From 34d63729fe0f6f656ef6db9a5cab598146843b1e Mon Sep 17 00:00:00 2001
From: Nabil Ghodbane <nabil.ghodbane@cea.fr>
Date: Tue, 7 Mar 2023 16:02:08 +0100
Subject: [PATCH] spns #33861 support hdf5 1.12.0

---
 products/compil_scripts/med-4.1.1.sh         |  15 ++-
 products/compil_scripts/med.sh               |  46 +++----
 products/medfile.pyconf                      |  10 +-
 products/patches/med-4.1.0_hdf5-1.12.0.patch | 123 +++++++++++++++++++
 4 files changed, 159 insertions(+), 35 deletions(-)
 create mode 100644 products/patches/med-4.1.0_hdf5-1.12.0.patch

diff --git a/products/compil_scripts/med-4.1.1.sh b/products/compil_scripts/med-4.1.1.sh
index 0a0124b..e963b86 100755
--- a/products/compil_scripts/med-4.1.1.sh
+++ b/products/compil_scripts/med-4.1.1.sh
@@ -8,8 +8,13 @@ CONFIGURE_FLAGS=
 CONFIGURE_FLAGS+=' CFLAGS=-m64 CXXFLAGS=-m64' 
 CONFIGURE_FLAGS+=' --enable-python=yes'
 CONFIGURE_FLAGS+=' --enable-mesgerr'
-if [ -n "$SAT_HPC" ]
-then
+
+if [ "$HDF5_VERSION" == "1.12.1" ]; then
+    echo "WARNING: ensure compatibility with HDF 1.12"
+    CONFIGURE_FLAGS+=' CPPFLAGS=-DH5_USE_110_API'
+fi
+
+if [ -n "$SAT_HPC" ]; then
     export CXX=${MPI_CXX_COMPILER}
     export CC=${MPI_C_COMPILER}
     CONFIGURE_FLAGS+=' --with-swig=yes'
@@ -39,8 +44,7 @@ fi
 echo
 echo "*** make" $MAKE_OPTIONS
 make $MAKE_OPTIONS
-if [ $? -ne 0 ]
-then
+if [ $? -ne 0 ]; then
     echo "ERROR on make"
     exit 2
 fi
@@ -48,8 +52,7 @@ fi
 echo
 echo "*** make install"
 make install
-if [ $? -ne 0 ]
-then
+if [ $? -ne 0 ]; then
     echo "ERROR on make install"
     exit 3
 fi
diff --git a/products/compil_scripts/med.sh b/products/compil_scripts/med.sh
index 812b5a1..5716a07 100755
--- a/products/compil_scripts/med.sh
+++ b/products/compil_scripts/med.sh
@@ -5,36 +5,28 @@ echo "med" $VERSION
 echo "##########################################################################"
 
 
+CONFIGURE_FLAGS=
+CONFIGURE_FLAGS+=' CFLAGS=-m64 CXXFLAGS=-m64'
+CONFIGURE_FLAGS+=' --enable-python=no'
+echo $HDF5_VERSION
 
-CONFIGURE_FLAGS=$CONFIGURE_FLAGS'CFLAGS=-m64 CXXFLAGS=-m64' 
-# OP 06/02/2017
-# Putting option enable-python=no 
-# Reason : compilation failure of python interface modules on FD24 (generated by swig in medfile)
-# CEA decision 13/02/2017 : deactivation of the compilation of python interface modules because no need python interface
-CONFIGURE_FLAGS=$CONFIGURE_FLAGS' --enable-python=no'
+function version_ge() { test "$(echo "$@" | tr " " "\n" | sort -rV | head -n 1)" == "$1"; }
 
-if [ -n "$SAT_HPC" ]
-then
-    CONFIGURE_FLAGS=$CONFIGURE_FLAGS' --enable-parallel'
+if version_ge "$HDF5_VERSION" "1.12" ; then
+    echo "WARNING: ensure compatibility with HDF 1.12"
+    CONFIGURE_FLAGS+=' CPPFLAGS=-DH5_USE_110_API'
+fi
+
+if [ -n "$SAT_HPC" ]; then
+    CONFIGURE_FLAGS+=' --enable-parallel'
 else
-    # CNC 24/01/2017
-    # the line "export F77=gfortran" is commented, as we think it is not useful.
-    # at least it should'n.
-    # If it happens to be necessary, we will correct automake procedure.
-    #
-    # SRE 27/01/2017
-    # In fact this line is necessary because when the g77 compiler exists on the machine,
-    # it is found before gfortran and it makes the compilation fail.
-    # A mail has been sent to Eric Fayolle to fix this bug.
-    # En attendant, on remet la ligne.
     export F77=gfortran
 fi
 
 if [ "$SALOME_USE_64BIT_IDS" == "1" ]; then
     echo "WARNING: user requested 64 bits encoding for integers..."
-    export FFLAGS=-fdefault-integer-8
-    export FFLAGS=$FFLAGS' -g -O2 -ffixed-line-length-none'
-    CONFIGURE_FLAGS=$CONFIGURE_FLAGS' --with-med_int=long'
+    export FFLAGS='-fdefault-integer-8 -g -O2 -ffixed-line-length-none'
+    CONFIGURE_FLAGS+=' --with-med_int=long'
 else
     FFLAGS="-g -O2 -ffixed-line-length-none"
 fi
@@ -42,16 +34,15 @@ fi
 echo
 echo "*** configure --prefix=$PRODUCT_INSTALL FFLAGS=${FFLAGS} $CONFIGURE_FLAGS"
 $SOURCE_DIR/configure --prefix=$PRODUCT_INSTALL FFLAGS="${FFLAGS}" $CONFIGURE_FLAGS
-if [ $? -ne 0 ]
-then
+if [ $? -ne 0 ]; then
     echo "ERROR on configure"
     exit 1
 fi
+
 echo
 echo "*** make" $MAKE_OPTIONS
 make $MAKE_OPTIONS
-if [ $? -ne 0 ]
-then
+if [ $? -ne 0 ]; then
     echo "ERROR on make"
     exit 2
 fi
@@ -59,8 +50,7 @@ fi
 echo
 echo "*** make install"
 make install
-if [ $? -ne 0 ]
-then
+if [ $? -ne 0 ]; then
     echo "ERROR on make install"
     exit 3
 fi
diff --git a/products/medfile.pyconf b/products/medfile.pyconf
index b45a5bb..dd2a63a 100644
--- a/products/medfile.pyconf
+++ b/products/medfile.pyconf
@@ -79,17 +79,25 @@ version_4_1_1_FD36 :
 # needed in order to screen with windows version - see below
 version_4_1_0 :
 {
+  compil_script :  "med-4.1.0.sh"
   patches : []
 }
 
 # needed in order to screen with windows version - see below
 version_4_1_0_hdf5 :
 {
-  compil_script :  "med.sh"
+  compil_script :  "med-4.1.0.sh"
   test_build : "make check"
   patches : ['medfile-4.1.0-hdf5.patch']
 }
 
+version_4_1_0_hdf5_1_12 :
+{
+  compil_script :  "med-4.1.0.sh"
+  test_build : "make check"
+  patches : ['med-4.1.0_hdf5-1.12.0.patch']
+}
+
 version_4_1_0_win : 
 {
   patches : ['med-4.1.0_win_3x_files_support.patch', 'med-4.1.0_hdf5_native_long.patch']
diff --git a/products/patches/med-4.1.0_hdf5-1.12.0.patch b/products/patches/med-4.1.0_hdf5-1.12.0.patch
new file mode 100644
index 0000000..75ff287
--- /dev/null
+++ b/products/patches/med-4.1.0_hdf5-1.12.0.patch
@@ -0,0 +1,123 @@
+--- med-4.1.0_ref/configure	2020-03-11 12:53:46.000000000 +0100
++++ med-4.1.0_dev/configure	2023-03-01 14:45:28.321320038 +0100
+@@ -3197,7 +3197,7 @@
+ #med_check_hdf5.m4
+ HDF_VERSION_REF=5-1.10.2
+ HDF_VERSION_MAJOR_REF=1
+-HDF_VERSION_MINOR_REF=10
++HDF_VERSION_MINOR_REF=13
+ HDF_VERSION_RELEASE_REF=2
+ 
+ 
+@@ -7573,16 +7573,16 @@
+       HDF5_VERSION="0"
+       if test -n "$HDF5_ABS_PATH" ; then
+          HDF5_USED_VER=` grep H5_VERS_INFO $HDF5_ABS_PATH | sed  's/\([^"]*\)\(".*"\)\([^"]*\)/\2/g' `
+-         H5_VER_MAJOR=`  grep '#define *H5_VERS_MAJOR' $HDF5_ABS_PATH | sed  's/^.*H5_VERS_MAJOR[[ \t]]*\([0-9]*\)[[ \t]]*.*$/\1/g' `
+-         H5_VER_MINOR=`  grep '#define *H5_VERS_MINOR' $HDF5_ABS_PATH | sed  's/^.*H5_VERS_MINOR[[ \t]]*\([0-9]*\)[[ \t]]*.*$/\1/g' `
+-         H5_VER_RELEASE=`grep '#define *H5_VERS_RELEASE' $HDF5_ABS_PATH | sed  's/^.*H5_VERS_RELEASE[[ \t]]*\([0-9]*\)[[ \t]]*.*$/\1/g' `
++         H5_VER_MAJOR=`  grep '#define *H5_VERS_MAJOR' $HDF5_ABS_PATH | cut -d ' ' -f3 `
++         H5_VER_MINOR=`  grep '#define *H5_VERS_MINOR' $HDF5_ABS_PATH | cut -d ' ' -f3 `
++         H5_VER_RELEASE=`grep '#define *H5_VERS_RELEASE' $HDF5_ABS_PATH | cut -d ' ' -f3 `
+          HDF5_VERSION=`  expr 10000 \* ${H5_VER_MAJOR} + 100 \* ${H5_VER_MINOR} + ${H5_VER_RELEASE} `
+-         test "0${HDF5_VERSION}" -gt "11100" || test "0${HDF5_VERSION}" -lt "11002" && as_fn_error $? "
+-This HDF5 version ${H5_VER_MAJOR}.${H5_VER_MINOR}.${H5_VER_RELEASE} must not be used with med-fichier${MED_NUM_MAJEUR}.${MED_NUM_MINEUR}.${MED_NUM_RELEASE}.
+-The HDF5 library version used by med-fichier${MED_NUM_MAJEUR}.y.z MUST NOT be > 1.10 and have to be at least HDF${HDF_VERSION_REF}.
+-DO NOT TRY TO COMPILE med-fichier${MED_NUM_MAJEUR}.${MED_NUM_MINEUR}.${MED_NUM_RELEASE} version with an HDF5 library which would generate an hdf5 file not compliant with HDF5-${HDF_VERSION_MAJOR_REF}.${HDF_VERSION_MINOR_REF}.z library.
+-This would BREAK med-fichier compatibility between files with the same revision number !
+-      " "$LINENO" 5
++#          test "0${HDF5_VERSION}" -gt "11100" || test "0${HDF5_VERSION}" -lt "11002" && as_fn_error $? "
++# This HDF5 version ${H5_VER_MAJOR}.${H5_VER_MINOR}.${H5_VER_RELEASE} must not be used with med-fichier${MED_NUM_MAJEUR}.${MED_NUM_MINEUR}.${MED_NUM_RELEASE}.
++# The HDF5 library version used by med-fichier${MED_NUM_MAJEUR}.y.z MUST NOT be > 1.10 and have to be at least HDF${HDF_VERSION_REF}.
++# DO NOT TRY TO COMPILE med-fichier${MED_NUM_MAJEUR}.${MED_NUM_MINEUR}.${MED_NUM_RELEASE} version with an HDF5 library which would generate an hdf5 file not compliant with HDF5-${HDF_VERSION_MAJOR_REF}.${HDF_VERSION_MINOR_REF}.z library.
++# This would BREAK med-fichier compatibility between files with the same revision number !
++#       " "$LINENO" 5
+      else
+ ## In case user explicitly ask to not use hdf5 !
+       { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: Can't compile MED without hdf5" >&5
+@@ -31697,7 +31697,8 @@
+      case $am_cv_python_pythondir in
+      $am_py_prefix*)
+        am__strip_prefix=`echo "$am_py_prefix" | sed 's|.|.|g'`
+-       am_cv_python_pythondir=`echo "$am_cv_python_pythondir" | sed "s,^$am__strip_prefix,$PYTHON_PREFIX,"`
++       # am_cv_python_pythondir=`echo "$am_cv_python_pythondir" | sed "s,^$am__strip_prefix,$PYTHON_PREFIX,"`
++       am_cv_python_pythondir="\${PYTHON_PREFIX}/lib/python$PYTHON_VERSION/site-packages"
+        ;;
+      *)
+        case $am_py_prefix in
+@@ -31741,7 +31742,8 @@
+      case $am_cv_python_pyexecdir in
+      $am_py_exec_prefix*)
+        am__strip_prefix=`echo "$am_py_exec_prefix" | sed 's|.|.|g'`
+-       am_cv_python_pyexecdir=`echo "$am_cv_python_pyexecdir" | sed "s,^$am__strip_prefix,$PYTHON_EXEC_PREFIX,"`
++       # am_cv_python_pyexecdir=`echo "$am_cv_python_pyexecdir" | sed "s,^$am__strip_prefix,$PYTHON_EXEC_PREFIX,"`
++       am_cv_python_pyexecdir="\${PYTHON_EXEC_PREFIX}/lib/python$PYTHON_VERSION/site-packages"
+        ;;
+      *)
+        case $am_py_exec_prefix in
+--- med-4.1.0_ref/src/hdfi/_MEDparFileCreate.c	2020-03-11 10:36:37.000000000 +0100
++++ med-4.1.0_dev/src/hdfi/_MEDparFileCreate.c	2023-03-01 14:38:44.653666031 +0100
+@@ -64,7 +64,7 @@
+    * En HDF5-1.10.0p1 cela n'a aucun effet ! 
+    * Un test autoconf permet de fixer un intervalle de version HDF à MED.
+    */
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+    
+--- med-4.1.0_ref/src/hdfi/_MEDmemFileOpen.c	2020-03-11 11:06:04.000000000 +0100
++++ med-4.1.0_dev/src/hdfi/_MEDmemFileOpen.c	2023-03-01 14:39:16.990279182 +0100
+@@ -434,7 +434,7 @@
+     goto ERROR;
+   }
+ 
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+   if ( H5Pset_libver_bounds( _fapl, H5F_LIBVER_18, H5F_LIBVER_18) ) {
+--- med-4.1.0_ref/src/hdfi/_MEDfileCreate.c	2020-03-11 10:36:37.000000000 +0100
++++ med-4.1.0_dev/src/hdfi/_MEDfileCreate.c	2023-03-01 14:42:38.690103638 +0100
+@@ -159,7 +159,7 @@
+    * En HDF5-1.10.0p1 cela n'a aucun effet ! 
+    * Un test autoconf permet de fixer un intervalle de version HDF à MED.
+    */
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+    
+--- med-4.1.0_ref/src/hdfi/_MEDparFileOpen.c	2020-03-11 10:36:36.000000000 +0100
++++ med-4.1.0_dev/src/hdfi/_MEDparFileOpen.c	2023-03-01 14:43:12.134737789 +0100
+@@ -55,7 +55,7 @@
+     MED_ERR_(_fid,MED_ERR_INIT,MED_ERR_PROPERTY,MED_ERR_PARALLEL_MSG);
+     goto ERROR;
+   }
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+   if ( H5Pset_libver_bounds( _fapl, H5F_LIBVER_18, H5F_LIBVER_18 ) ) {
+--- med-4.1.0_ref/src/hdfi/_MEDfileOpen.c	2020-03-12 16:27:49.000000000 +0100
++++ med-4.1.0_dev/src/hdfi/_MEDfileOpen.c	2023-03-01 14:43:45.131363443 +0100
+@@ -72,7 +72,7 @@
+ 
+    •   The creation order tracking property, H5P_CRT_ORDER_TRACKED, has been set in the group creation property list (see H5Pset_link_creation_order). 
+   */
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+ /* L'avantage de bloquer le modèle interne HDF5 
+--- med-4.1.0_ref/src/ci/MEDfileCompatibility.c	2020-03-11 10:36:34.000000000 +0100
++++ med-4.1.0_dev/src/ci/MEDfileCompatibility.c	2023-03-01 14:38:09.220994176 +0100
+@@ -113,7 +113,7 @@
+ #if MED_NUM_MAJEUR != 4
+ #error "Don't forget to update the test version here when you change the major version of the library !"
+ #endif
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to check the compatibility version of the library, depending on the internal hdf model choice !"
+ #error "Cf. _MEDfileCreate ..."
+ #endif
-- 
2.39.2