]> SALOME platform Git repositories - tools/sat_salome.git/commitdiff
Salome HOME
openTURNS final patches before merging to master
authorNabil Ghodbane <nabil.ghodbane@cea.fr>
Tue, 21 Sep 2021 12:16:02 +0000 (14:16 +0200)
committerNabil Ghodbane <nabil.ghodbane@cea.fr>
Tue, 21 Sep 2021 12:16:02 +0000 (14:16 +0200)
13 files changed:
applications/SALOME-master.pyconf
products/ParaView.pyconf
products/cminpack.pyconf
products/compil_scripts/ParaView-5.9.0.sh
products/compil_scripts/cminpack-1.3.6.sh [new file with mode: 0755]
products/compil_scripts/openturns-1.16.sh
products/compil_scripts/openturns-1.17.sh [new file with mode: 0755]
products/env_scripts/cminpack.py
products/env_scripts/openturns.py
products/openturns.pyconf
products/patches/openturns-1.16.0001.patch
products/patches/openturns-1.16.0002.patch
products/patches/openturns-1.17.0001.patch [new file with mode: 0644]

index 3e58f3014e08b7e9e867baf86f5d63d87e2ac8ab..210c3c7f8ee7d13d32b4daec6db55e3a7462bd57 100644 (file)
@@ -72,7 +72,7 @@ APPLICATION :
         omniORB : '4.2.2'
         omniORBpy : '4.2.2'
         opencv : '3.2.0'
-        openturns: '1.16'
+        openturns: '1.17'
         openVKL: '0.11.0'
         ospray : '2.4.0'
         packaging : '17.1'
index 70f4d37ed63841f6375eb3d9b035fcb802d8c414..802afaf01857db66e11e919e41304eb93bf5745b 100755 (executable)
@@ -19,7 +19,7 @@ default :
               'cgns',
               'Pygments'
               ]
-    opt_depend : ['openmpi', 'ospray','tbb']
+    opt_depend : ['openmpi', 'ospray','tbb', 'openturns']
     build_depend : ["cmake"]
     source_dir : $APPLICATION.workdir + $VARS.sep + 'SOURCES' + $VARS.sep + $name
     build_dir : $APPLICATION.workdir + $VARS.sep + 'BUILD' + $VARS.sep + $name
index 2fbca76cb6d139a40c7708b20cfb8d505f7db808..c0344db15142865a3a2e94f2a5e84a5785181aa8 100644 (file)
@@ -2,7 +2,7 @@ default :
 {
     name : "cminpack"
     build_source : "cmake"
-    cmake_options : " -DUSE_BLAS=ON -DUSE_FPIC=ON -DBUILD_SHARED_LIBS=ON"
+    cmake_options : " -DUSE_BLAS=ON -DUSE_FPIC=ON -DBUILD_SHARED_LIBS=ON  -DCMAKE_INSTALL_LIBDIR:STRING=lib "
     compil_script :  $name + $VARS.scriptExtension
     get_source : "archive"
     environ :
@@ -25,5 +25,7 @@ default :
 
 version_1_3_6 :
 {
+    build_source : "script"
+    compil_script: 'cminpack-1.3.6.sh'
     patches : ['cminpack-1.3.6-cblas.patch']
 }
\ No newline at end of file
index 21389556992435eaf32a2726ad17147584c92dcf..07a48f336a897b7eecd217cadc1124f8370c6fc5 100755 (executable)
@@ -157,7 +157,11 @@ CMAKE_OPTIONS="${CMAKE_OPTIONS} -DVTK_MODULE_USE_EXTERNAL_VTK_hdf5:BOOL=ON"
 CMAKE_OPTIONS="${CMAKE_OPTIONS} -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
 CMAKE_OPTIONS="${CMAKE_OPTIONS} -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
 CMAKE_OPTIONS="${CMAKE_OPTIONS} -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
-
+CMAKE_OPTIONS="${CMAKE_OPTIONS} -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
+CMAKE_OPTIONS="${CMAKE_OPTIONS} -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
+CMAKE_OPTIONS="${CMAKE_OPTIONS} -DHDF5_hdf5_CXX_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_cxx.so"
+CMAKE_OPTIONS="${CMAKE_OPTIONS} -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
+CMAKE_OPTIONS="${CMAKE_OPTIONS} -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
 ### CGNS
 CMAKE_OPTIONS="${CMAKE_OPTIONS} -DVTK_MODULE_USE_EXTERNAL_ParaView_cgns:BOOL=ON"
 if [ "$CGNS_ROOT_DIR" != "/usr" ]
@@ -213,12 +217,19 @@ CMAKE_OPTIONS="${CMAKE_OPTIONS} -DPARAVIEW_PLUGIN_ENABLE_pvblot:BOOL=OFF"
 CMAKE_OPTIONS="${CMAKE_OPTIONS} -DVTK_ALL_NEW_OBJECT_FACTORY:BOOL=ON"
 
 # Openturns:
-if [-n "$OPENTURNS_ROOT_DIR" ]
-then
-    echo "INFO: Adding OpenTurns support..."
-    CMAKE_OPTIONS="${CMAKE_OPTIONS} -DPARAVIEW_ENABLE_OPENTURNS=ON"
-    CMAKE_OPTIONS="${CMAKE_OPTIONS} -DOpenTURNS_DIR=$OPENTURNS_ROOT_DIR/cmake/openturns"
+if [ -n "$OPENTURNS_VERSION" ]; then
+    function version_ge() { test "$(echo "$@" | tr " " "\n" | sort -rV | head -n 1)" == "$1"; }
+    if version_ge $OPENTURNS_VERSION "1.17" ; then
+        echo "INFO: Adding OpenTURNS version ${OPENTURNS_VERSION} support..."
+        CMAKE_OPTIONS="${CMAKE_OPTIONS} -DPARAVIEW_ENABLE_OPENTURNS=ON"
+        CMAKE_OPTIONS="${CMAKE_OPTIONS} -DOpenTURNS_DIR=$OPENTURNS_ROOT_DIR/lib/cmake/openturns"
+    else
+        echo "WARNING: OpenTURNS ${OPENTURNS_VERSON} is not supported with current ParaView build..."
+    fi
+else
+    echo "WARNING: No OpenTURNS environment variable is found..."
 fi
+
 echo
 echo "*** cmake" ${CMAKE_OPTIONS}
 cmake ${CMAKE_OPTIONS} $SOURCE_DIR
diff --git a/products/compil_scripts/cminpack-1.3.6.sh b/products/compil_scripts/cminpack-1.3.6.sh
new file mode 100755 (executable)
index 0000000..773de2f
--- /dev/null
@@ -0,0 +1,60 @@
+#!/bin/bash                                                                                                                                                                              
+
+echo "##########################################################################"
+echo "Cminpack " $VERSION
+echo "##########################################################################"
+
+if [ -n "$MPI_ROOT_DIR" ]
+then
+    echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
+    export CC=${MPI_ROOT_DIR}/bin/mpicc
+    export CXX=${MPI_ROOT_DIR}/bin/mpicxx
+fi
+
+CMAKE_OPTIONS=""
+CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
+CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
+CMAKE_OPTIONS+=" -DUSE_BLAS=ON"
+CMAKE_OPTIONS+=" -DUSE_FPIC=ON"
+CMAKE_OPTIONS+=" -DBUILD_EXAMPLES=OFF"
+###CMAKE_OPTIONS+=" -DBUILD_SHARED_LIBS=ON"
+CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
+
+echo
+echo "*** cmake" $CMAKE_OPTIONS
+cmake $CMAKE_OPTIONS $SOURCE_DIR
+if [ $? -ne 0 ]
+then
+    echo "ERROR on cmake"
+    exit 1
+fi
+
+echo
+echo "*** make" $MAKE_OPTIONS
+make $MAKE_OPTIONS
+if [ $? -ne 0 ]
+then
+    echo "ERROR on make"
+    exit 2
+fi
+
+echo
+echo "*** make install"
+make install
+if [ $? -ne 0 ]
+then
+    echo "ERROR on make install"
+    exit 3
+fi
+
+echo
+echo "*** check installation"
+
+if [ -d "${PRODUCT_INSTALL}/lib64" ]
+then
+    echo "WARNING: renaming lib64 to lib..."
+    mv ${PRODUCT_INSTALL}/lib64 ${PRODUCT_INSTALL}/lib
+fi
+
+echo
+echo "########## END"
index 65e81fb91236da0d5bd49c07fa6d00c5c3fe20e8..927bcc9418f0afbde0760b55d7a23a64df7082a2 100755 (executable)
@@ -4,8 +4,6 @@ echo "##########################################################################
 echo "openturns" $VERSION
 echo "##########################################################################"
 
-COPY_OPENTURNS=0
-
 if [ -n "$MPI_ROOT_DIR" ]
 then
     echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
@@ -13,147 +11,37 @@ then
     export CXX=${MPI_ROOT_DIR}/bin/mpicxx
 fi
 
-if [ $COPY_OPENTURNS -ne 1 ]; then
-    CMAKE_OPTIONS=""
-    CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
-    CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
-    CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
-    CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
-
-    echo
-    echo "*** cmake" $CMAKE_OPTIONS
-    cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.16
-    if [ $? -ne 0 ]
-    then
-       echo "ERROR on cmake"
-       exit 1
-    fi
-    
-    echo
-    echo "*** make" $MAKE_OPTIONS
-    make $MAKE_OPTIONS
-    if [ $? -ne 0 ]
-    then
-       echo "ERROR on make"
-       exit 2
-    fi
-    
-    echo
-    echo "*** make install"
-    make install
-    if [ $? -ne 0 ]
-    then
-       echo "ERROR on make install"
-       exit 3
-    fi
-
-    echo
-    echo "*** check installation"
-
-    if [ -d "${PRODUCT_INSTALL}/lib64" ]
-    then
-       mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
-       rmdir ${PRODUCT_INSTALL}/lib64
-    fi
-
-    export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
-    export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
-    chmod +x ${SOURCE_DIR}/openturns-1.16/python/test/t_features.py
-    ${SOURCE_DIR}/openturns-1.16/python/test/t_features.py
-    if [ $? -ne 0 ]
-    then
-       echo "ERROR  testing Openturns features...."
-       exit 4
-    fi
-else
-    mkdir -p $PRODUCT_INSTALL
-    cp -r /volatile/salome/support/SPNS-24377/SALOME-master-CO7/INSTALL/openturns-1.16/* $PRODUCT_INSTALL/
-fi
-exit 0
-
 CMAKE_OPTIONS=""
 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
 CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
-CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
 
-LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
-if [[ -d "$SOURCE_DIR/otfftw-0.10" ]]; then
-    CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
-    CMAKE_OPTIONS+=" -DCMINPACK_LIBRARIES=${CMINPACK_ROOT_DIR}/lib64"
-    CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=${CMINPACK_ROOT_DIR}/lib64/libcminpack_s.a"
-    CMAKE_OPTIONS+=" -DHDF5_ROOT=${HDF5_ROOT_DIR}"
+echo
+echo "*** cmake" $CMAKE_OPTIONS
+cmake $CMAKE_OPTIONS $SOURCE_DIR
+if [ $? -ne 0 ]
+then
+    echo "ERROR on cmake"
+    exit 1
+fi
 
-    declare -A OTC
-    OTC["otagrum"]="0.3"
-    OTC["otfftw"]="0.10"
-    OTC["otmixmod"]="0.11"
-    OTC["otmorris"]="0.9"
-    OTC["otpmml"]="1.10"
-    OTC["otrobopt"]="0.8"
-    OTC["otsubsetinverse"]="1.7"
-    OTC["otsvm"]="0.9"
+echo
+echo "*** make" $MAKE_OPTIONS
+make $MAKE_OPTIONS
+if [ $? -ne 0 ]
+then
+    echo "ERROR on make"
+    exit 2
+fi
 
-    for k in ${!OTC[@]};
-    do         
-        cd  $BUILD_DIR
-        mkdir ${BUILD_DIR}/$k
-        cd ${BUILD_DIR}/$k 
-        echo
-        echo "*** C O M P O N E N T : $SOURCE_DIR/$k-${OTC[$k]} "
-        CMAKE_EXTRA_OPTIONS=
-        if [[ $k == "otmixmod" ]]; then
-            CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
-            CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
-        elif [[ $k == "otsubsetinverse" ]]; then
-            CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
-            CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
-            CMAKE_EXTRA_OPTIONS+=" DUSE_SPHINX=OFF"
-        fi
-        if [[ $k == "otmixmod" ]]; then
-            LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${BUILD_DIR}/$k/lib/src
-        else
-            LD_LIBRARY_PATH=${LD_LIBRARY_PATH_REF}
-        fi
-        echo
-        echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS}  $SOURCE_DIR/$k-${OTC[$k]}
-        cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
-        if [ $? -ne 0 ]
-        then
-            echo "ERROR on cmake"
-            exit 1
-        fi
-        
-        echo
-        echo "*** make" $MAKE_OPTIONS
-        make $MAKE_OPTIONS
-        if [ $? -ne 0 ]
-        then
-            echo "ERROR on make"
-            exit 2
-        fi
-        
-        echo
-        echo "*** make install"
-        make install
-        if [ $? -ne 0 ]
-        then
-            echo "ERROR on make install"
-            exit 3
-        fi
-    done
-    declare -A OTP
-    OTP["otfmi"]="0.7"
-    OTP["otpod"]="0.6.6"
-    OTP["otwrapy"]="0.9"
-    for k in ${!OTP[@]};
-    do 
-        cd  $BUILD_DIR
-        mkdir ${BUILD_DIR}/$k
-        cd ${BUILD_DIR}/$k
-        ${PYTHONBIN} setup.py  install --prefix==${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages
-    done
+echo
+echo "*** make install"
+make install
+if [ $? -ne 0 ]
+then
+    echo "ERROR on make install"
+    exit 3
 fi
 
 echo
@@ -167,8 +55,8 @@ fi
 
 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
-chmod +x ${SOURCE_DIR}/openturns-1.16/python/test/t_features.py
-${SOURCE_DIR}/openturns-1.16/python/test/t_features.py
+chmod +x ${SOURCE_DIR}/python/test/t_features.py
+${SOURCE_DIR}/python/test/t_features.py
 if [ $? -ne 0 ]
 then
     echo "ERROR  testing Openturns features...."
diff --git a/products/compil_scripts/openturns-1.17.sh b/products/compil_scripts/openturns-1.17.sh
new file mode 100755 (executable)
index 0000000..9d0169a
--- /dev/null
@@ -0,0 +1,233 @@
+#!/bin/bash                                                                                                                                                                              
+
+echo "##########################################################################"
+echo "openturns" $VERSION
+echo "##########################################################################"
+
+COPY_OPENTURNS=0
+# we don't install in python directory -> modify environment as described in INSTALL file
+mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION:0:3}/site-packages
+export PATH=$(pwd)/bin:$PATH
+export PYTHONPATH=$(pwd):$PYTHONPATH
+export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION:0:3}/site-packages:$PYTHONPATH
+
+if [ -n "$MPI_ROOT_DIR" ]
+then
+    echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
+    export CC=${MPI_ROOT_DIR}/bin/mpicc
+    export CXX=${MPI_ROOT_DIR}/bin/mpicxx
+fi
+
+CMAKE_OPTIONS=""
+CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
+CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
+CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
+CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
+CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
+CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
+CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
+CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
+CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
+CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
+CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
+# CMINPACK
+CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
+CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
+CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
+# Blas/Lapack
+CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
+CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
+CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
+
+### libxml2 settings
+if [ -n "$LIBXML2_ROOT_DIR" ]
+then
+    # with a native libxml2, do not use these options
+    if [ "${LIBXML2_ROOT_DIR}" != "/usr" ]
+    then
+        CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
+        CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
+        CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
+    fi
+fi
+
+echo
+echo "*** cmake" $CMAKE_OPTIONS
+mkdir -p $BUILD_DIR/openturns
+cd  $BUILD_DIR/openturns
+cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.17
+if [ $? -ne 0 ]
+then
+    echo "ERROR on cmake"
+    exit 1
+fi
+
+echo
+echo "*** make" $MAKE_OPTIONS
+make $MAKE_OPTIONS
+if [ $? -ne 0 ]
+then
+    echo "ERROR on make"
+    exit 2
+fi
+
+echo
+echo "*** make install"
+make install
+if [ $? -ne 0 ]
+then
+    echo "ERROR on make install"
+    exit 3
+fi
+
+echo
+echo "*** check installation"
+
+if [ -d "${PRODUCT_INSTALL}/lib64" ]
+then
+    mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
+    rmdir ${PRODUCT_INSTALL}/lib64
+fi
+
+export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
+export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
+chmod +x ${SOURCE_DIR}/openturns-1.17/python/test/t_features.py
+${SOURCE_DIR}/openturns-1.17/python/test/t_features.py
+if [ $? -ne 0 ]
+then
+    echo "ERROR  testing Openturns features...."
+    exit 4
+fi
+
+CMAKE_OPTIONS=""
+CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
+CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
+CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
+CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
+CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
+### HDF5 settings
+CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
+CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
+CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
+CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
+CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
+CMAKE_OPTIONS+=" -DHDF5_hdf5_CXX_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_cxx.so"
+CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
+CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
+# CMINPACK
+CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
+CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
+CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
+# Blas/Lapack
+CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
+CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
+CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
+### libxml2 settings
+if [ -n "$LIBXML2_ROOT_DIR" ]
+then
+    # with a native libxml2, do not use these options
+    if [ "${LIBXML2_ROOT_DIR}" != "/usr" ]
+    then
+        CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
+        CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
+        CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
+    fi
+fi
+
+LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
+if [[ -d "$SOURCE_DIR/otfftw-0.11" ]]; then
+
+    declare -A OTC
+    OTC["otagrum"]="0.4"
+    OTC["otfftw"]="0.11"
+    OTC["otmixmod"]="0.12"
+    OTC["otmorris"]="0.10"
+    OTC["otpmml"]="1.11"
+    OTC["otrobopt"]="0.9"
+    OTC["otsubsetinverse"]="1.8"
+    OTC["otsvm"]="0.10"
+
+    for k in ${!OTC[@]};
+    do         
+        echo
+        echo "*** C O M P O N E N T : $k-${OTC[$k]} "
+        if [[ $k == "otagrum" ]]; then
+            echo "WARNING: skipping $k.."
+            continue
+        fi
+
+        cd  $BUILD_DIR
+        mkdir ${BUILD_DIR}/$k
+        cd ${BUILD_DIR}/$k 
+        CMAKE_EXTRA_OPTIONS=
+        if [[ $k == "otmixmod" ]]; then
+            CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
+            CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
+        elif [[ $k == "otsubsetinverse" ]]; then
+            CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
+            CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
+            CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
+        elif  [[ $k == "otfftw" ]]; then
+            CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"  # needs extra latex modules on CentOS 7
+        elif  [[ $k == "otpmml" ]]; then
+            CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"  # needs extra latex modules on CentOS 7
+        fi
+
+        echo
+        echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS}  $SOURCE_DIR/$k-${OTC[$k]}
+        cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
+        if [ $? -ne 0 ]
+        then
+            echo "ERROR on cmake"
+            exit 1
+        fi
+        
+        echo
+        echo "*** make" $MAKE_OPTIONS
+        make $MAKE_OPTIONS
+        if [ $? -ne 0 ]
+        then
+            echo "ERROR on make"
+            exit 2
+        fi
+        
+        echo
+        echo "*** make install"
+        make install
+        if [ $? -ne 0 ]
+        then
+            echo "ERROR on make install"
+            exit 3
+        fi
+    done
+    declare -A OTP
+    OTP["otfmi"]="0.11"
+    #OTP["otpod"]="0.6.7"
+    OTP["otwrapy"]="0.10"
+    for k in ${!OTP[@]};
+    do 
+        echo
+        echo "*** C O M P O N E N T : $k-${OTP[$k]} "
+        cd  $BUILD_DIR
+        mkdir ${BUILD_DIR}/$k
+        cd ${BUILD_DIR}/$k
+        cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
+        #
+        $PYTHONBIN setup.py build
+        if [ $? -ne 0 ]
+        then
+            echo "ERROR on ${PYTHONBIN} setup.py  build"
+            exit 4
+        fi
+        #
+        $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
+        if [ $? -ne 0 ]
+        then
+            echo "ERROR on ${PYTHONBIN} setup.py  install --prefix=$PRODUCT_INSTALL"
+            exit 5
+        fi
+    done
+fi
+
+echo
+echo "########## END"
index a27bbce402912f9a51acbd7162fb561b46c2aada..201e8bd07c63031bb2022dcf9c1d267965a2c6fb 100644 (file)
@@ -3,6 +3,7 @@ import os.path
 
 def set_env(env, prereq_dir, version):
     env.set('CMINPACK_ROOT_DIR', prereq_dir)
+    env.set('CMINPACK_DIR', os.path.join(prereq_dir,'share','cmake','Cminpack'))
     env.prepend('PATH', os.path.join(prereq_dir,'bin'))
     env.prepend('LD_LIBRARY_PATH',os.path.join(prereq_dir, 'lib'))
 
index 3527208a37fe043c0d4b9d0eadbcafe1f23ea2a4..6a77f3fb655ee2a5fa846b615627f76da2d54afc 100644 (file)
@@ -3,10 +3,10 @@ import os.path
 
 def set_env(env, prereq_dir, version):
     env.set('OPENTURNS_ROOT_DIR', prereq_dir)
+    env.set('OPENTURNS_VERSION',version)
     env.prepend('PATH', os.path.join(prereq_dir,'bin'))
     env.prepend('LD_LIBRARY_PATH',os.path.join(prereq_dir, 'lib'))
     pyver = 'python' + env.get('PYTHON_VERSION')
     env.prepend('PYTHONPATH', os.path.join(prereq_dir, 'lib', pyver, 'site-packages'))
-
 def set_nativ_env(env):
     pass
index 83cc5036e3345fb9d4c0937e60253b9691158e58..61d9e345a286d109051cc99cdff9dd5fbda95961 100644 (file)
@@ -38,7 +38,6 @@ default_win :
 version_1_16 :
 {
     compil_script :  "openturns-1.16" + $VARS.scriptExtension
-    archive_info : {archive_name : "openturns-1.16-all.tar.gz"}
     patches : ['openturns-1.16.0001.patch','openturns-1.16.0002.patch']
 }
 
@@ -46,3 +45,15 @@ version_1_16_win :
 {
     patches : []
 }
+
+version_1_17 :
+{
+    compil_script :  "openturns-1.17" + $VARS.scriptExtension
+    patches : ['openturns-1.17.0001.patch']
+    depend : ['Python', 'lapack', 'hdf5', 'tbb', 'nlopt', 'libxml2', 'eigen', 'matplotlib', 'cminpack', 'FMILibrary', 'PyFMI']
+}
+
+version_1_17_win :
+{
+    patches : []
+}
index 6f866b1dadb53d33bc293e437d311c3b9219c47f..adfba8fad0a4f519fedfd372589da758d370a9cf 100644 (file)
@@ -1,7 +1,7 @@
-diff -Naur openturns_ref/openturns-1.16 openturns_new/openturns-1.16
-diff -Naur openturns_ref/openturns-1.16/cmake/FindNLopt.cmake openturns_new/openturns-1.16/cmake/FindNLopt.cmake
---- openturns_ref/openturns-1.16/cmake/FindNLopt.cmake 2020-11-09 14:06:44.000000000 +0100
-+++ openturns_new/openturns-1.16/cmake/FindNLopt.cmake 2021-06-01 10:23:26.144409150 +0200
+diff -Naur openturns_ref openturns_new
+diff -Naur openturns_ref/cmake/FindNLopt.cmake openturns_new/cmake/FindNLopt.cmake
+--- openturns_ref/cmake/FindNLopt.cmake        2020-11-09 14:06:44.000000000 +0100
++++ openturns_new/cmake/FindNLopt.cmake        2021-06-01 10:23:26.144409150 +0200
 @@ -11,10 +11,21 @@
  #  NLOPT_ROOT_DIR - root dir (ex. /usr/local)
  
@@ -38,9 +38,9 @@ diff -Naur openturns_ref/openturns-1.16/cmake/FindNLopt.cmake openturns_new/open
  )
  
  # set NLOPT_LIBRARIES
-diff -Naur openturns_ref/openturns-1.16/cmake/FindTBB.cmake openturns_new/openturns-1.16/cmake/FindTBB.cmake
---- openturns_ref/openturns-1.16/cmake/FindTBB.cmake   2020-11-10 13:21:21.000000000 +0100
-+++ openturns_new/openturns-1.16/cmake/FindTBB.cmake   2021-06-01 10:23:26.144409150 +0200
+diff -Naur openturns_ref/cmake/FindTBB.cmake openturns_new/cmake/FindTBB.cmake
+--- openturns_ref/cmake/FindTBB.cmake  2020-11-10 13:21:21.000000000 +0100
++++ openturns_new/cmake/FindTBB.cmake  2021-06-01 10:23:26.144409150 +0200
 @@ -27,6 +27,11 @@
  # (To distributed this file outside of CMake, substitute the full
  #  License text for the above reference.)
@@ -53,9 +53,9 @@ diff -Naur openturns_ref/openturns-1.16/cmake/FindTBB.cmake openturns_new/opentu
  find_path (TBB_INCLUDE_DIR NAMES tbb/tbb.h DOC "TBB include directory")
  
  set (TBB_INCLUDE_DIRS ${TBB_INCLUDE_DIR})
-diff -Naur openturns_ref/openturns-1.16/CMakeLists.txt openturns_new/openturns-1.16/CMakeLists.txt
---- openturns_ref/openturns-1.16/CMakeLists.txt        2020-11-18 16:33:36.000000000 +0100
-+++ openturns_new/openturns-1.16/CMakeLists.txt        2021-06-01 10:26:34.647699757 +0200
+diff -Naur openturns_ref/CMakeLists.txt openturns_new/CMakeLists.txt
+--- openturns_ref/CMakeLists.txt       2020-11-18 16:33:36.000000000 +0100
++++ openturns_new/CMakeLists.txt       2021-06-01 10:26:34.647699757 +0200
 @@ -125,6 +125,10 @@
  set (TEMPDIR ${OPENTURNS_TEMPDIR})
  
@@ -129,9 +129,9 @@ diff -Naur openturns_ref/openturns-1.16/CMakeLists.txt openturns_new/openturns-1
    if (NLopt_FOUND)
      message(STATUS "Found NLopt: ${NLopt_DIR}")
    else ()
-diff -Naur openturns_ref/openturns-1.16/lib/src/Base/Common/openturns/TBB.hxx openturns_new/openturns-1.16/lib/src/Base/Common/openturns/TBB.hxx
---- openturns_ref/openturns-1.16/lib/src/Base/Common/openturns/TBB.hxx 2020-11-10 13:21:21.000000000 +0100
-+++ openturns_new/openturns-1.16/lib/src/Base/Common/openturns/TBB.hxx 2021-06-01 10:23:26.145409141 +0200
+diff -Naur openturns_ref/lib/src/Base/Common/openturns/TBB.hxx openturns_new/lib/src/Base/Common/openturns/TBB.hxx
+--- openturns_ref/lib/src/Base/Common/openturns/TBB.hxx        2020-11-10 13:21:21.000000000 +0100
++++ openturns_new/lib/src/Base/Common/openturns/TBB.hxx        2021-06-01 10:23:26.145409141 +0200
 @@ -35,6 +35,7 @@
  #  define __TBBMALLOC_NO_IMPLICIT_LINKAGE 1
  # endif
@@ -140,9 +140,9 @@ diff -Naur openturns_ref/openturns-1.16/lib/src/Base/Common/openturns/TBB.hxx op
  #include <tbb/task_arena.h>
  #include <tbb/parallel_sort.h>
  #include <tbb/parallel_reduce.h>
-diff -Naur openturns_ref/openturns-1.16//lib/src/CMakeLists.txt openturns_new/openturns-1.16//lib/src/CMakeLists.txt
---- openturns_ref/openturns-1.16/lib/src/CMakeLists.txt         2020-11-10 13:21:21.000000000 +0100
-+++ openturns_new/openturns-1.16//lib/src/CMakeLists.txt       2021-06-01 10:23:26.144409150 +0200
+diff -Naur openturns_ref/lib/src/CMakeLists.txt openturns_new/lib/src/CMakeLists.txt
+--- openturns_ref/lib/src/CMakeLists.txt       2020-11-10 13:21:21.000000000 +0100
++++ openturns_new/lib/src/CMakeLists.txt       2021-06-01 10:23:26.144409150 +0200
 @@ -80,15 +80,15 @@
    add_dependencies (OT generate_csv_parser)
  endif ()
index e3da06afd9f0ff5f677396056107adce96ac55d1..4a95719bddb1308ee6f4dd5d4e1d107c385a4d43 100644 (file)
@@ -1,6 +1,6 @@
-diff -Naur openturns_ref/openturns-1.16/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx openturns_new/openturns-1.16/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx
---- openturns_ref/openturns-1.16/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx  2020-11-10 13:21:21.000000000 +0100
-+++ openturns_new/openturns-1.16/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx  2021-05-21 11:08:48.206212694 +0200
+diff -Naur openturns_ref/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx openturns_new/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx
+--- openturns_ref/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx 2020-11-10 13:21:21.000000000 +0100
++++ openturns_new/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx 2021-05-21 11:08:48.206212694 +0200
 @@ -24,6 +24,12 @@
  #include "openturns/PersistentObject.hxx"
  #include "openturns/CovarianceModel.hxx"
diff --git a/products/patches/openturns-1.17.0001.patch b/products/patches/openturns-1.17.0001.patch
new file mode 100644 (file)
index 0000000..7a5e14f
--- /dev/null
@@ -0,0 +1,241 @@
+diff -Naur openturns-1.17_ref/openturns-1.17/CMakeLists.txt openturns-1.17_new/openturns-1.17/CMakeLists.txt
+--- openturns-1.17_ref/openturns-1.17/CMakeLists.txt   2021-09-21 13:28:10.257960906 +0200
++++ openturns-1.17_new/openturns-1.17/CMakeLists.txt   2021-09-21 13:37:49.975423413 +0200
+@@ -133,6 +133,11 @@
+ set (CMAKE_CXX_STANDARD 11)
++SET(LAPACK_ROOT_DIR $ENV{LAPACK_ROOT_DIR})
++IF(LAPACK_ROOT_DIR)
++  LIST(APPEND CMAKE_PREFIX_PATH "${LAPACK_ROOT_DIR}")
++ENDIF(LAPACK_ROOT_DIR)
++
+ if (NOT DEFINED LAPACK_LIBRARIES)
+   find_package (LAPACK REQUIRED)
+   if (LAPACK_FOUND)
+@@ -140,6 +145,10 @@
+   endif ()
+ endif ()
+ list (APPEND OPENTURNS_PRIVATE_LIBRARIES ${LAPACK_LIBRARIES})
++IF (DEFINED CBLAS_LIBRARIES)
++  MESSAGE(STATUS "CBLAS_LIBRARIES is defined... adding to the list of libraries ${CBLAS_LIBRARIES}")
++  LIST (APPEND OPENTURNS_PRIVATE_LIBRARIES ${CBLAS_LIBRARIES})
++ENDIF()
+ if (USE_SPECTRA)
+   find_package (Spectra)
+@@ -164,7 +173,11 @@
+ endif ()
+ if (USE_TBB)
+-  find_package (TBB)
++  SET(TBB_ROOT_DIR $ENV{TBB_ROOT_DIR})
++  if(TBB_ROOT_DIR)
++    LIST(APPEND CMAKE_PREFIX_PATH "${TBB_ROOT_DIR}")
++  endif(TBB_ROOT_DIR)
++   find_package (TBB)
+ endif ()
+ if (TBB_FOUND)
+   set (OPENTURNS_HAVE_TBB_TBB_H TRUE)
+@@ -207,6 +220,10 @@
+ endif ()
+ if (USE_LIBXML2)
++  SET(LIBXML2_ROOT_DIR $ENV{LIBXLM2_ROOT_DIR})
++  if(LIBXML2_ROOT_DIR)
++    LIST(APPEND CMAKE_PREFIX_PATH "${LIBXML2_ROOT_DIR}")
++  endif(LIBXML2_ROOT_DIR)
+   find_package (LibXml2)
+ endif ()
+ if (LIBXML2_FOUND)
+@@ -216,7 +233,19 @@
+   list (APPEND OPENTURNS_PRIVATE_LIBRARIES ${LIBXML2_LIBRARIES})
+ endif ()
++SET(MPI_ROOT_DIR $ENV{MPI_ROOT_DIR} CACHE PATH "Path to the MPI.")
++IF(MPI_ROOT_DIR)
++ LIST(APPEND CMAKE_PREFIX_PATH "${MPI_ROOT_DIR}")
++ find_package(MPI)
++ list (APPEND OPENTURNS_PRIVATE_INCLUDE_DIRS ${MPI_INCLUDE_DIRS})
++ list (APPEND OPENTURNS_PRIVATE_LIBRARIES ${MPI_LIBRARIES})
++ENDIF(MPI_ROOT_DIR)
++
+ if (USE_HDF5)
++  SET(HDF5_ROOT_DIR $ENV{HDF5_ROOT_DIR} CACHE PATH "Path to the HDF5.")
++  IF(HDF5_ROOT_DIR)
++    LIST(APPEND CMAKE_PREFIX_PATH "${HDF5_ROOT_DIR}")
++  ENDIF(HDF5_ROOT_DIR)
+   find_package(HDF5 COMPONENTS CXX)
+ endif ()
+ if (HDF5_FOUND)
+@@ -237,6 +266,10 @@
+ endif ()
+ if (USE_BOOST)
++  SET(BOOST_ROOT_DIR $ENV{BOOST_ROOT_DIR} CACHE PATH "Path to the BOOST.")
++  IF(BOOST_ROOT_DIR)
++    LIST(APPEND CMAKE_PREFIX_PATH "${BOOST_ROOT_DIR}")
++  ENDIF(BOOST_ROOT_DIR)
+   find_package (Boost 1.46)
+   if (Boost_FOUND)
+     if (CMAKE_VERSION VERSION_LESS 3.15)
+@@ -272,6 +305,10 @@
+ endif ()
+ if (USE_NLOPT)
++  SET(NLOPT_ROOT_DIR $ENV{NLOPT_ROOT_DIR} CACHE PATH "Path to the NLOPT.")
++  IF(NLOPT_ROOT_DIR)
++    LIST(APPEND CMAKE_PREFIX_PATH "${NLOPT_ROOT_DIR}")
++  ENDIF(NLOPT_ROOT_DIR)
+   find_package (NLopt CONFIG QUIET)
+   if (NLopt_FOUND)
+     message(STATUS "Found NLopt: ${NLopt_DIR}")
+@@ -336,22 +373,22 @@
+ endif ()
+ if (USE_CMINPACK)
+-  find_package (CMinpack CONFIG QUIET)
+-  if (CMinpack_FOUND)
+-    if (TARGET cminpack::cminpack)
+-      message (STATUS "Found CMinpack: ${CMinpack_DIR}")
+-      set (CMINPACK_LIBRARIES cminpack::cminpack)
+-    endif ()
+-  else ()
+-    # fallback to our macro if CMinpackConfig is not provided
+-    find_package (CMinpack)
+-    set (CMinpack_FOUND ${CMINPACK_FOUND})
+-  endif ()
+-  if (CMinpack_FOUND)
+-    set (OPENTURNS_HAVE_CMINPACK TRUE)
+-    list (APPEND OPENTURNS_PRIVATE_INCLUDE_DIRS ${CMINPACK_INCLUDE_DIRS})
+-    list (APPEND OPENTURNS_PRIVATE_LIBRARIES ${CMINPACK_LIBRARIES})
+-  endif ()
++  SET(CMINPACK_ROOT_DIR $ENV{CMINPACK_ROOT_DIR} CACHE PATH "Path to the CMINPACK.")
++  IF(CMINPACK_ROOT_DIR)
++    LIST(APPEND CMAKE_PREFIX_PATH "${CMINPACK_ROOT_DIR}")
++  ENDIF(CMINPACK_ROOT_DIR)
++  find_package (CMinpack)
++  set (CMinpack_FOUND ${CMINPACK_FOUND})
++endif ()
++if (CMinpack_FOUND)
++  MESSAGE(STATUS "Found CMkinpack ...")
++  MESSAGE(STATUS "      CMINPACK_LIBRARIES is set to: ${CMINPACK_LIBRARIES}")
++  set (OPENTURNS_HAVE_CMINPACK TRUE)
++  list (APPEND OPENTURNS_PRIVATE_INCLUDE_DIRS ${CMINPACK_INCLUDE_DIRS})
++  list (APPEND OPENTURNS_PRIVATE_LIBRARIES ${CMINPACK_LIBRARIES})
++else()
++  MESSAGE(STATUS "Could not find MinPack dependency")
++  set (OPENTURNS_HAVE_CMINPACK FALSE)
+ endif ()
+ if (USE_BONMIN)
+diff -Naur openturns-1.17_ref/openturns-1.17/cmake/FindCMinpack.cmake openturns-1.17_new/openturns-1.17/cmake/FindCMinpack.cmake
+--- openturns-1.17_ref/openturns-1.17/cmake/FindCMinpack.cmake 2021-09-21 13:28:10.246960802 +0200
++++ openturns-1.17_new/openturns-1.17/cmake/FindCMinpack.cmake 2021-09-21 13:27:42.519698634 +0200
+@@ -22,14 +22,19 @@
+ # (To distributed this file outside of CMake, substitute the full
+ #  License text for the above reference.)
++SET(CMINPACK_ROOT_DIR $ENV{CMINPACK_ROOT_DIR})
++if(CMINPACK_ROOT_DIR)
++ LIST(APPEND CMAKE_PREFIX_PATH "${CMINPACK_ROOT_DIR}")
++endif(CMINPACK_ROOT_DIR)
+ find_path (CMINPACK_INCLUDE_DIR cminpack.h
+   PATH_SUFFIXES cminpack cminpack-1
+ )
+ find_library (CMINPACK_LIBRARY
+   NAMES cminpack cminpack_s
++  HINTS ${CMINPACK_ROOT_DIR}/include
++  DOC   "CMINPACK include directory"
+ )
+-
+ set (CMINPACK_LIBRARIES ${CMINPACK_LIBRARY})
+ set (CMINPACK_INCLUDE_DIRS ${CMINPACK_INCLUDE_DIR})
+diff -Naur openturns-1.17_ref/openturns-1.17/cmake/FindNLopt.cmake openturns-1.17_new/openturns-1.17/cmake/FindNLopt.cmake
+--- openturns-1.17_ref/openturns-1.17/cmake/FindNLopt.cmake    2021-09-21 13:28:10.247960811 +0200
++++ openturns-1.17_new/openturns-1.17/cmake/FindNLopt.cmake    2021-09-21 13:27:42.520698643 +0200
+@@ -11,8 +11,19 @@
+ #  NLOPT_ROOT_DIR - root dir (ex. /usr/local)
+ # set NLOPT_INCLUDE_DIR
++SET(NLOPT_ROOT_DIR $ENV{NLOPT_ROOT_DIR})
++
++IF(NLOPT_ROOT_DIR)
++  LIST(APPEND CMAKE_PREFIX_PATH "${NLOPT_ROOT_DIR}")
++  LIST(APPEND CMAKE_PREFIX_PATH "${NLOPT_ROOT_DIR}/include")
++  LIST(APPEND CMAKE_PREFIX_PATH "${NLOPT_ROOT_DIR}/lib")
++ELSE(NLOPT_ROOT_DIR)
++  MESSAGE(FATAL_ERROR "PLEASE SET ENVIRONMENT VARIABLE NLOPT_ROOT_DIR")
++ENDIF(NLOPT_ROOT_DIR)
++
+ find_path (NLOPT_INCLUDE_DIR
+   NAMES nlopt.hpp
++  HINTS ${NLOPT_ROOT_DIR}/include
+   DOC
+     "Nlopt include directory"
+ )
+@@ -22,7 +33,8 @@
+ # set NLOPT_LIBRARY
+ find_library (NLOPT_LIBRARY
+-  NAMES nlopt_cxx nlopt
++  NAMES nlopt
++  HINTS ${NLOPT_ROOT_DIR}/lib 
+   DOC
+     "Nlopt library location"
+ )
+diff -Naur openturns-1.17_ref/openturns-1.17/cmake/FindTBB.cmake openturns-1.17_new/openturns-1.17/cmake/FindTBB.cmake
+--- openturns-1.17_ref/openturns-1.17/cmake/FindTBB.cmake      2021-09-21 13:28:10.242960764 +0200
++++ openturns-1.17_new/openturns-1.17/cmake/FindTBB.cmake      2021-09-21 13:27:42.514698586 +0200
+@@ -27,6 +27,11 @@
+ # (To distributed this file outside of CMake, substitute the full
+ #  License text for the above reference.)
++SET(TBB_ROOT_DIR $ENV{TBB_ROOT_DIR})
++IF(TBB_ROOT_DIR)
++  LIST(APPEND CMAKE_PREFIX_PATH "${TBB_ROOT_DIR}")
++ENDIF(TBB_ROOT_DIR)
++
+ find_path (TBB_INCLUDE_DIR NAMES tbb/tbb.h DOC "TBB include directory")
+ set (TBB_INCLUDE_DIRS ${TBB_INCLUDE_DIR})
+diff -Naur openturns-1.17_ref/openturns-1.17/lib/src/CMakeLists.txt openturns-1.17_new/openturns-1.17/lib/src/CMakeLists.txt
+--- openturns-1.17_ref/openturns-1.17/lib/src/CMakeLists.txt   2021-09-21 13:27:57.412839452 +0200
++++ openturns-1.17_new/openturns-1.17/lib/src/CMakeLists.txt   2021-09-21 13:27:14.134430243 +0200
+@@ -124,5 +124,5 @@
+ if (UNIX AND BUILD_SHARED_LIBS)
+   set (OT_GDB_PY ${CMAKE_SHARED_LIBRARY_PREFIX}OT${CMAKE_SHARED_LIBRARY_SUFFIX}.${LIB_VERSION}-gdb.py)
+   execute_process (COMMAND ${CMAKE_COMMAND} -E create_symlink ${CMAKE_CURRENT_SOURCE_DIR}/libOT-gdb.py ${CMAKE_CURRENT_BINARY_DIR}/${OT_GDB_PY})
+-  install (FILES libOT-gdb.py DESTINATION ${OPENTURNS_DATA_PATH}/gdb/auto-load/${LIBRARY_PATH} RENAME ${OT_GDB_PY})
++  install (FILES libOT-gdb.py DESTINATION ${OPENTURNS_DATA_PATH}/gdb/auto-load RENAME ${OT_GDB_PY})
+ endif ()
+diff -Naur openturns-1.17_ref/openturns-1.17/lib/src/Base/Common/openturns/TBB.hxx openturns-1.17_new/openturns-1.17/lib/src/Base/Common/openturns/TBB.hxx
+--- openturns-1.17_ref/openturns-1.17/lib/src/Base/Common/openturns/TBB.hxx    2021-09-21 13:27:54.484811767 +0200
++++ openturns-1.17_new/openturns-1.17/lib/src/Base/Common/openturns/TBB.hxx    2021-09-21 13:27:12.704416722 +0200
+@@ -35,6 +35,7 @@
+ #  define __TBBMALLOC_NO_IMPLICIT_LINKAGE 1
+ # endif
+ #endif
++#define TBB_PREVIEW_TASK_ARENA 1
+ #include <tbb/task_arena.h>
+ #include <tbb/parallel_sort.h>
+ #include <tbb/parallel_reduce.h>
+diff -Naur openturns-1.17_ref/openturns-1.17/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx openturns-1.17_new/openturns-1.17/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx
+--- openturns-1.17_ref/openturns-1.17/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx     2021-09-21 13:27:55.324819709 +0200
++++ openturns-1.17_new/openturns-1.17/lib/src/Base/Algo/openturns/KarhunenLoeveAlgorithmImplementation.hxx     2021-09-21 13:27:13.048419975 +0200
+@@ -24,6 +24,13 @@
+ #include "openturns/PersistentObject.hxx"
+ #include "openturns/CovarianceModel.hxx"
+ #include "openturns/KarhunenLoeveResult.hxx"
++#ifdef __GNUC__
++#  include <features.h>
++#  if __GNUC_PREREQ(11,0)
++#     include <limits>
++#  endif
++#endif // __GNUC__
++
+ BEGIN_NAMESPACE_OPENTURNS