From 2db49df0597cf6e24371d25c682e6942c567bd3b Mon Sep 17 00:00:00 2001 From: Guytri KASTANE Date: Mon, 22 Apr 2024 15:39:36 +0200 Subject: [PATCH] spns #29973: add patch for mpi4py on Red Hat distribs --- products/C3PO.pyconf | 1 + products/patches/C3PO-v2.3.patch | 403 +++++++++++++++++++++++++++++++ 2 files changed, 404 insertions(+) create mode 100644 products/patches/C3PO-v2.3.patch diff --git a/products/C3PO.pyconf b/products/C3PO.pyconf index e6487b4..7c6d946 100644 --- a/products/C3PO.pyconf +++ b/products/C3PO.pyconf @@ -33,6 +33,7 @@ default : version_v2_3 : { compil_script : "C3PO-v2.3.sh" + patches: ['C3PO-v2.3.patch'] } version_v2_0 : { diff --git a/products/patches/C3PO-v2.3.patch b/products/patches/C3PO-v2.3.patch new file mode 100644 index 0000000..2061838 --- /dev/null +++ b/products/patches/C3PO-v2.3.patch @@ -0,0 +1,403 @@ +diff -Naur C3PO/sources/c3po/mpi/MPICollaborativeDataManager.py C3PO_dev/sources/c3po/mpi/MPICollaborativeDataManager.py +--- C3PO/sources/c3po/mpi/MPICollaborativeDataManager.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPICollaborativeDataManager.py 2024-04-22 15:21:40.288851916 +0200 +@@ -11,7 +11,10 @@ + """ Contain the class MPICollaborativeDataManager. """ + from __future__ import print_function, division + import math +-from mpi4py import MPI ++try: ++ from mpi4py import MPI ++except: ++ from openmpi.mpi4py import MPI + + from c3po.CollaborativeDataManager import CollaborativeDataManager + from c3po.CollaborativeObject import CollaborativeObject +diff -Naur C3PO/sources/c3po/mpi/MPICoupler.py C3PO_dev/sources/c3po/mpi/MPICoupler.py +--- C3PO/sources/c3po/mpi/MPICoupler.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPICoupler.py 2024-04-22 15:22:50.834694268 +0200 +@@ -10,7 +10,10 @@ + + """ Contain the class MPICoupler. """ + from __future__ import print_function, division +-from mpi4py import MPI ++try: ++ from mpi4py import MPI ++except: ++ from openmpi.mpi4py import MPI + + from c3po.Coupler import Coupler + from c3po.mpi.MPIRemote import MPIRemote +diff -Naur C3PO/sources/c3po/mpi/MPIDomainDecompositionDataManager.py C3PO_dev/sources/c3po/mpi/MPIDomainDecompositionDataManager.py +--- C3PO/sources/c3po/mpi/MPIDomainDecompositionDataManager.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPIDomainDecompositionDataManager.py 2024-04-22 15:20:26.465016893 +0200 +@@ -11,7 +11,10 @@ + """ Contain the class MPIDomainDecompositionDataManager. """ + from __future__ import print_function, division + import math +-from mpi4py import MPI ++try: ++ from mpi4py import MPI ++except: ++ from openmpi.mpi4py import MPI + + from c3po.LocalDataManager import LocalDataManager + +diff -Naur C3PO/sources/c3po/mpi/mpiExchangeMethods/MPISharedRemapping.py C3PO_dev/sources/c3po/mpi/mpiExchangeMethods/MPISharedRemapping.py +--- C3PO/sources/c3po/mpi/mpiExchangeMethods/MPISharedRemapping.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/mpiExchangeMethods/MPISharedRemapping.py 2024-04-22 15:18:57.056216701 +0200 +@@ -10,7 +10,10 @@ + + """ Contain the class SharedRemapping. """ + from __future__ import print_function, division +-from mpi4py import MPI as mpi ++try: ++ from mpi4py import MPI as mpi ++except: ++ from openmpi.mpi4py import MPI as mpi + + import c3po.medcouplingCompat as mc + from c3po.mpi.mpiExchangeMethods.MPIExchangeMethod import MPIExchangeMethod +diff -Naur C3PO/sources/c3po/mpi/mpiExchangeMethods/MPIValueBcast.py C3PO_dev/sources/c3po/mpi/mpiExchangeMethods/MPIValueBcast.py +--- C3PO/sources/c3po/mpi/mpiExchangeMethods/MPIValueBcast.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/mpiExchangeMethods/MPIValueBcast.py 2024-04-22 15:19:43.425113077 +0200 +@@ -10,7 +10,10 @@ + + """ Contain the class SharedRemapping. """ + from __future__ import print_function, division +-from mpi4py import MPI as mpi ++try: ++ from mpi4py import MPI as mpi ++except: ++ from openmpi.mpi4py import MPI as mpi + + from c3po.mpi.mpiExchangeMethods.MPIExchangeMethod import MPIExchangeMethod + +diff -Naur C3PO/sources/c3po/mpi/MPIExchanger.py C3PO_dev/sources/c3po/mpi/MPIExchanger.py +--- C3PO/sources/c3po/mpi/MPIExchanger.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPIExchanger.py 2024-04-22 15:22:23.057756341 +0200 +@@ -10,7 +10,10 @@ + + """ Contain the classes MPIExchanger and MPIShortcutToData. MPIShortcutToData is for internal use only. """ + from __future__ import print_function, division +-from mpi4py import MPI as mpi ++try: ++ from mpi4py import MPI as mpi ++except: ++ from openmpi.mpi4py import MPI as mpi + + from c3po.LocalExchanger import LocalExchanger, ShortcutToField, ShortcutToValue + from c3po.CollaborativeExchanger import CollaborativeExchanger +diff -Naur C3PO/sources/c3po/mpi/MPIMasterDataManager.py C3PO_dev/sources/c3po/mpi/MPIMasterDataManager.py +--- C3PO/sources/c3po/mpi/MPIMasterDataManager.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPIMasterDataManager.py 2024-04-22 15:23:50.434561079 +0200 +@@ -11,7 +11,10 @@ + """ Contain the class MPIMasterDataManager. """ + from __future__ import print_function, division + import math +-from mpi4py import MPI ++try: ++ from mpi4py import MPI ++except: ++ from openmpi.mpi4py import MPI + + from c3po.mpi.MPITag import MPITag + +diff -Naur C3PO/sources/c3po/mpi/MPIMasterPhysicsDriver.py C3PO_dev/sources/c3po/mpi/MPIMasterPhysicsDriver.py +--- C3PO/sources/c3po/mpi/MPIMasterPhysicsDriver.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPIMasterPhysicsDriver.py 2024-04-22 15:18:14.976311404 +0200 +@@ -12,7 +12,10 @@ + from __future__ import print_function, division + + import sys +-from mpi4py import MPI ++try: ++ from mpi4py import MPI ++except: ++ from openmpi.mpi4py import MPI + + from c3po.PhysicsDriver import PhysicsDriver + from c3po.mpi.MPIRemoteProcess import MPIRemoteProcess +diff -Naur C3PO/sources/c3po/mpi/MPIRecipient.py C3PO_dev/sources/c3po/mpi/MPIRecipient.py +--- C3PO/sources/c3po/mpi/MPIRecipient.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPIRecipient.py 2024-04-22 15:24:26.066481454 +0200 +@@ -12,7 +12,10 @@ + These classes recieve data from a remote process. + """ + from __future__ import print_function, division +-from mpi4py import MPI ++try: ++ from mpi4py import MPI ++except: ++ from openmpi.mpi4py import MPI + import numpy + + import c3po.medcouplingCompat as mc +diff -Naur C3PO/sources/c3po/mpi/MPISender.py C3PO_dev/sources/c3po/mpi/MPISender.py +--- C3PO/sources/c3po/mpi/MPISender.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPISender.py 2024-04-22 15:21:10.785917851 +0200 +@@ -14,7 +14,10 @@ + from __future__ import print_function, division + import os + +-from mpi4py import MPI ++try: ++ from mpi4py import MPI ++except: ++ from openmpi.mpi4py import MPI + + import c3po.medcouplingCompat as mc + from c3po.mpi.MPITag import MPITag +diff -Naur C3PO/sources/c3po/mpi/MPIWorker.py C3PO_dev/sources/c3po/mpi/MPIWorker.py +--- C3PO/sources/c3po/mpi/MPIWorker.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/mpi/MPIWorker.py 2024-04-22 15:23:19.730629693 +0200 +@@ -10,7 +10,10 @@ + + """ Contain the class MPIWorker. """ + from __future__ import print_function, division +-from mpi4py import MPI ++try: ++ from mpi4py import MPI ++except: ++ from openmpi.mpi4py import MPI + + from c3po.mpi.MPITag import MPITag + from c3po.mpi.MPIRemoteProcess import MPIRemoteProcess +diff -Naur C3PO/sources/c3po/physicsDrivers/ALCYONE2Driver.py C3PO_dev/sources/c3po/physicsDrivers/ALCYONE2Driver.py +--- C3PO/sources/c3po/physicsDrivers/ALCYONE2Driver.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/sources/c3po/physicsDrivers/ALCYONE2Driver.py 2024-04-22 15:25:35.683325884 +0200 +@@ -10,7 +10,10 @@ + + """ Contain the class ALCYONE2Driver. """ + from __future__ import print_function, division +-import mpi4py.MPI as mpi ++try: ++ import mpi4py.MPI as mpi ++except: ++ import openmpi.mpi4py.MPI as mpi + + import pleiades + import pleiadesMPI +diff -Naur C3PO/tests/listings/main_mpi_collaborative.py C3PO_dev/tests/listings/main_mpi_collaborative.py +--- C3PO/tests/listings/main_mpi_collaborative.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/listings/main_mpi_collaborative.py 2024-04-22 15:12:56.254056622 +0200 +@@ -7,7 +7,10 @@ + def main_mpi_collaborative(): + import sys + import os +- from mpi4py import MPI ++ try: ++ from mpi4py import MPI ++ except: ++ from openmpi.mpi4py import MPI + + import c3po + import c3po.mpi +diff -Naur C3PO/tests/med_1D3D/main_medmpi_collaborative.py C3PO_dev/tests/med_1D3D/main_medmpi_collaborative.py +--- C3PO/tests/med_1D3D/main_medmpi_collaborative.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_1D3D/main_medmpi_collaborative.py 2024-04-22 15:10:42.764368751 +0200 +@@ -5,7 +5,10 @@ + + + def main_medmpi_collaborative(): +- import mpi4py.MPI as mpi ++ try: ++ import mpi4py.MPI as mpi ++ except: ++ import openmpi.mpi4py.MPI as mpi + import os + import math + import glob +diff -Naur C3PO/tests/med_1D3D/main_medmpi_reloading.py C3PO_dev/tests/med_1D3D/main_medmpi_reloading.py +--- C3PO/tests/med_1D3D/main_medmpi_reloading.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_1D3D/main_medmpi_reloading.py 2024-04-22 15:11:20.317280946 +0200 +@@ -2,7 +2,10 @@ + from __future__ import print_function, division + import math + import pytest +-from mpi4py import MPI as mpi ++try: ++ from mpi4py import MPI as mpi ++except: ++ from openmpi.mpi4py import MPI as mpi + + import c3po.medcouplingCompat as mc + +diff -Naur C3PO/tests/med_1D3D/main_mpi_hybrid.py C3PO_dev/tests/med_1D3D/main_mpi_hybrid.py +--- C3PO/tests/med_1D3D/main_mpi_hybrid.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_1D3D/main_mpi_hybrid.py 2024-04-22 15:11:53.357203690 +0200 +@@ -5,7 +5,10 @@ + + + def main_mpi_hybrid(): +- import mpi4py.MPI as mpi ++ try: ++ import mpi4py.MPI as mpi ++ except: ++ import openmpi.mpi4py.MPI as mpi + import os + import math + import glob +diff -Naur C3PO/tests/med_1D3D/main_workerThermo.py C3PO_dev/tests/med_1D3D/main_workerThermo.py +--- C3PO/tests/med_1D3D/main_workerThermo.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_1D3D/main_workerThermo.py 2024-04-22 15:12:20.878139339 +0200 +@@ -1,6 +1,9 @@ + # -*- coding: utf-8 -*- + from __future__ import print_function, division +-import mpi4py.MPI as mpi ++try: ++ import mpi4py.MPI as mpi ++except: ++ import openmpi.mpi4py.MPI as mpi + import os + import math + +diff -Naur C3PO/tests/med_Dussaix/main_master.py C3PO_dev/tests/med_Dussaix/main_master.py +--- C3PO/tests/med_Dussaix/main_master.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_Dussaix/main_master.py 2024-04-22 15:09:19.611564683 +0200 +@@ -5,7 +5,10 @@ + + + def main_master(): +- import mpi4py.MPI as mpi ++ try: ++ import mpi4py.MPI as mpi ++ except: ++ import openmpi.mpi4py.MPI as mpi + + import c3po + import c3po.mpi +diff -Naur C3PO/tests/med_Dussaix/main_medmpi_collaborative.py C3PO_dev/tests/med_Dussaix/main_medmpi_collaborative.py +--- C3PO/tests/med_Dussaix/main_medmpi_collaborative.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_Dussaix/main_medmpi_collaborative.py 2024-04-22 15:14:36.941821194 +0200 +@@ -5,7 +5,10 @@ + + + def main_medmpi_collaborative(): +- from mpi4py import MPI ++ try: ++ from mpi4py import MPI ++ except: ++ from openmpi.mpi4py import MPI + + import c3po + import c3po.mpi +diff -Naur C3PO/tests/med_Dussaix/main_mpi_collaborative.py C3PO_dev/tests/med_Dussaix/main_mpi_collaborative.py +--- C3PO/tests/med_Dussaix/main_mpi_collaborative.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_Dussaix/main_mpi_collaborative.py 2024-04-22 15:06:37.271951247 +0200 +@@ -5,7 +5,10 @@ + + + def main_mpi_collaborative(exchangeWithFiles): +- from mpi4py import MPI ++ try: ++ from mpi4py import MPI ++ except: ++ from openmpi.mpi4py import MPI + + import c3po + import c3po.mpi +diff -Naur C3PO/tests/med_Dussaix/main_mpi_masterWorkers.py C3PO_dev/tests/med_Dussaix/main_mpi_masterWorkers.py +--- C3PO/tests/med_Dussaix/main_mpi_masterWorkers.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_Dussaix/main_mpi_masterWorkers.py 2024-04-22 15:08:02.538749420 +0200 +@@ -3,7 +3,10 @@ + + + def main_mpi_masterWorkers(): +- import mpi4py.MPI as mpi ++ try: ++ import mpi4py.MPI as mpi ++ except: ++ import openmpi.mpi4py.MPI as mpi + + comm = mpi.COMM_WORLD + rank = comm.Get_rank() +diff -Naur C3PO/tests/med_Dussaix/main_workerNeutro.py C3PO_dev/tests/med_Dussaix/main_workerNeutro.py +--- C3PO/tests/med_Dussaix/main_workerNeutro.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_Dussaix/main_workerNeutro.py 2024-04-22 15:07:18.426855152 +0200 +@@ -3,7 +3,10 @@ + + + def main_workerNeutro(): +- import mpi4py.MPI as mpi ++ try: ++ import mpi4py.MPI as mpi ++ except: ++ import openmpi.mpi4py.MPI as mpi + + import c3po + import c3po.mpi +diff -Naur C3PO/tests/med_Dussaix/main_workerThermo.py C3PO_dev/tests/med_Dussaix/main_workerThermo.py +--- C3PO/tests/med_Dussaix/main_workerThermo.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_Dussaix/main_workerThermo.py 2024-04-22 15:08:40.043659524 +0200 +@@ -3,7 +3,10 @@ + + + def main_workerThermo(): +- import mpi4py.MPI as mpi ++ try: ++ import mpi4py.MPI as mpi ++ except: ++ import openmpi.mpi4py.MPI as mpi + + import c3po + import c3po.mpi +diff -Naur C3PO/tests/med_Dussaix/MPINeutroDriver.py C3PO_dev/tests/med_Dussaix/MPINeutroDriver.py +--- C3PO/tests/med_Dussaix/MPINeutroDriver.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/med_Dussaix/MPINeutroDriver.py 2024-04-22 15:10:08.236449480 +0200 +@@ -2,7 +2,10 @@ + # This class is the "neutronic" part of the two meshes model. + from __future__ import print_function, division + from math import * +-from mpi4py import MPI as mpi ++try: ++ from mpi4py import MPI as mpi ++except: ++ from openmpi.mpi4py import MPI as mpi + + import c3po.medcouplingCompat as mc + +diff -Naur C3PO/tests/unitests/exchanger/main_mpi_valueBcast.py C3PO_dev/tests/unitests/exchanger/main_mpi_valueBcast.py +--- C3PO/tests/unitests/exchanger/main_mpi_valueBcast.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/unitests/exchanger/main_mpi_valueBcast.py 2024-04-22 15:13:29.694978430 +0200 +@@ -1,6 +1,9 @@ + # -*- coding: utf-8 -*- + from __future__ import print_function +-import mpi4py.MPI as mpi ++try: ++ import mpi4py.MPI as mpi ++except: ++ import openmpi.mpi4py.MPI as mpi + + import c3po + import c3po.mpi +diff -Naur C3PO/tests/unitests/masterWorkers/main_masterWorkers.py C3PO_dev/tests/unitests/masterWorkers/main_masterWorkers.py +--- C3PO/tests/unitests/masterWorkers/main_masterWorkers.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/unitests/masterWorkers/main_masterWorkers.py 2024-04-22 15:13:52.957924036 +0200 +@@ -85,7 +85,10 @@ + masterDriver.terminate() + + def main_masterWorkers(): +- import mpi4py.MPI as mpi ++ try: ++ import mpi4py.MPI as mpi ++ except: ++ import openmpi.mpi4py.MPI as mpi + import c3po + import c3po.mpi + from tests.unitests.masterWorkers.WorkerDriver import WorkerDriver +diff -Naur C3PO/tests/unitests/remapper_2D/main_medmpi.py C3PO_dev/tests/unitests/remapper_2D/main_medmpi.py +--- C3PO/tests/unitests/remapper_2D/main_medmpi.py 2024-01-17 08:51:14.000000000 +0100 ++++ C3PO_dev/tests/unitests/remapper_2D/main_medmpi.py 2024-04-22 15:01:51.191576461 +0200 +@@ -3,7 +3,10 @@ + from __future__ import print_function, division + import math + import pytest +-import mpi4py.MPI as mpi ++try: ++ import mpi4py.MPI as mpi ++except: ++ import openmpi.mpi4py.MPI as mpi + + import c3po + import c3po.mpi -- 2.39.2