From 3443420a18b6f6fee4fe826191acd7512772e477 Mon Sep 17 00:00:00 2001 From: jfa Date: Tue, 27 Jan 2009 10:23:43 +0000 Subject: [PATCH] Bug 0020072: GHS3DPRLPLUGIN update. 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a/doc/salome/gui/SMESH/input/about_hypo.doc +++ b/doc/salome/gui/SMESH/input/about_hypo.doc @@ -42,6 +42,7 @@ meshers and thus, work only with definite algorithms.
  • \subpage netgen_2d_3d_hypo_page
    • - work with NetGen algorithm.
  • \subpage ghs3d_hypo_page
    • - works with GHS3D algorithm. +
  • \subpage ghs3dprl_hypo_page
    • - works with GHS3DPRL (tepal) algorithm.
  • \subpage blsurf_hypo_page
    • - works with BLSURF algorithm.
@@ -61,4 +62,4 @@ The choice of a hypothesis depends on: -*/ \ No newline at end of file +*/ diff --git a/doc/salome/gui/SMESH/input/ghs3dprl_hypo.doc b/doc/salome/gui/SMESH/input/ghs3dprl_hypo.doc new file mode 100644 index 000000000..40ffb918c --- /dev/null +++ b/doc/salome/gui/SMESH/input/ghs3dprl_hypo.doc @@ -0,0 +1,392 @@ +/*! + +\page ghs3dprl_hypo_page GHS3DPRL Parameters hypothesis + +\n GHS3DPRL Parameters hypothesis works only with Tetrahedron (Tepal with TetMesh-GHS3D) algorithm. +\n +\n This algorithm is a commercial software, its use requires a licence (http://www.distene.com/fr/build/offer.html). +\n The advantage of Tepal is the possibility to generate (for example) a partitioned +200 million tetrahedra mesh on a not-so-big memory computer (2Go RAM) +...in something like 50 hours of one CPU (Xeon, 2008). +This is an alternative to Pluging GHS3D where you should need something like a not-so-common CPU with 64Go RAM +to try to do a one-partitionned 200 million tetrahedra mesh ...in a much less time indeed. +\n +\n Notes: +\n This Plugin doesn't load in Memory the supposed plentiful big resulting meshes. +It's user choice: (in GUI Mesh mode) menu File-Import-MED Files. +\n Beware, to load one 5 millions tetrahedra MED file, GUI Salome needs 2Go RAM. +\n A new true parallel faster version of Tepal, using MPI, is expected in 2009. + +\image html ghs3dprl_parameters_basic.png + +
    +
  • +Name - allows to define the name of the hypothesis (GHS3DPRL Parameters by default). +
    • +
  • +MED_Name - allows to define the path and the basename of the +generated resulted MED files ("DOMAIN" by default). +Undefined path means environment variable $SALOME_TMP_DIR (or $TMP by default). +
    • +
  • +Nb_Part - allows to define the number of MED files generated, +the initial skin (triangles) will be meshed (tetrahedra) and partitioned +in Nb_Part by the elementary algorithm implemented in Tepal.
    +Beware, the (expected) number of total tetrahedra versus this parameter +involves the maximum tepal RAM use. +
    • +
  • +Keep_Files - if this box is checked, input files of Tepal +(GHS3DPRL.points and GHS3DPRL.faces) are deleted after use (...if no backgrounding). +
    • +
  • +Tepal_in_Background - if this box is checked, for big meshes, +launch Tepal execution and MED file generation in background, +allows user exiting of Salome. In this case, beware of the +job Tepal is "killSalome.py" independent, sometimes on other host. +
    • +
  • +To_Mesh_Holes - if this box is checked, force parameter component +of tetmesh-ghs3d to mesh holes. +
    • + +

    Modifying GHS3DPRL Advanced Parameters


    +GHS3DPRL Plugin launches standalone binary executable tepal2med which launches binary executable tepal.
    +tepal2med launches tepal, wait for the end of computation, and converts resulting output tepal files in expected MED files.
    +Some advanced optional parameters are accessibles as arguments.
    +If keep_files checked you a posteriori can always re-launch tepal2med in a Terminal as a command with yours parameters.
    Idem for tepal.

    +
  • +Advanced tepal2med Parameters - type "tepal2med --help" in a Terminal.

    + +\verbatim +myname@myhost > /export/home/myname/salome_5/GHS3DPRLPLUGIN_5/bin/salome/tepal2med --help +Available options: + --help : produces this help message + --casename : path and name of input tepal2med files which are + - output files of tepal .msg .noboite .faces .points .glo + - output file of GHS3DPRL_Plugin casename_skin.med (optional) + with initial skin and its initial groups + --number : number of partitions + --medname : path and name of output MED files + --limitswap : max size of working cpu memory (Mo) (before swapping on .temp files) + --verbose : trace of execution (0->6) + --test : more tests about joints, before generation of output files + --menu : a GUI menu for option number + --launchtepal : also launch tepal on files casename.faces and casename.points and option number + --meshholes : force parameter component of tetmesh-ghs3d to mesh holes + --background : force background mode from launch tepal and generation of final MED files (big meshes) + --deletegroups : regular expression (see QRegExp) which matches unwanted groups in final MED files + (try --deletegroups="(\bAll_Nodes|\bAll_Faces)" + (try --deletegroups="((\bAll_|\bNew_)(N|F|T))" +example: + tepal2med --casename=/tmp/GHS3DPRL --number=2 --medname=DOMAIN --limitswap=1000 + --verbose=0 --test=yes --menu=no --launchtepal=no + +\endverbatim + +

    • +
  • +

    +Advanced tepal Parameters - type "tepal" in a Terminal.

    + +\verbatim +myname@myhost > tepal + ===================================== + GHS3D-TEPAL 1.4.2 (Dec, 2006) 10-Dec-2008 AT 12:59:48 + ===================================== + + Distene SAS + Pole Teratec - BARD-1 + Domaine du Grand Rue + 91680 Bruyeres le Chatel + FRANCE + Phone: +33(0)1-69-26-62-10 Fax: +33(0)1-69-26-90-33 + EMail: support@distene.com + + COPYRIGHT (C)2006 DISTENE ALL RIGHTS RESERVED + + +USAGE : tepal options + +With options in : + --filename name (-f name) : + Basename of the input case (MANDATORY) + + --ndom n (-n n) : + Number of subdomains to make (MANDATORY) + + --ghs3d ghs3d options (-g ghs3d options) : + Run temesh ghs3d on a previously generated subdomain. (ghs3d options must be "quoted") + + --memory m (-m m) : + Max amount of memory (megabytes) allowed for ghs in the cutting process. (default is 0 : unlimited) + + --mesh_only (-Z ) : + Only (re)mesh all subdomains and update communications messages + + --mesh_call command (-c command) : + Call the user specified command for meshing all the subomains after their skin was generated + + --stats_only (-S ) : + Only compute and show some statistics on subdomains + + --rebuild (-r ) : + Merge final subdomains skins + + --rebuild_tetra (-R ) : + Merge final subdomains skins and tetraedra + + --rebuild_iface (-i ) : + Include interfaces in final subdomains merge + + --rebuild_retag (-t ) : + Tag vertices, faces (and tetra if selected) with their subdomain number in final subdomains merge (keeps the lowest tag for shared elements) + + --rebuild_ensight_parts (-e ) : + Build ensight geom file with parts + + --tetmesh_args str (-G str) : + Arguments to pass to Tetmesh during cutting process + + ============================================================================== + GHS3D-TEPAL SOFTWARE 1.4.2 (Dec, 2006) + END OF SESSION + COPYRIGHT (C)2006 DISTENE ALL RIGHTS RESERVED + ============================================================================== + ( Distene SAS + Phone: +33(0)1-69-26-62-10 Fax: +33(0)1-69-26-90-33 + EMail: support@distene.com ) + +\endverbatim + +

    • +
  • +

    +Advanced ghs3d Parameters (through tepal's --tetmesh_args) - type "ghs3d -h" in a Terminal.

    + +\verbatim +myname@myhost > ghs3d -h + +USE + /export/home/myname/ghs3d-4.0/DISTENE/Tools/TetMesh-GHS3D4.0/bin/Linux/ghs3dV4.0 + [-u] [-m memory>] [-M MEMORY] [-f prefix] [-v verbose] + [-c component] [-p0] [-C] [-E count] [-t] [-o level] + [-I filetype] [-a/-b] [-O n m] + +DESCRIPTION + + -u (-h) : prints this message. + + -m memory : launches the software with memory Megabytes of work space. + The default value of this parameter is 64 Megabytes and its + minimum value is 10 Megabytes. + It is also possible to set this parameter with the + environment variable GHS3D_MEMORY by means of an operation + equivalent to: + setenv GHS3D_MEMORY memory, + the value specified in the command line has the priority on + the environment variable. + + -M MEMORY : uses the automatic memory adjustment feature. + If MEMORY is zero, the size of the work space is initially + guessed from the input. If MEMORY is not zero, the + software starts with MEMORY Megabytes of work space. + The software then reallocates more and more memory as + needed. + The starting value when MEMORY equals 0 is 64 Megabytes, + the maximum is given with memory of the -m option if used + and the actual memory available. + + -f prefix : defines the generic prefix of the files. + + -v verbose : sets the output level parameter (the verbose parameter + must be in the range 0 to 10). + + -c component : chooses the meshed component. If component is + 0, all components to be meshed + 1, only the main (outermost) component to be meshed + + -p0 : disables creation of internal points. + + -C : uses alternate boundary recovery version. To be used only + when the boundary recovery of the standard version fails. + + -E count : sets the extended output for error messages. If -E is used, + the error messages found will be printed, up to a maximum + count of errors between 1 and 100. + + -t : generates an error file prefix.Log + + -o level : sets the desired optimisation level. + Valid optimisation levels are: + none, light, medium or standard, strong, + in increasing order of "quality vs speed" ratio. + + -I filetype : defines the input mesh format as follows: + -IP input files are ascii files, named prefix.points + and prefix.faces - this is the default + -IPb input files are binary files, named prefix.pointsb + and prefix.facesb + -IM input file is ascii file, named prefix.mesh + where prefix is given with the -f option + + -a/-b : selects the output file type: + -a for ascii (the default) and + -b for binary. + + -On : saves a NOPO file in addition. NOPO is the mesh data + structure of the Simail and Modulef software packages. + -Om : saves a mesh file in addition. + -Omn : saves both NOPO and mesh files. + + ============================================================================== + TETMESH-GHS3D SOFTWARE 4.0-3 (December, 2006) + END OF SESSION + COPYRIGHT (C)1989-2006 INRIA ALL RIGHTS RESERVED + ============================================================================== + ( Distene SAS + Phone: +33(0)1-69-26-62-10 Fax: +33(0)1-69-26-90-33 + EMail: support@distene.com ) + +\endverbatim + +

    • +

    Saving user's preferred GHS3DPRL Advanced Parameters


    +GHS3DPRL Plugin launches standalone binary executable tepal2med.
    +you may rename tepal2med as tepal2med.exe for example, and replace tepal2med by a shell script at your convenience to overriding parameters.
    ... or else $PATH modification... .
    Idem for tepal.

    +
  • +Advanced tepal2med Parameters - overriding parameter deletegroups

    + +\code +#!/bin/bash +#script tepal2med overriding parameter deletegroups +#we have renamed binary executable tepal2med as tepal2med.exe +#echo tepal2med initial parameters are $1 $2 $3 $4 ... or $* +#$0 is ignored + +tepal2med.exe $* --deletegroups="(\bAll_Nodes|\bAll_Faces)" + +\endcode + +

    • +
  • +

    +Advanced tepal Parameters - overriding parameter component of ghs3d (to mesh holes).

    + +\code +#!/bin/bash +#script tepal overriding parameter component of tetmesh-ghs3d +#we have renamed binary executable tepal as tepal.exe + +#optionnaly we could set licence only for us +DISTENE_LICENSE_FILE="Use global envvar: DLIM8VAR" +DLIM8VAR="dlim8 1:1:29030@is142356/0016175ef08c::a1ba1...etc...e19" +SIMULOGD_LICENSE_FILE=29029@is142356 + +tepal.exe $* --tetmesh_args "-c 0" + +\endcode + +

    • +
  • +

    +Advanced tepal Parameters - overriding launching tepal on other host.

    + +\code +#!/bin/bash +#script tepal overriding launching tepal on other host (tepal run 64 bits only) +#we have renamed binary executable tepal as tepal.exe +#common file system (same path) otherwise scp... on input or result files +#ssh -keygen -t rsa done and files id_rsa et id-rsa.pub move in ~/.ssh + +#example of typical command +#tepal -f /home/myname/tmp/GHS3DPRL -n 4 > /home/myname/tmp/tepal.log +#echo parameters $1 $2 $3 $4 ... or $* + +#tepal licence ought to be known on otherhost +ssh otherhost "tepal.exe $* > /home/myname/tmp/tepal.log" + +#or more and more +#ssh otherhost "tepal.exe $* --tetmesh_args \"-c 0\"" > /home/myname/tmp/tepal.log + +\endcode + +

    • + +

    TUI use.


    + +
  • +

    +example ex30_tepal.py.

    + +\code + +#!/bin/python +import os + +import geompy +import smesh + +# Parameters +# ---------- + +results = "/tmp/ZZ" + +radius = 50 +height = 200 + +# Build a cylinder +# ---------------- + +base = geompy.MakeVertex(0, 0, 0) +direction = geompy.MakeVectorDXDYDZ(0, 0, 1) + +cylinder = geompy.MakeCylinder(base, direction, radius, height) + +geompy.addToStudy(cylinder, "Cylinder") + +# Define a mesh on a geometry +# --------------------------- + +m = smesh.Mesh(cylinder) + +# 2D mesh with BLSURF +# ------------------- + +algo2d = m.Triangle(smesh.BLSURF) + +algo2d.SetPhysicalMesh(1) +algo2d.SetPhySize(5) + +algo2d.SetGeometricMesh(0) + +# 3D mesh with tepal +# ------------------ + +algo3d = m.Tetrahedron(smesh.GHS3DPRL) + +algo3d.SetMEDName(results) +algo3d.SetNbPart(4) +algo3d.SetBackground(False) +algo3d.SetKeepFiles(False) +algo3d.SetToMeshHoles(True) + +# Launch meshers +# -------------- + +status = m.Compute() + +# Test if ok +# ---------- + +if os.access(results+".xml", os.F_OK): + print "Ok: tepal" +else: + print "KO: tepal" +\endcode + +

    • +
+ + +*/ diff --git a/src/SMESH_SWIG/ex30_tepal.py b/src/SMESH_SWIG/ex30_tepal.py index 2b8c38797..c73dc872d 100644 --- a/src/SMESH_SWIG/ex30_tepal.py +++ b/src/SMESH_SWIG/ex30_tepal.py @@ -9,7 +9,7 @@ import smesh # Parameters # ---------- -results = "/export/home/wambeke/ZZ" +results = "/tmp/ZZ" radius = 50 height = 200 @@ -48,6 +48,7 @@ algo3d.SetMEDName(results) algo3d.SetNbPart(4) algo3d.SetBackground(False) algo3d.SetKeepFiles(False) +algo3d.SetToMeshHoles(True) # Launch meshers # -------------- -- 2.39.2