From: abn Date: Mon, 20 Mar 2017 15:33:29 +0000 (+0100) Subject: Edges OK. Now ready for one last optim. X-Git-Url: http://git.salome-platform.org/gitweb/?a=commitdiff_plain;h=0306d79d207648ae1e6a3e703b0558d90cb15953;p=tools%2Fmedcoupling.git Edges OK. Now ready for one last optim. --- diff --git a/src/MEDCoupling/MEDCouplingUMesh_intersection.cxx b/src/MEDCoupling/MEDCouplingUMesh_intersection.cxx index 940c9199b..c3c345915 100644 --- a/src/MEDCoupling/MEDCouplingUMesh_intersection.cxx +++ b/src/MEDCoupling/MEDCouplingUMesh_intersection.cxx @@ -2006,7 +2006,7 @@ DataArrayInt *MEDCouplingUMesh::colinearize2D(double eps) */ bool MEDCouplingUMesh::OrderPointsAlongLine(const double * coo, int startNode, int endNode, const int * c, const int * cI, const int *idsBg, const int *endBg, - std::vector & pointIds) + std::vector & pointIds/*, std::vector & hitSegs*/) { using namespace std; @@ -2032,10 +2032,8 @@ bool MEDCouplingUMesh::OrderPointsAlongLine(const double * coo, int startNode, i const int idx = (*it).second; if (!go) { - if (idx == startNode) - go = 1; - if (idx == endNode) - go = 2; + if (idx == startNode) go = 1; + if (idx == endNode) go = 2; continue; } if (idx == endNode || idx == startNode) @@ -2064,7 +2062,7 @@ void MEDCouplingUMesh::ReplaceEdgeInFace(const int * sIdxConn, const int * sIdxC if (endPos == shortEnd) throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ReplaceEdgeInFace: internal error, should never happen!"); int d = distance(startPos, endPos); - if (d > 0 || d == (dst-1)) + if (d == 1 || d == (1-dst)) // don't use modulo, for neg numbers, result is implementation defined ... modifiedFace.insert(++startPos, insidePoints.begin(), insidePoints.end()); else modifiedFace.insert(++endPos, insidePoints.rbegin(), insidePoints.rend()); @@ -2109,9 +2107,6 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) const double * coo(_coords->begin()); MCAuto ret(DataArrayInt::New()); - std::cout << "BEGIN\n"; - std::cout << connSla->simpleRepr(); - { /************************* * STEP 1 -- faces @@ -2148,16 +2143,16 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) for( vector>::const_iterator it = S.begin(); it != S.end(); it++) { - int sIdx = (*it).second; - if (hit[sIdx]) continue; + int faceIdx = (*it).second; + if (hit[faceIdx]) continue; vector candidates, cands2; - myTree.getIntersectingElems(bbox+sIdx*2*SPACEDIM,candidates); + myTree.getIntersectingElems(bbox+faceIdx*2*SPACEDIM,candidates); // Keep only candidates whose normal matches the normal of current face for(vector::const_iterator it=candidates.begin();it!=candidates.end();it++) { - bool col = INTERP_KERNEL::isColinear3D(normalsP + sIdx*SPACEDIM, normalsP + *(it)*SPACEDIM, eps); - if (*it != sIdx && col) + bool col = INTERP_KERNEL::isColinear3D(normalsP + faceIdx*SPACEDIM, normalsP + *(it)*SPACEDIM, eps); + if (*it != faceIdx && col) cands2.push_back(*it); } if (!cands2.size()) @@ -2165,11 +2160,11 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) // Now rotate, and match barycenters -- this is where we will bring Intersect2DMeshes later INTERP_KERNEL::TranslationRotationMatrix rotation; - INTERP_KERNEL::TranslationRotationMatrix::Rotate3DTriangle(coo+SPACEDIM*(cDesc[cIDesc[sIdx]+1]), - coo+SPACEDIM*(cDesc[cIDesc[sIdx]+2]), - coo+SPACEDIM*(cDesc[cIDesc[sIdx]+3]), rotation); + INTERP_KERNEL::TranslationRotationMatrix::Rotate3DTriangle(coo+SPACEDIM*(cDesc[cIDesc[faceIdx]+1]), + coo+SPACEDIM*(cDesc[cIDesc[faceIdx]+2]), + coo+SPACEDIM*(cDesc[cIDesc[faceIdx]+3]), rotation); - MCAuto mPartRef(mDesc->buildPartOfMySelfSlice(sIdx, sIdx+1,1,false)); // false=zipCoords is called + MCAuto mPartRef(mDesc->buildPartOfMySelfSlice(faceIdx, faceIdx+1,1,false)); // false=zipCoords is called MCAuto mPartCand(mDesc->buildPartOfMySelf(&cands2[0], &cands2[0]+cands2.size(), false)); // false=zipCoords is called double * cooPartRef(mPartRef->_coords->getPointer()); double * cooPartCand(mPartCand->_coords->getPointer()); @@ -2177,16 +2172,17 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) rotation.transform_vector(cooPartRef+SPACEDIM*ii); for (int ii = 0; ii < mPartCand->_coords->getNumberOfTuples(); ii++) rotation.transform_vector(cooPartCand+SPACEDIM*ii); - double ze_z = cooPartRef[2]; // Localize faces in 2D thanks to barycenters MCAuto baryPart = mPartCand->computeCellCenterOfMass(); vector compo; compo.push_back(2); MCAuto baryPartZ = baryPart->keepSelectedComponents(compo); - MCAuto idsGoodPlane = baryPartZ->findIdsInRange(ze_z-eps, ze_z+eps); + MCAuto idsGoodPlane = baryPartZ->findIdsInRange(-eps, +eps); if (!idsGoodPlane->getNumberOfTuples()) continue; + baryPart = baryPart->selectByTupleId(*idsGoodPlane); + compo[0] = 0; compo.push_back(1); MCAuto baryPartXY = baryPart->keepSelectedComponents(compo); mPartRef->changeSpaceDimension(2,0.0); @@ -2200,7 +2196,11 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) { MCAuto tmp = dsi->findIdsInRange(0, 2); if (tmp->getNumberOfTuples() != dsi->getNumberOfTuples()) - throw INTERP_KERNEL::Exception("MEDCouplingUMesh::conformize3D: Non expected non-conformity. Only simple (=partition-like) non-conformities are handled."); + { + ostringstream oss; + oss << "MEDCouplingUMesh::conformize3D: Non expected non-conformity. Only simple (=partition-like) non-conformities are handled. Face #" << faceIdx << " violates this condition!"; + throw INTERP_KERNEL::Exception(oss.str()); + } } MCAuto ids = dsi->findIdsEqual(1); @@ -2209,28 +2209,29 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) continue; double checkSurf=0.0; + const int * idsGoodPlaneP(idsGoodPlane->begin()); for (const int * ii = ids->begin(); ii != ids->end(); ii++) { - int faceIdx = cands2[idsGoodPlane->begin()[*ii]]; + int faceIdx = cands2[idsGoodPlaneP[*ii]]; hit[faceIdx] = true; checkSurf += surfs->begin()[faceIdx]; } - if (fabs(checkSurf - surfs->begin()[sIdx]) > eps) + if (fabs(checkSurf - surfs->begin()[faceIdx]) > eps) { ostringstream oss; - oss << "MEDCouplingUMesh::conformize3D: Non expected non-conformity. Only simple (=partition-like) non-conformities are handled. Face #" << sIdx << " violates this condition!"; + oss << "MEDCouplingUMesh::conformize3D: Non expected non-conformity. Only simple (=partition-like) non-conformities are handled. Face #" << faceIdx << " violates this condition!"; throw INTERP_KERNEL::Exception(oss.str()); } // For all polyhedrons using this face, replace connectivity: vector polyIndices, packsIds, facePack; - for (int ii=revDescIP[sIdx]; ii < revDescIP[sIdx+1]; ii++) + for (int ii=revDescIP[faceIdx]; ii < revDescIP[faceIdx+1]; ii++) polyIndices.push_back(revDescP[ii]); ret->pushBackValsSilent(polyIndices.data(),polyIndices.data()+polyIndices.size()); // Current face connectivity - const int * sIdxConn = cDesc + cIDesc[sIdx] + 1; - const int * sIdxConnE = cDesc + cIDesc[sIdx+1]; + const int * sIdxConn = cDesc + cIDesc[faceIdx] + 1; + const int * sIdxConnE = cDesc + cIDesc[faceIdx+1]; connSla->findPackIds(polyIndices, sIdxConn, sIdxConnE, packsIds); // Deletion of old faces int jj=0; @@ -2238,7 +2239,7 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) { if (packsIds[jj] == -1) // The below should never happen - if a face is used several times, with a different layout of the nodes - // it means that is is already conform, so it is not hit by the algorithm. The algorithm only hits + // it means that is is already conform, so it is *not* hit by the algorithm. The algorithm only hits // faces which are actually used only once, by a single cell. This is different for edges below. throw INTERP_KERNEL::Exception("MEDCouplingUMesh::conformize3D: Could not find face in connectivity! Internal error."); else @@ -2250,24 +2251,19 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) // Build pack from the face to insert: int faceIdx = cands2[idsGoodPlane->getIJ(*ii,0)]; int facePack2Sz; -// vector toto; -// connSlaDesc->getSimplePackSafe(faceIdx, toto); const int * facePack2 = connSlaDesc->getSimplePackSafePtr(faceIdx, facePack2Sz); // contains the type! // Insert it in all hit polyhedrons: for (vector::const_iterator it=polyIndices.begin(); it!=polyIndices.end(); ++it) connSla->pushBackPack(*it, facePack2+1, facePack2+facePack2Sz); // without the type } } - } + } // end step1 // Set back modified connectivity MCAuto cAuto; cAuto.takeRef(_nodal_connec); MCAuto cIAuto; cIAuto.takeRef(_nodal_connec_index); connSla->convertToPolyhedronConn(cAuto, cIAuto); - std::cout << "BEFORE STEP2\n"; - std::cout << connSla->simpleRepr(); - { /************************ * STEP 2 -- edges @@ -2275,18 +2271,20 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) // Now we have a face-conform mesh. // Recompute descending - MCAuto descDNU(DataArrayInt::New()),descIDNU(DataArrayInt::New()),revDesc(DataArrayInt::New()),revDescI(DataArrayInt::New()); + MCAuto desc(DataArrayInt::New()),descI(DataArrayInt::New()),revDesc(DataArrayInt::New()),revDescI(DataArrayInt::New()); // Rebuild desc connectivity with orientation this time!! - MCAuto mDesc(buildDescendingConnectivity2(descDNU,descIDNU,revDesc,revDescI)); + MCAuto mDesc(buildDescendingConnectivity2(desc,descI,revDesc,revDescI)); const int *revDescIP(revDescI->getConstPointer()), *revDescP(revDesc->getConstPointer()); + const int *descIP(descI->getConstPointer()), *descP(desc->getConstPointer()); const int *cDesc(mDesc->getNodalConnectivity()->begin()),*cIDesc(mDesc->getNodalConnectivityIndex()->begin()); - MCAuto connSlaDesc(MEDCouplingSkyLineArray::New(mDesc->getNodalConnectivityIndex(), mDesc->getNodalConnectivity())); - std::cout << "writing VTK!\n"; - mDesc->writeVTK("/tmp/toto_desc_confInter.vtu", true); + MCAuto ciDeepC(mDesc->getNodalConnectivityIndex()->deepCopy()); + MCAuto cDeepC(mDesc->getNodalConnectivity()->deepCopy()); + MCAuto connSlaDesc(MEDCouplingSkyLineArray::New(ciDeepC, cDeepC)); MCAuto desc2(DataArrayInt::New()),descI2(DataArrayInt::New()),revDesc2(DataArrayInt::New()),revDescI2(DataArrayInt::New()); MCAuto mDesc2 = mDesc->buildDescendingConnectivity(desc2,descI2,revDesc2,revDescI2); - std::cout << "writing VTK2!\n"; - mDesc2->writeVTK("/tmp/toto_desc2_confInter.vtu", true); +// std::cout << "writing!\n"; +// mDesc->writeVTK("/tmp/toto_desc_confInter.vtu"); +// mDesc2->writeVTK("/tmp/toto_desc2_confInter.vtu"); const int *revDescIP2(revDescI2->getConstPointer()), *revDescP2(revDesc2->getConstPointer()); const int *cDesc2(mDesc2->getNodalConnectivity()->begin()),*cIDesc2(mDesc2->getNodalConnectivityIndex()->begin()); MCAuto bboxArr(mDesc2->getBoundingBoxForBBTree()); @@ -2352,7 +2350,7 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) rotation.transform_vector(cooPartRef+SPACEDIM*ii); for (int ii = 0; ii < mPartCand->_coords->getNumberOfTuples(); ii++) rotation.transform_vector(cooPartCand+SPACEDIM*ii); - double ze_y = cooPartRef[1], ze_z = cooPartRef[2]; + // Eliminate all edges for which y or z is not null MCAuto baryPart = mPartCand->computeCellCenterOfMass(); @@ -2372,9 +2370,6 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) mPartCand->getNodalConnectivity()->begin(), mPartCand->getNodalConnectivityIndex()->begin(), idsGoodLine->begin(), idsGoodLine->end(), /*out*/insidePoints); - std::cout << "edge " << eIdx << "\n"; - for (int kk =0; kk < insidePoints.size(); kk++) - std::cout << " " << nodeMapInv->begin()[insidePoints[kk]] << "\n"; if (!isSplit) // current segment remains in one piece continue; @@ -2385,36 +2380,47 @@ DataArrayInt *MEDCouplingUMesh::conformize3D(double eps) vector polyIndices, packsIds, facePack; // For each face implying this edge -// for (int ii=revDescIP2[eIdx]; ii < revDescIP2[eIdx+1]; ii++) -// { -// int faceIdx = abs(revDescP2[ii]) - 1; -// -// //connSlaDesc -// -// // Current face connectivity - find it in the original connectivity -// const int * sIdxConn = cDesc + cIDesc[faceIdx] + 1; -// const int * sIdxConnE = cDesc + cIDesc[faceIdx+1]; -// -// vector modifiedFace; -// ReplaceEdgeInFace(sIdxConn, sIdxConnE, startNode, endNode, insidePoints, /*out*/modifiedFace); -// std::cout << "modifiedFace WAS " << eIdx << "\n"; -// for (const int * kk =sIdxConn; kk < sIdxConnE; kk++) -// std::cout << " " << *kk << "\n"; -// std::cout << "modifiedFace IS " << eIdx << "\n"; -// for (int kk =0; kk < modifiedFace.size(); kk++) -// std::cout << " " << modifiedFace[kk] << "\n"; -// -// int k3 = 0; -// std::cout << "BEFORE\n"; -// std::cout << connSla->simpleRepr(); -// connSlaDesc->replacePack(faceIdx, modifiedFace); -// std::cout << "AFTER\n"; -// std::cout << connSla->simpleRepr(); -// } + for (int ii=revDescIP2[eIdx]; ii < revDescIP2[eIdx+1]; ii++) + { + int faceIdx = revDescP2[ii]; + // each cell where this face is involved connectivity will be modified: + ret->pushBackValsSilent(revDescP + revDescIP[faceIdx], revDescP + revDescIP[faceIdx+1]); + + // Current face connectivity + const int * sIdxConn = cDesc + cIDesc[faceIdx] + 1; + const int * sIdxConnE = cDesc + cIDesc[faceIdx+1]; + + vector modifiedFace; + ReplaceEdgeInFace(sIdxConn, sIdxConnE, startNode, endNode, insidePoints, /*out*/modifiedFace); + modifiedFace.insert(modifiedFace.begin(), INTERP_KERNEL::NORM_POLYGON); + connSlaDesc->replaceSimplePack(faceIdx, modifiedFace.data(), modifiedFace.data()+modifiedFace.size()); + } } - } - // Set back modified connectivity - connSla->convertToPolyhedronConn(cAuto, cIAuto); + + // Rebuild 3D connectivity from descending: + MCAuto newConn(MEDCouplingSkyLineArray::New()); + MCAuto superIdx(DataArrayInt::New()); superIdx->alloc(getNumberOfCells()+1); superIdx->fillWithValue(0); + MCAuto idx(DataArrayInt::New()); idx->alloc(1); idx->fillWithValue(0); + MCAuto vals(DataArrayInt::New()); vals->alloc(0); + newConn->set3(superIdx, idx, vals); + for(int ii = 0; ii < getNumberOfCells(); ii++) + for (int jj=descIP[ii]; jj < descIP[ii+1]; jj++) + { + int sz, faceIdx = abs(descP[jj])-1; + bool orient = descP[jj]>0; + const int * p = connSlaDesc->getSimplePackSafePtr(faceIdx, sz); + if (orient) + newConn->pushBackPack(ii, p+1, p+sz); // +1 to skip type + else + { + vector rev(sz-1); + for (int kk=0; kkpushBackPack(ii, rev.data(), rev.data()+sz-1); + } + } + // And finally: + newConn->convertToPolyhedronConn(cAuto, cIAuto); + } // end step2 ret = ret->buildUniqueNotSorted(); return ret.retn(); diff --git a/src/MEDCoupling_Swig/MEDCouplingBasicsTest5.py b/src/MEDCoupling_Swig/MEDCouplingBasicsTest5.py index 0dd4550a3..43ef390fa 100644 --- a/src/MEDCoupling_Swig/MEDCouplingBasicsTest5.py +++ b/src/MEDCoupling_Swig/MEDCouplingBasicsTest5.py @@ -3720,6 +3720,17 @@ class MEDCouplingBasicsTest5(unittest.TestCase): self.assertEqual(idxRef, idx.getValues()) self.assertEqual(cRef, val.getValues()) + print 'toto' + a, b, c = [0,0,0], [0], [] + sla1 = MEDCouplingSkyLineArray() + sla1.set3(DataArrayInt(a),DataArrayInt(b),DataArrayInt(c)) + print sla1 + sla1.pushBackPack(0, [2,3,4]) + print sla1 + sla1.pushBackPack(1, [4,5,6]) + print sla1 + sla1.pushBackPack(0, [7,8,9]) + print sla1 pass def testMEDCouplingUMeshgenerateGraph(self): diff --git a/src/MEDCoupling_Swig/MEDCouplingIntersectTest.py b/src/MEDCoupling_Swig/MEDCouplingIntersectTest.py index 0e2469a68..8b3666c96 100644 --- a/src/MEDCoupling_Swig/MEDCouplingIntersectTest.py +++ b/src/MEDCoupling_Swig/MEDCouplingIntersectTest.py @@ -930,7 +930,6 @@ class MEDCouplingIntersectTest(unittest.TestCase): ret = mesh.conformize3D(1.0e-8) mretDesc, _, _, _, _ = mesh.buildDescendingConnectivity() - mretDesc.writeVTK("/tmp/toto_conf_desc.vtu") c, cI = mretDesc.getNodalConnectivity().getValues(), mretDesc.getNodalConnectivityIndex().getValues() cRef = [5, 1, 0, 2, 3, 5, 5, 7, 6, 4, 5, 1, 5, 4, 0, 5, 0, 4, 6, 2, 5, 2, 6, 7, 3, 5, 3, 7, 8, 5, 7, 5, 8, 5, 5, 1, 8, 5, 1, 3, 8, 5, 9, 1, 3, 10, 5, 11, 12, 7, 5, 5, 9, 11, 5, 1, 5, 3, @@ -956,35 +955,80 @@ class MEDCouplingIntersectTest(unittest.TestCase): 7, 11, 21, 19, -1, 19, 21, 20, 18]) cI = DataArrayInt([0, 37, 74, 104, 134]) mesh.setConnectivity(c, cI) - - mretDesc, _, _, _, _ = mesh.buildDescendingConnectivity() - mretDesc2, _, _, _, _ = mretDesc.buildDescendingConnectivity() - mretDesc.writeVTK("/tmp/toto_desc.vtu") - mretDesc2.writeVTK("/tmp/toto_desc2.vtu") +# mretDesc, _, _, _, _ = mesh.buildDescendingConnectivity() +# mretDesc2, _, _, _, _ = mretDesc.buildDescendingConnectivity() +# mretDesc.writeVTK("/tmp/toto_desc.vtu") +# mretDesc2.writeVTK("/tmp/toto_desc2.vtu") ret = mesh.conformize3D(1.0e-8) mretDesc, _, _, _, _ = mesh.buildDescendingConnectivity() mretDesc2, _, _, _, _ = mretDesc.buildDescendingConnectivity() - mretDesc.writeVTK("/tmp/toto_conf_desc.vtu") - mretDesc2.writeVTK("/tmp/toto_conf_desc2.vtu") +# mretDesc.writeVTK("/tmp/toto_conf_desc.vtu") +# mretDesc2.writeVTK("/tmp/toto_conf_desc2.vtu") + c0, cI0 = mesh.getNodalConnectivity().getValues(), mesh.getNodalConnectivityIndex().getValues() c, cI = mretDesc.getNodalConnectivity().getValues(), mretDesc.getNodalConnectivityIndex().getValues() - c2, cI2 = mretDesc.getNodalConnectivity().getValues(), mretDesc.getNodalConnectivityIndex().getValues() - cRef = [] - cIRef = [] - cRef2 = [] - cIRef2 = [] - print mretDesc2.getNumberOfCells() - return + c2, cI2 = mretDesc2.getNodalConnectivity().getValues(), mretDesc2.getNodalConnectivityIndex().getValues() + cRef0 = [31, 1, 0, 2, 3, 12, -1, 5, 14, 13, 7, 6, 4, -1, 1, 5, 4, 0, -1, 0, 4, 6, 2, -1, 2, 6, 7, 3, -1, 3, 7, 13, 12, -1, 5, 1, 12, 13, 14, 31, 9, 15, 11, 10, 8, -1, 5, 9, 8, 4, -1, 4, 8, 10, 6, -1, 6, 10, 11, 7, -1, 7, 11, 15, 14, 13, -1, 9, 5, 14, 15, -1, 5, 14, 13, 7, 6, 4, 31, 16, 1, 12, 3, 17, -1, 18, 19, 7, 13, 14, 5, -1, 16, 18, 5, 1, -1, 3, 7, 19, 17, -1, 17, 19, 18, 16, -1, 5, 1, 12, 13, 14, -1, 3, 7, 13, 12, 31, 5, 14, 13, 7, 19, 18, -1, 20, 21, 11, 15, 9, -1, 18, 20, 9, 5, -1, 7, 11, 21, 19, -1, 19, 21, 20, 18, -1, 9, 5, 14, 15, -1, 7, 11, 15, 14, 13] + cIRef0 = [0, 39, 78, 117, 156] + cRef = [5, 1, 0, 2, 3, 12, 5, 5, 14, 13, 7, 6, 4, 5, 1, 5, 4, 0, 5, 0, 4, 6, 2, 5, 2, 6, 7, 3, 5, 3, 7, 13, 12, 5, 5, 1, 12, 13, 14, 5, 9, 15, 11, 10, 8, 5, 5, 9, 8, 4, 5, 4, 8, 10, 6, 5, 6, 10, 11, 7, 5, 7, 11, 15, 14, 13, 5, 9, 5, 14, 15, 5, 16, 1, 12, 3, 17, 5, 18, 19, 7, 13, 14, 5, 5, 16, 18, 5, 1, 5, 3, 7, 19, 17, 5, 17, 19, 18, 16, 5, 20, 21, 11, 15, 9, 5, 18, 20, 9, 5, 5, 7, 11, 21, 19, 5, 19, 21, 20, 18] + cIRef = [0, 6, 13, 18, 23, 28, 33, 39, 45, 50, 55, 60, 66, 71, 77, 84, 89, 94, 99, 105, 110, 115, 120] + cRef2 = [1, 1, 0, 1, 0, 2, 1, 2, 3, 1, 3, 12, 1, 12, 1, 1, 5, 14, 1, 14, 13, 1, 13, 7, 1, 7, 6, 1, 6, 4, 1, 4, 5, 1, 1, 5, 1, 4, 0, 1, 6, 2, 1, 7, 3, 1, 13, 12, 1, 9, 15, 1, 15, 11, 1, 11, 10, 1, 10, 8, 1, 8, 9, 1, 5, 9, 1, 8, 4, 1, 10, 6, 1, 11, 7, 1, 15, 14, 1, 16, 1, 1, 3, 17, 1, 17, 16, 1, 18, 19, 1, 19, 7, 1, 5, 18, 1, 16, 18, 1, 19, 17, 1, 20, 21, 1, 21, 11, 1, 9, 20, 1, 18, 20, 1, 21, 19] + cIRef2 = [0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48, 51, 54, 57, 60, 63, 66, 69, 72, 75, 78, 81, 84, 87, 90, 93, 96, 99, 102, 105, 108, 111, 114, 117] self.assertEqual(22, mretDesc.getNumberOfCells()) - self.assertEqual(40, mretDesc2.getNumberOfCells()) + self.assertEqual(39, mretDesc2.getNumberOfCells()) + self.assertEqual(cRef0, c0) + self.assertEqual(cIRef0, cI0) self.assertEqual(cRef, c) self.assertEqual(cIRef, cI) self.assertEqual(cRef2, c2) self.assertEqual(cIRef2, cI2) - self.assertEqual([0,1,2,3], ret.getValues()) + self.assertEqual(set([0,1,2,3]), set(ret.getValues())) pass + def testSwig2Conformize3D3(self): + """ LMEC's case (hexagonal prism) """ + eps = 1.0e-7 # 1.0e-8 is too fine + mesh = MEDCouplingUMesh('merge', 3) + coo = DataArrayDouble([(0,0,0),(-0.0054,-0.00935307,0),(0.0054,-0.00935307,0),(0.0108,0,0),(0.0054,0.00935307,0),(-0.0054,0.00935307,0),(-0.0108,6.93889e-18,0),(-0.0054,-0.0153031,0),(0.0054,-0.0153031,0),(0.0105529,-0.0123281,0),(0.0159529,-0.002975,0),(0.0159529,0.002975,0),(0.0105529,0.0123281,0),(0.0054,0.0153031,0),(-0.0054,0.0153031,0),(-0.0105529,0.0123281,0),(-0.0159529,0.002975,0),(-0.0159529,-0.002975,0),(-0.0105529,-0.0123281,0),(-0.00883523,-0.0153031,0),(0.00883523,-0.0153031,0),(0.0176705,0,0),(0.00883523,0.0153031,0),(-0.00883523,0.0153031,0),(-0.0176705,2.16401e-18,0),(0,0,0.05),(-0.0054,-0.00935307,0.05),(0.0054,-0.00935307,0.05),(0.0108,0,0.05),(0.0054,0.00935307,0.05),(-0.0054,0.00935307,0.05),(-0.0108,6.93889e-18,0.05),(-0.0054,-0.0153031,0.05),(0.0054,-0.0153031,0.05),(0.0105529,-0.0123281,0.05),(0.0159529,-0.002975,0.05),(0.0159529,0.002975,0.05),(0.0105529,0.0123281,0.05),(0.0054,0.0153031,0.05),(-0.0054,0.0153031,0.05),(-0.0105529,0.0123281,0.05),(-0.0159529,0.002975,0.05),(-0.0159529,-0.002975,0.05),(-0.0105529,-0.0123281,0.05),(-0.00883523,-0.0153031,0.05),(0.00883523,-0.0153031,0.05),(0.0176705,0,0.05),(0.00883523,0.0153031,0.05),(-0.00883523,0.0153031,0.05),(-0.0176705,2.16401e-18,0.05),(0.0176705,0,0.05),(0.00883523,0.0153031,0.05),(-0.00883523,0.0153031,0.05),(-0.0176705,2.16401e-18,0.05),(-0.00883523,-0.0153031,0.05),(0.00883523,-0.0153031,0.05),(0.0176705,0,0.15),(0.00883523,0.0153031,0.15),(-0.00883523,0.0153031,0.15),(-0.0176705,2.16401e-18,0.15),(-0.00883523,-0.0153031,0.15),(0.00883523,-0.0153031,0.15)]) + mesh.setCoords(coo) + c = DataArrayInt([31, 1, 0, 2, -1, 25, 26, 27, -1, 2, 27, 26, 1, -1, 0, 25, 27, 2, -1, 1, 26, 25, 0, 31, 2, 0, 3, -1, 25, 27, 28, -1, 3, 28, 27, 2, -1, 0, 25, 28, 3, -1, 2, 27, 25, 0, 31, 3, 0, 4, -1, 25, 28, 29, -1, 4, 29, 28, 3, -1, 0, 25, 29, 4, -1, 3, 28, 25, 0, 31, 4, 0, 5, -1, 25, 29, 30, -1, 5, 30, 29, 4, -1, 0, 25, 30, 5, -1, 4, 29, 25, 0, 31, 5, 0, 6, -1, 25, 30, 31, -1, 6, 31, 30, 5, -1, 0, 25, 31, 6, -1, 5, 30, 25, 0, 31, 6, 0, 1, -1, 25, 31, 26, -1, 1, 26, 31, 6, -1, 0, 25, 26, 1, -1, 6, 31, 25, 0, 31, 1, 2, 8, 7, -1, 27, 26, 32, 33, -1, 7, 32, 26, 1, -1, 8, 33, 32, 7, -1, 2, 27, 33, 8, -1, 1, 26, 27, 2, 31, 2, 3, 10, 9, -1, 28, 27, 34, 35, -1, 9, 34, 27, 2, -1, 10, 35, 34, 9, -1, 3, 28, 35, 10, -1, 2, 27, 28, 3, 31, 3, 4, 12, 11, -1, 29, 28, 36, 37, -1, 11, 36, 28, 3, -1, 12, 37, 36, 11, -1, 4, 29, 37, 12, -1, 3, 28, 29, 4, 31, 4, 5, 14, 13, -1, 30, 29, 38, 39, -1, 13, 38, 29, 4, -1, 14, 39, 38, 13, -1, 5, 30, 39, 14, -1, 4, 29, 30, 5, 31, 5, 6, 16, 15, -1, 31, 30, 40, 41, -1, 15, 40, 30, 5, -1, 16, 41, 40, 15, -1, 6, 31, 41, 16, -1, 5, 30, 31, 6, 31, 6, 1, 18, 17, -1, 26, 31, 42, 43, -1, 17, 42, 31, 6, -1, 18, 43, 42, 17, -1, 1, 26, 43, 18, -1, 6, 31, 26, 1, 31, 19, 18, 1, 7, -1, 43, 44, 32, 26, -1, 7, 32, 44, 19, -1, 1, 26, 32, 7, -1, 18, 43, 26, 1, -1, 19, 44, 43, 18, 31, 20, 8, 2, 9, -1, 33, 45, 34, 27, -1, 9, 34, 45, 20, -1, 2, 27, 34, 9, -1, 8, 33, 27, 2, -1, 20, 45, 33, 8, 31, 21, 10, 3, 11, -1, 35, 46, 36, 28, -1, 11, 36, 46, 21, -1, 3, 28, 36, 11, -1, 10, 35, 28, 3, -1, 21, 46, 35, 10, 31, 22, 12, 4, 13, -1, 37, 47, 38, 29, -1, 13, 38, 47, 22, -1, 4, 29, 38, 13, -1, 12, 37, 29, 4, -1, 22, 47, 37, 12, 31, 23, 14, 5, 15, -1, 39, 48, 40, 30, -1, 15, 40, 48, 23, -1, 5, 30, 40, 15, -1, 14, 39, 30, 5, -1, 23, 48, 39, 14, 31, 24, 16, 6, 17, -1, 41, 49, 42, 31, -1, 17, 42, 49, 24, -1, 6, 31, 42, 17, -1, 16, 41, 31, 6, -1, 24, 49, 41, 16, 31, 50, 51, 52, 53, 54, 55, -1, 56, 61, 60, 59, 58, 57, -1, 50, 56, 57, 51, -1, 51, 57, 58, 52, -1, 52, 58, 59, 53, -1, 53, 59, 60, 54, -1, 54, 60, 61, 55, -1, 55, 61, 56, 50]) + cI = DataArrayInt([0, 23, 46, 69, 92, 115, 138, 168, 198, 228, 258, 288, 318, 348, 378, 408, 438, 468, 498, 542]) + mesh.setConnectivity(c, cI) + mesh.mergeNodes(eps) # the initial case has double nodes + +# mretDesc, _, _, _, _ = mesh.buildDescendingConnectivity() +# mretDesc2, _, _, _, _ = mretDesc.buildDescendingConnectivity() +# mretDesc.writeVTK("/tmp/toto_desc.vtu") +# mretDesc2.writeVTK("/tmp/toto_desc2.vtu") +# print mretDesc2.getNumberOfCells() + + ret = mesh.conformize3D(eps) + + mretDesc, _, _, _, _ = mesh.buildDescendingConnectivity() + mretDesc2, _, _, _, _ = mretDesc.buildDescendingConnectivity() +# mesh.writeVTK("/tmp/toto_conf.vtu") +# mretDesc.writeVTK("/tmp/toto_conf_desc.vtu") +# mretDesc2.writeVTK("/tmp/toto_conf_desc2.vtu") + c0, cI0 = mesh.getNodalConnectivity().getValues(), mesh.getNodalConnectivityIndex().getValues() + c, cI = mretDesc.getNodalConnectivity().getValues(), mretDesc.getNodalConnectivityIndex().getValues() + c2, cI2 = mretDesc2.getNodalConnectivity().getValues(), mretDesc2.getNodalConnectivityIndex().getValues() + cRef0 = [31, 1, 0, 2, -1, 25, 26, 27, -1, 2, 27, 26, 1, -1, 0, 25, 27, 2, -1, 1, 26, 25, 0, 31, 2, 0, 3, -1, 25, 27, 28, -1, 3, 28, 27, 2, -1, 0, 25, 28, 3, -1, 2, 27, 25, 0, 31, 3, 0, 4, -1, 25, 28, 29, -1, 4, 29, 28, 3, -1, 0, 25, 29, 4, -1, 3, 28, 25, 0, 31, 4, 0, 5, -1, 25, 29, 30, -1, 5, 30, 29, 4, -1, 0, 25, 30, 5, -1, 4, 29, 25, 0, 31, 5, 0, 6, -1, 25, 30, 31, -1, 6, 31, 30, 5, -1, 0, 25, 31, 6, -1, 5, 30, 25, 0, 31, 6, 0, 1, -1, 25, 31, 26, -1, 1, 26, 31, 6, -1, 0, 25, 26, 1, -1, 6, 31, 25, 0, 31, 1, 2, 8, 7, -1, 27, 26, 32, 33, -1, 7, 32, 26, 1, -1, 8, 33, 32, 7, -1, 2, 27, 33, 8, -1, 1, 26, 27, 2, 31, 2, 3, 10, 9, -1, 28, 27, 34, 35, -1, 9, 34, 27, 2, -1, 10, 35, 34, 9, -1, 3, 28, 35, 10, -1, 2, 27, 28, 3, 31, 3, 4, 12, 11, -1, 29, 28, 36, 37, -1, 11, 36, 28, 3, -1, 12, 37, 36, 11, -1, 4, 29, 37, 12, -1, 3, 28, 29, 4, 31, 4, 5, 14, 13, -1, 30, 29, 38, 39, -1, 13, 38, 29, 4, -1, 14, 39, 38, 13, -1, 5, 30, 39, 14, -1, 4, 29, 30, 5, 31, 5, 6, 16, 15, -1, 31, 30, 40, 41, -1, 15, 40, 30, 5, -1, 16, 41, 40, 15, -1, 6, 31, 41, 16, -1, 5, 30, 31, 6, 31, 6, 1, 18, 17, -1, 26, 31, 42, 43, -1, 17, 42, 31, 6, -1, 18, 43, 42, 17, -1, 1, 26, 43, 18, -1, 6, 31, 26, 1, 31, 19, 18, 1, 7, -1, 43, 44, 32, 26, -1, 7, 32, 44, 19, -1, 1, 26, 32, 7, -1, 18, 43, 26, 1, -1, 19, 44, 43, 18, 31, 20, 8, 2, 9, -1, 33, 45, 34, 27, -1, 9, 34, 45, 20, -1, 2, 27, 34, 9, -1, 8, 33, 27, 2, -1, 20, 45, 33, 8, 31, 21, 10, 3, 11, -1, 35, 46, 36, 28, -1, 11, 36, 46, 21, -1, 3, 28, 36, 11, -1, 10, 35, 28, 3, -1, 21, 46, 35, 10, 31, 22, 12, 4, 13, -1, 37, 47, 38, 29, -1, 13, 38, 47, 22, -1, 4, 29, 38, 13, -1, 12, 37, 29, 4, -1, 22, 47, 37, 12, 31, 23, 14, 5, 15, -1, 39, 48, 40, 30, -1, 15, 40, 48, 23, -1, 5, 30, 40, 15, -1, 14, 39, 30, 5, -1, 23, 48, 39, 14, 31, 24, 16, 6, 17, -1, 41, 49, 42, 31, -1, 17, 42, 49, 24, -1, 6, 31, 42, 17, -1, 16, 41, 31, 6, -1, 24, 49, 41, 16, 31, 50, 55, 54, 53, 52, 51, -1, 46, 50, 51, 47, 37, 36, -1, 47, 51, 52, 48, 39, 38, -1, 48, 52, 53, 49, 41, 40, -1, 49, 53, 54, 44, 43, 42, -1, 44, 54, 55, 45, 33, 32, -1, 45, 55, 50, 46, 35, 34, -1, 25, 26, 27, -1, 25, 31, 26, -1, 27, 26, 32, 33, -1, 26, 31, 42, 43, -1, 43, 44, 32, 26, -1, 41, 49, 42, 31, -1, 25, 29, 30, -1, 25, 30, 31, -1, 30, 29, 38, 39, -1, 31, 30, 40, 41, -1, 39, 48, 40, 30, -1, 25, 27, 28, -1, 28, 27, 34, 35, -1, 33, 45, 34, 27, -1, 35, 46, 36, 28, -1, 25, 28, 29, -1, 29, 28, 36, 37, -1, 37, 47, 38, 29] + cIRef0 = [0, 23, 46, 69, 92, 115, 138, 168, 198, 228, 258, 288, 318, 348, 378, 408, 438, 468, 498, 631] + cRef = [5, 1, 0, 2, 5, 25, 26, 27, 5, 2, 27, 26, 1, 5, 0, 25, 27, 2, 5, 1, 26, 25, 0, 5, 2, 0, 3, 5, 25, 27, 28, 5, 3, 28, 27, 2, 5, 0, 25, 28, 3, 5, 3, 0, 4, 5, 25, 28, 29, 5, 4, 29, 28, 3, 5, 0, 25, 29, 4, 5, 4, 0, 5, 5, 25, 29, 30, 5, 5, 30, 29, 4, 5, 0, 25, 30, 5, 5, 5, 0, 6, 5, 25, 30, 31, 5, 6, 31, 30, 5, 5, 0, 25, 31, 6, 5, 6, 0, 1, 5, 25, 31, 26, 5, 1, 26, 31, 6, 5, 1, 2, 8, 7, 5, 27, 26, 32, 33, 5, 7, 32, 26, 1, 5, 8, 33, 32, 7, 5, 2, 27, 33, 8, 5, 2, 3, 10, 9, 5, 28, 27, 34, 35, 5, 9, 34, 27, 2, 5, 10, 35, 34, 9, 5, 3, 28, 35, 10, 5, 3, 4, 12, 11, 5, 29, 28, 36, 37, 5, 11, 36, 28, 3, 5, 12, 37, 36, 11, 5, 4, 29, 37, 12, 5, 4, 5, 14, 13, 5, 30, 29, 38, 39, 5, 13, 38, 29, 4, 5, 14, 39, 38, 13, 5, 5, 30, 39, 14, 5, 5, 6, 16, 15, 5, 31, 30, 40, 41, 5, 15, 40, 30, 5, 5, 16, 41, 40, 15, 5, 6, 31, 41, 16, 5, 6, 1, 18, 17, 5, 26, 31, 42, 43, 5, 17, 42, 31, 6, 5, 18, 43, 42, 17, 5, 1, 26, 43, 18, 5, 19, 18, 1, 7, 5, 43, 44, 32, 26, 5, 7, 32, 44, 19, 5, 19, 44, 43, 18, 5, 20, 8, 2, 9, 5, 33, 45, 34, 27, 5, 9, 34, 45, 20, 5, 20, 45, 33, 8, 5, 21, 10, 3, 11, 5, 35, 46, 36, 28, 5, 11, 36, 46, 21, 5, 21, 46, 35, 10, 5, 22, 12, 4, 13, 5, 37, 47, 38, 29, 5, 13, 38, 47, 22, 5, 22, 47, 37, 12, 5, 23, 14, 5, 15, 5, 39, 48, 40, 30, 5, 15, 40, 48, 23, 5, 23, 48, 39, 14, 5, 24, 16, 6, 17, 5, 41, 49, 42, 31, 5, 17, 42, 49, 24, 5, 24, 49, 41, 16, 5, 50, 55, 54, 53, 52, 51, 5, 46, 50, 51, 47, 37, 36, 5, 47, 51, 52, 48, 39, 38, 5, 48, 52, 53, 49, 41, 40, 5, 49, 53, 54, 44, 43, 42, 5, 44, 54, 55, 45, 33, 32, 5, 45, 55, 50, 46, 35, 34] + cIRef = [0, 4, 8, 13, 18, 23, 27, 31, 36, 41, 45, 49, 54, 59, 63, 67, 72, 77, 81, 85, 90, 95, 99, 103, 108, 113, 118, 123, 128, 133, 138, 143, 148, 153, 158, 163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 213, 218, 223, 228, 233, 238, 243, 248, 253, 258, 263, 268, 273, 278, 283, 288, 293, 298, 303, 308, 313, 318, 323, 328, 333, 338, 343, 348, 353, 358, 363, 368, 373, 378, 385, 392, 399, 406, 413, 420, 427] + cRef2 = [1, 1, 0, 1, 0, 2, 1, 2, 1, 1, 25, 26, 1, 26, 27, 1, 27, 25, 1, 2, 27, 1, 26, 1, 1, 0, 25, 1, 0, 3, 1, 3, 2, 1, 27, 28, 1, 28, 25, 1, 3, 28, 1, 0, 4, 1, 4, 3, 1, 28, 29, 1, 29, 25, 1, 4, 29, 1, 0, 5, 1, 5, 4, 1, 29, 30, 1, 30, 25, 1, 5, 30, 1, 0, 6, 1, 6, 5, 1, 30, 31, 1, 31, 25, 1, 6, 31, 1, 1, 6, 1, 31, 26, 1, 2, 8, 1, 8, 7, 1, 7, 1, 1, 26, 32, 1, 32, 33, 1, 33, 27, 1, 7, 32, 1, 8, 33, 1, 3, 10, 1, 10, 9, 1, 9, 2, 1, 27, 34, 1, 34, 35, 1, 35, 28, 1, 9, 34, 1, 10, 35, 1, 4, 12, 1, 12, 11, 1, 11, 3, 1, 28, 36, 1, 36, 37, 1, 37, 29, 1, 11, 36, 1, 12, 37, 1, 5, 14, 1, 14, 13, 1, 13, 4, 1, 29, 38, 1, 38, 39, 1, 39, 30, 1, 13, 38, 1, 14, 39, 1, 6, 16, 1, 16, 15, 1, 15, 5, 1, 30, 40, 1, 40, 41, 1, 41, 31, 1, 15, 40, 1, 16, 41, 1, 1, 18, 1, 18, 17, 1, 17, 6, 1, 31, 42, 1, 42, 43, 1, 43, 26, 1, 17, 42, 1, 18, 43, 1, 19, 18, 1, 7, 19, 1, 43, 44, 1, 44, 32, 1, 44, 19, 1, 20, 8, 1, 9, 20, 1, 33, 45, 1, 45, 34, 1, 45, 20, 1, 21, 10, 1, 11, 21, 1, 35, 46, 1, 46, 36, 1, 46, 21, 1, 22, 12, 1, 13, 22, 1, 37, 47, 1, 47, 38, 1, 47, 22, 1, 23, 14, 1, 15, 23, 1, 39, 48, 1, 48, 40, 1, 48, 23, 1, 24, 16, 1, 17, 24, 1, 41, 49, 1, 49, 42, 1, 49, 24, 1, 50, 55, 1, 55, 54, 1, 54, 53, 1, 53, 52, 1, 52, 51, 1, 51, 50, 1, 46, 50, 1, 51, 47, 1, 52, 48, 1, 53, 49, 1, 54, 44, 1, 55, 45] + cIRef2 = [0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48, 51, 54, 57, 60, 63, 66, 69, 72, 75, 78, 81, 84, 87, 90, 93, 96, 99, 102, 105, 108, 111, 114, 117, 120, 123, 126, 129, 132, 135, 138, 141, 144, 147, 150, 153, 156, 159, 162, 165, 168, 171, 174, 177, 180, 183, 186, 189, 192, 195, 198, 201, 204, 207, 210, 213, 216, 219, 222, 225, 228, 231, 234, 237, 240, 243, 246, 249, 252, 255, 258, 261, 264, 267, 270, 273, 276, 279, 282, 285, 288, 291, 294, 297, 300, 303, 306, 309, 312, 315, 318, 321, 324, 327, 330, 333, 336, 339, 342, 345, 348, 351, 354, 357, 360, 363] + self.assertEqual(85, mretDesc.getNumberOfCells()) + self.assertEqual(121, mretDesc2.getNumberOfCells()) + self.assertEqual(cRef0, c0) + self.assertEqual(cIRef0, cI0) + self.assertEqual(cRef, c) + self.assertEqual(cIRef, cI) + self.assertEqual(cRef2, c2) + self.assertEqual(cIRef2, cI2) + self.assertEqual(set([18]), set(ret.getValues())) + pass if __name__ == '__main__': unittest.main()