better SOLVERLAB.sh SOLVERLAB.pyconf for hpc mandatory

diff --git a/products/SOLVERLAB.pyconf b/products/SOLVERLAB.pyconf
index 4c43dfa270011061f856cea76ff3f7141bd42d9c..14b4e9c50ef1082451064970dd53705dd8f5832c 100644 (file)
--- a/products/SOLVERLAB.pyconf
+++ b/products/SOLVERLAB.pyconf
@@ -44,6 +44,8 @@ default_MPI :
 {
     depend :
     [
+        'openmpi',
+        'mpi4py',
         'hdf5',
         'matplotlib',
         'medfile',
@@ -54,9 +56,8 @@ default_MPI :
         'KERNEL',
         'GUI',
         'MEDCOUPLING',
-        'openmpi'
     ]
-    opt_depend : ['mpi4py']
+    # opt_depend : ['mpi4py']
 }
 
 version_V9_10_0 :

diff --git a/products/compil_scripts/SOLVERLAB.sh b/products/compil_scripts/SOLVERLAB.sh
index fa08db5d84aa48b83d3a5215855a3d9feb95fdb2..1a33809490897b2ebb85076f5d2428f33005c28a 100755 (executable)
--- a/products/compil_scripts/SOLVERLAB.sh
+++ b/products/compil_scripts/SOLVERLAB.sh
@@ -1,74 +1,71 @@
 #!/bin/bash
 
-echo "##########################################################################"
-echo "SOLVERLAB" $VERSION
-echo "##########################################################################"
 
 rm -rf $BUILD_DIR
 mkdir $BUILD_DIR
 cd $BUILD_DIR
 
+[ "${USER}" == "xxxxwambeke" ] && envs # wambeke pretty print environ
+
+
+function f_ancestor_locate() {
+  local tmp=$(tail -1 locate.tmp)  # last one could be not pertinent
+  cd $(dirname ${tmp})
+  local n=${1:-1}
+  for ((; n != 0; n--)); do
+    cd $(dirname ${PWD})
+  done
+  pwd
+}
+
+function f_get_MPI4PY_ROOT_DIR {
+  # get where pip3 install mpi4py
+  # because compilation needs mpi4py.i
+
+  # oops returns INSTALL/ParaView/lib/python3.9/site-packages/openmpi/mpi4py, no mpi4py.i included
+  # python -c "import os, mpi4py ; OPD=os.path.dirname ; print(OPD(OPD(mpi4py.__file__)))"
+
+  # other way compilation needs mpi4py.i
+  # example /usr/lib64/python3.9/site-packages/openmpi/mpi4py/include/mpi4py/mpi4py.i
+  locate mpi4py.i > locate.tmp  # get some... last one could be not pertinent
+  f_ancestor_locate 3
+}
+
+MPI4PY_ROOT_DIR=$(f_get_MPI4PY_ROOT_DIR)   # example native /usr/lib64/python3.9/site-packages/openmpi (.../mpi4py!)
+
+set -x
+
+# cat locate.tmp  # mpi4py.i see some... last one could be not pertinent
+
+SVL_TYPE="GNU"
+SVL_BUILD_TYPE="Release"
+SOLVERLAB_WITH_MPI="ON"                    # because we want ${SAT_HPC} mode mandatory
+SOLVERLAB_WITH_DOCUMENTATION="ON"          # could be set OFF for faster compilation
+# MPI_HOME="/usr/lib64/openmpi"            # useless, given from SAT
+CMAKE_CXX_COMPILER=${MPI_CXX_COMPILER}     # ${MPI_HOME}/bin/mpic++ ?mpicxx?
+CMAKE_C_COMPILER=${MPI_C_COMPILER}         # ${MPI_HOME}/bin/mpicc
+
 CMAKE_OPTIONS=
 CMAKE_OPTIONS+=" -DPython_ROOT_DIR=${PYTHON_ROOT_DIR}"
 CMAKE_OPTIONS+=" -DPython_EXECUTABLE=${PYTHONBIN}"
 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX=${PRODUCT_INSTALL}"
+CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE=${SVL_BUILD_TYPE}"
 
-if [ ! -d $SOURCE_DIR/solverlabGUI ]; then
-    if [ $VERSION == "V9_6_0" ]; then
-        # GUI was ported after 9.6.0
-        CMAKE_OPTIONS+=" -DCOREFLOWS_WITH_GUI=OFF"
-        # following variables are automatically detected in environment after 9.6.0
-        CMAKE_OPTIONS+=" -DPYQT5_ROOT_DIR=${PYQT5_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DMATPLOTLIB_ROOT_DIR=${MATPLOTLIB_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
-        CMAKE_OPTIONS+=" -DDOXYGEN_EXECUTABLE=${DOXYGEN_ROOT_DIR}/bin/doxygen"
-        CMAKE_OPTIONS+=" -DCPPUNIT_ROOT_USER=${CPPUNIT_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DHDF5_ROOT=${HDF5_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DPARAVIEW_ROOT_DIR=${PARAVIEW_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DPETSC_DIR=${PETSC_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DKERNEL_ROOT_DIR=${KERNEL_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DGUI_ROOT_DIR=${GUI_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DMEDCOUPLING_ROOT_DIR=${MEDCOUPLING_ROOT_DIR}"
-    else
-        CMAKE_OPTIONS+=" -DCOREFLOWS_WITH_GUI=ON"
-        CMAKE_OPTIONS+=" -DPACKAGESPY_ROOT_DIR=${PACKAGESPY_ROOT_DIR}"
-        #    CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_PACKAGESPY=ON"
-    fi
-    if [ -n "$SAT_HPC" ]; then
-        if [ $VERSION == "V9_6_0" ] && [ -n "$MPI_ROOT_DIR" ]; then
-            # following variable is automatically detected in environment after 9.6.0
-            CMAKE_OPTIONS+=" -DMPI_HOME=${MPI_ROOT_DIR}"
-        fi
-        CMAKE_OPTIONS+=" -DMPI_ROOT_DIR=${MPI_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_MPI=ON"
-        if [ -n "$MPI_ROOT_DIR" ]; then
-            CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
-            CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
-        fi
-        if [ -n "$MPI4PY_ROOT_DIR" ]; then
-            CMAKE_OPTIONS+=" -DMPI4PY_ROOT_DIR:PATH=${MPI4PY_ROOT_DIR}"
-        else
-            echo "WARNING: mpi4py environment variable not detected"
-        fi
-    fi
-else
-    CMAKE_OPTIONS+=" -DCOREFLOWS_WITH_GUI=OFF"
-    if [ -n "$SAT_HPC" ]; then
-        CMAKE_OPTIONS+=" -DMPI_ROOT_DIR=${MPI_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_MPI=ON"
-        if [ -n "$MPI_ROOT_DIR" ]; then
-            CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
-            CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
-        fi
-        if [ -n "$MPI4PY_ROOT_DIR" ]; then
-            CMAKE_OPTIONS+=" -DMPI4PY_ROOT_DIR:PATH=${MPI4PY_ROOT_DIR}"
-        else
-            echo "WARNING: mpi4py environment variable not detected"
-        fi
-    fi
-fi
+CMAKE_OPTIONS+=" -DPETSC_DIR=${PETSC_ROOT_DIR}"
+
+CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_MPI=${SOLVERLAB_WITH_MPI}"
+CMAKE_OPTIONS+=" -DMPI_ROOT_DIR=${MPI_ROOT_DIR}"
+CMAKE_OPTIONS+=" -DMPI4PY_ROOT_DIR:PATH=${MPI4PY_ROOT_DIR}"
+
+CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}"
+CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}"
+CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_DOCUMENTATION=${SOLVERLAB_WITH_DOCUMENTATION}"
+
+set +x
 
+echo "##########################################################################"
+echo "SOLVERLAB HPC=1"
+echo "##########################################################################"
 echo
 echo "*** cmake "$CMAKE_OPTIONS
 cmake $CMAKE_OPTIONS $SOURCE_DIR
@@ -77,22 +74,33 @@ if [ $? -ne 0 ]; then
     exit 1
 fi
 
-
 echo
 echo "*** make" $MAKE_OPTIONS
+# VERBOSE=1 make $MAKE_OPTIONS  # for debug
 make $MAKE_OPTIONS
 if [ $? -ne 0 ]; then
     echo "ERROR on make"
     exit 2
 fi
 
+if [ "${SOLVERLAB_WITH_DOCUMENTATION}" == "ON" ]; then
+  echo
+  echo "*** make doc"
+  make docCDMATH docCoreFlows
+  if [ $? -ne 0 ]; then
+      echo "ERROR on make doc"
+      exit 3
+  fi
+fi
+
 echo
-echo "*** make doc install"
-make docCDMATH docCoreFlows install
+echo "*** make install"
+make install
 if [ $? -ne 0 ]; then
     echo "ERROR on make install"
-    exit 3
+    exit 4
 fi
 
 echo
-echo "########## END"
+echo "########## END SOLVERLAB compilation"
+exit 0

diff --git a/products/compil_scripts/SOLVERLAB_cv.sh b/products/compil_scripts/SOLVERLAB_cv.sh
deleted file mode 100755 (executable)
index 4c343f7..0000000
--- a/products/compil_scripts/SOLVERLAB_cv.sh
+++ /dev/null
@@ -1,67 +0,0 @@
-#!/bin/bash
-
-echo "##########################################################################"
-echo "SOLVERLAB" $VERSION
-echo "##########################################################################"
-
-rm -rf $BUILD_DIR
-mkdir $BUILD_DIR
-cd $BUILD_DIR
-
-
-
-CMAKE_OPTIONS=
-CMAKE_OPTIONS+=" -DPython_ROOT_DIR=${PYTHON_ROOT_DIR}"
-CMAKE_OPTIONS+=" -DPython_EXECUTABLE=${PYTHONBIN}"
-CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX=${PRODUCT_INSTALL}"
-CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_TRACE=OFF"
-CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_TRACE_COLORED=OFF"
-CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_DOCUMENTATION=OFF"
-
-
-
-    #if [ -n "$SAT_HPC" ]; then
-        CMAKE_OPTIONS+=" -DMPI_ROOT_DIR=${MPI_ROOT_DIR}"
-        CMAKE_OPTIONS+=" -DSOLVERLAB_WITH_MPI=ON"
-        if [ -n "$MPI_ROOT_DIR" ]; then
-            CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
-            CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
-        fi
-        if [ -n "$MPI4PY_ROOT_DIR" ]; then
-            CMAKE_OPTIONS+=" -DMPI4PY_ROOT_DIR:PATH=${MPI4PY_ROOT_DIR}"
-        else
-            echo "WARNING: mpi4py environment variable not detected"
-            CMAKE_OPTIONS+=" -DMPI4PY_ROOT_DIR:PATH=/home/catA/wambeke/.local/lib/python3.9/site-packages"
-            # "/export/home/catA/wambeke/SALOME_9_11/SALOME-9.11.0-native-FD34/INSTALL/ParaView/lib/python3.9/site-packages/mpi4py"
-        fi
-    #fi
-
-export MPI4PY_ROOT_DIR="/home/catA/wambeke/.local/lib/python3.9/site-packages"
-
-echo
-echo "*** cmake "$CMAKE_OPTIONS
-cmake $CMAKE_OPTIONS $SOURCE_DIR
-if [ $? -ne 0 ]; then
-    echo "ERROR on cmake"
-    exit 1
-fi
-
-
-echo
-echo "*** make" $MAKE_OPTIONS
-make $MAKE_OPTIONS
-if [ $? -ne 0 ]; then
-    echo "ERROR on make"
-    exit 2
-fi
-
-echo
-echo "*** make doc install"
-make docCDMATH docCoreFlows install
-if [ $? -ne 0 ]; then
-    echo "ERROR on make install"
-    exit 3
-fi
-
-echo
-echo "########## END"

diff --git a/products/compil_scripts/petsc-3.16.0.sh b/products/compil_scripts/petsc-3.16.0.sh
index 6d066cbe20a7b11aab0ea7840acbf8343a61070e..72b451d1c5ce3ff0450371cf13d41ea56454cfff 100755 (executable)
--- a/products/compil_scripts/petsc-3.16.0.sh
+++ b/products/compil_scripts/petsc-3.16.0.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 
 echo "##########################################################################"
-echo "Petsc" $VERSION
+echo "Petsc ${VERSION} HPC=${SAT_HPC}"
 echo "##########################################################################"
 
 cp -r $SOURCE_DIR/* .
@@ -14,6 +14,9 @@ CONFIGURE_FLAGS+=" --download-metis=ext/metis-5.1.0-p10.tar.gz"
 CONFIGURE_FLAGS+=" --with-debugging=0" # by default Petsc is build in debug mode
 CONFIGURE_FLAGS+=" --with-petsc4py=yes"
 CONFIGURE_FLAGS+=" --download-slepc-configure-arguments=--with-slepc4py=yes "
+
+# CONFIGURE_FLAGS+=" --with-med=yes --download-med=ext/" # TODO cvw
+
 echo
 if [ -n "${SAT_HPC}" ]
 then