From: Guytri KASTANE Date: Tue, 22 Oct 2024 09:17:05 +0000 (+0200) Subject: bos #43318: updated configuration files for openturns 1.23 on salome native and added... X-Git-Url: http://git.salome-platform.org/gitweb/?a=commitdiff_plain;h=6448ed844d3f4fc0ccf088c1977ec5007feb5e15;p=tools%2Fsat_salome.git bos #43318: updated configuration files for openturns 1.23 on salome native and added new script --- diff --git a/applications/SALOME-master-native.pyconf b/applications/SALOME-master-native.pyconf index eed3f42..dadc1cd 100644 --- a/applications/SALOME-master-native.pyconf +++ b/applications/SALOME-master-native.pyconf @@ -107,7 +107,7 @@ APPLICATION : opencv : 'native' openmpi: 'native' openVKL : '0.11.0' - openturns: '1.22' + openturns: '1.23' ospray : '2.4.0' packaging : 'native' packagespy : '74152cd' diff --git a/products/compil_scripts/openturns-1.23.sh b/products/compil_scripts/openturns-1.23.sh new file mode 100755 index 0000000..ee9a1f9 --- /dev/null +++ b/products/compil_scripts/openturns-1.23.sh @@ -0,0 +1,556 @@ +#!/bin/bash + +echo "##########################################################################" +echo "openturns" $VERSION +echo "##########################################################################" + +LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION" + +export PATH=$(pwd)/bin:$PATH +export PYTHONPATH=$(pwd):$PYTHONPATH +export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH + +CMAKE_OPTIONS="" +if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then + echo "WARNING: setting CC and CXX environment variables and target MPI wrapper" + CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}" + CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}" +fi + +CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}" +CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib" +CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release" +CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}" + +if [ "$SAT_Python_IS_NATIVE" == "1" ] && [ "$LINUX_DISTRIBUTION" == "CO8" ] ; then + CMAKE_OPTIONS+=" -DPython_EXECUTABLE=${PYTHONBIN}" +fi + +if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then + CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig" +fi + +if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then + CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}" + CMAKE_OPTIONS+=" -Dtbb_DIR=${TBB_ROOT_DIR}/lib/cmake" +fi + +# https://github.com/persalys/persalys/issues/745 +case $LINUX_DISTRIBUTION in + UB22*|CO8*|CO9*|FD36|FD37|FD38) + echo "WARNING: switching OFF TBB support" + CMAKE_OPTIONS+=" -DUSE_TBB=OFF" + ;; + *) + ;; +esac + +# Blas/Lapack +if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then + CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0" + CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0" + CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so" + CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so" +fi + +### libxml2 settings +if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then + CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2" + CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so" + CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint" +fi + +# HDF5 +if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then + CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5" + CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF" + CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}" + CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib" + CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so" + CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so" + CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include" +fi + +# CMINPACK +if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then + CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}" + CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1" + CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a" +else + CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}" + CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1" +fi + +if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then + CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so" + CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so" +fi + +## nlopt +if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then + CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIR:STRING=${NLOPT_ROOT_DIR}/include" + CMAKE_OPTIONS+=" -DNLOPT_LIBRARY:STRING=${NLOPT_ROOT_DIR}/lib/libnlopt.so" + CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}" +fi + +# Boost +if [ -n "$BOOST_ROOT_DIR" ] && [ "$SAT_boost_IS_NATIVE" != "1" ]; then + CMAKE_OPTIONS+=" -DBOOST_DIR=${BOOST_ROOT_DIR}" +fi + +echo +echo "*** cmake" $CMAKE_OPTIONS + +rm -rf $BUILD_DIR +mkdir -p $BUILD_DIR/openturns +mkdir -p $BUILD_DIR/cache/pip + +# since we are using several nodes and share the same $HOME +# compilation can get screwed up. +# following this discussion: https://tex.stackexchange.com/questions/467824/is-it-possible-to-relocate-my-texmf-directory +# we define the following environment variables +export TEXMFHOME=$BUILD_DIR/texmf +export TEXMFVAR=$BUILD_DIR/texlive +export TEXMFCONFIG=$BUILD_DIR/texlive +mkdir -p $TEXMFHOME +mkdir -p $TEXMFVAR +mkdir -p $TEXMFCONFIG + +cd $BUILD_DIR/openturns +cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.23 +if [ $? -ne 0 ] +then + echo "ERROR on cmake" + exit 1 +fi + +echo +echo "*** make" $MAKE_OPTIONS +make $MAKE_OPTIONS +if [ $? -ne 0 ] +then + echo "ERROR on make" + exit 2 +fi + +echo +echo "*** make install" +make install +if [ $? -ne 0 ] +then + echo "ERROR on make install" + exit 3 +fi + +echo +echo "*** check installation" +if [ ! -d "${PRODUCT_INSTALL}/lib" ]; then + mkdir -p ${PRODUCT_INSTALL}/lib +fi + +if [ -d "${PRODUCT_INSTALL}/lib64" ]; then + echo "WARNING: moving lib64 to lib" + mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib/ + rm -rf ${PRODUCT_INSTALL}/lib64 +elif [ -d "${PRODUCT_INSTALL}/local/lib64" ]; then + echo "WARNING: moving local/lib64 to lib" + mv ${PRODUCT_INSTALL}/local/lib64/* ${PRODUCT_INSTALL}/lib/ + rm -rf ${PRODUCT_INSTALL}/local/lib64 +fi + +if [ -d ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages ]; then + mv ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages +fi + +#export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH} +#export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH} +#chmod +x ${SOURCE_DIR}/openturns-1.23/python/test/t_features.py +#${PYTHONBIN} ${SOURCE_DIR}/openturns-1.23/python/test/t_features.py +if [ $? -ne 0 ] +then + echo "ERROR testing Openturns features...." + exit 4 +fi + +cd $BUILD_DIR +mkdir ${BUILD_DIR}/mixmod +cd ${BUILD_DIR}/mixmod + +CMAKE_EXTRA_OPTIONS= +CMAKE_EXTRA_OPTIONS+=" -DMIXMOD_BUILD_EXAMPLES=ON" +CMAKE_EXTRA_OPTIONS+=" -DMIXMOD_BUILD_IOSTREAM=ON" +CMAKE_EXTRA_OPTIONS+=" -DMIXMOD_BUILD_CLI=ON" + +case $LINUX_DISTRIBUTION in + DB9) + echo "WARNING: Skipping MIXMOD - since libxml++ compilation is quite tedious on that platform" + echo "WARNING: You can either target the stretch archives and install libxml++-dev and compile or leave it as it is" + + ;; + *) + echo + echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/mixmod-2.1.11 + cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/mixmod-2.1.11 + if [ $? -ne 0 ]; then + echo "ERROR on cmake" + exit 1 + fi + + echo + echo "*** make" $MAKE_OPTIONS + make $MAKE_OPTIONS + if [ $? -ne 0 ]; then + echo "ERROR on make" + exit 2 + fi + + echo + echo "*** make install" + make install + if [ $? -ne 0 ]; then + echo "ERROR on make install" + exit 3 + fi + ;; +esac + +LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH} +if [[ -d "$SOURCE_DIR/otfftw-0.15" ]]; then + declare -A OTC + OTC["otagrum"]="0.10" + OTC["otfftw"]="0.15" + OTC["otmixmod"]="0.17" + OTC["otmorris"]="0.16" + OTC["otrobopt"]="0.14" + OTC["otsubsetinverse"]="1.10" + OTC["otsvm"]="0.14" + + for k in ${!OTC[@]}; + do + echo + echo "*** C O M P O N E N T : $k-${OTC[$k]} " + if [[ $k == "otagrum" ]]; then + echo "WARNING: skipping $k.." + continue + fi + cd $BUILD_DIR + mkdir ${BUILD_DIR}/$k + cd ${BUILD_DIR}/$k + CMAKE_EXTRA_OPTIONS= + if [[ $DIST_NAME == "CO" ]]; then + CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" # needs extra latex modules on CentOS 7, 8 + CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" + fi + if [[ $k == "otmixmod" ]]; then + CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" + CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}" + CMAKE_EXTRA_OPTIONS+=" -DMIXMOD_INCLUDE_DIR=$PRODUCT_INSTALL/include" + CMAKE_EXTRA_OPTIONS+=" -DMIXMOD_LIBRARIES=$PRODUCT_INSTALL/lib/libmixmod.so" + if [ ! -f $PRODUCT_INSTALL/lib/libmixmod.so ]; then + echo "WARNING: libmixmod.so is not installed where it is expected to be. Skipping..." + continue + fi + elif [[ $k == "otsubsetinverse" ]]; then + CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL" + CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON" + CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" + elif [[ $k == "otfftw" ]]; then + CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" + elif [[ $k == "otmorris" ]]; then + case $LINUX_DISTRIBUTION in + DB*|FD*|UB*) + echo "WARNING: switching OFF documentation build" + CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" + CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed. + ;; + esac + elif [[ $k == "otrobopt" ]]; then + case $LINUX_DISTRIBUTION in + DB*|FD*|UB*) + echo "WARNING: switching OFF documentation build" + CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" + CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed. + ;; + esac + elif [[ $k == "otsvm" ]]; then + case $LINUX_DISTRIBUTION in + DB*|FD*|UB*) + echo "WARNING: switching OFF documentation build" + CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" + CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed. + ;; + esac + elif [[ $k == "otpmml" ]]; then + CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" + fi + + echo + echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]} + cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]} + if [ $? -ne 0 ] + then + echo "ERROR on cmake" + exit 1 + fi + + echo + echo "*** make" $MAKE_OPTIONS + make $MAKE_OPTIONS + if [ $? -ne 0 ] + then + echo "ERROR on make" + exit 2 + fi + + echo + echo "*** make install" + make install + if [ $? -ne 0 ] + then + echo "ERROR on make install" + exit 3 + fi + echo "INFO: check presence of $PRODUCT_INSTALL/local" + if [ -d "$PRODUCT_INSTALL/local" ]; then + echo "INFO: $PRODUCT_INSTALL/local is present - reearrange ..." + if [ -d ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/dist-packages ]; then + mv ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/dist-packages ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/site-packages + fi + for D in $(ls $PRODUCT_INSTALL/local); do + echo "INFO: next subdirectory: $PRODUCT_INSTALL/local/$D" + if [ -d $PRODUCT_INSTALL/$D ]; then + cp -r $PRODUCT_INSTALL/local/$D/* $PRODUCT_INSTALL/$D/ + else + mv $PRODUCT_INSTALL/local/$D $PRODUCT_INSTALL/$D + fi + done + rm -rf $PRODUCT_INSTALL/local + fi + done + + declare -A OTP + OTP["otfmi"]="0.16.3" + OTP["otpod"]="0.6.11" + OTP["otwrapy"]="0.12.1" + for k in ${!OTP[@]}; + do + echo + echo "*** C O M P O N E N T : $k-${OTP[$k]} " + + if [ "$SAT_Python_IS_NATIVE" == "1" ]; then + if [ $k == "otfmi" ]; then + echo "INFO: install dill-0.3.4" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL + if [ $? -ne 0 ] + then + echo "FATAL: could not install dill-0.3.4" + exit 6 + fi + echo "INFO: install pythonfmu-0.6.3" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/pythonfmu-0.6.3/pythonfmu-0.6.3-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL + if [ $? -ne 0 ] + then + echo "FATAL: could not install pythonfmu-0.6.3" + exit 6 + fi + elif [ $k == "otpod" ]; then + if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then + echo "*** skipping: since system Cython too old" + continue + fi + echo "INFO: install scikit-learn-1.2.2" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-1.2.2/scikit-learn-1.2.2.tar.gz --no-deps --prefix=$PRODUCT_INSTALL --no-build-isolation --no-use-pep517 + if [ $? -ne 0 ] + then + echo "FATAL: could not install scikit-1.2.2" + exit 6 + fi + echo "INFO: install threadpoolctl-3.0.0" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL + if [ $? -ne 0 ] + then + echo "FATAL: could not install threadpoolctl 3.0.0" + exit 6 + fi + elif [ $k == "otwrapy" ]; then + echo "INFO: install tqdm-4.66.5" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/tqdm-4.66.5/tqdm-4.66.5-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL + if [ $? -ne 0 ] + then + echo "FATAL: could not install tqdm 4.66.5" + exit 6 + fi + fi + echo "INFO: check presence of $PRODUCT_INSTALL/local" + if [ -d "$PRODUCT_INSTALL/local" ]; then + echo "INFO: $PRODUCT_INSTALL/local is present - reearrange ..." + if [ -d ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/dist-packages ]; then + mv ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/dist-packages ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/site-packages + fi + for D in $(ls $PRODUCT_INSTALL/local); do + echo "INFO: next subdirectory: $PRODUCT_INSTALL/local/$D" + if [ -d $PRODUCT_INSTALL/$D ]; then + cp -r $PRODUCT_INSTALL/local/$D/* $PRODUCT_INSTALL/$D/ + else + mv $PRODUCT_INSTALL/local/$D $PRODUCT_INSTALL/$D + fi + done + rm -rf $PRODUCT_INSTALL/local + fi + # + else # non native Python + if [[ $k == "otfmi" ]]; then + echo "INFO: install dill-0.3.4" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps + if [ $? -ne 0 ] + then + echo "FATAL: could not install dill-0.3.4" + exit 5 + fi + elif [[ $k == "otpod" ]]; then + echo "INFO: install threadpoolctl-3.0.0" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps + if [ $? -ne 0 ] + then + echo "FATAL: could not install readpoolctl 3.0.0" + exit 6 + fi + echo "INFO: install joblib-1.1.0" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps + if [ $? -ne 0 ] + then + echo "FATAL: could not install joblib-1.1.0" + exit 6 + fi + echo "INFO: install decorator-5.1.0" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps + if [ $? -ne 0 ] + then + echo "FATAL: could not install decorator-5.1.0" + exit 6 + fi + if [ "${PYTHON_VERSION}" == "3.6" ]; then + echo "INFO: install scikit-learn-0.24.2" + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps + if [ $? -ne 0 ] + then + echo "FATAL: could not install scikit-0.24.2" + exit 6 + fi + elif [ "${PYTHON_VERSION}" == "3.9" ]; then + echo "INFO: install scikit-learn-1.2.2" + if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-1.2.2/scikit_learn-1.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl --no-deps + else + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-1.2.2/scikit-learn-1.2.2.tar.gz --no-deps + fi + if [ $? -ne 0 ] + then + echo "FATAL: could not install scikit-1.2.2" + exit 6 + fi + fi + fi + fi + + cd $BUILD_DIR + mkdir ${BUILD_DIR}/$k + cd ${BUILD_DIR}/$k + cp -R $SOURCE_DIR/$k-${OTP[$k]}/* . + # + ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip . --no-deps --prefix=$PRODUCT_INSTALL + if [ $? -ne 0 ]; then + echo "ERROR on ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip . --no-deps --prefix=$PRODUCT_INSTALL" + exit 4 + fi + # + echo "INFO: check presence of $PRODUCT_INSTALL/local" + if [ -d "$PRODUCT_INSTALL/local" ]; then + echo "INFO: $PRODUCT_INSTALL/local is present - reearrange ..." + if [ -d ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/dist-packages ]; then + mv ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/dist-packages ${PRODUCT_INSTALL}/local/lib/python${PYTHON_VERSION}/site-packages + fi + for D in $(ls $PRODUCT_INSTALL/local); do + echo "INFO: next subdirectory: $PRODUCT_INSTALL/local/$D" + if [ -d $PRODUCT_INSTALL/$D ]; then + cp -r $PRODUCT_INSTALL/local/$D/* $PRODUCT_INSTALL/$D/ + else + mv $PRODUCT_INSTALL/local/$D $PRODUCT_INSTALL/$D + fi + done + rm -rf $PRODUCT_INSTALL/local + fi + done + + # + # O P E N T U R N S + # + if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then + echo "INFO: site.py already installed" + elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then + # check first whether the init.py file is installed + echo "WARNING: missing init.py file. Installing it from system Python installation" + SITE_PATCH= + LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION" + case $LINUX_DISTRIBUTION in + DB11) + SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py + ;; + DB10) + SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py + ;; + UB22*) + SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py + ;; + UB20*) + SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py + ;; + FD32) + SITE_PATCH=/usr/lib/python3.8/site-packages/setuptools/site-patch.py + ;; + FD34) + SITE_PATCH=$SOURCE_DIR/addons/site-patch.py + ;; + FD36) + SITE_PATCH=$SOURCE_DIR/addons/site-patch.py + ;; + FD37) + SITE_PATCH=$SOURCE_DIR/addons/site-patch.py + ;; + FD38) + SITE_PATCH=$SOURCE_DIR/addons/site-patch.py + ;; + CO8*) + SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py + ;; + *) + SITE_PATCH=$SOURCE_DIR/addons/site-patch.py + ;; + esac + # check whether this file exists + if [ "${SITE_PATCH}" == "" ]; then + cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py + else + cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py + fi + elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then + cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py + elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site.py ]; then + cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py + else + echo "ERROR: could not find site-patch.py" + exit 7 + fi +fi + +cd ${PRODUCT_INSTALL}/lib +# On some nodes, the link to OT is not done properly. +if [[ ! -f libOT.so.0 ]]; then + echo "INFO: Fixing libOT.so" + ln -sf libOT.so.0.24.0 libOT.so.0.24 + ln -sf libOT.so.0.24 libOT.so.0 + ln -sf libOT.so.0 libOT.so +fi + +echo +echo "########## END" diff --git a/products/openturns.pyconf b/products/openturns.pyconf index e8705df..463bbb6 100644 --- a/products/openturns.pyconf +++ b/products/openturns.pyconf @@ -36,6 +36,14 @@ default_win : opt_depend : [] } +version_1_23 : +{ + compil_script : "openturns-1.23.sh" + patches : [] + depend : ['Python', 'lapack', 'hdf5', 'tbb', 'nlopt', 'libxml2', 'eigen', 'matplotlib', 'cminpack', 'FMILibrary', 'PyFMI', 'boost'] + opt_depend : ['pandas', 'statsmodels', 'patsy'] +} + version_1_22 : { compil_script : "openturns-1.22.sh"