseName + ".med"; + + MESSAGE("targetFileName: " << targetFileName.toStdString()); + MESSAGE("myTempFileName: " << myTempFileName.toStdString()); + + return myTempFileName; +} + +/*! + Removes the temporary file if we have any +*/ +void SMESH_Meshio::RemoveTempFile() +{ + if (!myTempFileName.isEmpty()) + { + std::remove(myTempFileName.toStdString().c_str()); + MESSAGE("Temp file " << myTempFileName.toStdString() << " was removed"); + } +} + +/*! + Returns true if current Python equal or newer than required version for + meshio release from 5.0 and greater. +*/ +bool SMESH_Meshio::IsModernPythonVersion() +{ + // It's a version when meshio commands were changed from using + // many executables for each operation to one for everything (meshio 5.0). + // For example, from + // meshio-convert input.msh output.vtk + // to + // meshio convert input.msh output.vtk + + const std::vector minReqVersionNums = { 3, 7 }; + + auto GetCurrentVersion = []() -> QString + { + const char *envVar = std::getenv("PYTHON_VERSION"); + if (envVar && (envVar[0] != '\0')) + { + return envVar; + } + + return {}; + }; + + auto IsModernVersion = [&]() -> bool + { + const QString curVersion = GetCurrentVersion(); + MESSAGE("Current Python version: " << curVersion.toStdString()) + if (curVersion.length() < 3) + return false; + + int index = 0; + const QStringList curVersionNums = curVersion.split('.'); + for (const int minVersion : minReqVersionNums) + { + if (minVersion > curVersionNums[index].toInt()) + { + return false; + } + + ++index; + } + + return true; + }; + + static const bool isModern = IsModernVersion(); + return isModern; +} + +/*! + Creates a temp file for error output from meshio command. +*/ +void SMESH_Meshio::CreateErrorFileName() +{ + // Make a name for a temp file + const QString fileName = "meshio_errors.txt"; + const QString dirName(SALOMEDS_Tool::GetTmpDir().c_str()); + myErrorFileName = dirName + fileName; + + MESSAGE("myErrorFileName: " << myErrorFileName.toStdString()); +} + +/*! + Removes the temporary error output file if we have any +*/ +void SMESH_Meshio::RemoveErrorFile() +{ + if (!myErrorFileName.isEmpty()) + { + std::remove(myErrorFileName.toStdString().c_str()); + MESSAGE("Temp file " << myErrorFileName.toStdString() << " was removed"); + } +} + +/*! + Read all errors output from a temp file +*/ +std::string SMESH_Meshio::ReadErrorsFromFile() const +{ + if (myErrorFileName.isEmpty()) + return {}; + + std::ifstream fileStream(myErrorFileName.toStdString()); + if(fileStream) + { + std::ostringstream ss; + ss << fileStream.rdbuf(); + + return ss.str(); + } + + return {}; +} + +/*! + Get optional arguments for meshio convert command +*/ +QString SMESH_Meshio::GetConvertOptArgs() const +{ + if (mySelectedFilter.isEmpty()) + return mySelectedFilter; + + // Check what kind of option we must provide + if (mySelectedFilter.startsWith("ANSYS")) + return "-o ansys"; + else if (mySelectedFilter.startsWith("Gmsh 2")) + return "-o gmsh22"; + else if (mySelectedFilter.startsWith("Gmsh 4")) + return "-o gmsh"; + + return {}; +} diff --git a/src/SMESH_I/SMESH_Meshio.h b/src/SMESH_I/SMESH_Meshio.h new file mode 100644 index 000000000..efb41b0bf --- /dev/null +++ b/src/SMESH_I/SMESH_Meshio.h @@ -0,0 +1,61 @@ +// Copyright (C) 2007-2024 CEA, EDF, OPEN CASCADE +// +// Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN, +// CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS +// +// This library is free software; you can redistribute it and/or +// modify it under the terms of the GNU Lesser General Public +// License as published by the Free Software Foundation; either +// version 2.1 of the License, or (at your option) any later version. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// Lesser General Public License for more details. +// +// You should have received a copy of the GNU Lesser General Public +// License along with this library; if not, write to the Free Software +// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +// +// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com +// + +// SMESH SMESH_I : support of import / export with meshio library +// File : SMESH_Meshio.h +// Author : Konstantin Leontev, Open CASCADE S.A.S. +// +#ifndef SMESH_MESHIO_H +#define SMESH_MESHIO_H + +#include "SMESH.hxx" + +#include + + +class SMESH_I_EXPORT SMESH_Meshio +{ +public: + SMESH_Meshio(); + SMESH_Meshio(const QString& selectedFilter); + virtual ~SMESH_Meshio(); + + QString CreateTempFileName(const QString& targetFileName); + void Convert(const QString& sourceFileName, const QString& targetFileName) const; + + static bool IsModernPythonVersion(); + +private: + void RemoveTempFile(); + void CreateErrorFileName(); + void RemoveErrorFile(); + std::string ReadErrorsFromFile() const; + + QString GetConvertOptArgs() const; + +private: + QString myTempFileName; + QString myErrorFileName; + QString mySelectedFilter; +}; + +#endif // SMESH_MESHIO_H diff --git a/src/SMESH_SWIG/smeshBuilder.py b/src/SMESH_SWIG/smeshBuilder.py index 2401ed74c..ce1bfdc13 100644 --- a/src/SMESH_SWIG/smeshBuilder.py +++ b/src/SMESH_SWIG/smeshBuilder.py @@ -741,6 +741,19 @@ class smeshBuilder( SMESH._objref_SMESH_Gen, object ): if error.comment: print("*** CreateMeshesFromGMF() errors:\n", error.comment) return Mesh(self, self.geompyD, aSmeshMesh), error + def CreateMeshesFromMESHIO(self, theFileName): + """ + Create a Mesh object(s) importing data from from any file supported by meshio library. + + Returns: + a tuple ( list of class :class:`Mesh` instances, + :class:`SMESH.DriverMED_ReadStatus` ) + """ + + aSmeshMeshes, aStatus = SMESH._objref_SMESH_Gen.CreateMeshesFromMESHIO(self, theFileName) + aMeshes = [ Mesh(self, self.geompyD, m) for m in aSmeshMeshes ] + return aMeshes, aStatus + def Concatenate( self, meshes, uniteIdenticalGroups, mergeNodesAndElements = False, mergeTolerance = 1e-5, allGroups = False, name = "", meshToAppendTo = None): @@ -2596,6 +2609,47 @@ class Mesh(metaclass = MeshMeta): meshPart = self.mesh self.mesh.ExportGMF(meshPart, f, True) + def ExportMESHIO( + self, + fileName, + selectedFilter, + meshPart + ): + """ + Exports a part of mesh to a file with meshio library + through an intermediate MED file. + + Parametrs described below are the same as for ExportMED() method. + However, we know that _pyMesh::Process(const Handle(_pyCommand)& theCommand) method + change a position of meshPart argument when dump to a Python script for whatever reason + this way: + - to 5th place for ExportMED command + - to last place for the rest commands + + So, for this method meshPart moved to the end of the args. + Look at src/SMESH_I/SMESH_2smeshpy.cxx for related source code. + + The same note is for the name of the method that was dumped as ExportPartToMESHIO(), + but then processing just removes PartTo from the middle of the name as it was done + for all export methods. + + Parameters: + fileName: is the file name + selectedFilter: filter string selected by user in a file dialog + meshPart: a part of mesh (:class:`sub-mesh, group or filter `) + to export instead of the mesh + """ + + if isinstance(meshPart, Mesh): + meshPart = meshPart.GetMesh() + + self.mesh.ExportPartToMESHIO( + meshPart, + fileName, + selectedFilter + ) + + def ExportToMED(self, *args, **kwargs): """ Deprecated, used only for compatibility! Please, use :meth:`ExportMED` method instead. diff --git a/test/SMESH_MeshioFiles.py b/test/SMESH_MeshioFiles.py new file mode 100644 index 000000000..6bd3cc876 --- /dev/null +++ b/test/SMESH_MeshioFiles.py @@ -0,0 +1,181 @@ +# -*- coding: iso-8859-1 -*- +# Copyright (C) 2007-2024 CEA, EDF, OPEN CASCADE +# +# This library is free software; you can redistribute it and/or +# modify it under the terms of the GNU Lesser General Public +# License as published by the Free Software Foundation; either +# version 2.1 of the License, or (at your option) any later version. +# +# This library is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this library; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +# +# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com +# + +# ======================================= +# Testing export/import of sample meshes from meshio repository +# File : SMESH_MeshioFiles.py +# Module : SMESH + +import tempfile +import subprocess +import os +from pathlib import Path + +from SMESH_MeshioShapes import export_mesh, import_file + + +def supported_extensions(): + """ + Returns a list of format extensions that salome already supports + for import/export operations. + """ + + return [ + '.med', + '.unv', + '.stl', + '.cgns', + '.mesh', + '.meshb' + ] + + +def convert(source_file, target_file, errors): + """ + Converts files with meshio shell command. + """ + try: + cmd = 'meshio convert {} {}'.format(source_file, target_file) + print('{} start...'.format(cmd)) + + subprocess.run(['meshio', 'convert', source_file, target_file], check=True) + + return True + + except Exception: + source_ext = Path(source_file).suffix.upper() + target_ext = Path(target_file).suffix.upper() + + errors.append('[{} -> {}]: {} failed!'.format(source_ext, target_ext, cmd)) + + return False + + +def print_errors(errors): + """ + Checks if we have got any saved error messages and print them. + """ + + if not len(errors): + return + + print('\nErrors:') + for idx, err in enumerate(errors): + print('{:02}: {}'.format(idx, err)) + + print('\n===============================================') + + +def perform_ext(directory, ext, errors): + """ + Exports a given mesh and imports it back for each mesh file + through a file with a given extension. + It uses shell meshio convert command for conversion. + """ + + for subdir, _, files in os.walk(directory): + for file in files: + + # Skip helper files + if file.endswith('.md') or file.endswith('Makefile'): + continue + + filepath = os.path.join(subdir, file) + + with tempfile.NamedTemporaryFile(suffix=ext) as temp_file: + temp_file.close() # prevents PermissionError on Windows + if not convert(filepath, temp_file.name, errors): + continue + + file_extension = Path(file).suffix + with tempfile.NamedTemporaryFile(suffix=file_extension) as temp_file_back: + temp_file.close() # prevents PermissionError on Windows + temp_file_back.close() # prevents PermissionError on Windows + convert(temp_file.name, temp_file_back.name, errors) + + +def test_shell(directory, errors): + """ + Iterates salome extensions and convert meshes through + a corresponding format. + . + """ + + for ext in supported_extensions(): + perform_ext(directory, ext, errors) + + +def test_salome(directory, errors): + """ + Iterates over mesh files in a given directory and tries to import + them into salome and export back to a temp file with the same format. + """ + + for subdir, _, files in os.walk(directory): + for file in files: + + # Skip helper files + if file.endswith('.md') or file.endswith('Makefile'): + continue + + # Skip files those have issues with current meshio version + if (file.endswith('.f3grid') or + file.endswith('.ugrid') or + file.endswith('.su2') or + file.endswith('element_elset.inp') or + file.endswith('insulated-4.1.msh') or + file.endswith('insulated-2.2.msh') or + file.endswith('simple1')): + continue + + filepath = os.path.join(subdir, file) + + # Import a file + mesh = import_file(filepath, errors) + if not mesh: + continue + + file_extension = Path(file).suffix + with tempfile.NamedTemporaryFile(suffix=file_extension) as temp_file: + temp_file.close() # prevents PermissionError on Windows + export_mesh(mesh, temp_file.name, errors) + + +def test(): + """ + Tests import/export of meshes from a given directory + and prints errors if we have any. + """ + + errors = [] + directory = 'data/meshio_meshes' + + # Only for debug purpose. + # Uncomment if you need to test meshio library shell command itself. + # test_shell(directory, errors) + + test_salome(directory, errors) + + print_errors(errors) + assert not len(errors) + + +if __name__ == "__main__": + test() diff --git a/test/SMESH_MeshioShapes.py b/test/SMESH_MeshioShapes.py new file mode 100644 index 000000000..f77d7a999 --- /dev/null +++ b/test/SMESH_MeshioShapes.py @@ -0,0 +1,260 @@ +# -*- coding: iso-8859-1 -*- +# Copyright (C) 2007-2024 CEA, EDF, OPEN CASCADE +# +# This library is free software; you can redistribute it and/or +# modify it under the terms of the GNU Lesser General Public +# License as published by the Free Software Foundation; either +# version 2.1 of the License, or (at your option) any later version. +# +# This library is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this library; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +# +# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com +# + +# ======================================= +# Testing export/import of some simple shapes in different formats with meshio library +# File : SMESH_MeshioShapes.py +# Module : SMESH + +import tempfile +from pathlib import Path + +import salome +salome.salome_init() + +import GEOM +from salome.geom import geomBuilder + +import SMESH +from salome.smesh import smeshBuilder + +import SALOME + +# Constants +EXPORT_TITLE = 'Export' +IMPORT_TITLE = 'Import' +UNKNOWN_EXCEPTION = 'Unknown exception' +OUTPUT_DIVIDER = '\n===============================================' + + +geompy = geomBuilder.New() +smesh = smeshBuilder.New() + + +def make_plane(): + """ + Makes default plane for testing. + """ + + plane = geompy.MakeFaceHW(100, 100, 1) + geompy.addToStudy( plane, 'plane' ) + + return plane + + +def make_box(): + """ + Makes default box for testing. + """ + + box = geompy.MakeBoxDXDYDZ(200, 200, 200) + geompy.addToStudy(box, 'box') + + return box + + +def make_mesh(shape, name): + """ + Makes a mesh from a given shape. + """ + res_mesh = smesh.Mesh(shape,name) + NETGEN_1D_2D = res_mesh.Triangle(algo=smeshBuilder.NETGEN_1D2D) + isDone = res_mesh.Compute() + assert isDone + + smesh.SetName(res_mesh, name) + smesh.SetName(NETGEN_1D_2D.GetAlgorithm(), 'NETGEN 1D-2D') + smesh.SetName(res_mesh.GetMesh(), name) + + return res_mesh + + +def file_extensions(): + """ + Returns all files extensions supported by meshio. + Commented formats should be checked on next meshio release to see if the problem was fixed. + """ + + return [ + '.avs', + '.bdf', + # '.cgns', # meshio IndexError: index 2 is out of bounds for axis 1 with size 2 + # '.dat', # meshio ValueError: need at least one array to concatenate + '.dato', + '.dato.gz', + '.e', + # '.ele', # never returns from meshio convert command + '.exo', + # '.f3grid', # meshio IndexError: Replacement index 3 out of range for positional args tuple + '.fem', + # '.h5m', # meshio AttributeError: 'list' object has no attribute 'items' + '.inp', + '.mdpa', + '.med', + '.mesh', + '.meshb', + # '.msh', # meshio KeyError: "Illegal ANSYS cell type 'line' + '.nas', + # '.node', # never returns from meshio convert command + # '.obj', # meshio._exceptions.WriteError: Wavefront .obj files can only contain triangle or quad cells + # '.off', # failed on Windows only + # '.ply', # Export Warning: PLY doesn't support 64-bit integers. Casting down to 32-bit. Then import failed + '.post', + '.post.gz', + '.stl', + # '.su2', # meshio TypeError: cannot unpack non-iterable CellBlock object + # '.svg', # meshio._exceptions.WriteError: SVG can only handle flat 2D meshes + # '.ugrid', # meshio AttributeError: 'list' object has no attribute 'reshape' + '.vol', + '.vol.gz', + '.vtk', + '.vtu', + # '.wkt', # Export Warning: WTK only supports triangle cells. Skipping {", ".join(skip)} then import failed + '.xdmf', + '.xmf', + '.xml' + ] + + +def exception_handle(file_name, errors, operation_type, ex_text): + """ + Pepares and saves an exception message. + """ + + ext = Path(file_name).suffix.upper() + msg = '{} {} failed! File name: {}'.format(operation_type, ext, file_name) + if ex_text: + msg += ' Exception: ' + ex_text + OUTPUT_DIVIDER + '\n' + + errors.append(msg) + + +def export_mesh(mesh, file_name, errors): + """ + Performs an export operatin. + """ + + try: + print('Export to file: ', file_name) + + # Here we use an empty selected filter to make things simpler + mesh.ExportMESHIO(file_name, '', mesh) + return True + + except SALOME.SALOME_Exception as ex: + exception_handle(file_name, errors, EXPORT_TITLE, ex.details.text) + + except: + exception_handle(file_name, errors, EXPORT_TITLE, UNKNOWN_EXCEPTION) + + return False + + +def import_file(file_name, errors): + """ + Performs an import operatin. + """ + + try: + print('Import from file: ', file_name) + + ([mesh], status) = smesh.CreateMeshesFromMESHIO(file_name) + return mesh + + except SALOME.SALOME_Exception as ex: + exception_handle(file_name, errors, IMPORT_TITLE, ex.details.text) + + except: + exception_handle(file_name, errors, IMPORT_TITLE, UNKNOWN_EXCEPTION) + + return None + + +def print_errors(errors): + """ + Checks if we have got any saved error messages and print them. + The test failed in this case. + """ + + if not len(errors): + return + + print('\nErrors:\n') + for idx, err in enumerate(errors): + print('{:02}: {}'.format(idx, err)) + + print(OUTPUT_DIVIDER) + + +def perform(mesh, name, errors): + """ + Exports a given mesh and imports it back for each file format. + """ + + for ext in file_extensions(): + with tempfile.NamedTemporaryFile(suffix=ext, prefix=name) as file: + file.close() # prevents PermissionError on Windows + if (export_mesh(mesh, file.name, errors)): + file.close() # prevents PermissionError on Windows + import_file(file.name, errors) + + +def test_box(errors): + """ + Tests export / import of a mesh for a default box geometry. + """ + + box = make_box() + + mesh_name = 'Test_box_' + mesh = make_mesh(box, mesh_name) + perform(mesh, mesh_name, errors) + + +def test_plane(errors): + """ + Tests export / import of a mesh for a default plane geometry. + """ + + plane = make_plane() + + mesh_name = 'Test_plane_' + mesh = make_mesh(plane, mesh_name) + perform(mesh, mesh_name, errors) + + +def test(): + """ + Creates meshes from plane and box and tries to export them to a temp files + and import them back with different formats supported by meshio library. + Prints errors if we have any. + """ + + errors = [] + + test_plane(errors) + test_box(errors) + + print_errors(errors) + assert not len(errors) + + +if __name__ == "__main__": + test() diff --git a/test/data/meshio_meshes/abaqus/README.md b/test/data/meshio_meshes/abaqus/README.md new file mode 100644 index 000000000..5c77692cf --- /dev/null +++ b/test/data/meshio_meshes/abaqus/README.md @@ -0,0 +1,2 @@ +* `UUea.inp`: From http://www-h.eng.cam.ac.uk/help/programs/fe/abaqus/faq68/txt/UUea.inp.txt +* `nle1xf3c.inp`: From https://abaqus-docs.mit.edu/2017/English/SIMAINPRefResources/nle1xf3c.inp diff --git a/test/data/meshio_meshes/abaqus/UUea.inp b/test/data/meshio_meshes/abaqus/UUea.inp new file mode 100644 index 000000000..b421ea6b3 --- /dev/null +++ b/test/data/meshio_meshes/abaqus/UUea.inp @@ -0,0 +1,285 @@ +*Heading +** Job name: UUa Model name: Model-2 +** Generated by: Abaqus/CAE 6.11-1 +*Preprint, echo=NO, model=NO, history=NO, contact=NO +** +** PARTS +** +*Part, name=Part-1 +*End Part +** +** +** ASSEMBLY +** +*Assembly, name=Assembly +** +*Instance, name=Part-1-1, part=Part-1 +*Node + 1, 0., 0. + 2, 10., 0. + 3, 20., 0. + 4, 30., 0. + 5, 40., 0. + 6, 50., 0. + 7, 0., 10. + 8, 10., 10. + 9, 20., 10. + 10, 30., 10. + 11, 40., 10. + 12, 50., 10. + 13, 0., 20. + 14, 10., 20. + 15, 20., 20. + 16, 30., 20. + 17, 40., 20. + 18, 50., 20. + 19, 0., 30. + 20, 10., 30. + 21, 20., 30. + 22, 30., 30. + 23, 40., 30. + 24, 50., 30. + 25, 0., 40. + 26, 10., 40. + 27, 20., 40. + 28, 30., 40. + 29, 40., 40. + 30, 50., 40. + 31, 0., 50. + 32, 10., 50. + 33, 20., 50. + 34, 30., 50. + 35, 40., 50. + 36, 50., 50. + 37, 0., 60. + 38, 10., 60. + 39, 20., 60. + 40, 30., 60. + 41, 40., 60. + 42, 50., 60. + 43, 0., 70. + 44, 10., 70. + 45, 20., 70. + 46, 30., 70. + 47, 40., 70. + 48, 50., 70. + 49, 0., 80. + 50, 10., 80. + 51, 20., 80. + 52, 30., 80. + 53, 40., 80. + 54, 50., 80. + 55, 0., 90. + 56, 10., 90. + 57, 20., 90. + 58, 30., 90. + 59, 40., 90. + 60, 50., 90. + 61, 0., 100. + 62, 10., 100. + 63, 20., 100. + 64, 30., 100. + 65, 40., 100. + 66, 50., 100. +*Element, type=CAX4P + 1, 1, 2, 8, 7 + 2, 2, 3, 9, 8 + 3, 3, 4, 10, 9 + 4, 4, 5, 11, 10 + 5, 5, 6, 12, 11 + 6, 7, 8, 14, 13 + 7, 8, 9, 15, 14 + 8, 9, 10, 16, 15 + 9, 10, 11, 17, 16 +10, 11, 12, 18, +17 +11, 13, 14, 20, 19 +12, 14, 15, 21, 20 +13, 15, 16, 22, 21 +14, 16, 17, 23, 22 +15, 17, 18, 24, 23 +16, 19, 20, 26, 25 +17, 20, +21, 27, 26 +18, 21, 22, 28, 27 +19, 22, 23, 29, 28 +20, 23, 24, 30, 29 +21, 25, 26, 32, 31 +22, 26, 27, 33, 32 +23, 27, 28, 34, 33 +24, 28, 29, 35, 34 +25, 29, 30, 36, 35 +26, 31, 32, 38, 37 +27, 32, 33, 39, 38 +28, 33, 34, 40, 39 +29, 34, 35, 41, 40 +30, 35, 36, 42, 41 +31, 37, 38, 44, 43 +32, 38, 39, 45, 44 +33, 39, 40, 46, 45 +34, 40, 41, 47, 46 +35, 41, 42, 48, 47 +36, 43, 44, 50, 49 +37, 44, 45, 51, 50 +38, 45, 46, 52, 51 +39, 46, 47, 53, 52 +40, 47, 48, 54, 53 +41, 49, +50, 56, 55 +42, 50, 51, 57, 56 +43, 51, 52, 58, 57 +44, 52, 53, 59, 58 +45, 53, 54, 60, 59 +46, 55, 56, 62, 61 +47, 56, +57, 63, 62 +48, 57, 58, 64, 63 +49, 58, 59, +65, 64 +50, 59, 60, 66, 65 +*Nset, nset=_PickedSet2, internal, generate + 1, 66, 1 +*Elset, elset=_PickedSet2, internal, generate + 1, 50, 1 +** Section: Section-1 +*Solid Section, elset=_PickedSet2, material=Material-1 +, +*End Instance +** +*Nset, nset=_PickedSet7, internal, instance=Part-1-1, generate + 1, 61, 6 +*Elset, elset=_PickedSet7, internal, instance=Part-1-1, generate + 1, 46, 5 +*Nset, nset=_PickedSet8, internal, instance=Part-1-1, generate + 1, 6, 1 +*Elset, elset=_PickedSet8, internal, instance=Part-1-1, generate + 1, 5, 1 +*Nset, nset=_PickedSet14, internal, instance=Part-1-1, generate + 61, 66, 1 +*Elset, elset=_PickedSet14, internal, instance=Part-1-1, generate + 46, 50, 1 +*Nset, nset=_PickedSet15, internal, instance=Part-1-1, generate + 1, 66, 1 +*Elset, elset=_PickedSet15, internal, instance=Part-1-1, generate + 1, 50, 1 +*Nset, nset=_PickedSet16, internal, instance=Part-1-1, generate + 1, 66, 1 +*Elset, elset=_PickedSet16, internal, instance=Part-1-1, generate + 1, 50, 1 +*Nset, nset=_PickedSet17, internal, instance=Part-1-1, generate + 1, 66, 1 +*Elset, elset=_PickedSet17, internal, instance=Part-1-1, generate + 1, 50, 1 +*Elset, elset=__PickedSurf12_S3, internal, instance=Part-1-1, generate + 46, 50, 1 +*Surface, type=ELEMENT, name=_PickedSurf12, internal +__PickedSurf12_S3, S3 +*Elset, elset=__PickedSurf13_S2, internal, instance=Part-1-1, generate + 5, 50, 5 +*Surface, type=ELEMENT, name=_PickedSurf13, internal +__PickedSurf13_S2, S2 +*Elset, elset=__PickedSurf18_S3, internal, instance=Part-1-1, generate + 46, 50, 1 +*Surface, type=ELEMENT, name=_PickedSurf18, internal +__PickedSurf18_S3, S3 +*End Assembly +*Amplitude, name=Amp-1 + 0., 0., 1., 1. +*Amplitude, name=Amp-2 + 0., 0., 1., 1. +** +** MATERIALS +** +*Material, name=Material-1 +*Density + 2.7e-06, +*Elastic,dependencies=1 +45., 0.2, 0. +75., 0.2, 100. +*Permeability, specific=10. + 1e-08, 0.3 +*Mohr Coulomb, dependencies=1 +30.,10., , 0. +40.,20., , 100. +*Mohr Coulomb Hardening + 0.2, 0., + 0.4, 0.05, + 0.6, 0.09, +** +** BOUNDARY CONDITIONS +** +** Name: Bottom-nodes Type: Symmetry/Antisymmetry/Encastre +*Boundary +_PickedSet8, YSYMM +** Name: Side-nodes Type: Symmetry/Antisymmetry/Encastre +*Boundary +_PickedSet7, XSYMM +** +** PREDEFINED FIELDS +** +** Name: Predefined Field-1 Type: Geostatic stress +*Initial Conditions, type=STRESS, GEOSTATIC +_PickedSet15, -0.221, 0., -0.221, 100., 1., 1. +** Name: Predefined Field-2 Type: Void ratio +*Initial Conditions, TYPE=RATIO +_PickedSet16, 0.3 +** Name: Predefined Field-3 Type: Pore pressure +*Initial Conditions, TYPE=PORE PRESSURE +_PickedSet17, 1. +** ---------------------------------------------------------------- +** +** STEP: Step-1 +** +*Step, name=Step-1 +*Geostatic +** +*FIELD, VARIABLE=1, USER +** +** +** LOADS +** +** Name: Side-Confining-Stress Type: Pressure +*Dsload +_PickedSurf13, P, 1.221 +** Name: Top-Confining-Stress Type: Pressure +*Dsload +_PickedSurf12, P, 1.221 +** +** OUTPUT REQUESTS +** +*Restart, write, frequency=0 +** +** FIELD OUTPUT: F-Output-1 +** +*Output, field, variable=PRESELECT +** +** HISTORY OUTPUT: H-Output-1 +** +*Output, history, variable=PRESELECT +*End Step +** ---------------------------------------------------------------- +** +** STEP: Step-2 +** +*Step, name=Step-2 +*Soils, consolidation, end=PERIOD, utol=1000. +0.01, 1., 1e-05, 0.01, +** +** BOUNDARY CONDITIONS +** +** Name: BC-4 Type: Displacement/Rotation +*Boundary, amplitude=Amp-1 +_PickedSet14, 2, 2, -50. +** +** OUTPUT REQUESTS +** +*Restart, write, frequency=0 +** +** FIELD OUTPUT: F-Output-1 +** +*Output, field, variable=PRESELECT +** +** HISTORY OUTPUT: H-Output-1 +** +*Output, history, variable=PRESELECT +*End Step diff --git a/test/data/meshio_meshes/abaqus/element_elset.inp b/test/data/meshio_meshes/abaqus/element_elset.inp new file mode 100644 index 000000000..42c197de9 --- /dev/null +++ b/test/data/meshio_meshes/abaqus/element_elset.inp @@ -0,0 +1,14 @@ +*Heading +Abaqus DataFile Version 6.14 +*Node +1, 1, 0, 0 +2, 1, 1, 0 +3, 2, 0.5, 0 +4, 0, 0.5, 0 +*Element, type=S3, ELSET=right +1, 1, 2, 3 +*Element, type=S3, ELSET=left +2, 1, 2, 4 +*Elset, elset=all +right +left \ No newline at end of file diff --git a/test/data/meshio_meshes/abaqus/nle1xf3c.inp b/test/data/meshio_meshes/abaqus/nle1xf3c.inp new file mode 100644 index 000000000..c25c5f3fd --- /dev/null +++ b/test/data/meshio_meshes/abaqus/nle1xf3c.inp @@ -0,0 +1,59 @@ +*HEADING +: NAFEMS TEST LE1, Plane Stress Elements -- Elliptic Membr. [CPS3] +*RESTART,WRITE +*NODE, NSET=CF000 + 1, 0.000000000E+00, 0.100000000E+01, 0.000000000E+00 + 2, 0.000000000E+00, 0.187500000E+01, 0.000000000E+00 + 3, 0.000000000E+00, 0.275000000E+01, 0.000000000E+00 + 4, 0.116500008E+01, 0.812829971E+00, 0.000000000E+00 + 5, 0.147400010E+01, 0.155601501E+01, 0.000000000E+00 + 6, 0.178300011E+01, 0.229920006E+01, 0.000000000E+00 + 7, 0.178302014E+01, 0.452999949E+00, 0.000000000E+00 + 8, 0.230790997E+01, 0.900500059E+00, 0.000000000E+00 + 9, 0.283279991E+01, 0.134800017E+01, 0.000000000E+00 + 10, 0.200000000E+01, 0.000000000E+00, 0.000000000E+00 + 11, 0.262500000E+01, 0.000000000E+00, 0.000000000E+00 + 12, 0.325000000E+01, 0.000000000E+00, 0.000000000E+00 +*ELEMENT, TYPE=CPS3, ELSET=M001P001 + 1, 5, 2, 1 + 2, 1, 4, 5 + 3, 8, 5, 4 + 4, 4, 7, 8 + 5, 11, 8, 7 + 6, 7, 10, 11 + 7, 6, 3, 2 + 8, 2, 5, 6 + 9, 9, 6, 5 + 10, 5, 8, 9 + 11, 12, 9, 8 + 12, 8, 11, 12 +*ELSET,ELSET=LOAD + 7,9,11 +*ELSET,ELSET=PR + 6, +*SOLID SECTION, ELSET=M001P001, MATERIAL=M001P001 +0.1000 , 5 +*MATERIAL, NAME=M001P001 +*ELASTIC, TYPE=ISO +0.2100E+06, 0.3000 , 0.0000E+00 +*STEP, AMP=RAMP +LOAD CASE 1 +*STATIC +*DLOAD, OP=NEW + LOAD,P1,-10.0 +*BOUNDARY, OP=NEW + 1, 1, , 0.0000E+00 + 2, 1, , 0.0000E+00 + 3, 1, , 0.0000E+00 + 10, 2, , 0.0000E+00 + 11, 2, , 0.0000E+00 + 12, 2, , 0.0000E+00 +*EL FILE, ELSET=PR, POSITION=AVERAGED AT NODES +S, +*NODE FILE, GLOBAL=YES +U, +*OUTPUT,FIELD +*NODE OUTPUT +U, +*EL PRINT,POS=AVERAGED AT NODES +*END STEP diff --git a/test/data/meshio_meshes/abaqus/wInclude_bulk.inp b/test/data/meshio_meshes/abaqus/wInclude_bulk.inp new file mode 100644 index 000000000..67e863df8 --- /dev/null +++ b/test/data/meshio_meshes/abaqus/wInclude_bulk.inp @@ -0,0 +1,13 @@ +*NODE + 1, 0.0, 0.0, 0.0 + 2, 1.0, 0.0, 0.0 + 3, 0.5, 0.0, 0.0 +*ELEMENT, type=B31 + 3, 1, 3 + 4, 3, 2 +*Elset, elset=elBm_set + 3, 4 +** Section: elBm_set Profile: elBm_set +*Beam Section, elset=elBm_set, material=Bm_mat, temperature=GRADIENT, section=I + 0.15, 0.3, 0.15, 0.15, 0.0107, 0.0107, 0.0071 + 0.0, -1.0, 0.0 \ No newline at end of file diff --git a/test/data/meshio_meshes/abaqus/wInclude_main.inp b/test/data/meshio_meshes/abaqus/wInclude_main.inp new file mode 100644 index 000000000..9bc75ad56 --- /dev/null +++ b/test/data/meshio_meshes/abaqus/wInclude_main.inp @@ -0,0 +1,7 @@ +*Heading +** meshio with *include example +*Preprint, echo=NO, model=NO, history=NO, contact=NO +*constraint controls, print=yes +*Part, name=ParametricModel +*INCLUDE,INPUT=wInclude_bulk.inp +*End Part \ No newline at end of file diff --git a/test/data/meshio_meshes/flac3d/flac3d_mesh_ex.f3grid b/test/data/meshio_meshes/flac3d/flac3d_mesh_ex.f3grid new file mode 100644 index 000000000..18d2ca105 --- /dev/null +++ b/test/data/meshio_meshes/flac3d/flac3d_mesh_ex.f3grid @@ -0,0 +1,307 @@ +* FLAC3D grid produced by FLAC3D 7.00 Release 118 +* Wed Aug 19 01:28:26 2020 +* GRIDPOINTS +G 1 0.00000000000000e+00 0.00000000000000e+00 0.00000000000000e+00 +G 2 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146 77 147 61 +Z W6 89 149 151 147 77 150 61 +Z W6 90 151 73 150 77 57 61 +Z B8 91 137 140 139 152 141 153 154 155 +Z B8 92 140 144 141 154 145 155 156 157 +Z B8 93 144 65 145 156 66 157 81 82 +Z B8 94 139 141 148 153 149 158 155 159 +Z B8 95 141 145 149 155 151 159 157 160 +Z B8 96 145 66 151 157 73 160 82 89 +Z W6 97 158 159 148 93 149 77 +Z W6 98 159 160 149 93 151 77 +Z W6 99 160 89 151 93 73 77 +Z P5 100 152 154 153 97 155 +Z P5 101 154 156 155 97 157 +Z P5 102 156 81 157 97 82 +Z P5 103 153 155 158 97 159 +Z P5 104 155 157 159 97 160 +Z P5 105 157 82 160 97 89 +Z T4 106 158 159 93 97 +Z T4 107 159 160 93 97 +Z T4 108 160 89 93 97 +* ZONE GROUPS +ZGROUP "Brick1" SLOT "Default" + 6 7 4 5 2 3 1 14 15 12 13 10 11 8 9 22 23 20 21 18 + 19 16 17 26 27 24 25 +ZGROUP "Pyramid2" SLOT "Default" + 38 39 36 37 34 35 32 33 46 47 44 45 42 43 40 41 54 52 30 53 + 31 50 28 51 29 48 49 +ZGROUP "Tetrahedron4" SLOT "Default" + 101 98 99 96 97 108 86 87 106 84 107 85 104 82 105 83 94 95 92 93 + 90 91 88 89 102 103 100 +ZGROUP "Wedge3" SLOT "Default" + 56 78 57 79 76 77 74 75 72 73 80 81 55 70 71 68 62 63 69 60 + 66 61 67 58 64 59 65 +* FACES +F Q4 1 1 3 6 4 +F Q4 2 3 17 19 6 +F Q4 3 17 25 27 19 +F Q4 4 4 6 34 33 +F Q4 5 6 19 41 34 +F Q4 6 19 27 45 41 +F Q4 7 33 34 50 49 +F Q4 8 34 41 57 50 +F Q4 9 41 45 61 57 +F Q4 10 135 138 136 134 +F Q4 11 142 143 138 135 +F Q4 12 49 50 143 142 +F Q4 13 138 147 146 136 +F Q4 14 143 150 147 138 +F Q4 15 50 57 150 143 +F T3 16 146 147 61 +F T3 17 147 150 61 +F T3 18 150 57 61 +* FACE GROUPS +FGROUP "bottom" SLOT "Default" + 6 7 4 5 2 3 1 14 15 12 13 10 11 8 9 18 16 17 diff --git a/test/data/meshio_meshes/flac3d/flac3d_mesh_ex_bin.f3grid b/test/data/meshio_meshes/flac3d/flac3d_mesh_ex_bin.f3grid new file mode 100644 index 000000000..ff3406940 Binary files /dev/null and b/test/data/meshio_meshes/flac3d/flac3d_mesh_ex_bin.f3grid differ diff --git a/test/data/meshio_meshes/med/README.md b/test/data/meshio_meshes/med/README.md new file mode 100644 index 000000000..aedac705b --- /dev/null +++ b/test/data/meshio_meshes/med/README.md @@ -0,0 +1,54 @@ +`cylinder.med` is first generated by salome 9.2.2. The mesh version is then modified by HDFView by changing the mesh version from 4.0.0 to 3.0.0 so that it can also be read in gmsh. + +`box.med` is generated by code_aster 13.6 using the following command file. A specific displacement field is prescribed to an orthotropic hexahedral element, and we verify if meshio is able to read the current stress/strain/energy data. + +``` +DEBUT() + +mesh = LIRE_MAILLAGE(FORMAT='MED', INFO=2, UNITE=20) + +mesh = DEFI_GROUP( + reuse=mesh, MAILLAGE=mesh, + CREA_GROUP_NO=(_F(NOM='Left', NOEUD=('N1', 'N2', 'N3', 'N4')), + _F(NOM='Right', NOEUD=('N5', 'N6', 'N7', 'N8')))) + +model = AFFE_MODELE( + AFFE=_F(MODELISATION=('3D', ), PHENOMENE='MECANIQUE', TOUT='OUI'), + MAILLAGE=mesh +) + +mat = DEFI_MATERIAU( + ELAS_ORTH=_F(RHO=1.37486e-09, E_L=5329.16, E_T=2418.93, E_N=1746.66, + G_LT=1202.6, G_TN=515.638, G_LN=569.752, + NU_LT=0.450006, NU_TN=0.564862, NU_LN=0.397544, + ALPHA_L=1.0163e-05, ALPHA_T=2.67311e-05, ALPHA_N=6.86122e-05)) + +load = AFFE_CHAR_MECA( + MODELE=model, DDL_IMPO=(_F(GROUP_NO='Left', DX=0, DY=0, DZ=0), + _F(GROUP_NO='Right', DX=1, DY=1, DZ=1)) +) + +fieldmat = AFFE_MATERIAU( + AFFE=_F(MATER=(mat, ), TOUT='OUI'), + MODELE=model +) + +resu = MECA_STATIQUE( + CHAM_MATER=fieldmat, + EXCIT=_F(CHARGE=load), + MODELE=model, + OPTION='SANS', + SOLVEUR=_F(METHODE='MUMPS') +) + +resu = CALC_CHAMP( + reuse=resu, RESULTAT=resu, CONTRAINTE='SIEF_ELNO', DEFORMATION='EPSI_ELNO', ENERGIE=('ENEL_ELEM', 'ENEL_ELNO')) + +IMPR_RESU( + FORMAT='MED', + RESU=_F(RESULTAT=resu), + UNITE=80 +) + +FIN() +``` diff --git a/test/data/meshio_meshes/med/box.med b/test/data/meshio_meshes/med/box.med new file mode 100644 index 000000000..39562abf2 Binary files /dev/null and b/test/data/meshio_meshes/med/box.med differ diff --git a/test/data/meshio_meshes/med/cylinder.med b/test/data/meshio_meshes/med/cylinder.med new file mode 100644 index 000000000..86c6ac1f4 Binary files /dev/null and b/test/data/meshio_meshes/med/cylinder.med differ diff --git a/test/data/meshio_meshes/medit/cube86.mesh b/test/data/meshio_meshes/medit/cube86.mesh new file mode 100644 index 000000000..504f99873 --- /dev/null +++ b/test/data/meshio_meshes/medit/cube86.mesh @@ -0,0 +1,211 @@ +MeshVersionFormatted 1 + +Dimension +3 +#Mesh generated by GAMBIT converted by GAMBIT_to_LifeV (Martin P.) + +Vertices +39 +1 0 1 6 +1 0 0 4 +1 0 0.5 3 +1 1 0 5 +1 0.5 0 4 +1 1 1 6 +1 1 0.5 5 +1 0.5 1 6 +1 0.707565 0.707566 3 +1 0.292433 0.292434 3 +1 0.652965 0.347034 3 +1 0.347033 0.652966 3 +0 1 0 5 +0.5 1 0 5 +0 1 1 6 +0 1 0.5 5 +0.5 1 1 6 +0.292435 1 0.707566 5 +0.707567 1 0.292434 5 +0.347035 1 0.347034 5 +0.652967 1 0.652966 5 +0 0 0 4 +0 0.5 0 4 +0 0 1 6 +0 0 0.5 2 +0 0.5 1 6 +0 0.292435 0.707566 1 +0 0.707567 0.292434 1 +0 0.347035 0.347034 1 +0 0.652967 0.652966 1 +0.5 0 0 4 +0.5 0 1 6 +0.707565 0 0.707566 2 +0.292433 0 0.292434 2 +0.652965 0 0.347034 2 +0.347033 0 0.652966 2 +0.581989 0.58199 0 4 +0.581989 0.41801 1 6 +0.646741 0.569188 0.569188 0 + +Tetrahedra +86 +32 1 33 38 1 +32 36 38 33 1 +12 33 1 38 1 +12 33 3 1 1 +12 1 8 38 1 +27 32 36 38 1 +27 36 32 24 1 +27 32 38 26 1 +35 3 12 33 1 +35 10 12 3 1 +30 26 27 38 1 +27 25 36 24 1 +27 24 32 26 1 +18 26 30 38 1 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mode 100644 index 000000000..46f9e232e Binary files /dev/null and b/test/data/meshio_meshes/medit/hch_strct.4.be.meshb differ diff --git a/test/data/meshio_meshes/medit/hch_strct.4.meshb b/test/data/meshio_meshes/medit/hch_strct.4.meshb new file mode 100644 index 000000000..57e1b9a99 Binary files /dev/null and b/test/data/meshio_meshes/medit/hch_strct.4.meshb differ diff --git a/test/data/meshio_meshes/medit/sphere_mixed.1.meshb b/test/data/meshio_meshes/medit/sphere_mixed.1.meshb new file mode 100644 index 000000000..de016406a Binary files /dev/null and b/test/data/meshio_meshes/medit/sphere_mixed.1.meshb differ diff --git a/test/data/meshio_meshes/msh/Makefile b/test/data/meshio_meshes/msh/Makefile new file mode 100644 index 000000000..32c81f51a --- /dev/null +++ b/test/data/meshio_meshes/msh/Makefile @@ -0,0 +1,5 @@ +%-2.2.msh: %.geo + gmsh -2 -format msh2 -o $@ $< +%-4.1.msh: %.geo + gmsh -2 -o $@ $< +all: insulated-2.2.msh insulated-4.1.msh diff --git a/test/data/meshio_meshes/msh/README.md b/test/data/meshio_meshes/msh/README.md new file mode 100644 index 000000000..578ca8b67 --- /dev/null +++ b/test/data/meshio_meshes/msh/README.md @@ -0,0 +1,5 @@ +Two versions of the Gmsh MSH format are covered here: 2.2 and 4.1. + +The meshes were generated by Gmsh 4.2.2-git-0766f664d from the same Gmsh GEO file `insulated.geo` as shown in the `Makefile` (`make -j2`); the difference is that the first was passed `-format msh2`, MSH4.1 being the default. + +The meshes are coarse versions of a real finite element example and contain 111 3-node triangular domain elements, divided into two Physical Surfaces, and 21 2-node line boundary elements, in a single Physical Line. \ No newline at end of file diff --git a/test/data/meshio_meshes/msh/insulated-2.2.msh b/test/data/meshio_meshes/msh/insulated-2.2.msh new file mode 100644 index 000000000..2315acb89 --- /dev/null +++ b/test/data/meshio_meshes/msh/insulated-2.2.msh @@ -0,0 +1,214 @@ +$MeshFormat 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file. It contains the same mesh information as that in `../med/cylinder.med`. diff --git a/test/data/meshio_meshes/nastran/cylinder.fem b/test/data/meshio_meshes/nastran/cylinder.fem new file mode 100644 index 000000000..30149d99e --- /dev/null +++ b/test/data/meshio_meshes/nastran/cylinder.fem @@ -0,0 +1,245 @@ +$$ +$$ Optistruct Input Deck Generated by HyperMesh Version : 2017.3.0.17 +$$ Generated using HyperMesh-Optistruct Template Version : 2017.3 +$$ +$$ Template: optistruct +$$ +$$ +$$ optistruct +$ +$$------------------------------------------------------------------------------$ +$$ Case Control Cards $ +$$------------------------------------------------------------------------------$ +$$-------------------------------------------------------------- +$$ HYPERMESH TAGS +$$-------------------------------------------------------------- +$$BEGIN TAGS +$$END TAGS +$ +BEGIN BULK +$$ +$$ Stacking Information for Ply-Based Composite Definition +$$ + + + + + +$$ +$$ GRID Data +$$ +GRID 1 1.0 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0.0 0.0 +CBAR 38 4 31.0 0.0 0.0 +CBAR 39 5 41.0 0.0 0.0 +CBAR 40 6 51.0 0.0 0.0 +CBAR 41 7 61.0 0.0 0.0 +CBAR 42 8 71.0 0.0 0.0 +CBAR 43 9 81.0 0.0 0.0 +CBAR 44 1 91.0 0.0 0.0 +CBAR 45 2 101.0 0.0 0.0 +CBAR 46 10 111.0 0.0 0.0 +CBAR 47 11 121.0 0.0 0.0 +CBAR 48 12 131.0 0.0 0.0 +CBAR 49 13 141.0 0.0 0.0 +CBAR 50 14 151.0 0.0 0.0 +CBAR 51 15 161.0 0.0 0.0 +CBAR 52 16 21.0 0.0 0.0 +CBAR 53 1 21.0 0.0 0.0 +$ +$HMMOVE 1 +$ 37THRU 53 +$$ +$$ CTRIA3 Data +$$ +CTRIA3 117 0 1 9 17 +CTRIA3 118 0 17 19 18 +CTRIA3 119 0 16 2 21 +CTRIA3 120 0 22 21 20 +$ +$HMMOVE 1 +$ 117THRU 120 +$$ +$$ CQUAD4 Elements +$$ +CQUAD4 19 0 3 1 17 18 +CQUAD4 20 0 4 3 18 5 +CQUAD4 21 0 6 5 18 19 +CQUAD4 22 0 7 6 19 8 +CQUAD4 23 0 9 8 19 17 +CQUAD4 24 0 2 10 20 21 +CQUAD4 25 0 10 11 12 20 +CQUAD4 26 0 12 13 22 20 +CQUAD4 27 0 13 14 15 22 +CQUAD4 28 0 15 16 21 22 +CQUAD4 29 0 11 10 3 4 +CQUAD4 30 0 13 12 5 6 +CQUAD4 31 0 14 13 6 7 +CQUAD4 32 0 16 15 8 9 +CQUAD4 33 0 2 16 9 1 +CQUAD4 34 0 1 3 10 2 +CQUAD4 35 0 5 12 11 4 +CQUAD4 36 0 8 15 14 7 +$ +$HMMOVE 1 +$ 19THRU 36 +$$ +$$ CPYRA Elements 5-noded +$$ +CPYRA 1 0 11 4 3 10 29 +CPYRA 2 0 13 6 5 12 24 +CPYRA 3 0 14 7 6 13 25 +CPYRA 4 0 16 9 8 15 26 +CPYRA 5 0 2 1 9 16 27 +CPYRA 6 0 1 2 10 3 28 +CPYRA 7 0 5 4 11 12 29 +CPYRA 8 0 8 7 14 15 25 +CPYRA 9 0 2 21 20 10 28 +CPYRA 10 0 10 20 12 11 29 +CPYRA 11 0 12 20 22 13 24 +CPYRA 12 0 13 22 15 14 25 +CPYRA 13 0 15 22 21 16 26 +CPYRA 14 0 3 18 17 1 28 +CPYRA 15 0 4 5 18 3 29 +CPYRA 16 0 6 19 18 5 24 +CPYRA 17 0 7 8 19 6 25 +CPYRA 18 0 9 17 19 8 26 +$ +$HMMOVE 1 +$ 1THRU 18 +$$ +$$ CTETRA elements 4-noded +$$ +CTETRA 54 0 29 30 27 20 +CTETRA 55 0 23 8 25 19 +CTETRA 56 0 15 25 22 23 +CTETRA 57 0 5 18 29 30 +CTETRA 58 0 23 27 33 22 +CTETRA 59 0 16 2 27 21 +CTETRA 60 0 32 19 17 26 +CTETRA 61 0 17 19 27 18 +CTETRA 62 0 31 10 29 20 +CTETRA 63 0 27 2 28 21 +CTETRA 64 0 17 1 28 27 +CTETRA 65 0 27 20 22 21 +CTETRA 66 0 32 26 17 9 +CTETRA 67 0 31 20 29 27 +CTETRA 68 0 28 20 27 21 +CTETRA 69 0 27 24 22 20 +CTETRA 70 0 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17 32 +CTETRA 111 0 27 32 17 9 +CTETRA 112 0 16 21 27 32 +CTETRA 113 0 19 25 33 6 +CTETRA 114 0 24 27 22 33 +CTETRA 115 0 23 19 33 27 +CTETRA 116 0 19 6 33 24 +$ +$HMMOVE 1 +$ 54THRU 116 +$$ +$$------------------------------------------------------------------------------$ +$$ HyperMesh name and color information for generic components $ +$$------------------------------------------------------------------------------$ +$HMNAME COMP 1"misc1" +$HWCOLOR COMP 1 11 +$ + +$ + +$ +$$ +$$------------------------------------------------------------------------------$ +$$ HyperMesh Commands for loadcollectors name and color information $ +$$------------------------------------------------------------------------------$ +ENDDATA +$$ +$$------------------------------------------------------------------------------$$ +$$ Data Definition for AutoDV $$ +$$------------------------------------------------------------------------------$$ +$$ +$$-----------------------------------------------------------------------------$$ +$$ Design Variables Card for Control Perturbations $$ +$$-----------------------------------------------------------------------------$$ +$$ +$$------------------------------------------------------------------------------$ +$$ Domain Element Definitions $ +$$------------------------------------------------------------------------------$ +$$ +$$------------------------------------------------------------------------------$$ +$$ Control Perturbation $$ +$$------------------------------------------------------------------------------$$ diff --git a/test/data/meshio_meshes/nastran/cylinder_cells_first.fem b/test/data/meshio_meshes/nastran/cylinder_cells_first.fem new file mode 100644 index 000000000..f5ed46719 --- /dev/null +++ b/test/data/meshio_meshes/nastran/cylinder_cells_first.fem @@ -0,0 +1,245 @@ +$$ +$$ Optistruct Input Deck Generated by HyperMesh Version : 2017.3.0.17 +$$ Generated using HyperMesh-Optistruct Template Version : 2017.3 +$$ +$$ Template: optistruct +$$ +$$ +$$ optistruct +$ +$$------------------------------------------------------------------------------$ +$$ Case Control Cards $ +$$------------------------------------------------------------------------------$ +$$-------------------------------------------------------------- +$$ HYPERMESH TAGS +$$-------------------------------------------------------------- +$$BEGIN TAGS +$$END TAGS +$ +BEGIN BULK +$$ +$$ Stacking Information for Ply-Based Composite Definition +$$ + + + + + +$$ +$$ CBAR Elements +$$ +CBAR 37 3 11.0 0.0 0.0 +CBAR 38 4 31.0 0.0 0.0 +CBAR 39 5 41.0 0.0 0.0 +CBAR 40 6 51.0 0.0 0.0 +CBAR 41 7 61.0 0.0 0.0 +CBAR 42 8 71.0 0.0 0.0 +CBAR 43 9 81.0 0.0 0.0 +CBAR 44 1 91.0 0.0 0.0 +CBAR 45 2 101.0 0.0 0.0 +CBAR 46 10 111.0 0.0 0.0 +CBAR 47 11 121.0 0.0 0.0 +CBAR 48 12 131.0 0.0 0.0 +CBAR 49 13 141.0 0.0 0.0 +CBAR 50 14 151.0 0.0 0.0 +CBAR 51 15 161.0 0.0 0.0 +CBAR 52 16 21.0 0.0 0.0 +CBAR 53 1 21.0 0.0 0.0 +$ +$HMMOVE 1 +$ 37THRU 53 +$$ +$$ CTRIA3 Data +$$ +CTRIA3 117 0 1 9 17 +CTRIA3 118 0 17 19 18 +CTRIA3 119 0 16 2 21 +CTRIA3 120 0 22 21 20 +$ +$HMMOVE 1 +$ 117THRU 120 +$$ +$$ CQUAD4 Elements +$$ +CQUAD4 19 0 3 1 17 18 +CQUAD4 20 0 4 3 18 5 +CQUAD4 21 0 6 5 18 19 +CQUAD4 22 0 7 6 19 8 +CQUAD4 23 0 9 8 19 17 +CQUAD4 24 0 2 10 20 21 +CQUAD4 25 0 10 11 12 20 +CQUAD4 26 0 12 13 22 20 +CQUAD4 27 0 13 14 15 22 +CQUAD4 28 0 15 16 21 22 +CQUAD4 29 0 11 10 3 4 +CQUAD4 30 0 13 12 5 6 +CQUAD4 31 0 14 13 6 7 +CQUAD4 32 0 16 15 8 9 +CQUAD4 33 0 2 16 9 1 +CQUAD4 34 0 1 3 10 2 +CQUAD4 35 0 5 12 11 4 +CQUAD4 36 0 8 15 14 7 +$ +$HMMOVE 1 +$ 19THRU 36 +$$ +$$ CPYRA Elements 5-noded +$$ +CPYRA 1 0 11 4 3 10 29 +CPYRA 2 0 13 6 5 12 24 +CPYRA 3 0 14 7 6 13 25 +CPYRA 4 0 16 9 8 15 26 +CPYRA 5 0 2 1 9 16 27 +CPYRA 6 0 1 2 10 3 28 +CPYRA 7 0 5 4 11 12 29 +CPYRA 8 0 8 7 14 15 25 +CPYRA 9 0 2 21 20 10 28 +CPYRA 10 0 10 20 12 11 29 +CPYRA 11 0 12 20 22 13 24 +CPYRA 12 0 13 22 15 14 25 +CPYRA 13 0 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444 437 +3 259 341 448 +3 297 425 391 +3 442 125 445 +3 450 106 452 +3 410 350 306 +3 341 259 223 +3 355 417 350 +3 410 355 350 +3 259 64 223 +3 410 356 350 +3 356 410 350 +3 356 355 410 +3 355 419 417 +3 247 13 99 +3 195 112 183 +3 180 112 195 +3 419 355 356 +3 301 425 297 +3 390 386 411 +3 446 259 448 +3 446 261 259 +3 434 436 422 +3 421 420 422 +3 409 410 306 +3 368 409 306 +3 412 356 410 +3 409 412 410 +3 442 445 436 +3 435 423 430 diff --git a/test/data/meshio_meshes/ply/tet.ply b/test/data/meshio_meshes/ply/tet.ply new file mode 100644 index 000000000..7c52c703b --- /dev/null +++ b/test/data/meshio_meshes/ply/tet.ply @@ -0,0 +1,22 @@ +ply +format ascii 1.0 +comment single tetrahedron with colored faces +element vertex 4 +comment tetrahedron vertices +property float x +property float y +property float z +element face 4 +property list uchar int vertex_indices +property uchar red +property uchar green +property uchar blue +end_header +0 0 0 +0 1 1 +1 0 1 +1 1 0 +3 0 1 2 255 255 255 +3 0 2 3 255 0 0 +3 0 1 3 0 255 0 +3 1 2 3 0 0 255 diff --git a/test/data/meshio_meshes/su2/README.md b/test/data/meshio_meshes/su2/README.md new file mode 100644 index 000000000..7f19aef9d --- /dev/null +++ b/test/data/meshio_meshes/su2/README.md @@ -0,0 +1,2 @@ +* `square.su2` : from https://su2code.github.io/docs_v7/Mesh-File/ +* `mixgrid.su2` : generated using http://ossanworld.com/cfdbooks/cfdcodes/mixgrid_cube_v5.f90 diff --git a/test/data/meshio_meshes/su2/mixgrid.su2 b/test/data/meshio_meshes/su2/mixgrid.su2 new file mode 100644 index 000000000..e5469954d --- /dev/null +++ b/test/data/meshio_meshes/su2/mixgrid.su2 @@ -0,0 +1,73 @@ + % + % Problem dimension + % +NDIME= 3 + % + % Inner element connectivity +NELEM= 10 + 10 2 6 3 11 0 + 10 6 7 3 11 1 + 10 14 10 11 6 2 + 10 14 11 15 6 3 + 10 2 10 6 11 4 + 10 6 15 7 11 5 + 13 4 8 0 5 9 1 6 + 13 12 8 4 13 9 5 7 + 13 5 9 1 6 10 2 8 + 13 13 9 5 14 10 6 9 + % + % Node coordinates + % +NPOIN= 16 + 0.000000000000000E+00 0.000000000000000E+00 0.000000000000000E+00 + 0.000000000000000E+00 0.000000000000000E+00 1.500000000000000E-01 + 0.000000000000000E+00 0.000000000000000E+00 3.000000000000000E-01 + 0.000000000000000E+00 0.000000000000000E+00 1.000000000000000E+00 + 0.000000000000000E+00 1.000000000000000E+00 0.000000000000000E+00 + 0.000000000000000E+00 1.000000000000000E+00 1.500000000000000E-01 + 0.000000000000000E+00 1.000000000000000E+00 3.000000000000000E-01 + 0.000000000000000E+00 1.000000000000000E+00 1.000000000000000E+00 + 1.000000000000000E+00 0.000000000000000E+00 0.000000000000000E+00 + 1.000000000000000E+00 0.000000000000000E+00 1.500000000000000E-01 + 1.000000000000000E+00 0.000000000000000E+00 3.000000000000000E-01 + 1.000000000000000E+00 0.000000000000000E+00 1.000000000000000E+00 + 1.000000000000000E+00 1.000000000000000E+00 0.000000000000000E+00 + 1.000000000000000E+00 1.000000000000000E+00 1.500000000000000E-01 + 1.000000000000000E+00 1.000000000000000E+00 3.000000000000000E-01 + 1.000000000000000E+00 1.000000000000000E+00 1.000000000000000E+00 + % + % Boundary elements + % +NMARK= 6 +MARKER_TAG= xmin +MARKER_ELEMS= 4 + 5 6 7 3 + 5 6 3 2 + 9 0 4 5 1 + 9 1 5 6 2 +MARKER_TAG= xmax +MARKER_ELEMS= 4 + 5 14 10 11 + 5 14 11 15 + 9 12 8 9 13 + 9 13 9 10 14 +MARKER_TAG= ymin +MARKER_ELEMS= 4 + 5 2 3 11 + 5 2 11 10 + 9 8 0 1 9 + 9 9 1 2 10 +MARKER_TAG= ymax +MARKER_ELEMS= 4 + 5 6 14 15 + 5 6 15 7 + 9 4 12 13 5 + 9 5 13 14 6 +MARKER_TAG= zmin +MARKER_ELEMS= 2 + 5 4 0 8 + 5 4 8 12 +MARKER_TAG= zmax +MARKER_ELEMS= 2 + 5 7 15 11 + 5 7 11 3 diff --git a/test/data/meshio_meshes/su2/square.su2 b/test/data/meshio_meshes/su2/square.su2 new file mode 100644 index 000000000..033f3f4fa --- /dev/null +++ b/test/data/meshio_meshes/su2/square.su2 @@ -0,0 +1,49 @@ +% +% Problem dimension +% +NDIME= 2 +% +% Inner element connectivity +% +NELEM= 8 +5 0 1 3 0 +5 1 4 3 1 +5 1 2 4 2 +5 2 5 4 3 +5 3 4 6 4 +5 4 7 6 5 +5 4 5 7 6 +5 5 8 7 7 +% +% Node coordinates +% +NPOIN= 9 +0.00000000000000 0.00000000000000 0 +0.50000000000000 0.00000000000000 1 +1.00000000000000 0.00000000000000 2 +0.00000000000000 0.50000000000000 3 +0.50000000000000 0.50000000000000 4 +1.00000000000000 0.50000000000000 5 +0.00000000000000 1.00000000000000 6 +0.50000000000000 1.00000000000000 7 +1.00000000000000 1.00000000000000 8 +% +% Boundary elements +% +NMARK= 4 +MARKER_TAG= lower +MARKER_ELEMS= 2 +3 0 1 +3 1 2 +MARKER_TAG= right +MARKER_ELEMS= 2 +3 2 5 +3 5 8 +MARKER_TAG= upper +MARKER_ELEMS= 2 +3 8 7 +3 7 6 +MARKER_TAG= left +MARKER_ELEMS= 2 +3 6 3 +3 3 0 diff --git a/test/data/meshio_meshes/tecplot/quad_zone_comma.tec b/test/data/meshio_meshes/tecplot/quad_zone_comma.tec new file mode 100644 index 000000000..aea13be18 --- /dev/null +++ b/test/data/meshio_meshes/tecplot/quad_zone_comma.tec @@ -0,0 +1,14 @@ +TITLE = "Zone and variables separated by commas" +VARIABLES = X, Y, "foo bar", foobar +# Random comment +ZONE N=4, E =1,ET= QUADRILATERAL , T = "Hex with commas" +# Random comment +, F = FEBLOCK, VARLOCATION =( [4]= CELLCENTERED ) + 0.0 1.0 1.0 0.0 + 0.0 0.0 1.0 1.0 +# Random comment + 1.0 2.0 3.0 4.0 +# Random comment + 42.0 +# Random comment + 1 2 3 4 \ No newline at end of file diff --git a/test/data/meshio_meshes/tecplot/quad_zone_multivar.tec b/test/data/meshio_meshes/tecplot/quad_zone_multivar.tec new file mode 100644 index 000000000..e5e8d0379 --- /dev/null +++ b/test/data/meshio_meshes/tecplot/quad_zone_multivar.tec @@ -0,0 +1,16 @@ +TITLE = "Zone and variables separated by commas" +VARIABLES = "X", "Y", +"foo bar", +"foobar" +# Random comment +ZONE N=4, E =1,ET= QUADRILATERAL , T = "Hex with commas" +# Random comment +, F = FEBLOCK, VARLOCATION =( [4]= CELLCENTERED ) + 0.0 1.0 1.0 0.0 + 0.0 0.0 1.0 1.0 +# Random comment + 1.0 2.0 3.0 4.0 +# Random comment + 42.0 +# Random comment + 1 2 3 4 \ No newline at end of file diff --git a/test/data/meshio_meshes/tecplot/quad_zone_space.tec b/test/data/meshio_meshes/tecplot/quad_zone_space.tec new file mode 100644 index 000000000..e87b8c456 --- /dev/null +++ b/test/data/meshio_meshes/tecplot/quad_zone_space.tec @@ -0,0 +1,14 @@ +TITLE = "Zone and variables separated by white spaces" +VARIABLES = X Y "foo bar" foobar +# Random comment +ZONE T = "VARLOCATION" N=4 E =1 ET= QUADRILATERAL +# Random comment + F = FEBLOCK VARLOCATION =( [4]= CELLCENTERED ) + 0.0 1.0 1.0 0.0 + 0.0 0.0 1.0 1.0 +# Random comment + 1.0 2.0 3.0 4.0 +# Random comment + 42.0 +# Random comment + 1 2 3 4 \ No newline at end of file diff --git a/test/data/meshio_meshes/tetgen/mesh.ele b/test/data/meshio_meshes/tetgen/mesh.ele new file mode 100644 index 000000000..03e96e3f2 --- /dev/null +++ b/test/data/meshio_meshes/tetgen/mesh.ele @@ -0,0 +1,307 @@ +# This file was created by meshio v4.1.0 +# attribute names: medit:ref +304 4 1 +0 41 35 40 42 2 +1 50 36 46 45 2 +2 40 54 41 42 2 +3 41 54 44 43 2 +4 56 40 35 38 2 +5 55 51 50 37 2 +6 42 35 40 38 2 +7 50 51 55 36 2 +8 54 41 48 43 2 +9 52 56 35 38 2 +10 46 36 49 45 2 +11 41 48 43 42 2 +12 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/dev/null +++ b/test/data/meshio_meshes/ugrid/pyra_cube.ugrid @@ -0,0 +1,16 @@ +9 0 0 0 6 0 0 +0.0 0.0 0.0 +1.0 0.0 0.0 +0.0 1.0 0.0 +1.0 1.0 0.0 +0.0 0.0 1.0 +1.0 0.0 1.0 +0.0 1.0 1.0 +1.0 1.0 1.0 +0.5 0.5 0.5 +2 1 9 4 3 +6 8 9 5 7 +6 2 9 8 4 +5 1 9 6 2 +3 1 9 7 5 +7 8 9 3 4 diff --git a/test/data/meshio_meshes/ugrid/sphere_mixed.1.lb8.ugrid b/test/data/meshio_meshes/ugrid/sphere_mixed.1.lb8.ugrid new file mode 100644 index 000000000..cb0c29ca3 Binary files /dev/null and b/test/data/meshio_meshes/ugrid/sphere_mixed.1.lb8.ugrid differ diff --git a/test/data/meshio_meshes/vtk/00_image.vtk b/test/data/meshio_meshes/vtk/00_image.vtk new file mode 100644 index 000000000..2eb4fc001 --- /dev/null +++ b/test/data/meshio_meshes/vtk/00_image.vtk @@ -0,0 +1,110 @@ +# vtk DataFile Version 3.4 +Image +ASCII +DATASET STRUCTURED_POINTS +DIMENSIONS 10 10 1 +ORIGIN 0.0 0.0 0.0 +SPACING 0.5 0.5 0.0 +POINT_DATA 100 +SCALARS transmissivity float 1 +LOOKUP_TABLE default +0.298739662586 +0.279131445489 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+0.255948616943 +0.169888780058 +0.131652207091 +0.164775824684 +0.225934163991 +0.235147380819 +0.306821054112 +0.26003544081 +0.247473520841 +0.24507626514 +0.199585971691 +0.146278300724 +0.146749272746 +0.227855782454 +0.243324810464 +0.263984406253 +0.202267248848 +0.185525164757 +0.207851666271 +0.22789498338 +0.175890885834 +0.158555750876 +0.251900632165 +0.213176490915 +0.204000194234 +0.250290544772 +0.2187337482 +0.211795398808 +0.185664474197 +0.174563178783 +0.174648363874 +0.166720082135 +0.12097483942 +0.122984046496 +0.205734861691 diff --git a/test/data/meshio_meshes/vtk/01_image.vtk b/test/data/meshio_meshes/vtk/01_image.vtk new file mode 100644 index 000000000..b0990f402 --- /dev/null +++ b/test/data/meshio_meshes/vtk/01_image.vtk @@ -0,0 +1,79 @@ +# vtk DataFile Version 4.2 +vtk output +ASCII +DATASET STRUCTURED_POINTS +DIMENSIONS 7 7 3 +ASPECT_RATIO 1 1 1 +ORIGIN 0 0 0 +CELL_DATA 72 +FIELD FieldData 2 +pressure1 1 72 double +0.8677104542 0.51636185155 0.60688284218 0.46963710959 0.84631932221 0.19738233512 0.10449260542 0.13325513899 0.1261254424 +0.92811591687 0.85276551296 0.87436138227 0.57021773734 0.64484045379 0.83211192182 0.91742765699 0.78576559398 0.61298629515 +0.6735725119 0.95343444683 0.94452291226 0.75495718491 0.92715036051 0.41195114237 0.16643423413 0.77370647925 0.87340165423 +0.25739115973 0.25705504591 0.31147847687 0.7299432699 0.70197478982 0.1637118679 0.3955116108 0.5419513408 0.043992262805 +0.63705083954 0.15316737283 0.81736094123 0.62336803143 0.50731765079 0.11081170015 0.56418617227 0.91414438791 0.052267630295 +0.11663225967 0.98749503289 0.61230653547 0.95160106712 0.36307324908 0.93814204076 0.47078090661 0.3778094117 0.98835590606 +0.041782676901 0.41421973924 0.51073980308 0.84948398985 0.70052446738 0.064860319334 0.36908298368 0.55362015347 0.13069604232 +0.11563651603 0.034805442219 0.22238653602 0.24687431521 0.94102825318 0.89631139818 0.49057691045 0.83937323407 0.40715670809 + +METADATA +INFORMATION 0 + 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0.49057691045 0.83937323407 0.40715670809 + +METADATA +INFORMATION 0 + +POINT_DATA 147 +FIELD FieldData 2 +temp1 1 147 double +0.19932609943 0.080484975432 0.62271676952 0.17526854106 0.85265478881 0.20618656795 0.84349132399 0.038892471051 0.90607584362 +0.53145615434 0.31918008657 0.20474882787 0.026379692258 0.48104509843 0.50001234209 0.045244591207 0.83508077518 0.47561534276 +0.40962142531 0.0011841612877 0.14709018583 0.75095831727 0.48417916779 0.18271087896 0.54656071738 0.75066701975 0.92200696569 +0.99769339208 0.26117515176 0.085311465967 0.1646683261 0.81218612228 0.63122274863 0.56536002542 0.61634033728 0.51835579684 +0.4278608922 0.630029077 0.61492773995 0.54908405353 0.7708722292 0.25359302007 0.70233431709 0.61075920411 0.9125950554 +0.55867195058 0.028337602721 0.75342955411 0.35627445538 0.65575668043 0.10189677317 0.81150143817 0.61299601434 0.21606925506 +0.60478711464 0.83937102764 0.85003752009 0.044045564549 0.46397193546 0.76703318221 0.060487798272 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0.49451340436 0.46994311507 0.20945743958 0.90180499386 0.5882724815 0.59257716926 0.36687922328 0.031175163596 +0.59139143764 0.22074049374 0.25009561491 0.42839567802 0.73397672723 0.27750910732 0.10343172891 0.29795508391 0.5824967726 +0.49255555201 0.41040440901 0.51740971604 0.27642443648 0.17821611139 0.51489622537 0.11142441873 0.96543388855 0.82264080865 +0.15457351543 0.351476427 0.1313250572 0.3373358227 0.97473064492 0.72094042884 0.84408819099 0.82331232023 0.52003273245 +0.97129609052 0.55093322641 0.60515474675 0.37546482768 0.17590731957 0.30494883209 0.068149684854 0.11239873611 0.88408229271 +0.2256313757 0.91498208381 0.71068656904 +METADATA +INFORMATION 0 + diff --git a/test/data/meshio_meshes/vtk/03_rectilinear.vtk b/test/data/meshio_meshes/vtk/03_rectilinear.vtk new file mode 100644 index 000000000..26139ce9b --- /dev/null +++ b/test/data/meshio_meshes/vtk/03_rectilinear.vtk @@ -0,0 +1,92 @@ +# vtk DataFile Version 4.2 +vtk output +ASCII +DATASET RECTILINEAR_GRID +DIMENSIONS 7 7 3 +X_COORDINATES 7 double +0 0.16666666667 0.33333333333 0.5 0.66666666667 0.83333333333 1 +METADATA +INFORMATION 0 + +Y_COORDINATES 7 double +0 0.16666666667 0.33333333333 0.5 0.66666666667 0.83333333333 1 +METADATA +INFORMATION 0 + +Z_COORDINATES 3 double +0 0.5 1 +METADATA +INFORMATION 0 + +CELL_DATA 72 +FIELD FieldData 2 +pressure1 1 72 double +0.68481602841 0.7408984814 0.17688921297 0.63393817883 0.044208263843 0.82976770229 0.89378590019 0.075092558663 0.43180151434 +0.035131859465 0.134643422 0.47990950523 0.80192557645 0.7468449724 0.20534806841 0.92834914766 0.88198675703 0.45615571918 +0.042484004691 0.87550368235 0.68700029846 0.22131595768 0.75649463584 0.44563818901 0.069957941663 0.46754458779 0.86074528691 +0.95202479824 0.2375718218 0.35798944994 0.19527332554 0.74519124313 0.95125108946 0.93581255986 0.94507096115 0.01704049028 +0.89259582525 0.8848127866 0.88185041179 0.63730034541 0.040485258291 0.86773991306 0.40879356878 0.63753083929 0.72482238033 +0.34846270951 0.32066055117 0.66800047263 0.35008675445 0.57675212419 0.44109084634 0.62252503984 0.74068575587 0.84557747344 +0.89870057861 0.63543896047 0.87469776486 0.97029262447 0.84717730236 0.41587290249 0.14356359296 0.99228835994 0.71032127168 +0.5956867493 0.92442066026 0.7386054156 0.60352799914 0.095139821159 0.3034024004 0.11421540773 0.67402382509 0.48084460187 + +METADATA +INFORMATION 0 + +pressure2 1 72 double +0.68481602841 0.7408984814 0.17688921297 0.63393817883 0.044208263843 0.82976770229 0.89378590019 0.075092558663 0.43180151434 +0.035131859465 0.134643422 0.47990950523 0.80192557645 0.7468449724 0.20534806841 0.92834914766 0.88198675703 0.45615571918 +0.042484004691 0.87550368235 0.68700029846 0.22131595768 0.75649463584 0.44563818901 0.069957941663 0.46754458779 0.86074528691 +0.95202479824 0.2375718218 0.35798944994 0.19527332554 0.74519124313 0.95125108946 0.93581255986 0.94507096115 0.01704049028 +0.89259582525 0.8848127866 0.88185041179 0.63730034541 0.040485258291 0.86773991306 0.40879356878 0.63753083929 0.72482238033 +0.34846270951 0.32066055117 0.66800047263 0.35008675445 0.57675212419 0.44109084634 0.62252503984 0.74068575587 0.84557747344 +0.89870057861 0.63543896047 0.87469776486 0.97029262447 0.84717730236 0.41587290249 0.14356359296 0.99228835994 0.71032127168 +0.5956867493 0.92442066026 0.7386054156 0.60352799914 0.095139821159 0.3034024004 0.11421540773 0.67402382509 0.48084460187 + +METADATA +INFORMATION 0 + +POINT_DATA 147 +FIELD FieldData 2 +temp1 1 147 double +0.15184421213 0.44742653081 0.095466301934 0.54763321187 0.19324596196 0.81336074461 0.89618473408 0.44987667885 0.80114149531 +0.16315685215 0.99812561567 0.9037730004 0.75268298488 0.53006709174 0.18576458996 0.51199463388 0.41105329773 0.24239596208 +0.85846691194 0.43413524711 0.47267822282 0.60641499485 0.51355839313 0.43287135185 0.47640559997 0.97288961494 0.61429042394 +0.70581048665 0.065936841167 0.63314967535 0.60012026764 0.18594694771 0.16823928819 0.080521273321 0.68190240412 0.75080745507 +0.5353777274 0.96784897933 0.12995469679 0.71846181243 0.66743195557 0.72575238303 0.088554580153 0.20320467526 0.87482370275 +0.65065914812 0.12594994752 0.02725564106 0.15049339894 0.68657697094 0.88013131699 0.94249582775 0.18122748926 0.46658147111 +0.44637444367 0.69280768437 0.92473788911 0.82529254604 0.15755822605 0.0051687595707 0.61460578104 0.7234585607 0.56905630427 +0.75900412905 0.47414886317 0.54394429824 0.34211996751 0.98196177072 0.92221924883 0.77527841623 0.63382558964 0.14924749942 +0.32768385259 0.2895643701 0.10320564521 0.15081282933 0.49996009749 0.32673651659 0.75383874553 0.8571015154 0.56124108275 +0.34393414122 0.9432200479 0.061201799696 0.9985863168 0.60908020181 0.73346253495 0.99490699616 0.15026452495 0.51409752559 +0.75630422794 0.92491239667 0.1099003329 0.57226406431 0.23060786115 0.29605317945 0.034194329357 0.59689719066 0.069093550567 +0.12779281759 0.39340161394 0.2860681582 0.25854783332 0.18894330876 0.85827171176 0.40775520287 0.76044080381 0.74732740091 +0.32219448353 0.39770096191 0.58102050637 0.05189883446 0.99509596567 0.9026782597 0.068170246003 0.16427309592 0.74588518831 +0.4044565828 0.58493877163 0.47228021091 0.65929383313 0.85792127496 0.33328956984 0.3600731556 0.27493365102 0.95807327535 +0.90241394706 0.93271836171 0.44865942466 0.46441902328 0.20433162022 0.56895928481 0.032408533118 0.53155053595 0.3759268701 +0.12034935601 0.12251117325 0.2785867957 0.73229626025 0.0004345801637 0.67193163546 0.81041906487 0.92307518563 0.047169703428 +0.57421165038 0.36437130081 0.20314746133 +METADATA +INFORMATION 0 + +temp2 1 147 double +0.15184421213 0.44742653081 0.095466301934 0.54763321187 0.19324596196 0.81336074461 0.89618473408 0.44987667885 0.80114149531 +0.16315685215 0.99812561567 0.9037730004 0.75268298488 0.53006709174 0.18576458996 0.51199463388 0.41105329773 0.24239596208 +0.85846691194 0.43413524711 0.47267822282 0.60641499485 0.51355839313 0.43287135185 0.47640559997 0.97288961494 0.61429042394 +0.70581048665 0.065936841167 0.63314967535 0.60012026764 0.18594694771 0.16823928819 0.080521273321 0.68190240412 0.75080745507 +0.5353777274 0.96784897933 0.12995469679 0.71846181243 0.66743195557 0.72575238303 0.088554580153 0.20320467526 0.87482370275 +0.65065914812 0.12594994752 0.02725564106 0.15049339894 0.68657697094 0.88013131699 0.94249582775 0.18122748926 0.46658147111 +0.44637444367 0.69280768437 0.92473788911 0.82529254604 0.15755822605 0.0051687595707 0.61460578104 0.7234585607 0.56905630427 +0.75900412905 0.47414886317 0.54394429824 0.34211996751 0.98196177072 0.92221924883 0.77527841623 0.63382558964 0.14924749942 +0.32768385259 0.2895643701 0.10320564521 0.15081282933 0.49996009749 0.32673651659 0.75383874553 0.8571015154 0.56124108275 +0.34393414122 0.9432200479 0.061201799696 0.9985863168 0.60908020181 0.73346253495 0.99490699616 0.15026452495 0.51409752559 +0.75630422794 0.92491239667 0.1099003329 0.57226406431 0.23060786115 0.29605317945 0.034194329357 0.59689719066 0.069093550567 +0.12779281759 0.39340161394 0.2860681582 0.25854783332 0.18894330876 0.85827171176 0.40775520287 0.76044080381 0.74732740091 +0.32219448353 0.39770096191 0.58102050637 0.05189883446 0.99509596567 0.9026782597 0.068170246003 0.16427309592 0.74588518831 +0.4044565828 0.58493877163 0.47228021091 0.65929383313 0.85792127496 0.33328956984 0.3600731556 0.27493365102 0.95807327535 +0.90241394706 0.93271836171 0.44865942466 0.46441902328 0.20433162022 0.56895928481 0.032408533118 0.53155053595 0.3759268701 +0.12034935601 0.12251117325 0.2785867957 0.73229626025 0.0004345801637 0.67193163546 0.81041906487 0.92307518563 0.047169703428 +0.57421165038 0.36437130081 0.20314746133 +METADATA +INFORMATION 0 + diff --git a/test/data/meshio_meshes/vtk/04_rectilinear.vtk b/test/data/meshio_meshes/vtk/04_rectilinear.vtk new file mode 100644 index 000000000..982ee8843 --- /dev/null +++ b/test/data/meshio_meshes/vtk/04_rectilinear.vtk @@ -0,0 +1,50 @@ +# vtk DataFile Version 4.2 +vtk output +ASCII +DATASET RECTILINEAR_GRID +DIMENSIONS 10 4 1 +X_COORDINATES 10 double +0 0.11111111111 0.22222222222 0.33333333333 0.44444444444 0.55555555556 0.66666666667 0.77777777778 0.88888888889 +1 +Y_COORDINATES 4 double +0 0.66666666667 1.3333333333 2 +Z_COORDINATES 1 double +0 +CELL_DATA 27 +FIELD FieldData 2 +pressure1 1 27 double +0.5967368454 0.95115399245 0.08747213813 0.28749644837 0.40514625881 0.16690134756 0.62865801418 0.030783662473 0.73469688514 +0.15982357526 0.94215501991 0.853981868 0.23819470223 0.95185671549 0.37963864995 0.060379164151 0.55299101432 0.40994903565 +0.44752862897 0.94077520508 0.098657258377 0.61637721618 0.61373522457 0.76903310377 0.73321879947 0.54788850996 0.4664110617 + +METADATA +INFORMATION 0 + +pressure2 1 27 double +0.5967368454 0.95115399245 0.08747213813 0.28749644837 0.40514625881 0.16690134756 0.62865801418 0.030783662473 0.73469688514 +0.15982357526 0.94215501991 0.853981868 0.23819470223 0.95185671549 0.37963864995 0.060379164151 0.55299101432 0.40994903565 +0.44752862897 0.94077520508 0.098657258377 0.61637721618 0.61373522457 0.76903310377 0.73321879947 0.54788850996 0.4664110617 + +METADATA +INFORMATION 0 + +POINT_DATA 40 +FIELD FieldData 2 +temp1 1 40 double +0.70315056489 0.77283040507 0.23882065545 0.47826852144 0.2100912521 0.53921783206 0.20433042163 0.73420831075 0.027654148794 +0.68639133094 0.4330220864 0.28495508317 0.33821187823 0.82527437165 0.54255032296 0.45393458559 0.83989136196 0.85876287932 +0.4214370932 0.19047900181 0.51820664038 0.77471790134 0.60592653466 0.81065380638 0.62617898509 0.38810685582 0.1126304294 +0.20460114912 0.54238177923 0.81393995793 0.96197048162 0.4422555548 0.2418563543 0.1052903392 0.48388728482 0.4595709923 +0.20135841829 0.89066770205 0.34317565499 0.65652281351 +METADATA +INFORMATION 0 + +temp2 1 40 double +0.70315056489 0.77283040507 0.23882065545 0.47826852144 0.2100912521 0.53921783206 0.20433042163 0.73420831075 0.027654148794 +0.68639133094 0.4330220864 0.28495508317 0.33821187823 0.82527437165 0.54255032296 0.45393458559 0.83989136196 0.85876287932 +0.4214370932 0.19047900181 0.51820664038 0.77471790134 0.60592653466 0.81065380638 0.62617898509 0.38810685582 0.1126304294 +0.20460114912 0.54238177923 0.81393995793 0.96197048162 0.4422555548 0.2418563543 0.1052903392 0.48388728482 0.4595709923 +0.20135841829 0.89066770205 0.34317565499 0.65652281351 +METADATA +INFORMATION 0 + diff --git a/test/data/meshio_meshes/vtk/05_rectilinear.vtk b/test/data/meshio_meshes/vtk/05_rectilinear.vtk new file mode 100644 index 000000000..c675ec688 --- /dev/null +++ b/test/data/meshio_meshes/vtk/05_rectilinear.vtk @@ -0,0 +1,50 @@ +# vtk DataFile Version 4.2 +vtk output +ASCII +DATASET RECTILINEAR_GRID +DIMENSIONS 10 1 4 +X_COORDINATES 10 double +0 0.11111111111 0.22222222222 0.33333333333 0.44444444444 0.55555555556 0.66666666667 0.77777777778 0.88888888889 +1 +Y_COORDINATES 1 double +0 +Z_COORDINATES 4 double +0 0.66666666667 1.3333333333 2 +CELL_DATA 27 +FIELD FieldData 2 +pressure1 1 27 double +0.23241625202 0.11445560209 0.76365154653 0.47087525569 0.72431649469 0.92392403459 0.77855368618 0.84124534651 0.23006099738 +0.072055527286 0.54402393208 0.76577680989 0.95543852626 0.5500200629 0.87894640567 0.1649442032 0.015127389286 0.91713330418 +0.88199809591 0.67635433792 0.022145891361 0.27235031166 0.2517931659 0.23538443475 0.83078337459 0.12698638054 0.32136110723 + +METADATA +INFORMATION 0 + +pressure2 1 27 double +0.23241625202 0.11445560209 0.76365154653 0.47087525569 0.72431649469 0.92392403459 0.77855368618 0.84124534651 0.23006099738 +0.072055527286 0.54402393208 0.76577680989 0.95543852626 0.5500200629 0.87894640567 0.1649442032 0.015127389286 0.91713330418 +0.88199809591 0.67635433792 0.022145891361 0.27235031166 0.2517931659 0.23538443475 0.83078337459 0.12698638054 0.32136110723 + +METADATA +INFORMATION 0 + +POINT_DATA 40 +FIELD FieldData 2 +temp1 1 40 double +0.63326220102 0.65880449811 0.092134010247 0.26224177577 0.18028495303 0.45655723881 0.75424083555 0.25092637201 0.42578021015 +0.34947513336 0.80900439304 0.10986986982 0.79435528494 0.040592168323 0.34699882279 0.64743497427 0.77190625479 0.87132637738 +0.85488395442 0.68169002004 0.479460097 0.44164793037 0.42271564266 0.60839199607 0.16007533174 0.11289515092 0.72833184529 +0.067663762988 0.86608996337 0.30484964892 0.96540154884 0.94371142461 0.14854998865 0.66201000286 0.29212325327 0.088839789059 +0.94721379534 0.16104719752 0.21336087397 0.98095779109 +METADATA +INFORMATION 0 + +temp2 1 40 double +0.63326220102 0.65880449811 0.092134010247 0.26224177577 0.18028495303 0.45655723881 0.75424083555 0.25092637201 0.42578021015 +0.34947513336 0.80900439304 0.10986986982 0.79435528494 0.040592168323 0.34699882279 0.64743497427 0.77190625479 0.87132637738 +0.85488395442 0.68169002004 0.479460097 0.44164793037 0.42271564266 0.60839199607 0.16007533174 0.11289515092 0.72833184529 +0.067663762988 0.86608996337 0.30484964892 0.96540154884 0.94371142461 0.14854998865 0.66201000286 0.29212325327 0.088839789059 +0.94721379534 0.16104719752 0.21336087397 0.98095779109 +METADATA +INFORMATION 0 + diff --git a/test/data/meshio_meshes/vtk/06_color_scalars.vtk b/test/data/meshio_meshes/vtk/06_color_scalars.vtk new file mode 100644 index 000000000..a39c36a5c --- /dev/null +++ b/test/data/meshio_meshes/vtk/06_color_scalars.vtk @@ -0,0 +1,23 @@ +# vtk DataFile Version 2.0 +data +ASCII +DATASET UNSTRUCTURED_GRID +POINTS 5 float + 1.5 0.0 0.0 + 0.0 1.5 0.0 + 1.5 1.5 0.0 + 0.0 0.0 0.0 +-1.5 -1.5 0.0 +CELLS 2 7 +2 3 4 +3 0 1 2 +CELL_TYPES 2 +3 +5 +POINT_DATA 5 +COLOR_SCALARS lut 4 +1.0 0.0 0.0 1.0 +0.0 1.0 0.0 1.0 +0.0 0.0 1.0 1.0 +0.0 0.0 0.0 1.0 +0.0 0.0 0.0 1.0 diff --git a/test/data/meshio_meshes/vtk/06_unstructured.vtk b/test/data/meshio_meshes/vtk/06_unstructured.vtk new file mode 100644 index 000000000..65e682aef --- /dev/null +++ b/test/data/meshio_meshes/vtk/06_unstructured.vtk @@ -0,0 +1,64 @@ +# vtk DataFile Version 5.1 +vtk output +ASCII +DATASET UNSTRUCTURED_GRID +POINTS 42 float +1.3 0.8 0.4 1.4 0.8 0.4 1.4 0.9 0.4 +1.3 0.9 0.4 1.3 0.8 0.5 1.4 0.8 0.5 +1.4 0.9 0.5 1.3 0.9 0.5 1.5 0.8 0.4 +1.5 0.9 0.4 1.5 0.8 0.5 1.5 0.9 0.5 +1.3 0.9 0 1.4 0.9 0 1.4 1 0 +1.3 1 0 1.3 0.9 0.1 1.4 0.9 0.1 +1.4 1 0.1 1.3 1 0.1 1.3 0.9 0.2 +1.4 0.9 0.2 1.4 1 0.2 1.3 1 0.2 +1.3 0.9 0.3 1.4 0.9 0.3 1.4 1 0.3 +1.3 1 0.3 1.4 1 0.4 1.3 1 0.4 +1.4 1 0.5 1.3 1 0.5 1.5 0.9 0 +1.5 1 0 1.5 0.9 0.1 1.5 1 0.1 +1.5 0.9 0.2 1.5 1 0.2 1.5 0.9 0.3 +1.5 1 0.3 1.5 1 0.4 1.5 1 0.5 + +CELLS 13 96 +OFFSETS vtktypeint64 +0 8 16 24 32 40 48 56 64 +72 80 88 96 +CONNECTIVITY vtktypeint64 +0 1 2 3 4 5 6 7 1 +8 9 2 5 10 11 6 12 13 +14 15 16 17 18 19 16 17 18 +19 20 21 22 23 20 21 22 23 +24 25 26 27 24 25 26 27 3 +2 28 29 3 2 28 29 7 6 +30 31 13 32 33 14 17 34 35 +18 17 34 35 18 21 36 37 22 +21 36 37 22 25 38 39 26 25 +38 39 26 2 9 40 28 2 9 +40 28 6 11 41 30 +CELL_TYPES 12 +12 +12 +12 +12 +12 +12 +12 +12 +12 +12 +12 +12 + +CELL_DATA 12 +SCALARS mat_id int +LOOKUP_TABLE default +2 2 1 1 1 1 2 1 1 +1 1 2 + +POINT_DATA 42 +SCALARS node_groups int +LOOKUP_TABLE default +0 0 0 0 0 0 0 0 0 +0 0 0 1 1 1 1 0 0 +0 0 0 0 0 0 0 0 0 +0 0 0 0 0 1 1 0 0 +0 0 0 0 0 0 diff --git a/test/data/meshio_meshes/vtk/gh-935.vtk b/test/data/meshio_meshes/vtk/gh-935.vtk new file mode 100644 index 000000000..f5606afa8 --- /dev/null +++ b/test/data/meshio_meshes/vtk/gh-935.vtk @@ -0,0 +1,22 @@ +# vtk DataFile Version 3.0 +vtk output +ASCII +DATASET UNSTRUCTURED_GRID +POINTS 6 float + 0 1 0.0 + 0 0 0.0 + 1 0 0.0 + 0 1 0.0 + 1 0 0.0 + 1 1 0.0 +CELLS 2 8 +3 0 1 2 +3 3 4 5 +CELL_TYPES 2 +5 +5 +CELL_DATA 2 +POINT_DATA 6 +SCALARS sol float 2 +LOOKUP_TABLE default +-1 1 -1 0 0 -0 0 0 0 0 0 0 diff --git a/test/data/meshio_meshes/vtk/rbc_001.vtk b/test/data/meshio_meshes/vtk/rbc_001.vtk new file mode 100644 index 000000000..72100ecb4 --- /dev/null +++ b/test/data/meshio_meshes/vtk/rbc_001.vtk @@ -0,0 +1,2500 @@ +# vtk DataFile Version 1.0 +rbc_001.vtk 3D Unstructured Grid of Triangles +ASCII + +DATASET UNSTRUCTURED_GRID +POINTS 500 float +-3.424999 -0.855454 2.257396 +-1.484919 0.665606 -3.151304 +1.636841 -0.848154 -0.458954 +3.732041 0.187906 -1.319734 +-1.756719 0.682006 0.807596 +0.911641 -0.828054 3.040696 +-0.218059 -0.489374 -3.806524 +-1.078099 0.891706 -2.420454 +-3.338019 0.263706 1.386896 +2.931841 1.447006 1.793796 +-1.796229 0.715706 1.214996 +2.421641 1.454706 0.904796 +-0.204659 0.658506 3.627796 +-2.160579 -0.044274 3.331996 +0.495541 -0.380754 -3.778464 +0.053641 1.122906 -2.441584 +-1.962639 -1.126464 3.026496 +0.009941 1.061706 2.921296 +0.252541 0.849906 0.570996 +-1.675219 -1.336964 2.454096 +0.409141 0.968806 -1.146214 +2.016341 1.414006 -2.211994 +-1.008069 -1.305914 1.804096 +-2.530049 0.495106 2.133796 +2.489541 0.835106 -3.168524 +-1.025719 -1.208374 -2.156554 +0.768841 -0.904814 -2.371244 +3.327941 -0.212814 1.173396 +-0.179759 0.895606 -1.223224 +2.897641 -0.330874 -1.827444 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a/test/data/meshio_meshes/wkt/simple.wkt b/test/data/meshio_meshes/wkt/simple.wkt new file mode 100644 index 000000000..a35c8a325 --- /dev/null +++ b/test/data/meshio_meshes/wkt/simple.wkt @@ -0,0 +1 @@ +TIN (((0 0 0, 0 0 1, 0 1 0, 0 0 0)), ((0 0 0, 0 1 0, 1 1 0, 0 0 0))) diff --git a/test/data/meshio_meshes/wkt/whitespaced.wkt b/test/data/meshio_meshes/wkt/whitespaced.wkt new file mode 100644 index 000000000..15c42bca5 --- /dev/null +++ b/test/data/meshio_meshes/wkt/whitespaced.wkt @@ -0,0 +1,4 @@ + TIN ( + ((0 + 0 0, 0 0.00 .1, 0. 0.1 0, 0 0 0)), ( +( 0 0 0 , 0 1 0, 1 1 0, 0 0 0))) diff --git a/test/tests.set b/test/tests.set index fb8380f90..9de76f4a3 100644 --- a/test/tests.set +++ b/test/tests.set @@ -131,6 +131,8 @@ SET(SESSION_FREE_TESTS doublenodes_polyhedra.py shaper_smesh_groups_without_session.py ssl_hdf5_symbols_conflicts.py + SMESH_MeshioShapes.py + SMESH_MeshioFiles.py ) # Additional files to install (not tests)