pandas : 'native'
ParaView : {tag:'5.11.0', base: 'no', section: 'version_5_11_0_MPI', hpc: 'yes'}
PERSALYS : 'f386013d'
- petsc : {tag : '3.16.0', section: 'version_3_16_0'}
+ petsc : '3.20.5'
Pillow : 'native'
planegcs : '0.18-3cb6890'
psutil : 'native'
doxygen : '1.8.14'
eigen : '3.3.4'
embree : '3.12.2'
+ fftw : '3.3.10'
FMILibrary : '2.0.3'
fonttools : '4.48.1'
freeimage : '3.16.0'
patsy : '0.5.4'
ParaView : {tag:'5.11.0', base: 'no', section: 'version_5_11_0_MPI', hpc: 'yes'}
PERSALYS: 'f386013d'
- petsc : {tag : '3.16.0', base: 'no', section: 'version_3_16_0', hpc: 'yes'}
+ petsc : '3.19.4'
Pillow : '8.4.0'
planegcs : '0.18-3cb6890'
psutil : '5.9.8'
--- /dev/null
+#!/bin/bash
+
+echo "##########################################################################"
+echo "FFTW" $VERSION
+echo "##########################################################################"
+
+echo
+echo "*** configure --libdir=${MPI_ROOT_DIR} --prefix=${PRODUCT_INSTALL} "
+${SOURCE_DIR}/configure \
+ --enable-mpi \
+ --prefix=${PRODUCT_INSTALL} \
+ CFLAGS=-fPIC
+
+if [ $? -ne 0 ]; then
+ echo "ERROR on configure"
+ exit 1
+fi
+
+echo
+echo "*** make"
+make
+if [ $? -ne 0 ]; then
+ echo "ERROR on make"
+ exit 2
+fi
+
+echo
+echo "*** make install"
+make install
+if [ $? -ne 0 ]; then
+ echo "ERROR on make install"
+ exit 3
+fi
+
+echo
+echo "########## END"
--- /dev/null
+#!/bin/bash
+
+echo "##########################################################################"
+echo "Petsc" $VERSION
+echo "##########################################################################"
+
+NATIVE_PATH="/usr"
+LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
+echo "WARNING: "
+case $LINUX_DISTRIBUTION in
+ UB*|DB*)
+ NATIVE_PATH="/usr/lib/x86_64-linux-gnu"
+ ;;
+ *)
+ ;;
+esac
+
+cp -r $SOURCE_DIR/* .
+
+CONFIGURE_FLAGS=
+CONFIGURE_FLAGS+=" --download-slepc=ext/slepc-3.19.2.tar.gz"
+
+if [ -f "${NATIVE_PATH}/liblapack.a" ] && [ "${SAT_lapack_IS_NATIVE}" == "1" ]; then
+ CONFIGURE_FLAGS+=" --with-blaslapack=1"
+elif [ -n "${LAPACK_ROOT_DIR}" ] && [ "${SAT_lapack_IS_NATIVE}" != "1" ]; then
+ CONFIGURE_FLAGS+=" --with-blaslapack-dir=${LAPACK_ROOT_DIR}"
+else
+ CONFIGURE_FLAGS+=" --download-f2cblaslapack=ext/f2cblaslapack-3.8.0.q2.tar.gz"
+fi
+
+CONFIGURE_FLAGS+=" --with-python-dir=${PYTHON_ROOT_DIR}"
+CONFIGURE_FLAGS+=" --with-hdf5-dir=${HDF5_ROOT_DIR}"
+
+if [ -f "${NATIVE_PATH}/libfftw3.a" ] && [ "${SAT_fftw_IS_NATIVE}" == "1" ]; then
+ CONFIGURE_FLAGS+=" --with-fftw=1"
+elif [ -n "${FFTW_ROOT_DIR}" ] && [ "${SAT_fftw_IS_NATIVE}" != "1" ]; then
+ CONFIGURE_FLAGS+=" --with-fftw-dir=${FFTW_ROOT_DIR}"
+else
+ CONFIGURE_FLAGS+=" --download-fftw=ext/fftw-3.3.10.tar.gz"
+fi
+
+CONFIGURE_FLAGS+=" --with-cuda=0" #
+CONFIGURE_FLAGS+=" --with-debugging=0" # by default Petsc is build in debug mode
+CONFIGURE_FLAGS+=" --with-petsc4py=yes"
+CONFIGURE_FLAGS+=" --download-slepc-configure-arguments=--with-slepc4py=yes "
+
+if [ -f "${NATIVE_PATH}/libmetis.so" ] && [ "${SAT_metis_IS_NATIVE}" == "1" ]; then
+ CONFIGURE_FLAGS+=" --with-metis=1"
+elif [ -n "${METIS_ROOT_DIR}" ] && [ "${SAT_metis_IS_NATIVE}" != "1" ]; then
+ CONFIGURE_FLAGS+=" --with-metis-dir=${METIS_ROOT_DIR}"
+else
+ CONFIGURE_FLAGS+=" --download-metis=ext/metis-5.1.0-p11.tar.gz"
+fi
+
+echo
+if [ -n "${SAT_HPC}" ]; then
+ CONFIUGRE_FLAGS+=" --with-med-dir=${MEDFILE_ROOT_DIR}"
+
+ if [ -f "${NATIVE_PATH}/libHYPRE_core.so" ]; then
+ CONFIGURE_FLAGS+=" --with-hypre=1"
+ else
+ CONFIGURE_FLAGS+=" --download-hypre=ext/hypre-2.28.0.tar.gz"
+ fi
+
+ if [ -f "${NATIVE_PATH}/libptscotch.so"] && [ "${SAT_ptscotch_IS_NATIVE}"]; then
+ CONFIGURE_FLAGS+=" --with-ptscotch=1"
+ elif [ -n "${PTSCOTCH_ROOT_DIR}"] && [ "${SAT_ptscotch_IS_NATIVE}" != "1" ]; then
+ CONFIGURE_FLAGS+=" --with-ptscoth=${PTSCOTCH_ROOT_DIR}"
+ else
+ CONFIGURE_FLAGS+=" --download-ptscotch=ext/scotch_7.0.3.tar.gz"
+ fi
+
+ if [ -n "${MPI4PY_ROOT_DIR}" ]; then
+ CONFIGURE_FLAGS+=" --with-mpi4py-dir=${MPI4PY_ROOT_DIR}"
+ else
+ CONFIGURE_FLAGS+=" --download-mpi4py=ext/mpi4py-3.1.4.tar.gz"
+ fi
+
+ CONFIGURE_FLAGS+=" --with-mpi-dir=${MPI_ROOT_DIR}"
+
+else
+ CONFIGURE_FLAGS+=" --with-mpi=0"
+fi
+
+echo "*** configure --prefix=${PRODUCT_INSTALL} ${CONFIGURE_FLAGS}"
+./configure --prefix=${PRODUCT_INSTALL} ${CONFIGURE_FLAGS}
+if [ $? -ne 0 ]
+then
+ echo "ERROR on configure"
+ exit 1
+fi
+
+MAKE_OPTIONS="PETSC_DIR=${BUILD_DIR}"
+
+echo
+echo "*** make" $MAKE_OPTIONS
+make $MAKE_OPTIONS
+if [ $? -ne 0 ]
+then
+ echo "ERROR on make"
+ exit 2
+fi
+
+# CentOS 6 automatically set PETSC_ARCH to arch-linux2-c-debug : remove arch specification
+# MAKE_OPTIONS=$MAKE_OPTIONS" PETSC_ARCH=arch-linux-c-debug"
+
+echo
+echo "*** make install"
+make $MAKE_OPTIONS install
+if [ $? -ne 0 ]
+then
+ echo "ERROR on make install"
+ exit 3
+fi
+
+echo
+echo "*** make check"
+make $MAKE_OPTIONS check
+if [ $? -ne 0 ]
+then
+ echo "ERROR on make check"
+ exit 4
+fi
+
+echo
+echo "########## END"
+
--- /dev/null
+#!/bin/bash
+
+echo "##########################################################################"
+echo "Petsc" $VERSION
+echo "##########################################################################"
+
+NATIVE_PATH="/usr"
+LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
+echo "WARNING: "
+case $LINUX_DISTRIBUTION in
+ UB*|DB*)
+ NATIVE_PATH="/usr/lib/x86_64-linux-gnu"
+ ;;
+ *)
+ ;;
+esac
+
+cp -r $SOURCE_DIR/* .
+
+CONFIGURE_FLAGS=
+CONFIGURE_FLAGS=" --PETSC_DIR$=${BUILD_DIR}"
+CONFIGURE_FLAGS=" --PETSC_ARCH=installed-arch-linux2-c-opt"
+
+CONFIGURE_FLAGS+=" --download-slepc=ext/slepc-3.20.1.tar.gz"
+
+if [ -f "${NATIVE_PATH}/liblapack.a" ] && [ "${SAT_lapack_IS_NATIVE}" == "1" ]; then
+ CONFIGURE_FLAGS+=" --with-blaslapack=1"
+elif [ -n "${LAPACK_ROOT_DIR}" ] && [ "${SAT_lapack_IS_NATIVE}" != "1" ]; then
+ CONFIGURE_FLAGS+=" --with-blaslapack-dir=${LAPACK_ROOT_DIR}"
+else
+ CONFIGURE_FLAGS+=" --download-f2cblaslapack=ext/f2cblaslapack-3.8.0.q2.tar.gz"
+fi
+
+CONFIGURE_FLAGS+=" --with-python-dir=${PYTHON_ROOT_DIR}"
+CONFIGURE_FLAGS+=" --with-hdf5-dir=${HDF5_ROOT_DIR}"
+
+if [ -f "${NATIVE_PATH}/libfftw3.a" ] && [ "${SAT_fftw_IS_NATIVE}" == "1" ]; then
+ CONFIGURE_FLAGS+=" --with-fftw=1"
+elif [ -n "${FFTW_ROOT_DIR}" ] && [ "${SAT_fftw_IS_NATIVE}" != "1" ]; then
+ CONFIGURE_FLAGS+=" --with-fftw-dir=${FFTW_ROOT_DIR}"
+else
+ CONFIGURE_FLAGS+=" --download-fftw=ext/fftw-3.3.10.tar.gz"
+fi
+
+CONFIGURE_FLAGS+=" --with-cuda=0" #
+CONFIGURE_FLAGS+=" --with-debugging=0" # by default Petsc is build in debug mode
+CONFIGURE_FLAGS+=" --with-petsc4py=yes"
+CONFIGURE_FLAGS+=" --download-slepc-configure-arguments=--with-slepc4py=yes "
+
+if [ -f "${NATIVE_PATH}/libmetis.so" ] && [ "${SAT_metis_IS_NATIVE}" == "1" ]; then
+ CONFIGURE_FLAGS+=" --with-metis=1"
+elif [ -n "${METIS_ROOT_DIR}" ] && [ "${SAT_metis_IS_NATIVE}" != "1" ]; then
+ CONFIGURE_FLAGS+=" --with-metis-dir=${METIS_ROOT_DIR}"
+else
+ CONFIGURE_FLAGS+=" --download-metis=ext/metis-5.1.0-p11.tar.gz"
+fi
+
+echo
+if [ -n "${SAT_HPC}" ]; then
+ CONFIUGRE_FLAGS+=" --with-med-dir=${MEDFILE_ROOT_DIR}"
+
+ if [ -f "${NATIVE_PATH}/libHYPRE_core.so" ]; then
+ CONFIGURE_FLAGS+=" --with-hypre=1"
+ else
+ CONFIGURE_FLAGS+=" --download-hypre=ext/hypre-2.29.0.tar.gz"
+ fi
+
+ if [ -f "${NATIVE_PATH}/libptscotch.so"] && [ "${SAT_ptscotch_IS_NATIVE}"]; then
+ CONFIGURE_FLAGS+=" --with-ptscotch=1"
+ elif [ -n "${PTSCOTCH_ROOT_DIR}"] && [ "${SAT_ptscotch_IS_NATIVE}" != "1" ]; then
+ CONFIGURE_FLAGS+=" --with-ptscoth=${PTSCOTCH_ROOT_DIR}"
+ else
+ CONFIGURE_FLAGS+=" --download-ptscotch=ext/scotch_7.0.3.tar.gz"
+ fi
+
+ if [ -n "${MPI4PY_ROOT_DIR}" ]; then
+ CONFIGURE_FLAGS+=" --with-mpi4py-dir=${MPI4PY_ROOT_DIR}"
+ else
+ CONFIGURE_FLAGS+=" --download-mpi4py=ext/mpi4py-3.1.5.tar.gz"
+ fi
+
+ CONFIGURE_FLAGS+=" --with-mpi-dir=${MPI_ROOT_DIR}"
+
+else
+ CONFIGURE_FLAGS+=" --with-mpi=0"
+fi
+
+echo "*** configure --prefix=${PRODUCT_INSTALL} ${CONFIGURE_FLAGS}"
+./configure --prefix=${PRODUCT_INSTALL} ${CONFIGURE_FLAGS}
+if [ $? -ne 0 ]
+then
+ echo "ERROR on configure"
+ exit 1
+fi
+
+echo
+echo "*** make" $MAKE_OPTIONS
+make $MAKE_OPTIONS
+if [ $? -ne 0 ]
+then
+ echo "ERROR on make"
+ exit 2
+fi
+
+# CentOS 6 automatically set PETSC_ARCH to arch-linux2-c-debug : remove arch specification
+# MAKE_OPTIONS=$MAKE_OPTIONS" PETSC_ARCH=arch-linux-c-debug"
+
+echo
+echo "*** make install"
+make $MAKE_OPTIONS install
+if [ $? -ne 0 ]
+then
+ echo "ERROR on make install"
+ exit 3
+fi
+
+echo
+echo "*** make check"
+make $MAKE_OPTIONS check
+if [ $? -ne 0 ]
+then
+ echo "ERROR on make check"
+ exit 4
+fi
+
+echo
+echo "########## END"
+
env.prepend('LD_LIBRARY_PATH', os.path.join(prereq_dir, 'lib'))
def set_nativ_env(env):
- pass
+ prereq_dir='/usr'
+ prereq_bin='/usr/bin'
+ prereq_inc='/usr/include'
+ try:
+ import distro
+ if any(distribution in distro.name().lower() for distribution in ["rocky", "centos", "fedora"]) :
+ prereq_dir='/usr'
+ prereq_bin='/usr/bin'
+ prereq_inc='/usr/include/fftw'
+ elif any(distribution in distro.name().lower() for distribution in ["debian", "ubuntu"]) :
+ prereq_dir='/usr/lib/x86_64-linux-gnu'
+ prereq_inc='/usr/include'
+ except:
+ import patform
+ #FIXME
+
+ env.set('FFTW_ROOT_DIR', prereq_dir)
+ env.set('FFTW_INCLUDE_DIR', prereq_inc)
+ env.prepend('LD_LIBRARY_PATH', prereq_dir)
--- /dev/null
+--- petsc_ref/config/BuildSystem/config/package.py 2023-07-31 17:00:27.000000000 +0200
++++ petsc_dev/config/BuildSystem/config/package.py 2023-09-18 16:49:13.546128117 +0200
+@@ -595,8 +595,11 @@
+ for libdir in [self.libdir, self.altlibdir]:
+ libdirpath = os.path.join(d, libdir)
+ if not os.path.isdir(libdirpath):
+- self.logPrint(self.PACKAGE+': UserSpecified DirPath not found.. skipping: '+libdirpath)
+- continue
++ if os.path.isdir(d):
++ libdirpath = d
++ else:
++ self.logPrint(self.PACKAGE+': UserSpecified DirPath not found.. skipping: '+libdirpath)
++ continue
+ for l in self.generateLibList(libdirpath):
+ yield('User specified root directory '+self.PACKAGE, d, l, self.getIncludeDirs(d, self.includedir))
+
--- /dev/null
+diff -Naur petsc_ref/config/BuildSystem/config/packages/mpi4py.py petsc/config/BuildSystem/config/packages/mpi4py.py
+--- petsc_ref/config/BuildSystem/config/packages/mpi4py.py 2021-11-18 23:17:43.058783475 +0100
++++ petsc/config/BuildSystem/config/packages/mpi4py.py 2021-11-18 23:58:42.759826515 +0100
+@@ -22,7 +22,7 @@
+ return
+
+ def Install(self):
+- installLibPath = os.path.join(self.installDir, 'lib')
++ installLibPath = os.path.join(self.installDir)
+ if self.setCompilers.isDarwin(self.log):
+ apple = 'You may need to\n (csh/tcsh) setenv MACOSX_DEPLOYMENT_TARGET 10.X\n (sh/bash) MACOSX_DEPLOYMENT_TARGET=10.X; export MACOSX_DEPLOYMENT_TARGET\nbefore running make on PETSc'
+ else:
+@@ -73,7 +73,7 @@
+ raise RuntimeError('mpi4py unreconginzed mode of building mpi4py! Suggest using --download-mpi4py!')
+
+ if self.directory:
+- installLibPath = os.path.join(self.directory, 'lib')
++ installLibPath = os.path.join(self.directory)
+ if not os.path.isfile(os.path.join(installLibPath,'mpi4py','__init__.py')):
+ raise RuntimeError('mpi4py not found at %s' % installLibPath)
+ self.addMakeMacro('PETSC_MPI4PY_PYTHONPATH',installLibPath)
post_script: "fix_permissions.sh"
}
+version_3_20_5 :
+{
+ compil_script : "petsc-3.20.5.sh"
+ depend : ["hdf5", "Python", "lapack","fftw", "llvm", "metis", "medfile", "mpi4py", "scotch" ]
+}
+
+version_3_19_4 :
+{
+ compil_script : "petsc-3.19.4.sh"
+ depend : ["hdf5", "Python", "lapack","fftw", "llvm", "metis", "medfile" ]
+ patches: ['petsc-3.19.4-mpi4py.patch','petsc-3.19.4-libpath.patch']
+}
+
version_3_17_0 :
{
compil_script : "petsc-3.17.0.sh"
