From 483dfdd01914ab0f3582fd0586c1e7c9d28bb3c6 Mon Sep 17 00:00:00 2001
From: crouzet <crouzet>
Date: Fri, 26 Oct 2012 14:36:19 +0000
Subject: [PATCH] changes for eris cluster

---
 src/SGE/Batch_BatchManager_eSGE.cxx | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/SGE/Batch_BatchManager_eSGE.cxx b/src/SGE/Batch_BatchManager_eSGE.cxx
index f6489a4..e576631 100644
--- a/src/SGE/Batch_BatchManager_eSGE.cxx
+++ b/src/SGE/Batch_BatchManager_eSGE.cxx
@@ -90,7 +90,7 @@ namespace Batch {
     string logFile = generateTemporaryFileName("SGE-submitlog");
 
     // define command to submit batch
-    string subCommand = string("bash -l -c \"cd ") + workDir + "; qsub " + fileNameToExecute + "_Batch.sh\"";
+    string subCommand = string("bash -l -c \\\"cd ") + workDir + "; qsub " + fileNameToExecute + "_Batch.sh\\\"";
     string command = _protocol.getExecCommand(subCommand, _hostname, _username);
     command += " > ";
     command += logFile;
@@ -138,7 +138,7 @@ namespace Batch {
     iss >> ref;
 
     // define command to delete batch
-    string subCommand = string("bash -l -c \"qdel ") + iss.str() + string("\"");
+    string subCommand = string("bash -l -c \\\"qdel ") + iss.str() + string("\\\"");
     string command = _protocol.getExecCommand(subCommand, _hostname, _username);
     cerr << command.c_str() << endl;
     status = system(command.c_str());
@@ -190,7 +190,7 @@ namespace Batch {
     string logFile = generateTemporaryFileName(string("SGE-querylog-id") + jobid.getReference());
 
     // define command to query batch
-    string subCommand = string("bash -l -c \"qstat | grep ") + iss.str() + string("\"");
+    string subCommand = string("bash -l -c \\\"qstat | grep ") + iss.str() + string("\\\"");
     string command = _protocol.getExecCommand(subCommand, _hostname, _username);
     command += " > ";
     command += logFile;
-- 
2.39.2