--- /dev/null
+# Compiled Object files
+*.slo
+*.lo
+*.o
+*.pyc
+
+# Compiled Dynamic libraries
+*.so
+*.dylib
+
+# Compiled Static libraries
+*.lai
+*.la
+*.a
+
+# Temporary files
+*~
+
+# Automatically generated documentation files
+*.map
+
+# Eclipse files
+.cproject
+.project
+.settings/*
+++ /dev/null
-# Compiled Object files
-*.slo
-*.lo
-*.o
-*.pyc
-
-# Compiled Dynamic libraries
-*.so
-*.dylib
-
-# Compiled Static libraries
-*.lai
-*.la
-*.a
-
-# Temporary files
-*~
-
-# Automatically generated documentation files
-doc/*
-pre_requis/MEDFile/doc/*
-*.map
-
-# Eclipse files
-.cproject
-.project
-.settings/*
include(ExternalProject)#For PETSc, MED and MEDCoupling
# Project options
-option (CDMATH_WITH_PETSC "Compile CDMATH with PETSc linking." OFF)
-option (CDMATH_WITH_DOCUMENTATION "Generate documentation with doxygen." OFF)
-option (CDMATH_WITH_PYTHON "Compile Python interface for CDMATH." OFF)
-option (CDMATH_WITH_POSTPRO "Install postprocessing Python modules." OFF)
+option (CDMATH_WITH_PETSC "Compile CDMATH with PETSc linking." ON)
+option (CDMATH_WITH_DOCUMENTATION "Generate documentation with doxygen." ON)
+option (CDMATH_WITH_PYTHON "Compile Python interface for CDMATH." ON)
+option (CDMATH_WITH_POSTPRO "Install postprocessing Python modules." ON)
option (CDMATH_WITH_PACKAGE "Generate RPM, Debian and tarball packages." OFF)
-option (CDMATH_WITH_TESTS "Compile unit testing." OFF)
+option (CDMATH_WITH_TESTS "Compile unit testing." ON)
#Path to installed libraries
set (PETSC_DIR OFF CACHE STRING "PETSc library path" )
set (MEDCOUPLING_ROOT_DIR OFF CACHE STRING "MEDCoupling library path" )
#url of tarball librairies
-set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.13.2.tar.gz
+set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.13.tar.gz
CACHE STRING "PETSc tarball path/url" )
-set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.13.2.tar.gz
+set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.13.4.tar.gz
CACHE STRING "SLEPC tarball path/url" )
set (DOWNLOAD_F2CBLASLAPACK ${CDMATH_SOURCE_DIR}/pre_requis/PETSc/f2cblaslapack-3.4.2.q4.tar.gz
CACHE STRING "F2CBLASLAPACK tarball path/url" )
set (DOWNLOAD_HDF5 ${CDMATH_SOURCE_DIR}/pre_requis/PETSc/hdf5-1.10.3.tar.gz
CACHE STRING "HDF5 tarball path/url" )
-set (DOWNLOAD_MED http://files.salome-platform.org/Salome/other/med-4.0.0.tar.gz
+set (DOWNLOAD_MED http://files.salome-platform.org/Salome/other/med-4.1.0.tar.gz
CACHE STRING "MED tarball path/url")
set (DOWNLOAD_MEDCOUPLING http://files.salome-platform.org/Salome/other/medCoupling-9.4.0.tar.gz
CACHE STRING "MEDCoupling tarball path/url" )
set (CDMATH_POSTPRO_DIR ${CDMATH_SOURCE_DIR}/postprocessing)
set (TESTS_DIR ${CDMATH_SOURCE_DIR}/tests)
-list (APPEND CMAKE_MODULE_PATH "${CDMATH_SOURCE_DIR}/cmake_files")
-# PETSc and HDF5
-if (CDMATH_WITH_PETSC OR PETSC_DIR OR DEFINED ENV{PETSC_DIR} )
+###Define CDMATH_INCLUDES and CDMATH_LIBRARIES for the compilation of CoreFlows
+set(CDMATH_INCLUDES
+ ${MEDFILE_INCLUDE_DIRS} ${MEDCOUPLING_INCLUDE_DIR}
+ ${BASE_DIR}/inc ${MESH_DIR}/inc ${LINEARSOLVER_DIR}/inc
+ PARENT_SCOPE )
- if ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR)
- if (NOT PETSC_DIR)
- set(PETSC_DIR $ENV{PETSC_DIR})
- message ( STATUS "Checking variable PETSC_DIR : " $ENV{PETSC_DIR} )
- else (NOT PETSC_DIR)
- message ( STATUS "Checking variable PETSC_DIR : " ${PETSC_DIR} )
- endif(NOT PETSC_DIR)
-
- find_package (PETSc 3.4 REQUIRED)
- petsc_get_version ()
-
- message ( STATUS "PETSc found. Version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}" )
- set(PETSC_INSTALL ${PETSC_DIR})
-
- #Define and search slepc variables
- if ( NOT SLEPC_DIR )
- if ( DEFINED ENV{SLEPC_DIR} )
- set(SLEPC_DIR $ENV{SLEPC_DIR})
- else ( DEFINED ENV{SLEPC_DIR} )
- set(SLEPC_DIR ${PETSC_DIR}/${PETSC_ARCH})
- endif( DEFINED ENV{SLEPC_DIR} )
- endif( NOT SLEPC_DIR)
-
- message ( STATUS "Checking variable SLEPC_DIR" )
- if ( IS_DIRECTORY ${SLEPC_DIR}/include AND EXISTS ${SLEPC_DIR}/lib/libslepc.so)
- set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
- set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
- message( STATUS "SLEPc found at ${SLEPC_DIR}" )
- else()
- message( FATAL_ERROR "SLEPc not found at ${SLEPC_DIR}" )
- endif()
-
- #define hdf5 variables
- if ( NOT HDF5_ROOT )#hdf5 is not defined in cmake arguments
- if ( DEFINED ENV{HDF5_ROOT} )#hdf5 is defined in the environment
- set(HDF5_ROOT $ENV{HDF5_ROOT})
- else( DEFINED ENV{HDF5_ROOT} )#hdf5 is not defined in the environment
- #HDF5 to be found in petsc external packages
- set(HDF5_ROOT ${PETSC_DIR}/${PETSC_ARCH})# define hint for hdf5/med installation in petsc external packages
- endif( DEFINED ENV{HDF5_ROOT} )
- endif( NOT HDF5_ROOT )
- set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
- set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
- else ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR )
- message ( STATUS "PETSC_DIR not set, searching PETSc and SLEPc in the system" )
-
- if ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" ) #Case fedora/redhat system install
- message ( STATUS "PETSC includes found in /usr/include/petsc/" )
- message ( STATUS "PETSC library found in /usr/lib64" )
- set(PETSC_DIR /usr/)
- set(PETSC_INCLUDES /usr/include/petsc /usr/include/petsc/petsc/mpiuni)
- set(PETSC_LIBRARIES /usr/lib64/libpetsc.so)
-
- set(PETSC_VERSION "3.8") #3.8 for fedora 26 , 3.9 for fedora 29 , 3.10 for fedora 30, , 3.12 for fedora 32
-
- set(CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, petsc-devel (>= 3.4)") # This is not fully working yet.
- set(PETSC_INSTALL ${PETSC_DIR})
-
- #Define and search slepc variables
- if ( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
- message( STATUS "SLEPc includes found in /usr/include/slepc/" )
- message( STATUS "SLEPc library found in /usr/lib64/slepc/" )
- set(SLEPC_DIR /usr/)
- set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
- set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
- set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, slepc-devel (>= 3.4)") # This is not fully working yet.
- else ( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
- message( FATAL_ERROR "SLEPc not found in the system" )
- endif( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
-
- #HDF5 to be found in the system
- if ( NOT HDF5_ROOT AND NOT DEFINED ENV{HDF5_ROOT} )#hdf5 is not defined in the environment
- find_package(HDF5 REQUIRED)
- set(CPACK_DEBIAN_PACKAGE_DEPENDS "libhdf5-dev")
- set(CPACK_RPM_PACKAGE_REQUIRES "hdf5-devel")
- endif( NOT HDF5_ROOT AND NOT DEFINED ENV{HDF5_ROOT} )
-
-
- #elseif ( IS_DIRECTORY "/usr/lib/petsc/include" AND EXISTS "/usr/lib/petsc/lib/libpetsc_real.so" ) #Case ubuntu/debian system install
- # message ( STATUS "PETSc includes found in /usr/lib/petsc/include")
- # message ( STATUS "PETSc library found in /usr/lib/petsc/lib/libpetsc_real.so")
- # set(PETSC_DIR /usr/lib/petsc/)
- # set(PETSC_INCLUDES ${PETSC_DIR}/include ${PETSC_DIR}/include/petsc/mpiuni)
- # set(PETSC_LIBRARIES ${PETSC_DIR}/lib/libpetsc_real.so)
-
- # find_package (PETSc 3.4 REQUIRED)
- # petsc_get_version ()
- # set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, petsc-dev (>= 3.4)") # This is not fully working yet.
-
- # Define and search slepc variables
- # if ( IS_DIRECTORY "/usr/lib/slepc/include" AND EXISTS "/usr/lib/slepc/lib/libslepc_real.so" )
- # message( STATUS "SLEPc includes found in /usr/lib/slepc/include" )
- # message( STATUS "SLEPc library found in /usr/lib/slepc/lib/libslepc_real.so" )
- # set(SLEPC_DIR /usr/lib/slepc/)
- # set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
- # set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc_real.so)
- # set (CPACK_DEBIAN_PACKAGE_REQUIRES "${CPACK_DEBIAN_PACKAGE_REQUIRES}, slepc-devel (>= 3.4)") # This is not fully working yet.
- # else ( IS_DIRECTORY "/usr/lib/slepc/include" AND EXISTS "/usr/lib/slepc/lib/libslepc_real.so" )
- # message( FATAL_ERROR "SLEPc not found in the system" )
- # endif( IS_DIRECTORY "/usr/lib/slepc/include" AND EXISTS "/usr/lib/slepc/lib/libslepc_real.so" )
-
- #elseif ( IS_DIRECTORY "/usr/local/lib/python2.7/dist-packages/petsc") #Case ubuntu/debian system pip install
-
- else ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" ) # No petsc in system, do compile petsc along with slepc as an external package
- message (STATUS "PETSC not found in the system")
- message (STATUS "PETSC will be downloaded and compiled from ${DOWNLOAD_PETSC}" )
- message (STATUS "SLEPC will be downloaded and compiled from ${DOWNLOAD_SLEPC}" )
- message (STATUS "HDF5 will be downloaded and compiled from ${DOWNLOAD_HDF5}" )
-
- #extract tarball name
- string(LENGTH "${DOWNLOAD_PETSC}" tarball_url_length)#length of the tarball
- string(FIND "${DOWNLOAD_PETSC}" "/" start_tarball_name REVERSE )# last occurence of "/"
- MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
- MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
- string(SUBSTRING ${DOWNLOAD_PETSC} ${start_tarball_name} ${tarball_name_length} PETSC_TARBALL_NAME)
-
- set(PETSC_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${PETSC_TARBALL_NAME}) # Location of the final install
- set(PETSC_INSTALL ${CMAKE_INSTALL_PREFIX}/share/petsc)#folder to copy petsc libraries and include files
-
- ExternalProject_Add (PETSc
- URL ${DOWNLOAD_PETSC}
- SOURCE_DIR ${PETSC_DIR}
- BUILD_IN_SOURCE TRUE
- CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${PETSC_INSTALL} --with-debugging=0 --with-mpi=0 --download-f2cblaslapack=${DOWNLOAD_F2CBLASLAPACK} --with-fc=0 --download-slepc=${DOWNLOAD_SLEPC} --download-hdf5=${DOWNLOAD_HDF5}
- BUILD_COMMAND make
- TEST_COMMAND make check
- INSTALL_COMMAND make all
- INSTALL_DIR ${PETSC_DIR}
- STAMP_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis
- LOG_DOWNLOAD TRUE # Wrap download in script to log output
- LOG_UPDATE TRUE # Wrap update in script to log output
- LOG_CONFIGURE TRUE # Wrap configure in script to log output
- LOG_BUILD TRUE # Wrap build in script to log output
- LOG_TEST TRUE # Wrap test in script to log output
- LOG_INSTALL TRUE # Wrap install in script to log output
- )
-
- #file (STRINGS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
- #message( STATUS "PETSc version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}" )
- message( STATUS "PETSc, SLEPc and HDF5 will be installed at ${PETSC_INSTALL}")
-
- string(SUBSTRING ${PETSC_TARBALL_NAME} 6 ${tarball_name_length} PETSC_VERSION)
- #define slepc variables
- set(SLEPC_DIR ${PETSC_INSTALL})
- set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
- set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
-
- #define hdf5 variables
- if ( NOT HDF5_ROOT )#hdf5 is not defined in cmake arguments
- if ( DEFINED ENV{HDF5_ROOT} )#hdf5 is defined in the environment
- set(HDF5_ROOT $ENV{HDF5_ROOT})
- else( DEFINED ENV{HDF5_ROOT} )#hdf5 is not defined in the environment
- set(HDF5_ROOT ${PETSC_INSTALL})#HDF5 to be found in petsc installation
- endif( DEFINED ENV{HDF5_ROOT} )
- endif( NOT HDF5_ROOT )
- set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
- set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
-
- endif ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" )
- endif ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR )
-
- if ( ${PETSC_VERSION} VERSION_GREATER 3.5 )
- add_definitions(-DPETSC_VERSION_GREATER_3_5)
- endif( ${PETSC_VERSION} VERSION_GREATER 3.5 )
-string(REPLACE ";" ":" PETSC_INCLUDES_INSTALL "${PETSC_INCLUDES}")# use colon instead of semicolon in environment file env_CDMATH.sh
-endif( CDMATH_WITH_PETSC OR PETSC_DIR OR DEFINED ENV{PETSC_DIR} )
-
-#MED
-if( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR})
-
- if ( NOT MEDFILE_ROOT_DIR )
- set(MEDFILE_ROOT_DIR $ENV{MEDFILE_ROOT_DIR} )
- endif( NOT MEDFILE_ROOT_DIR )
-
- find_package (MEDFile REQUIRED)
- message (STATUS "MEDFile found in ${MEDFILE_ROOT_DIR}")
-
-else( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR})
- #string(FIND "${HDF5_LIBRARIES}" "libhdf5.so" pos)
- #string(SUBSTRING "${HDF5_LIBRARIES}" 0 ${pos} HDF5_LIBRARY_DIR)
-
- message(STATUS "MED will be downloaded and installed from ${DOWNLOAD_MED}")
- set(MACHINE PCLINUX)
- set(MEDFILE_DEFINITIONS "-D${MACHINE} -DMEDFILE_INSTALL_DOC=OFF")#Comment ne pas compiler la doc ?
- set(MEDFILE_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/med) # Location of the final install
-
- #extraction of the tarball archive name
- string(LENGTH "${DOWNLOAD_MED}" tarball_url_length)#length of the name of the tarball
- string(FIND "${DOWNLOAD_MED}" "/" start_tarball_name REVERSE )# last occurence of "/"
- MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
- MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
- string(SUBSTRING ${DOWNLOAD_MED} ${start_tarball_name} ${tarball_name_length} MED_TARBALL_NAME)
-
- ExternalProject_Add (MED
- URL ${DOWNLOAD_MED} #location of med tarball
- SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MED_TARBALL_NAME}
- BUILD_IN_SOURCE TRUE
- CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${MEDFILE_ROOT_DIR} --with-hdf5=${HDF5_ROOT} --with-hdf5-include=${HDF5_ROOT}/include --with-hdf5-lib=${HDF5_LIBRARY_DIR} --with-hdf5-bin=${HDF5_ROOT}/bin --with-swig=yes
- BUILD_COMMAND make
- INSTALL_COMMAND make install
- INSTALL_DIR ${MEDFILE_ROOT_DIR}
- STAMP_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis
- LOG_DOWNLOAD TRUE # Wrap download in script to log output
- LOG_UPDATE TRUE # Wrap update in script to log output
- LOG_CONFIGURE TRUE # Wrap configure in script to log output
- LOG_BUILD TRUE # Wrap build in script to log output
- LOG_TEST TRUE # Wrap test in script to log output
- LOG_INSTALL TRUE # Wrap install in script to log output
- )
-
- set(MEDFILE_INCLUDE_DIRS ${MEDFILE_ROOT_DIR}/include)# Nécessaire pour le medloader et les sous-dossiers mesh, et IJKMesh
- set(MEDFILE_C_LIBRARIES med medC)# Nécessaire pour le medloader
-
-endif( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR})
-
-add_library(med SHARED IMPORTED)
-set_property(TARGET med PROPERTY IMPORTED_LOCATION ${MEDFILE_ROOT_DIR}/lib/libmed.so)
-add_library(medC SHARED IMPORTED)
-set_property(TARGET medC PROPERTY IMPORTED_LOCATION ${MEDFILE_ROOT_DIR}/lib/libmedC.so)
-
-#MEDCoupling
-if( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
-
- if( NOT MEDCOUPLING_ROOT_DIR )
- set(MEDCOUPLING_ROOT_DIR $ENV{MEDCOUPLING_ROOT_DIR} )
- endif( NOT MEDCOUPLING_ROOT_DIR )
-
- message (STATUS "Seeking MEDCoupling library in ${MEDCOUPLING_ROOT_DIR}")
-
- if( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
- message (FATAL_ERROR "MEDCoupling library not found in ${MEDCOUPLING_ROOT_DIR}")
- else( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
- message (STATUS "MEDCoupling library found in ${MEDCOUPLING_ROOT_DIR}")
- endif( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
-
-else( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
- message(STATUS "MEDCoupling will be downloaded and installed from ${DOWNLOAD_MEDCOUPLING}")
- set(MEDCOUPLING_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/medcoupling) # Location of the final install
- SET(ENV{HDF5_ROOT} ${HDF5_ROOT})#MEDCoupling install process seems to require an environment variable
-
- #extraction of the tarball archive name
- string(LENGTH "${DOWNLOAD_MEDCOUPLING}" tarball_url_length)#length of the tarball
- string(FIND "${DOWNLOAD_MEDCOUPLING}" "/" start_tarball_name REVERSE )# last occurence of "/"
- MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
- MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
- string(SUBSTRING ${DOWNLOAD_MEDCOUPLING} ${start_tarball_name} ${tarball_name_length} MEDCOUPLING_TARBALL_NAME)
- string(SUBSTRING ${MEDCOUPLING_TARBALL_NAME} 12 ${tarball_name_length} MEDCOUPLING_VERSION_NAME)
-
- message(STATUS "MEDCoupling version is ${MEDCOUPLING_VERSION_NAME}")
-
- ExternalProject_Add (MEDCoupling
- URL ${DOWNLOAD_MEDCOUPLING} #location of medcoupling tarball
- SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MEDCOUPLING_TARBALL_NAME}
-# BUILD_IN_SOURCE FALSE
- CONFIGURE_COMMAND cmake <SOURCE_DIR>/${MEDCOUPLING_TARBALL_NAME} -DCMAKE_INSTALL_PREFIX=${MEDCOUPLING_ROOT_DIR} -DCONFIGURATION_ROOT_DIR=<SOURCE_DIR>/configuration-${MEDCOUPLING_VERSION_NAME} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ENABLE_PARTITIONER=OFF -DMEDCOUPLING_PARTITIONER_METIS=OFF -DMEDCOUPLING_PARTITIONER_SCOTCH=OFF -DMEDCOUPLING_ENABLE_RENUMBER=OFF -DMEDCOUPLING_BUILD_DOC=OFF -DHDF5_ROOT_DIR=${HDF5_ROOT}
- BUILD_COMMAND make
- INSTALL_COMMAND make install
- INSTALL_DIR ${MEDCOUPLING_ROOT_DIR}
- STAMP_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis
- LOG_DOWNLOAD TRUE # Wrap download in script to log output
- LOG_UPDATE TRUE # Wrap update in script to log output
- LOG_CONFIGURE TRUE # Wrap configure in script to log output
- LOG_BUILD TRUE # Wrap build in script to log output
- LOG_TEST TRUE # Wrap test in script to log output
- LOG_INSTALL TRUE # Wrap install in script to log output
- )
-
-endif( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR} )
-
-set(MEDCOUPLING_INCLUDE_DIR ${MEDCOUPLING_ROOT_DIR}/include)
-set(MEDCOUPLING_LIBRARIES ${MEDCOUPLING_ROOT_DIR}/lib )#for environment file env_CDMATH.sh
-
-add_library(medloader SHARED IMPORTED )
-set_property(TARGET medloader PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so)
-add_library(medcoupling SHARED IMPORTED )
-set_property(TARGET medcoupling PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so)
-
-if (TARGET MED AND TARGET PETSc)
- ExternalProject_Add_StepDependencies( MED build PETSc )#PETSc doit être compilé avant MED car c'est PETSc qui compile HDF5
-endif(TARGET MED AND TARGET PETSc)
-
-if (TARGET MED AND TARGET MEDCoupling)
- ExternalProject_Add_StepDependencies( MEDCoupling build MED )#MED doit être compilé avant MEDCoupling
-endif(TARGET MED AND TARGET MEDCoupling)
-
-if (TARGET PETSc AND TARGET MEDCoupling)
- ExternalProject_Add_StepDependencies( MEDCoupling build PETSc )#PETSc doit être compilé avant MEDCoupling (car il contient hdf5)
-endif(TARGET PETSc AND TARGET MEDCoupling)
+set (CDMATH_LIBRARIES
+ medC medloader medcoupling
+ base mesh linearsolver
+ PARENT_SCOPE )
-# Paraview variables for env_CDMATH.sh
-if (CDMATH_WITH_PYTHON AND CDMATH_WITH_POSTPRO)
-#find_package(VTK)
-#find_package(ParaView)
-
- #extraction of the paraview version"
- IF ( EXISTS "/usr/include/paraview/vtkPVConfig.h" )
- file(STRINGS /usr/include/paraview/vtkPVConfig.h vtkConfig)
- ELSE ( EXISTS "/usr/include/paraview/vtkPVConfig.h" )
- message(WARNING "Could not find ParaView configuration file vtkPVConfig.h. Postprocessing won't work")
- ENDIF( EXISTS "/usr/include/paraview/vtkPVConfig.h" )
-
- FOREACH(line ${vtkConfig})
- string(FIND "${line}" "#define PARAVIEW_VERSION_FULL " pos)
- IF(NOT ${pos} EQUAL -1)
- string(LENGTH ${line} line_length)#length of the tarball
- MATH(EXPR start_pv_version "${line_length}-6")#line ends with "x.y.z", that counts for 7 characters
- string(SUBSTRING ${line} ${start_pv_version} 5 PV_VERSION)
- break()
- ENDIF(NOT ${pos} EQUAL -1)
- ENDFOREACH(line vtkConfig)
-
- message(STATUS "ParaView version is ${PV_VERSION}" )
- IF ( ${PV_VERSION} VERSION_GREATER 5.6.0 OR ${PV_VERSION} VERSION_EQUAL 5.6.0 )#Use python 3, use VERSION_GREATER_EQUAL if cmake >=3.7
- SET(PYTHON2OR3 "3")
- ELSE ( ${PV_VERSION} VERSION_GREATER 5.6.0 OR ${PV_VERSION} VERSION_EQUAL 5.6.0 )#Use python 2
- SET(PYTHON2OR3 "2")
- ENDIF( ${PV_VERSION} VERSION_GREATER 5.6.0 OR ${PV_VERSION} VERSION_EQUAL 5.6.0 )
-
- set (PV_LIB_DIR /usr/lib/python${PYTHON2OR3}.7/dist-packages/paraview/:/usr/lib64/paraview/:/usr/lib/paraview/)
- set (PV_PYTHON_DIR /usr/lib/python${PYTHON2OR3}.7/dist-packages/paraview/:/usr/lib64/paraview/site-packages/:/usr/lib64/paraview/site-packages/paraview/:/usr/lib64/paraview/site-packages/vtk/:/usr/lib64/paraview/python${PYTHON2OR3}.7/site-packages/:/usr/lib64/paraview/python${PYTHON2OR3}.7/site-packages/paraview/:/usr/lib64/paraview/python${PYTHON2OR3}.7/site-packages/vtkmodules:/usr/lib/paraview/site-packages/paraview:/usr/lib/paraview/site-packages/paraview/vtk)
-
-endif(CDMATH_WITH_PYTHON AND CDMATH_WITH_POSTPRO)
-
# Swig interface
if (CDMATH_WITH_PYTHON)
- IF (${CMAKE_VERSION} VERSION_GREATER "3.12.0")
- find_package(Python ${PYTHON2OR3} REQUIRED COMPONENTS Interpreter Development )
- SET(PYTHON_EXECUTABLE ${Python_EXECUTABLE})
- ELSE (${CMAKE_VERSION} VERSION_GREATER "3.12.0")
- find_package(PythonInterp ${PYTHON2OR3} REQUIRED )
- find_package(PythonLibs ${PYTHON2OR3} REQUIRED )
- set(Python_LIBRARIES ${PYTHON_LIBRARIES})
- set(Python_INCLUDE_DIRS ${PYTHON_INCLUDE_DIRS})
- set(Python_VERSION ${PYTHON_VERSION_STRING})
- ENDIF(${CMAKE_VERSION} VERSION_GREATER "3.12.0")
-
- message(STATUS "Python version is ${Python_VERSION}")
-
- find_package (SWIG 3.0 REQUIRED)
set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, python-dev, python-numpy, swig")
set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, python-devel, numpy, swig")
add_subdirectory (${CDMATH_SWIG_DIR})
endif(CDMATH_WITH_PYTHON)
-find_package (XDR REQUIRED)
add_subdirectory (${BASE_DIR})
add_subdirectory (${MESH_DIR})
# Documentation
if (CDMATH_WITH_DOCUMENTATION)
- find_package (Doxygen)
- set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, doxygen, graphviz, mscgen")
- set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, doxygen, graphviz, mscgen")
- if (NOT DOXYGEN_FOUND)
- message (FATAL_ERROR "Doxygen is needed to build the documentation. Please install it correctly.")
- endif(NOT DOXYGEN_FOUND)
configure_file (Doxyfile.in ${PROJECT_BINARY_DIR}/Doxyfile @ONLY IMMEDIATE)
- add_custom_target (doc COMMAND ${DOXYGEN_EXECUTABLE} ${PROJECT_BINARY_DIR}/Doxyfile
+ add_custom_target (docCDMATH COMMAND ${DOXYGEN_EXECUTABLE} ${PROJECT_BINARY_DIR}/Doxyfile
SOURCES ${PROJECT_BINARY_DIR}/Doxyfile)
if ( IS_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/doc/html)
install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/doc/html DESTINATION doc/cdmath-dev-doc)
# Tests
if (CDMATH_WITH_TESTS)
- find_package (CPPUNIT REQUIRED)
enable_testing ()
add_subdirectory (${TESTS_DIR})#contains c++ and python tests
endif(CDMATH_WITH_TESTS)
# Packaging
if (CDMATH_WITH_PACKAGE)
- include (CPackLists.txt)
+ include (${CDMATH_SOURCE_DIR}/CPackLists.txt)
endif(CDMATH_WITH_PACKAGE)
# Postprocessing
cmake_minimum_required (VERSION 2.8)
-set (CPACK_PACKAGE_NAME "cdmath")
+set (CPACK_PACKAGE_NAME "CDMATH")
set (CPACK_PACKAGE_DESCRIPTION_SUMMARY "Numerical analysis toolbox")
set (CPACK_PACKAGE_VENDOR "CEA Saclay")
-set (CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_SOURCE_DIR}/README.md")
+set (CPACK_PACKAGE_DESCRIPTION_FILE "${CDMATH_SOURCE_DIR}/README.md")
set (CPACK_PACKAGE_VERSION_MAJOR "${CDMATH_VERSION_MAJOR}")
set (CPACK_PACKAGE_VERSION_MINOR "${CDMATH_VERSION_MINOR}")
set (CPACK_PACKAGE_INSTALL_DIRECTORY cdmath)
+++ /dev/null
-##Copyright (C) johnfettig.
-##All rights reserved.
-##
-##Redistribution and use in source and binary forms, with or without modification,
-##are permitted provided that the following conditions are met:
-##
-##* Redistributions of source code must retain the above copyright notice, this
-## list of conditions and the following disclaimer.
-##
-##* Redistributions in binary form must reproduce the above copyright notice, this
-## list of conditions and the following disclaimer in the documentation and/or
-## other materials provided with the distribution.
-##
-##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-##ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-##WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
-##ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-##(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-##LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-##ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-##(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-##SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-# CorrectWindowsPaths - this module defines one macro
-#
-# CONVERT_CYGWIN_PATH( PATH )
-# This uses the command cygpath (provided by cygwin) to convert
-# unix-style paths into paths useable by cmake on windows
-
-macro (CONVERT_CYGWIN_PATH _path)
- if (WIN32)
- EXECUTE_PROCESS(COMMAND cygpath.exe -m ${${_path}}
- OUTPUT_VARIABLE ${_path})
- string (STRIP ${${_path}} ${_path})
- endif (WIN32)
-endmacro (CONVERT_CYGWIN_PATH)
-
+++ /dev/null
-##Copyright (C) arthurtalpaert.
-##All rights reserved.
-##
-##Redistribution and use in source and binary forms, with or without modification,
-##are permitted provided that the following conditions are met:
-##
-##* Redistributions of source code must retain the above copyright notice, this
-## list of conditions and the following disclaimer.
-##
-##* Redistributions in binary form must reproduce the above copyright notice, this
-## list of conditions and the following disclaimer in the documentation and/or
-## other materials provided with the distribution.
-##
-##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-##ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-##WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
-##ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-##(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-##LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-##ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-##(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-##SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-# - Try to find CDMATH
-# Once done this will define
-#
-# CDMATH_FOUND - system has CDMATH
-# CDMATH_INCLUDES - the CDMATH include directories
-# CDMATH_LIBRARIES - Link these to use CDMATH
-#
-# Usage:
-# find_package(CDMATH)
-#
-# Setting these changes the behavior of the search:
-# CDMATH_DIR - directory in which CDMATH resides
-#
-# Redistribution and use is allowed according to the terms of the BSD license.
-# For details see the accompanying COPYING-CMAKE-SCRIPTS file.
-#
-
-find_path (CDMATH_DIR include/CdmathException.hxx
- HINTS ENV CDMATH_DIR
- PATHS
- /usr
- $ENV{HOME}/cdmath
- $ENV{HOME}/workspace/cdmath_install
- DOC "CDMATH Directory")
-message (STATUS "Found CDMATH: ${CDMATH_DIR}")
-
-# Include directories
-# This sets the variable ${CDMATH_INCLUDES}.
-set(CDMATH_INCLUDES ${CDMATH_DIR}/include)
-if (NOT (IS_DIRECTORY ${CDMATH_INCLUDES}) )
- message (SEND_ERROR "CDMATH_INCLUDES can not be used, ${CDMATH_INCLUDES} does not exist.")
-endif ()
-set(MED_INCLUDES ${CDMATH_DIR}/share/med/include)
-if (NOT (IS_DIRECTORY ${MED_INCLUDES}) )
- message (SEND_ERROR "MED_INCLUDES can not be used, ${MED_INCLUDES} does not exist.")
-endif ()
-set(MEDCOUPLING_INCLUDES ${CDMATH_DIR}/share/medcoupling/include)
-if (NOT (IS_DIRECTORY ${MEDCOUPLING_INCLUDES}) )
- message (SEND_ERROR "MEDCOUPLING_INCLUDES can not be used, ${MEDCOUPLING_INCLUDES} does not exist.")
-endif ()
-
-# CDMATH libraries against which to link
-# This sets the variable ${CDMATH_LIBRARIES}.
-set(CDMATH_LIBDIR ${CDMATH_DIR}/lib)
-if ( NOT (IS_DIRECTORY ${CDMATH_LIBDIR}) )
- message (SEND_ERROR "CDMATH_LIBDIR can not be used, ${CDMATH_LIBDIR} does not exist.")
-endif ()
-find_library (CDMATHBASE_LIB NAMES base PATHS ${CDMATH_LIBDIR})
-find_library (CDMATHMESH_LIB NAMES mesh PATHS ${CDMATH_LIBDIR})
-find_library (MEDC_LIB NAMES medC PATHS ${CDMATH_DIR}/share/med/lib)
-find_library (MEDLOADER_LIB NAMES medloader PATHS ${CDMATH_DIR}/share/medcoupling/lib/)
-find_library (MEDCOUPLING_LIB NAMES medcoupling PATHS ${CDMATH_DIR}/share/medcoupling/lib/)
-#find_library (CDMATHLINEARSOLVER_LIB NAMES linearsolver PATHS ${CDMATH_LIBDIR})
-set (CDMATH_LIBRARIES
- ${MEDC_LIB}
- ${MEDLOADER_LIB}
- ${MEDCOUPLING_LIB}
- ${CDMATHBASE_LIB}
- ${CDMATHMESH_LIB}
-# ${CDMATHLINEARSOLVER_LIB}
- )
+++ /dev/null
-# Copyright (C) 2007-2012 CEA/DEN, EDF R&D, OPEN CASCADE
-#
-# Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN,
-# CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS
-#
-# This library is free software; you can redistribute it and/or
-# modify it under the terms of the GNU Lesser General Public
-# License as published by the Free Software Foundation; either
-# version 2.1 of the License.
-#
-# This library is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-# Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this library; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-#
-# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
-#
-
-# ------
-
-MESSAGE(STATUS "Check for cppunit ...")
-
-# ------
-
-IF(CPPUNIT_IS_MANDATORY STREQUAL 0)
- SET(CPPUNIT_IS_MANDATORY 0)
- SET(CPPUNIT_IS_OPTIONAL 1)
-ENDIF(CPPUNIT_IS_MANDATORY STREQUAL 0)
-IF(CPPUNIT_IS_OPTIONAL STREQUAL 0)
- SET(CPPUNIT_IS_MANDATORY 1)
- SET(CPPUNIT_IS_OPTIONAL 0)
-ENDIF(CPPUNIT_IS_OPTIONAL STREQUAL 0)
-IF(NOT CPPUNIT_IS_MANDATORY AND NOT CPPUNIT_IS_OPTIONAL)
- SET(CPPUNIT_IS_MANDATORY 0)
- SET(CPPUNIT_IS_OPTIONAL 1)
-ENDIF(NOT CPPUNIT_IS_MANDATORY AND NOT CPPUNIT_IS_OPTIONAL)
-
-# ------
-
-SET(CPPUNIT_STATUS 1)
-IF(WITHOUT_CPPUNIT OR WITH_CPPUNIT STREQUAL 0)
- SET(CPPUNIT_STATUS 0)
- MESSAGE(STATUS "cppunit disabled from command line.")
-ENDIF(WITHOUT_CPPUNIT OR WITH_CPPUNIT STREQUAL 0)
-
-# ------
-
-IF(CPPUNIT_STATUS)
- IF(WITH_CPPUNIT)
- SET(CPPUNIT_ROOT_USER ${WITH_CPPUNIT})
- ELSE(WITH_CPPUNIT)
- SET(CPPUNIT_ROOT_USER $ENV{CPPUNIT_ROOT})
- ENDIF(WITH_CPPUNIT)
-ENDIF(CPPUNIT_STATUS)
-
-# -----
-
-IF(CPPUNIT_STATUS)
- IF(CPPUNIT_ROOT_USER)
- SET(CPPUNIT_FIND_PATHS_OPTION NO_DEFAULT_PATH)
- ELSE(CPPUNIT_ROOT_USER)
- SET(CPPUNIT_FIND_PATHS_OPTION)
- ENDIF(CPPUNIT_ROOT_USER)
-ENDIF(CPPUNIT_STATUS)
-
-# -----
-
-IF(CPPUNIT_STATUS)
- IF(CPPUNIT_ROOT_USER)
- SET(CPPUNIT_INCLUDE_PATHS ${CPPUNIT_ROOT_USER} ${CPPUNIT_ROOT_USER}/include)
- ELSE(CPPUNIT_ROOT_USER)
- SET(CPPUNIT_INCLUDE_PATHS)
- ENDIF(CPPUNIT_ROOT_USER)
- SET(CPPUNIT_INCLUDE_TO_FIND cppunit/extensions/HelperMacros.h)
- FIND_PATH(CPPUNIT_INCLUDE_DIR ${CPPUNIT_INCLUDE_TO_FIND} PATHS ${CPPUNIT_INCLUDE_PATHS} ${CPPUNIT_FIND_PATHS_OPTION})
- IF(CPPUNIT_INCLUDE_DIR)
- IF(CPPUNIT_ROOT_USER)
- SET(CPPUNIT_INCLUDES -I${CPPUNIT_INCLUDE_DIR})# to be removed
- IF(${CPPUNIT_INCLUDE_DIR} STREQUAL /usr/include)
- SET(CPPUNIT_INCLUDE_DIRS)
- ELSE(${CPPUNIT_INCLUDE_DIR} STREQUAL /usr/include)
- SET(CPPUNIT_INCLUDE_DIRS ${CPPUNIT_INCLUDE_DIR})
- ENDIF(${CPPUNIT_INCLUDE_DIR} STREQUAL /usr/include)
- ENDIF(CPPUNIT_ROOT_USER)
- MESSAGE(STATUS "${CPPUNIT_INCLUDE_TO_FIND} found in ${CPPUNIT_INCLUDE_DIR}")
- ELSE(CPPUNIT_INCLUDE_DIR)
- SET(CPPUNIT_STATUS 0)
- IF(CPPUNIT_ROOT_USER)
- MESSAGE(STATUS "${CPPUNIT_INCLUDE_TO_FIND} not found in ${CPPUNIT_INCLUDE_PATHS}, check your CPPUNIT installation.")
- ELSE(CPPUNIT_ROOT_USER)
- MESSAGE(STATUS "${CPPUNIT_INCLUDE_TO_FIND} not found on system, try to use WITH_CPPUNIT option or CPPUNIT_ROOT environment variable.")
- ENDIF(CPPUNIT_ROOT_USER)
- ENDIF(CPPUNIT_INCLUDE_DIR)
-ENDIF(CPPUNIT_STATUS)
-
-# ----
-
-IF(CPPUNIT_STATUS)
- IF(CPPUNIT_ROOT_USER)
- SET(CPPUNIT_LIB_PATHS ${CPPUNIT_ROOT_USER}/lib)
- ELSE(CPPUNIT_ROOT_USER)
- SET(CPPUNIT_LIB_PATHS)
- ENDIF(CPPUNIT_ROOT_USER)
-ENDIF(CPPUNIT_STATUS)
-
-IF(CPPUNIT_STATUS)
- IF(WINDOWS)
- IF(CMAKE_BUILD_TYPE STREQUAL Debug)
- FIND_LIBRARY(CPPUNIT_LIB cppunitd_dll PATHS ${CPPUNIT_LIB_PATHS} ${CPPUNIT_FIND_PATHS_OPTION})
- ELSE(CMAKE_BUILD_TYPE STREQUAL Debug)
- FIND_LIBRARY(CPPUNIT_LIB cppunit_dll PATHS ${CPPUNIT_LIB_PATHS} ${CPPUNIT_FIND_PATHS_OPTION})
- ENDIF(CMAKE_BUILD_TYPE STREQUAL Debug)
- ELSE(WINDOWS)
- FIND_LIBRARY(CPPUNIT_LIB cppunit PATHS ${CPPUNIT_LIB_PATHS} ${CPPUNIT_FIND_PATHS_OPTION})
- ENDIF(WINDOWS)
- SET(CPPUNIT_LIBS)
- IF(CPPUNIT_LIB)
- SET(CPPUNIT_LIBS ${CPPUNIT_LIBS} ${CPPUNIT_LIB})
- MESSAGE(STATUS "cppunit lib found: ${CPPUNIT_LIB}")
- ELSE(CPPUNIT_LIB)
- SET(CPPUNIT_STATUS 0)
- IF(CPPUNIT_ROOT_USER)
- MESSAGE(STATUS "cppunit lib not found in ${CPPUNIT_LIB_PATHS}, check your CPPUNIT installation.")
- ELSE(CPPUNIT_ROOT_USER)
- MESSAGE(STATUS "cppunit lib not found on system, try to use WITH_CPPUNIT option or CPPUNIT_ROOT environment variable.")
- ENDIF(CPPUNIT_ROOT_USER)
- ENDIF(CPPUNIT_LIB)
-ENDIF(CPPUNIT_STATUS)
-
-# ----
-
-IF(CPPUNIT_STATUS)
- SET(CPPUNIT_IS_OK 1)
- SET(CPPUNIT_DEFINITIONS)
- IF(WINDOWS)
- SET(CPPUNIT_INCLUDES ${CPPUNIT_INCLUDES} -DCPPUNIT_DLL)
- SET(CPPUNIT_DEFINITIONS "-DCPPUNIT_DLL")
- ENDIF(WINDOWS)
-ELSE(CPPUNIT_STATUS)
- IF(CPPUNIT_IS_MANDATORY)
- MESSAGE(FATAL_ERROR "cppunit not found ... mandatory ... abort")
- ELSE(CPPUNIT_IS_MANDATORY)
- MESSAGE(STATUS "cppunit not found ... optional ... disabled")
- ENDIF(CPPUNIT_IS_MANDATORY)
-ENDIF(CPPUNIT_STATUS)
-
-# ------
+++ /dev/null
-# - Find MED file installation
-#
-# The following variable are set:
-# MEDFILE_INCLUDE_DIRS
-# MEDFILE_LIBRARIES
-# MEDFILE_C_LIBRARIES
-# MEDFILE_F_LIBRARIES
-#
-# The CMake (or environment) variable MEDFILE_ROOT_DIR can be set to
-# guide the detection and indicate a root directory to look into.
-#
-############################################################################
-# Copyright (C) 2007-2019 CEA/DEN, EDF R&D, OPEN CASCADE
-#
-# This library is free software; you can redistribute it and/or
-# modify it under the terms of the GNU Lesser General Public
-# License as published by the Free Software Foundation; either
-# version 2.1 of the License, or (at your option) any later version.
-#
-# This library is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-# Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this library; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-#
-# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
-#
-
-# ------
-
-MESSAGE(STATUS "Check for medfile ...")
-
-# ------
-
-SET(MEDFILE_ROOT_DIR $ENV{MEDFILE_ROOT_DIR} CACHE PATH "Path to the MEDFile.")
-IF(MEDFILE_ROOT_DIR)
- LIST(APPEND CMAKE_PREFIX_PATH "${MEDFILE_ROOT_DIR}")
-ENDIF(MEDFILE_ROOT_DIR)
-
-FIND_PATH(MEDFILE_INCLUDE_DIRS med.h)
-#FIND_PROGRAM(MDUMP mdump)
-FIND_LIBRARY(MEDFILE_C_LIBRARIES NAMES medC)
-FIND_LIBRARY(MEDFILE_F_LIBRARIES NAMES med)
-IF(MEDFILE_F_LIBRARIES)
- SET(MEDFILE_LIBRARIES ${MEDFILE_C_LIBRARIES} ${MEDFILE_F_LIBRARIES})
-ELSE(MEDFILE_F_LIBRARIES)
- SET(MEDFILE_LIBRARIES ${MEDFILE_C_LIBRARIES})
-ENDIF(MEDFILE_F_LIBRARIES)
-
-INCLUDE(FindPackageHandleStandardArgs)
-FIND_PACKAGE_HANDLE_STANDARD_ARGS(MEDFile REQUIRED_VARS MEDFILE_INCLUDE_DIRS MEDFILE_LIBRARIES)
+++ /dev/null
-# - Find the matplotlib libraries
-# This module finds IF matplotlib is installed, and sets the following variables
-# indicating where it is.
-#
-# MATPLOTLIB_FOUND - was matplotlib found
-# MATPLOTLIB_VERSION - the version of matplotlib found as a string
-# MATPLOTLIB_VERSION_MAJOR - the major version number of matplotlib
-# MATPLOTLIB_VERSION_MINOR - the minor version number of matplotlib
-# MATPLOTLIB_VERSION_PATCH - the patch version number of matplotlib
-# MATPLOTLIB_PATH_DIRS - path to the matplotlib include files
-
-IF(PYTHONINTERP_FOUND)
- # Try to import matplotlib into Python interpreter. Python
- # interpreter was found previously as required package, so
- # don't take care about this.
- execute_process(COMMAND "${PYTHON_EXECUTABLE}" "-c"
- "import matplotlib as m; print(m.__version__); print(m.__path__[0]);"
- RESULT_VARIABLE _MATPLOTLIB_SEARCH_SUCCESS
- OUTPUT_VARIABLE _MATPLOTLIB_VALUES
- ERROR_VARIABLE _MATPLOTLIB_ERROR_VALUE
- OUTPUT_STRIP_TRAILING_WHITESPACE)
-
- IF(_MATPLOTLIB_SEARCH_SUCCESS MATCHES 0)
- set(MATPLOTLIB_FOUND TRUE)
-
- # Convert the process output into a list
- string(REGEX REPLACE ";" "\\\\;" _MATPLOTLIB_VALUES ${_MATPLOTLIB_VALUES})
- string(REGEX REPLACE "\n" ";" _MATPLOTLIB_VALUES ${_MATPLOTLIB_VALUES})
- list(GET _MATPLOTLIB_VALUES 0 MATPLOTLIB_VERSION)
- list(GET _MATPLOTLIB_VALUES 1 MATPLOTLIB_PATH_DIRS)
-
- # Make sure all directory separators are '/'
- string(REGEX REPLACE "\\\\" "/" MATPLOTLIB_PATH_DIRS ${MATPLOTLIB_PATH_DIRS})
-
- # Get the major and minor version numbers
- string(REGEX REPLACE "\\." ";" _MATPLOTLIB_VERSION_LIST ${MATPLOTLIB_VERSION})
- list(GET _MATPLOTLIB_VERSION_LIST 0 MATPLOTLIB_VERSION_MAJOR)
- list(GET _MATPLOTLIB_VERSION_LIST 1 MATPLOTLIB_VERSION_MINOR)
- list(GET _MATPLOTLIB_VERSION_LIST 2 MATPLOTLIB_VERSION_PATCH)
- ELSE()
- set(MATPLOTLIB_FOUND FALSE)
- ENDIF()
-ELSE()
- set(MATPLOTLIB_FOUND FALSE)
-ENDIF()
-
+++ /dev/null
-# - Try to find PETSc
-# Once done this will define
-#
-# PETSC_FOUND - system has PETSc
-# PETSC_INCLUDES - the PETSc include directories
-# PETSC_LIBRARIES - Link these to use PETSc
-# PETSC_COMPILER - Compiler used by PETSc, helpful to find a compatible MPI
-# PETSC_DEFINITIONS - Compiler switches for using PETSc
-# PETSC_MPIEXEC - Executable for running MPI programs
-# PETSC_VERSION - Version string (MAJOR.MINOR.SUBMINOR)
-#
-# Usage:
-# find_package(PETSc COMPONENTS CXX) - required if build --with-clanguage=C++ --with-c-support=0
-# find_package(PETSc COMPONENTS C) - standard behavior of checking build using a C compiler
-# find_package(PETSc) - same as above
-#
-# Setting these changes the behavior of the search
-# PETSC_DIR - directory in which PETSc resides
-# PETSC_ARCH - build architecture
-#
-# Redistribution and use is allowed according to the terms of the BSD license.
-# For details see the accompanying COPYING-CMAKE-SCRIPTS file.
-#
-
-set(PETSC_VALID_COMPONENTS
- C
- CXX)
-
-if(NOT PETSc_FIND_COMPONENTS)
- set(PETSC_LANGUAGE_BINDINGS "C")
-else()
- # Right now, this is designed for compatability with the --with-clanguage option, so
- # only allow one item in the components list.
- list(LENGTH ${PETSc_FIND_COMPONENTS} components_length)
- if(${components_length} GREATER 1)
- message(FATAL_ERROR "Only one component for PETSc is allowed to be specified")
- endif()
- # This is a stub for allowing multiple components should that time ever come. Perhaps
- # to also test Fortran bindings?
- foreach(component ${PETSc_FIND_COMPONENTS})
- list(FIND PETSC_VALID_COMPONENTS ${component} component_location)
- if(${component_location} EQUAL -1)
- message(FATAL_ERROR "\"${component}\" is not a valid PETSc component.")
- else()
- list(APPEND PETSC_LANGUAGE_BINDINGS ${component})
- endif()
- endforeach()
-endif()
-
-function (petsc_get_version)
- if (EXISTS "${PETSC_DIR}/petscversion.h" OR EXISTS "${PETSC_DIR}/include/petscversion.h" OR EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h")
- if (EXISTS "${PETSC_DIR}/include/petscversion.h")
- file (STRINGS "${PETSC_DIR}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
- elseif( EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h" )
- file (STRINGS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
- else()
- file (STRINGS "${PETSC_DIR}/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
- endif()
- foreach (line ${vstrings})
- string (REGEX REPLACE " +" ";" fields ${line}) # break line into three fields (the first is always "#define")
- list (GET fields 1 var)
- list (GET fields 2 val)
- set (${var} ${val} PARENT_SCOPE)
- set (${var} ${val}) # Also in local scope so we have access below
- endforeach ()
-
- if (PETSC_VERSION_RELEASE)
- set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}p${PETSC_VERSION_PATCH}" PARENT_SCOPE)
- else ()
- # make dev version compare higher than any patch level of a released version
- set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}.99" PARENT_SCOPE)
- endif ()
- else ()
- message (SEND_ERROR "PETSC_DIR can not be used, file ${PETSC_DIR}/include/petscversion.h does not exist")
- endif ()
-endfunction ()
-
-find_path (PETSC_DIR include/petsc.h
- HINTS ENV PETSC_DIR
- PATHS
- #RedHat paths
- /usr/include/petsc
- # Debian paths
- /usr/lib/petscdir/3.12.4 /usr/lib/petscdir/3.12 #Ubuntu 20.04
- /usr/lib/petscdir/3.7.6 /usr/lib/petscdir/3.7 #Ubuntu 18.04
- /usr/lib/petscdir/3.6.2 /usr/lib/petscdir/3.6 #Ubuntu 16.04
- /usr/lib/petscdir/3.5.1 /usr/lib/petscdir/3.5
- /usr/lib/petscdir/3.4.2 /usr/lib/petscdir/3.4
- /usr/lib/petscdir/3.3 /usr/lib/petscdir/3.2 /usr/lib/petscdir/3.1
- /usr/lib/petscdir/3.0.0 /usr/lib/petscdir/2.3.3 /usr/lib/petscdir/2.3.2
- # MacPorts path
- /opt/local/lib/petsc
- $ENV{HOME}/petsc
- DOC "PETSc Directory")
-
-find_program (MAKE_EXECUTABLE NAMES make gmake)
-
-if (PETSC_DIR AND NOT PETSC_ARCH)
- set (_petsc_arches
- $ENV{PETSC_ARCH} # If set, use environment variable first
- linux-gnu-c-debug linux-gnu-c-opt # old Debian defaults (petsc compilation)
- arch-linux-c-opt or arch-linux-c-debug # new Debian defaults (petsc compilation)
- x86_64-linux-gnu-real i686-linux-gnu-real # Debian defaults (petsc system installation)
- arch-linux2-c-opt or arch-linux2-c-debug # old RedHat defaults (petsc compilation)
- x86_64-redhat-linux-gnu i686-redhat-linux-gnu # RedHat defaults (petsc apt installation)
- x86_64-unknown-linux-gnu i386-unknown-linux-gnu)
- set (petscconf "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
- foreach (arch ${_petsc_arches})
- if (NOT PETSC_ARCH)
- find_path (petscconf petscconf.h
- HINTS ${PETSC_DIR}
- PATH_SUFFIXES ${arch}/include bmake/${arch}
- NO_DEFAULT_PATH)
- if (petscconf)
- set (PETSC_ARCH "${arch}" CACHE STRING "PETSc build architecture")
- endif (petscconf)
- endif (NOT PETSC_ARCH)
- endforeach (arch)
- set (petscconf "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
-endif (PETSC_DIR AND NOT PETSC_ARCH)
-
-set (petsc_slaves LIBRARIES_SYS LIBRARIES_VEC LIBRARIES_MAT LIBRARIES_DM LIBRARIES_KSP LIBRARIES_SNES LIBRARIES_TS
- INCLUDE_DIR INCLUDE_CONF)
-include (FindPackageMultipass)
-find_package_multipass (PETSc petsc_config_current
- STATES DIR ARCH
- DEPENDENTS INCLUDES LIBRARIES COMPILER MPIEXEC ${petsc_slaves})
-
-# Determine whether the PETSc layout is old-style (through 2.3.3) or
-# new-style (>= 3.0.0)
-if (EXISTS "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/petscvariables") # > 3.5
- set (petsc_conf_rules "${PETSC_DIR}/lib/petsc/conf/rules")
- set (petsc_conf_variables "${PETSC_DIR}/lib/petsc/conf/variables")
-elseif (EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscconf.h") # > 2.3.3
- set (petsc_conf_rules "${PETSC_DIR}/conf/rules")
- set (petsc_conf_variables "${PETSC_DIR}/conf/variables")
-elseif (EXISTS "${PETSC_DIR}/bmake/${PETSC_ARCH}/petscconf.h") # <= 2.3.3
- set (petsc_conf_rules "${PETSC_DIR}/bmake/common/rules")
- set (petsc_conf_variables "${PETSC_DIR}/bmake/common/variables")
-elseif (PETSC_DIR)
- message (SEND_ERROR "The pair PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} do not specify a valid PETSc installation")
-endif ()
-
-if (petsc_conf_rules AND petsc_conf_variables AND NOT petsc_config_current)
- petsc_get_version()
-
- # Put variables into environment since they are needed to get
- # configuration (petscvariables) in the PETSc makefile
- set (ENV{PETSC_DIR} "${PETSC_DIR}")
- set (ENV{PETSC_ARCH} "${PETSC_ARCH}")
-
- # A temporary makefile to probe the PETSc configuration
- set (petsc_config_makefile "${PROJECT_BINARY_DIR}/Makefile.petsc")
- file (WRITE "${petsc_config_makefile}"
-"## This file was autogenerated by FindPETSc.cmake
-# PETSC_DIR = ${PETSC_DIR}
-# PETSC_ARCH = ${PETSC_ARCH}
-include ${petsc_conf_rules}
-include ${petsc_conf_variables}
-show :
-\t-@echo -n \${\${VARIABLE}}
-")
-
- macro (PETSC_GET_VARIABLE name var)
- set (${var} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
- execute_process (COMMAND ${MAKE_EXECUTABLE} --no-print-directory -f ${petsc_config_makefile} show VARIABLE=${name}
- OUTPUT_VARIABLE ${var}
- RESULT_VARIABLE petsc_return)
- endmacro (PETSC_GET_VARIABLE)
- petsc_get_variable (PETSC_LIB_DIR petsc_lib_dir)
- petsc_get_variable (PETSC_EXTERNAL_LIB_BASIC petsc_libs_external)
- petsc_get_variable (PETSC_CCPPFLAGS petsc_cpp_line)
- petsc_get_variable (PETSC_INCLUDE petsc_include)
- petsc_get_variable (PCC petsc_cc)
- petsc_get_variable (PCC_FLAGS petsc_cc_flags)
- petsc_get_variable (MPIEXEC petsc_mpiexec)
- # We are done with the temporary Makefile, calling PETSC_GET_VARIABLE after this point is invalid!
- file (REMOVE ${petsc_config_makefile})
-
- include (ResolveCompilerPaths)
- # Extract include paths and libraries from compile command line
- resolve_includes (petsc_includes_all "${petsc_cpp_line}")
-
- #on windows we need to make sure we're linking against the right
- #runtime library
- if (WIN32)
- if (petsc_cc_flags MATCHES "-MT")
- set(using_md False)
- foreach(flag_var
- CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE
- CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_RELWITHDEBINFO
- CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE
- CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_RELWITHDEBINFO)
- if(${flag_var} MATCHES "/MD")
- set(using_md True)
- endif(${flag_var} MATCHES "/MD")
- endforeach(flag_var)
- if(${using_md} MATCHES "True")
- message(WARNING "PETSc was built with /MT, but /MD is currently set.
- See http://www.cmake.org/Wiki/CMake_FAQ#How_can_I_build_my_MSVC_application_with_a_static_runtime.3F")
- endif(${using_md} MATCHES "True")
- endif (petsc_cc_flags MATCHES "-MT")
- endif (WIN32)
-
- include (CorrectWindowsPaths)
- convert_cygwin_path(petsc_lib_dir)
- message (STATUS "petsc_lib_dir ${petsc_lib_dir}")
-
- macro (PETSC_FIND_LIBRARY suffix name)
- set (PETSC_LIBRARY_${suffix} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE) # Clear any stale value, if we got here, we need to find it again
- if (WIN32)
- set (libname lib${name}) #windows expects "libfoo", linux expects "foo"
- else (WIN32)
- set (libname ${name})
- endif (WIN32)
- find_library (PETSC_LIBRARY_${suffix} NAMES ${libname} HINTS ${petsc_lib_dir} NO_DEFAULT_PATH)
- set (PETSC_LIBRARIES_${suffix} "${PETSC_LIBRARY_${suffix}}")
- mark_as_advanced (PETSC_LIBRARY_${suffix})
- endmacro (PETSC_FIND_LIBRARY suffix name)
-
- # Look for petscvec first, if it doesn't exist, we must be using single-library
- petsc_find_library (VEC petscvec)
- if (PETSC_LIBRARY_VEC)
- petsc_find_library (SYS "petscsys;petsc") # libpetscsys is called libpetsc prior to 3.1 (when single-library was introduced)
- petsc_find_library (MAT petscmat)
- petsc_find_library (DM petscdm)
- petsc_find_library (KSP petscksp)
- petsc_find_library (SNES petscsnes)
- petsc_find_library (TS petscts)
- macro (PETSC_JOIN libs deps)
- list (APPEND PETSC_LIBRARIES_${libs} ${PETSC_LIBRARIES_${deps}})
- endmacro (PETSC_JOIN libs deps)
- petsc_join (VEC SYS)
- petsc_join (MAT VEC)
- petsc_join (DM MAT)
- petsc_join (KSP DM)
- petsc_join (SNES KSP)
- petsc_join (TS SNES)
- petsc_join (ALL TS)
- else ()
- set (PETSC_LIBRARY_VEC "NOTFOUND" CACHE INTERNAL "Cleared" FORCE) # There is no libpetscvec
- petsc_find_library (SINGLE petsc) #check existence of libpetsc.so
- if (NOT PETSC_LIBRARY_SINGLE)
- petsc_find_library (SINGLE petsc_real) #check existence of libpetsc_real.so
- endif()
- if (NOT PETSC_LIBRARY_SINGLE)
- petsc_find_library (SINGLE petsc_complex) #check existence of libpetsc_complex.so
- endif()
- foreach (pkg SYS VEC MAT DM KSP SNES TS ALL)
- set (PETSC_LIBRARIES_${pkg} "${PETSC_LIBRARY_SINGLE}")
- endforeach ()
- endif ()
- if (PETSC_LIBRARY_TS)
- message (STATUS "Recognized PETSc install with separate libraries for each package")
- else ()
- message (STATUS "Recognized PETSc install with single library for all packages")
- endif ()
-
- include(Check${PETSC_LANGUAGE_BINDINGS}SourceRuns)
- macro (PETSC_TEST_RUNS includes libraries runs)
- if(${PETSC_LANGUAGE_BINDINGS} STREQUAL "C")
- set(_PETSC_ERR_FUNC "CHKERRQ(ierr)")
- elseif(${PETSC_LANGUAGE_BINDINGS} STREQUAL "CXX")
- set(_PETSC_ERR_FUNC "CHKERRXX(ierr)")
- endif()
- if (PETSC_VERSION VERSION_GREATER 3.1)
- set (_PETSC_TSDestroy "TSDestroy(&ts)")
- else ()
- set (_PETSC_TSDestroy "TSDestroy(ts)")
- endif ()
-
- set(_PETSC_TEST_SOURCE "
-static const char help[] = \"PETSc test program.\";
-#include <petscts.h>
-int main(int argc,char *argv[]) {
- PetscErrorCode ierr;
- TS ts;
-
- ierr = PetscInitialize(&argc,&argv,0,help);${_PETSC_ERR_FUNC};
- ierr = TSCreate(PETSC_COMM_WORLD,&ts);${_PETSC_ERR_FUNC};
- ierr = TSSetFromOptions(ts);${_PETSC_ERR_FUNC};
- ierr = ${_PETSC_TSDestroy};${_PETSC_ERR_FUNC};
- ierr = PetscFinalize();${_PETSC_ERR_FUNC};
- return 0;
-}
-")
- multipass_source_runs ("${includes}" "${libraries}" "${_PETSC_TEST_SOURCE}" ${runs} "${PETSC_LANGUAGE_BINDINGS}")
- if (${${runs}})
- set (PETSC_EXECUTABLE_RUNS "YES" CACHE BOOL
- "Can the system successfully run a PETSc executable? This variable can be manually set to \"YES\" to force CMake to accept a given PETSc configuration, but this will almost always result in a broken build. If you change PETSC_DIR, PETSC_ARCH, or PETSC_CURRENT you would have to reset this variable." FORCE)
- endif (${${runs}})
- endmacro (PETSC_TEST_RUNS)
-
-
- find_path (PETSC_INCLUDE_DIR petscts.h HINTS "${PETSC_DIR}" PATH_SUFFIXES include NO_DEFAULT_PATH)
- find_path (PETSC_INCLUDE_CONF petscconf.h HINTS "${PETSC_DIR}" PATH_SUFFIXES "${PETSC_ARCH}/include" "bmake/${PETSC_ARCH}" NO_DEFAULT_PATH)
- mark_as_advanced (PETSC_INCLUDE_DIR PETSC_INCLUDE_CONF)
- set (petsc_includes_minimal ${PETSC_INCLUDE_CONF} ${PETSC_INCLUDE_DIR})
-
- petsc_test_runs ("${petsc_includes_minimal}" "${PETSC_LIBRARIES_TS}" petsc_works_minimal)
- if (petsc_works_minimal)
- message (STATUS "Minimal PETSc includes and libraries work. This probably means we are building with shared libs.")
- set (petsc_includes_needed "${petsc_includes_minimal}")
- else (petsc_works_minimal) # Minimal includes fail, see if just adding full includes fixes it
- petsc_test_runs ("${petsc_includes_all}" "${PETSC_LIBRARIES_TS}" petsc_works_allincludes)
- if (petsc_works_allincludes) # It does, we just need all the includes (
- message (STATUS "PETSc requires extra include paths, but links correctly with only interface libraries. This is an unexpected configuration (but it seems to work fine).")
- set (petsc_includes_needed ${petsc_includes_all})
- else (petsc_works_allincludes) # We are going to need to link the external libs explicitly
- resolve_libraries (petsc_libraries_external "${petsc_libs_external}")
- foreach (pkg SYS VEC MAT DM KSP SNES TS ALL)
- list (APPEND PETSC_LIBRARIES_${pkg} ${petsc_libraries_external})
- endforeach (pkg)
- petsc_test_runs ("${petsc_includes_minimal}" "${PETSC_LIBRARIES_TS}" petsc_works_alllibraries)
- if (petsc_works_alllibraries)
- message (STATUS "PETSc only need minimal includes, but requires explicit linking to all dependencies. This is expected when PETSc is built with static libraries.")
- set (petsc_includes_needed ${petsc_includes_minimal})
- else (petsc_works_alllibraries)
- # It looks like we really need everything, should have listened to Matt
- set (petsc_includes_needed ${petsc_includes_all})
- petsc_test_runs ("${petsc_includes_all}" "${PETSC_LIBRARIES_TS}" petsc_works_all)
- if (petsc_works_all) # We fail anyways
- message (STATUS "PETSc requires extra include paths and explicit linking to all dependencies. This probably means you have static libraries and something unexpected in PETSc headers.")
- else (petsc_works_all) # We fail anyways
- message (STATUS "PETSc could not be used, maybe the install is broken.")
- endif (petsc_works_all)
- endif (petsc_works_alllibraries)
- endif (petsc_works_allincludes)
- endif (petsc_works_minimal)
-
- # We do an out-of-source build so __FILE__ will be an absolute path, hence __INSDIR__ is superfluous
- if (${PETSC_VERSION} VERSION_LESS 3.1)
- set (PETSC_DEFINITIONS "-D__SDIR__=\"\"" CACHE STRING "PETSc definitions" FORCE)
- else ()
- set (PETSC_DEFINITIONS "-D__INSDIR__=" CACHE STRING "PETSc definitions" FORCE)
- endif ()
- # Sometimes this can be used to assist FindMPI.cmake
- set (PETSC_MPIEXEC ${petsc_mpiexec} CACHE FILEPATH "Executable for running PETSc MPI programs" FORCE)
- set (PETSC_INCLUDES ${petsc_includes_needed} CACHE STRING "PETSc include path" FORCE)
- set (PETSC_LIBRARIES ${PETSC_LIBRARIES_ALL} CACHE STRING "PETSc libraries" FORCE)
- set (PETSC_COMPILER ${petsc_cc} CACHE FILEPATH "PETSc compiler" FORCE)
- # Note that we have forced values for all these choices. If you
- # change these, you are telling the system to trust you that they
- # work. It is likely that you will end up with a broken build.
- mark_as_advanced (PETSC_INCLUDES PETSC_LIBRARIES PETSC_COMPILER PETSC_DEFINITIONS PETSC_MPIEXEC PETSC_EXECUTABLE_RUNS)
-endif ()
-
-include (FindPackageHandleStandardArgs)
-find_package_handle_standard_args (PETSc
- "PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH."
- PETSC_INCLUDES PETSC_LIBRARIES PETSC_EXECUTABLE_RUNS)
+++ /dev/null
-# Distributed under the OSI-approved BSD 3-Clause License. See accompanying
-# file Copyright.txt or https://cmake.org/licensing for details.
-
-#[=======================================================================[.rst:
-FindPython
-----------
-
-Find Python interpreter, compiler and development environment (include
-directories and libraries).
-
-Three components are supported:
-
-* ``Interpreter``: search for Python interpreter.
-* ``Compiler``: search for Python compiler. Only offered by IronPython.
-* ``Development``: search for development artifacts (include directories and
- libraries).
-
-If no ``COMPONENTS`` is specified, ``Interpreter`` is assumed.
-
-To ensure consistent versions between components ``Interpreter``, ``Compiler``
-and ``Development``, specify all components at the same time::
-
- find_package (Python COMPONENTS Interpreter Development)
-
-This module looks preferably for version 3 of Python. If not found, version 2
-is searched.
-To manage concurrent versions 3 and 2 of Python, use :module:`FindPython3` and
-:module:`FindPython2` modules rather than this one.
-
-Imported Targets
-^^^^^^^^^^^^^^^^
-
-This module defines the following :ref:`Imported Targets <Imported Targets>`:
-
-``Python::Interpreter``
- Python interpreter. Target defined if component ``Interpreter`` is found.
-``Python::Compiler``
- Python compiler. Target defined if component ``Compiler`` is found.
-``Python::Python``
- Python library. Target defined if component ``Development`` is found.
-
-Result Variables
-^^^^^^^^^^^^^^^^
-
-This module will set the following variables in your project
-(see :ref:`Standard Variable Names <CMake Developer Standard Variable Names>`):
-
-``Python_FOUND``
- System has the Python requested components.
-``Python_Interpreter_FOUND``
- System has the Python interpreter.
-``Python_EXECUTABLE``
- Path to the Python interpreter.
-``Python_INTERPRETER_ID``
- A short string unique to the interpreter. Possible values include:
- * Python
- * ActivePython
- * Anaconda
- * Canopy
- * IronPython
-``Python_STDLIB``
- Standard platform independent installation directory.
-
- Information returned by
- ``distutils.sysconfig.get_python_lib(plat_specific=False,standard_lib=True)``.
-``Python_STDARCH``
- Standard platform dependent installation directory.
-
- Information returned by
- ``distutils.sysconfig.get_python_lib(plat_specific=True,standard_lib=True)``.
-``Python_SITELIB``
- Third-party platform independent installation directory.
-
- Information returned by
- ``distutils.sysconfig.get_python_lib(plat_specific=False,standard_lib=False)``.
-``Python_SITEARCH``
- Third-party platform dependent installation directory.
-
- Information returned by
- ``distutils.sysconfig.get_python_lib(plat_specific=True,standard_lib=False)``.
-``Python_Compiler_FOUND``
- System has the Python compiler.
-``Python_COMPILER``
- Path to the Python compiler. Only offered by IronPython.
-``Python_COMPILER_ID``
- A short string unique to the compiler. Possible values include:
- * IronPython
-``Python_Development_FOUND``
- System has the Python development artifacts.
-``Python_INCLUDE_DIRS``
- The Python include directories.
-``Python_LIBRARIES``
- The Python libraries.
-``Python_LIBRARY_DIRS``
- The Python library directories.
-``Python_RUNTIME_LIBRARY_DIRS``
- The Python runtime library directories.
-``Python_VERSION``
- Python version.
-``Python_VERSION_MAJOR``
- Python major version.
-``Python_VERSION_MINOR``
- Python minor version.
-``Python_VERSION_PATCH``
- Python patch version.
-
-Hints
-^^^^^
-
-``Python_ROOT_DIR``
- Define the root directory of a Python installation.
-
-``Python_USE_STATIC_LIBS``
- * If not defined, search for shared libraries and static libraries in that
- order.
- * If set to TRUE, search **only** for static libraries.
- * If set to FALSE, search **only** for shared libraries.
-
-Commands
-^^^^^^^^
-
-This module defines the command ``Python_add_library`` which have the same
-semantic as :command:`add_library` but take care of Python module naming rules
-(only applied if library is of type ``MODULE``) and add dependency to target
-``Python::Python``::
-
- Python_add_library (my_module MODULE src1.cpp)
-
-If library type is not specified, ``MODULE`` is assumed.
-#]=======================================================================]
-
-
-set (_PYTHON_PREFIX Python)
-
-if (DEFINED Python_FIND_VERSION)
- set (_Python_REQUIRED_VERSION_MAJOR ${Python_FIND_VERSION_MAJOR})
-
- include (${CMAKE_CURRENT_LIST_DIR}/FindPython/Support.cmake)
-else()
- # iterate over versions in quiet and NOT required modes to avoid multiple
- # "Found" messages and prematurally failure.
- set (_Python_QUIETLY ${Python_FIND_QUIETLY})
- set (_Python_REQUIRED ${Python_FIND_REQUIRED})
- set (Python_FIND_QUIETLY TRUE)
- set (Python_FIND_REQUIRED FALSE)
-
- set (_Python_REQUIRED_VERSIONS 3 2)
- set (_Python_REQUIRED_VERSION_LAST 2)
-
- foreach (_Python_REQUIRED_VERSION_MAJOR IN LISTS _Python_REQUIRED_VERSIONS)
- set (Python_FIND_VERSION ${_Python_REQUIRED_VERSION_MAJOR})
- include (${CMAKE_CURRENT_LIST_DIR}/FindPython/Support.cmake)
- if (Python_FOUND OR
- _Python_REQUIRED_VERSION_MAJOR EQUAL _Python_REQUIRED_VERSION_LAST)
- break()
- endif()
- # clean-up some CACHE variables to ensure look-up restart from scratch
- foreach (_Python_ITEM IN LISTS _Python_CACHED_VARS)
- unset (${_Python_ITEM} CACHE)
- endforeach()
- endforeach()
-
- unset (Python_FIND_VERSION)
-
- set (Python_FIND_QUIETLY ${_Python_QUIETLY})
- set (Python_FIND_REQUIRED ${_Python_REQUIRED})
- if (Python_FIND_REQUIRED OR NOT Python_FIND_QUIETLY)
- # call again validation command to get "Found" or error message
- find_package_handle_standard_args (Python HANDLE_COMPONENTS
- REQUIRED_VARS ${_Python_REQUIRED_VARS}
- VERSION_VAR Python_VERSION)
- endif()
-endif()
-
-if (COMMAND __Python_add_library)
- macro (Python_add_library)
- __Python_add_library (Python ${ARGV})
- endmacro()
-endif()
-
-unset (_PYTHON_PREFIX)
+++ /dev/null
-# PackageMultipass - this module defines two macros
-#
-# FIND_PACKAGE_MULTIPASS (Name CURRENT
-# STATES VAR0 VAR1 ...
-# DEPENDENTS DEP0 DEP1 ...)
-#
-# This function creates a cache entry <UPPERCASED-Name>_CURRENT which
-# the user can set to "NO" to trigger a reconfiguration of the package.
-# The first time this function is called, the values of
-# <UPPERCASED-Name>_VAR0, ... are saved. If <UPPERCASED-Name>_CURRENT
-# is false or if any STATE has changed since the last time
-# FIND_PACKAGE_MULTIPASS() was called, then CURRENT will be set to "NO",
-# otherwise CURRENT will be "YES". IF not CURRENT, then
-# <UPPERCASED-Name>_DEP0, ... will be FORCED to NOTFOUND.
-# Example:
-# find_path (FOO_DIR include/foo.h)
-# FIND_PACKAGE_MULTIPASS (Foo foo_current
-# STATES DIR
-# DEPENDENTS INCLUDES LIBRARIES)
-# if (NOT foo_current)
-# # Make temporary files, run programs, etc, to determine FOO_INCLUDES and FOO_LIBRARIES
-# endif (NOT foo_current)
-#
-# MULTIPASS_SOURCE_RUNS (Name INCLUDES LIBRARIES SOURCE RUNS LANGUAGE)
-# Always runs the given test, use this when you need to re-run tests
-# because parent variables have made old cache entries stale. The LANGUAGE
-# variable is either C or CXX indicating which compiler the test should
-# use.
-# MULTIPASS_C_SOURCE_RUNS (Name INCLUDES LIBRARIES SOURCE RUNS)
-# DEPRECATED! This is only included for backwards compatability. Use
-# the more general MULTIPASS_SOURCE_RUNS instead.
-# Always runs the given test, use this when you need to re-run tests
-# because parent variables have made old cache entries stale.
-
-macro (FIND_PACKAGE_MULTIPASS _name _current)
- string (TOUPPER ${_name} _NAME)
- set (_args ${ARGV})
- list (REMOVE_AT _args 0 1)
-
- set (_states_current "YES")
- list (GET _args 0 _cmd)
- if (_cmd STREQUAL "STATES")
- list (REMOVE_AT _args 0)
- list (GET _args 0 _state)
- while (_state AND NOT _state STREQUAL "DEPENDENTS")
- # The name of the stored value for the given state
- set (_stored_var PACKAGE_MULTIPASS_${_NAME}_${_state})
- if (NOT "${${_stored_var}}" STREQUAL "${${_NAME}_${_state}}")
- set (_states_current "NO")
- endif (NOT "${${_stored_var}}" STREQUAL "${${_NAME}_${_state}}")
- set (${_stored_var} "${${_NAME}_${_state}}" CACHE INTERNAL "Stored state for ${_name}." FORCE)
- list (REMOVE_AT _args 0)
- list (GET _args 0 _state)
- endwhile (_state AND NOT _state STREQUAL "DEPENDENTS")
- endif (_cmd STREQUAL "STATES")
-
- set (_stored ${_NAME}_CURRENT)
- if (NOT ${_stored})
- set (${_stored} "YES" CACHE BOOL "Is the configuration for ${_name} current? Set to \"NO\" to reconfigure." FORCE)
- set (_states_current "NO")
- endif (NOT ${_stored})
-
- set (${_current} ${_states_current})
- if (NOT ${_current} AND PACKAGE_MULTIPASS_${_name}_CALLED)
- message (STATUS "Clearing ${_name} dependent variables")
- # Clear all the dependent variables so that the module can reset them
- list (GET _args 0 _cmd)
- if (_cmd STREQUAL "DEPENDENTS")
- list (REMOVE_AT _args 0)
- foreach (dep ${_args})
- set (${_NAME}_${dep} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
- endforeach (dep)
- endif (_cmd STREQUAL "DEPENDENTS")
- set (${_NAME}_FOUND "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
- endif ()
- set (PACKAGE_MULTIPASS_${name}_CALLED YES CACHE INTERNAL "Private" FORCE)
-endmacro (FIND_PACKAGE_MULTIPASS)
-
-
-macro (MULTIPASS_SOURCE_RUNS includes libraries source runs language)
- include (Check${language}SourceRuns)
- # This is a ridiculous hack. CHECK_${language}_SOURCE_* thinks that if the
- # *name* of the return variable doesn't change, then the test does
- # not need to be re-run. We keep an internal count which we
- # increment to guarantee that every test name is unique. If we've
- # gotten here, then the configuration has changed enough that the
- # test *needs* to be rerun.
- if (NOT MULTIPASS_TEST_COUNT)
- set (MULTIPASS_TEST_COUNT 00)
- endif (NOT MULTIPASS_TEST_COUNT)
- math (EXPR _tmp "${MULTIPASS_TEST_COUNT} + 1") # Why can't I add to a cache variable?
- set (MULTIPASS_TEST_COUNT ${_tmp} CACHE INTERNAL "Unique test ID")
- set (testname MULTIPASS_TEST_${MULTIPASS_TEST_COUNT}_${runs})
- set (CMAKE_REQUIRED_INCLUDES ${includes})
- set (CMAKE_REQUIRED_LIBRARIES ${libraries})
- if(${language} STREQUAL "C")
- check_c_source_runs ("${source}" ${testname})
- elseif(${language} STREQUAL "CXX")
- check_cxx_source_runs ("${source}" ${testname})
- endif()
- set (${runs} "${${testname}}")
-endmacro (MULTIPASS_SOURCE_RUNS)
-
-macro (MULTIPASS_C_SOURCE_RUNS includes libraries source runs)
- multipass_source_runs("${includes}" "${libraries}" "${source}" ${runs} "C")
-endmacro (MULTIPASS_C_SOURCE_RUNS)
+++ /dev/null
-#[==[.md
-# paraview-config.cmake
-
-This file is used by CMake when finding ParaView.
-
-The following variables are provided by this module:
-
- * `ParaView_VERSION`: The version of ParaView found.
- * `ParaView_PREFIX_PATH`: Install prefix for ParaView.
- * `PARAVIEW_USE_QT`: If ParaView's Qt GUI is available.
- * `PARAVIEW_USE_MPI`: If ParaView is built with MPI support.
- * `PARAVIEW_USE_PYTHON`: If ParaView is built with Python support.
- * `PARAVIEW_PYTHONPATH`: Where ParaView's Python modules live under the
- install prefix. Unset if Python is not available.
- * `PARAVIEW_PLUGIN_SUBDIR`: The subdirectory under the library directory for
- plugins.
- * `ParaView_CLIENT_XML_FILES`: XML files for client applications to use to
- reproduce ParaView's menu items. Only provided if `PARAVIEW_USE_QT`
- is set.
- * `ParaView_LIBRARIES`: The list of modules specified by `COMPONENTS` and
- `OPTIONAL_COMPONENTS`. This may be used in `MODULES` arguments in the API
- (e.g., `vtk_module_autoinit`). All modules are also targets and may be
- linked to using `target_link_libraries`.
-#]==]
-
-set(${CMAKE_FIND_PACKAGE_NAME}_CMAKE_MODULE_PATH_save "${CMAKE_MODULE_PATH}")
-list(INSERT CMAKE_MODULE_PATH 0
- "${CMAKE_CURRENT_LIST_DIR}")
-
-set("${CMAKE_FIND_PACKAGE_NAME}_CMAKE_PREFIX_PATH_save" "${CMAKE_PREFIX_PATH}")
-include("${CMAKE_CURRENT_LIST_DIR}/paraview-prefix.cmake")
-set("${CMAKE_FIND_PACKAGE_NAME}_PREFIX_PATH"
- "${_vtk_module_import_prefix}")
-unset(_vtk_module_import_prefix)
-list(INSERT CMAKE_PREFIX_PATH 0
- "${${CMAKE_FIND_PACKAGE_NAME}_PREFIX_PATH}")
-
-set("${CMAKE_FIND_PACKAGE_NAME}_VERSION" "@PARAVIEW_VERSION_FULL@")
-
-unset("${CMAKE_FIND_PACKAGE_NAME}_FOUND")
-
-set(_paraview_use_external_vtk "@PARAVIEW_USE_EXTERNAL_VTK@")
-set(_paraview_find_package_args)
-if (NOT _paraview_use_external_vtk)
- list(APPEND _paraview_find_package_args
- PATHS "${CMAKE_CURRENT_LIST_DIR}/vtk"
- NO_DEFAULT_PATH)
-endif ()
-if (${CMAKE_FIND_PACKAGE_NAME}_FIND_QUIETLY)
- list(APPEND _paraview_find_package_args
- QUIET)
-endif ()
-find_package(VTK REQUIRED
- ${_paraview_find_package_args})
-if (NOT VTK_FOUND)
- set("${CMAKE_FIND_PACKAGE_NAME}_FOUND" 0)
-endif ()
-unset(_paraview_find_package_args)
-unset(_paraview_use_external_vtk)
-
-set(PARAVIEW_USE_QT "@PARAVIEW_USE_QT@")
-set(PARAVIEW_USE_MPI "@PARAVIEW_USE_MPI@")
-set(PARAVIEW_USE_PYTHON "@PARAVIEW_USE_PYTHON@")
-set(PARAVIEW_PLUGIN_SUBDIR "paraview@paraview_version_suffix@/plugins")
-
-if (PARAVIEW_USE_PYTHON)
- set(PARAVIEW_PYTHONPATH "@PARAVIEW_PYTHON_SITE_PACKAGES_SUFFIX@")
- include("${CMAKE_CURRENT_LIST_DIR}/ParaViewPython-targets.cmake")
- # Unset this for now; these targets will be defined later.
- unset("${CMAKE_FIND_PACKAGE_NAME}_FOUND")
- unset("${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE")
-endif ()
-
-include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}-targets.cmake")
-include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}-vtk-module-properties.cmake")
-
-include("${CMAKE_CURRENT_LIST_DIR}/paraview-find-package-helpers.cmake" OPTIONAL)
-include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}-vtk-module-find-packages.cmake")
-
-include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}Plugins-paraview_plugins-targets-depends.cmake")
-include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}Plugins-targets.cmake")
-include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}Plugins-paraview-plugin-properties.cmake")
-
-include("${CMAKE_CURRENT_LIST_DIR}/ParaViewTools-targets.cmake" OPTIONAL)
-
-include("${CMAKE_CURRENT_LIST_DIR}/ParaViewClient.cmake")
-include("${CMAKE_CURRENT_LIST_DIR}/ParaViewPlugin.cmake")
-include("${CMAKE_CURRENT_LIST_DIR}/ParaViewServerManager.cmake")
-include("${CMAKE_CURRENT_LIST_DIR}/ParaViewTesting.cmake")
-include("${CMAKE_CURRENT_LIST_DIR}/vtkModuleWrapClientServer.cmake")
-
-if (@PARAVIEW_USE_PYTHON@) # PARAVIEW_USE_PYTHON
- include("${CMAKE_CURRENT_LIST_DIR}/paraview.modules-vtk-python-module-properties.cmake")
-endif ()
-
-if (@PARAVIEW_USE_QT@) # PARAVIEW_USE_QT
- include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}Client-targets.cmake")
- include("${CMAKE_CURRENT_LIST_DIR}/ParaView-client-xml.cmake")
-endif ()
-
-set(_paraview_components_to_check)
-foreach (_paraview_component IN LISTS "${CMAKE_FIND_PACKAGE_NAME}_FIND_COMPONENTS")
- if (DEFINED "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND")
- # It was already not-found (likely due to `find-package` failures).
- elseif (TARGET "${CMAKE_FIND_PACKAGE_NAME}::${_paraview_component}")
- list(APPEND _paraview_components_to_check
- "${_paraview_component}")
- else ()
- set("${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND" 0)
- list(APPEND "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_NOT_FOUND_MESSAGE"
- "The ${_paraview_component} component is not available.")
- endif ()
-endforeach ()
-unset(_paraview_component)
-
-set(_paraview_vtk_components)
-
-while (_paraview_components_to_check)
- list(GET _paraview_components_to_check 0 _paraview_component)
- list(REMOVE_AT _paraview_components_to_check 0)
- if (DEFINED "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND")
- # We've already made a determiniation.
- continue ()
- endif ()
-
- get_property(_paraview_dependencies
- TARGET "${CMAKE_FIND_PACKAGE_NAME}::${_paraview_component}"
- PROPERTY "INTERFACE_paraview_module_depends")
- string(REPLACE "${CMAKE_FIND_PACKAGE_NAME}::" "" _paraview_dependencies "${_paraview_dependencies}")
- set(_paraview_all_dependencies_checked TRUE)
- foreach (_paraview_dependency IN LISTS _paraview_dependencies)
- # Handle VTK module dependencies.
- string(FIND "${_paraview_component}" "VTK::" _paraview_vtk_idx)
- if (NOT _paraview_vtk_idx EQUAL -1)
- unset(_paraview_vtk_idx)
- if (NOT TARGET "${_paraview_dependency}")
- set("${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND" 0)
- list(APPEND "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_NOT_FOUND_MESSAGE"
- "Failed to find the ${_paraview_dependency} module.")
- endif ()
- continue ()
- endif ()
- unset(_paraview_vtk_idx)
-
- if (DEFINED "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_dependency}_FOUND")
- if (NOT ${CMAKE_FIND_PACKAGE_NAME}_${_paraview_dependency}_FOUND)
- set("${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND" 0)
- list(APPEND "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_NOT_FOUND_MESSAGE"
- "Failed to find the ${_paraview_dependency} component.")
- endif ()
- else ()
- # Check its dependencies.
- list(APPEND _paraview_components_to_check
- "${_paraview_dependency}")
- set(_paraview_all_found FALSE)
- endif ()
- endforeach ()
- if (NOT DEFINED "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND")
- if (_paraview_all_dependencies_checked)
- set("${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND" 1)
- else ()
- list(APPEND _paraview_components_to_check
- "${_paraview_component}")
- endif ()
- endif ()
- unset(_paraview_all_dependencies_checked)
- unset(_paraview_dependency)
- unset(_paraview_dependencies)
-endwhile ()
-unset(_paraview_component)
-unset(_paraview_components_to_check)
-
-set(_paraview_missing_components)
-foreach (_paraview_component IN LISTS "${CMAKE_FIND_PACKAGE_NAME}_FIND_COMPONENTS")
- if (NOT ${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND AND ${CMAKE_FIND_PACKAGE_NAME}_FIND_REQUIRED_${_paraview_component})
- list(APPEND _paraview_missing_components
- "${_paraview_component}")
- endif ()
-endforeach ()
-
-if (_paraview_missing_components)
- list(REMOVE_DUPLICATES _paraview_missing_components)
- list(SORT _paraview_missing_components)
- string(REPLACE ";" ", " _paraview_missing_components "${_paraview_missing_components}")
- set("${CMAKE_FIND_PACKAGE_NAME}_FOUND" 0)
- set("${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE"
- "Could not find the ${CMAKE_FIND_PACKAGE_NAME} package with the following required components: ${_paraview_missing_components}.")
-endif ()
-unset(_paraview_missing_components)
-
-set("${CMAKE_FIND_PACKAGE_NAME}_LIBRARIES")
-if (NOT DEFINED "${CMAKE_FIND_PACKAGE_NAME}_FOUND")
- # If nothing went wrong, we've successfully found the package.
- set("${CMAKE_FIND_PACKAGE_NAME}_FOUND" 1)
- # Build the `_LIBRARIES` variable.
- foreach (_paraview_component IN LISTS "${CMAKE_FIND_PACKAGE_NAME}_FIND_COMPONENTS")
- list(APPEND "${CMAKE_FIND_PACKAGE_NAME}_LIBRARIES"
- "${CMAKE_FIND_PACKAGE_NAME}::${_paraview_component}")
- endforeach ()
- unset(_paraview_component)
-endif ()
-
-set(CMAKE_PREFIX_PATH "${${CMAKE_FIND_PACKAGE_NAME}_CMAKE_PREFIX_PATH_save}")
-unset("${CMAKE_FIND_PACKAGE_NAME}_CMAKE_PREFIX_PATH_save")
-
-set(CMAKE_MODULE_PATH "${${CMAKE_FIND_PACKAGE_NAME}_CMAKE_MODULE_PATH_save}")
-unset(${CMAKE_FIND_PACKAGE_NAME}_CMAKE_MODULE_PATH_save)
-
-# Compatibility with old code.
-if (NOT ${CMAKE_FIND_PACKAGE_NAME}_FIND_VERSION)
- set(PARAVIEW_USE_FILE "${CMAKE_CURRENT_LIST_DIR}/paraview-use-file-deprecated.cmake")
-elseif (${CMAKE_FIND_PACKAGE_NAME}_FIND_VERSION VERSION_LESS 5.7)
- set(PARAVIEW_USE_FILE "${CMAKE_CURRENT_LIST_DIR}/paraview-use-file-compat.cmake")
-else ()
- set(PARAVIEW_USE_FILE "${CMAKE_CURRENT_LIST_DIR}/paraview-use-file-error.cmake")
-endif ()
-
-# 5.8 renamed these variables, so provide them if 5.8 is not the minimum
-# requested.
-if (NOT ${CMAKE_FIND_PACKAGE_NAME}_FIND_VERSION OR
- ${CMAKE_FIND_PACKAGE_NAME}_FIND_VERSION VERSION_LESS "5.8")
- set(PARAVIEW_BUILD_QT_GUI "${PARAVIEW_USE_QT}")
- set(PARAVIEW_ENABLE_PYTHON "${PARAVIEW_USE_PYTHON}")
-endif ()
+++ /dev/null
-# - Find a VTK installation or build tree.
-# The following variables are set if VTK is found. If VTK is not
-# found, VTK_FOUND is set to false.
-# VTK_FOUND - Set to true when VTK is found.
-# VTK_USE_FILE - CMake file to use VTK.
-# VTK_MAJOR_VERSION - The VTK major version number.
-# VTK_MINOR_VERSION - The VTK minor version number
-# (odd non-release).
-# VTK_BUILD_VERSION - The VTK patch level
-# (meaningless for odd minor).
-# VTK_INCLUDE_DIRS - Include directories for VTK
-# VTK_LIBRARY_DIRS - Link directories for VTK libraries
-# VTK_KITS - List of VTK kits, in CAPS
-# (COMMON,IO,) etc.
-# VTK_LANGUAGES - List of wrapped languages, in CAPS
-# (TCL, PYHTON,) etc.
-# The following cache entries must be set by the user to locate VTK:
-# VTK_DIR - The directory containing VTKConfig.cmake.
-# This is either the root of the build tree,
-# or the lib/vtk directory. This is the
-# only cache entry.
-# The following variables are set for backward compatibility and
-# should not be used in new code:
-# USE_VTK_FILE - The full path to the UseVTK.cmake file.
-# This is provided for backward
-# compatibility. Use VTK_USE_FILE
-# instead.
-#
-
-#=============================================================================
-# Copyright 2001-2009 Kitware, Inc.
-#
-# Distributed under the OSI-approved BSD License (the "License");
-# see accompanying file Copyright.txt for details.
-#
-# This software is distributed WITHOUT ANY WARRANTY; without even the
-# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the License for more information.
-#=============================================================================
-# (To distributed this file outside of CMake, substitute the full
-# License text for the above reference.)
-
-# Assume not found.
-SET(VTK_FOUND 0)
-
-# VTK 4.0 did not provide VTKConfig.cmake.
-IF("${VTK_FIND_VERSION}" VERSION_LESS 4.1)
- SET(_VTK_40_ALLOW 1)
- IF(VTK_FIND_VERSION)
- SET(_VTK_40_ONLY 1)
- ENDIF()
-ENDIF()
-
-# Construct consitent error messages for use below.
-SET(VTK_DIR_DESCRIPTION "directory containing VTKConfig.cmake. This is either the root of the build tree, or PREFIX/lib/vtk for an installation.")
-IF(_VTK_40_ALLOW)
- SET(VTK_DIR_DESCRIPTION "${VTK_DIR_DESCRIPTION} For VTK 4.0, this is the location of UseVTK.cmake. This is either the root of the build tree or PREFIX/include/vtk for an installation.")
-ENDIF()
-SET(VTK_DIR_MESSAGE "VTK not found. Set the VTK_DIR cmake cache entry to the ${VTK_DIR_DESCRIPTION}")
-
-# Check whether VTK 4.0 has already been found.
-IF(_VTK_40_ALLOW AND VTK_DIR)
- IF(EXISTS ${VTK_DIR}/UseVTK.cmake AND NOT EXISTS ${VTK_DIR}/VTKConfig.cmake)
- SET(VTK_FOUND 1)
- INCLUDE(UseVTKConfig40) # No VTKConfig; load VTK 4.0 settings.
- ENDIF()
-ENDIF()
-
-# Use the Config mode of the find_package() command to find VTKConfig.
-# If this succeeds (possibly because VTK_DIR is already set), the
-# command will have already loaded VTKConfig.cmake and set VTK_FOUND.
-IF(NOT _VTK_40_ONLY AND NOT VTK_FOUND)
- FIND_PACKAGE(VTK QUIET NO_MODULE)
-ENDIF()
-
-# Special search for VTK 4.0.
-IF(_VTK_40_ALLOW AND NOT VTK_DIR)
- # Old scripts may set these directories in the CMakeCache.txt file.
- # They can tell us where to find VTKConfig.cmake.
- SET(VTK_DIR_SEARCH_LEGACY "")
- IF(VTK_BINARY_PATH AND USE_BUILT_VTK)
- SET(VTK_DIR_SEARCH_LEGACY ${VTK_DIR_SEARCH_LEGACY} ${VTK_BINARY_PATH})
- ENDIF(VTK_BINARY_PATH AND USE_BUILT_VTK)
- IF(VTK_INSTALL_PATH AND USE_INSTALLED_VTK)
- SET(VTK_DIR_SEARCH_LEGACY ${VTK_DIR_SEARCH_LEGACY}
- ${VTK_INSTALL_PATH}/lib/vtk)
- ENDIF(VTK_INSTALL_PATH AND USE_INSTALLED_VTK)
-
- # Look for UseVTK.cmake in build trees or under <prefix>/include/vtk.
- FIND_PATH(VTK_DIR
- NAMES UseVTK.cmake
- PATH_SUFFIXES vtk-4.0 vtk
- HINTS $ENV{VTK_DIR}
-
- PATHS
-
- # Support legacy cache files.
- ${VTK_DIR_SEARCH_LEGACY}
-
- # Read from the CMakeSetup registry entries. It is likely that
- # VTK will have been recently built.
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild1]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild2]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild3]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild4]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild5]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild6]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild7]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild8]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild9]
- [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild10]
-
- # Help the user find it if we cannot.
- DOC "The ${VTK_DIR_DESCRIPTION}"
- )
-
- IF(VTK_DIR)
- IF(EXISTS ${VTK_DIR}/UseVTK.cmake AND NOT EXISTS ${VTK_DIR}/VTKConfig.cmake)
- SET(VTK_FOUND 1)
- INCLUDE(UseVTKConfig40) # No VTKConfig; load VTK 4.0 settings.
- ELSE()
- # We found the wrong version. Pretend we did not find it.
- SET(VTK_DIR "VTK_DIR-NOTFOUND" CACHE PATH "The ${VTK_DIR_DESCRIPTION}" FORCE)
- ENDIF()
- ENDIF()
-ENDIF()
-
-#-----------------------------------------------------------------------------
-IF(VTK_FOUND)
- # Set USE_VTK_FILE for backward-compatability.
- SET(USE_VTK_FILE ${VTK_USE_FILE})
-ELSE(VTK_FOUND)
- # VTK not found, explain to the user how to specify its location.
- IF(VTK_FIND_REQUIRED)
- MESSAGE(FATAL_ERROR ${VTK_DIR_MESSAGE})
- ELSE(VTK_FIND_REQUIRED)
- IF(NOT VTK_FIND_QUIETLY)
- MESSAGE(STATUS ${VTK_DIR_MESSAGE})
- ENDIF(NOT VTK_FIND_QUIETLY)
- ENDIF(VTK_FIND_REQUIRED)
-ENDIF(VTK_FOUND)
-
+++ /dev/null
-# Copyright (C) 2007-2019 CEA/DEN, EDF R&D, OPEN CASCADE
-#
-# This library is free software; you can redistribute it and/or
-# modify it under the terms of the GNU Lesser General Public
-# License as published by the Free Software Foundation; either
-# version 2.1 of the License, or (at your option) any later version.
-#
-# This library is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-# Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this library; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-#
-# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
-#
-
-MESSAGE(STATUS "Check for XDR ...")
-
-INCLUDE(FindPackageHandleStandardArgs)
-
-FIND_PATH(XDR_INCLUDE_DIRS rpc/xdr.h PATH_SUFFIXES tirpc)
-IF(XDR_INCLUDE_DIRS)
- SET(XDR_DEFINITIONS "-DHAS_XDR")
-ENDIF(XDR_INCLUDE_DIRS)
-
-IF(WIN32)
- FIND_LIBRARY(XDR_LIBRARIES xdr) # To get the .lib file from XDR
- FIND_PATH(XDR_INCLUDE_DIRS2 stdint.h PATH_SUFFIXES src/msvc) # To get the stdint.h from XDR (needed by types.h)
- IF(XDR_INCLUDE_DIRS)
- IF(XDR_INCLUDE_DIRS2)
- LIST(APPEND XDR_INCLUDE_DIRS "${XDR_INCLUDE_DIRS2}")
- ELSE()
- SET(XDR_INCLUDE_DIRS "${XDR_INCLUDE_DIRS2}") # Make the detection fail
- ENDIF()
- ENDIF()
- FIND_PACKAGE_HANDLE_STANDARD_ARGS(XDR REQUIRED_VARS XDR_INCLUDE_DIRS XDR_LIBRARIES)
-ELSE(WIN32)
- FIND_LIBRARY(XDR_LIBRARY NAMES tirpc xdr)
- IF(NOT XDR_LIBRARY)
- MESSAGE(STATUS "Could not find XDR libraries ...")
- ELSE()
- MESSAGE(STATUS "Found XDR libraries ${XDR_LIBRARY} ...")
- SET(XDR_LIBRARIES ${XDR_LIBRARY})
- ENDIF()
- FIND_PACKAGE_HANDLE_STANDARD_ARGS(XDR REQUIRED_VARS XDR_INCLUDE_DIRS)
-ENDIF(WIN32)
+++ /dev/null
-# ResolveCompilerPaths - this module defines two macros
-#
-# RESOLVE_LIBRARIES (XXX_LIBRARIES LINK_LINE)
-# This macro is intended to be used by FindXXX.cmake modules.
-# It parses a compiler link line and resolves all libraries
-# (-lfoo) using the library path contexts (-L/path) in scope.
-# The result in XXX_LIBRARIES is the list of fully resolved libs.
-# Example:
-#
-# RESOLVE_LIBRARIES (FOO_LIBRARIES "-L/A -la -L/B -lb -lc -ld")
-#
-# will be resolved to
-#
-# FOO_LIBRARIES:STRING="/A/liba.so;/B/libb.so;/A/libc.so;/usr/lib/libd.so"
-#
-# if the filesystem looks like
-#
-# /A: liba.so libc.so
-# /B: liba.so libb.so
-# /usr/lib: liba.so libb.so libc.so libd.so
-#
-# and /usr/lib is a system directory.
-#
-# Note: If RESOLVE_LIBRARIES() resolves a link line differently from
-# the native linker, there is a bug in this macro (please report it).
-#
-# RESOLVE_INCLUDES (XXX_INCLUDES INCLUDE_LINE)
-# This macro is intended to be used by FindXXX.cmake modules.
-# It parses a compile line and resolves all includes
-# (-I/path/to/include) to a list of directories. Other flags are ignored.
-# Example:
-#
-# RESOLVE_INCLUDES (FOO_INCLUDES "-I/A -DBAR='\"irrelevant -I/string here\"' -I/B")
-#
-# will be resolved to
-#
-# FOO_INCLUDES:STRING="/A;/B"
-#
-# assuming both directories exist.
-# Note: as currently implemented, the -I/string will be picked up mistakenly (cry, cry)
-include (CorrectWindowsPaths)
-
-macro (RESOLVE_LIBRARIES LIBS LINK_LINE)
- string (REGEX MATCHALL "((-L|-l|-Wl)([^\" ]+|\"[^\"]+\")|[^\" ]+\\.(a|so|dll|lib))" _all_tokens "${LINK_LINE}")
- set (_libs_found)
- set (_directory_list)
- foreach (token ${_all_tokens})
- if (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
- # If it's a library path, add it to the list
- string (REGEX REPLACE "^-L" "" token ${token})
- string (REGEX REPLACE "//" "/" token ${token})
- convert_cygwin_path(token)
- list (APPEND _directory_list ${token})
- elseif (token MATCHES "^(-l([^\" ]+|\"[^\"]+\")|[^\" ]+\\.(a|so|dll|lib))")
- # It's a library, resolve the path by looking in the list and then (by default) in system directories
- if (WIN32) #windows expects "libfoo", linux expects "foo"
- string (REGEX REPLACE "^-l" "lib" token ${token})
- else (WIN32)
- string (REGEX REPLACE "^-l" "" token ${token})
- endif (WIN32)
- set (_root)
- if (token MATCHES "^/") # We have an absolute path
- #separate into a path and a library name:
- string (REGEX MATCH "[^/]*\\.(a|so|dll|lib)$" libname ${token})
- string (REGEX MATCH ".*[^${libname}$]" libpath ${token})
- convert_cygwin_path(libpath)
- set (_directory_list ${_directory_list} ${libpath})
- set (token ${libname})
- endif (token MATCHES "^/")
- set (_lib "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
- find_library (_lib ${token} HINTS ${_directory_list} ${_root})
- if (_lib)
- string (REPLACE "//" "/" _lib ${_lib})
- list (APPEND _libs_found ${_lib})
- else (_lib)
- message (STATUS "Unable to find library ${token}")
- endif (_lib)
- endif (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
- endforeach (token)
- set (_lib "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
- # only the LAST occurence of each library is required since there should be no circular dependencies
- if (_libs_found)
- list (REVERSE _libs_found)
- list (REMOVE_DUPLICATES _libs_found)
- list (REVERSE _libs_found)
- endif (_libs_found)
- set (${LIBS} "${_libs_found}")
-endmacro (RESOLVE_LIBRARIES)
-
-macro (RESOLVE_INCLUDES INCS COMPILE_LINE)
- string (REGEX MATCHALL "-I([^\" ]+|\"[^\"]+\")" _all_tokens "${COMPILE_LINE}")
- set (_incs_found "")
- foreach (token ${_all_tokens})
- string (REGEX REPLACE "^-I" "" token ${token})
- string (REGEX REPLACE "//" "/" token ${token})
- convert_cygwin_path(token)
- if (EXISTS ${token})
- list (APPEND _incs_found ${token})
- else (EXISTS ${token})
- message (STATUS "Include directory ${token} does not exist")
- endif (EXISTS ${token})
- endforeach (token)
- list (REMOVE_DUPLICATES _incs_found)
- set (${INCS} "${_incs_found}")
-endmacro (RESOLVE_INCLUDES)
export PETSC_LIBRARIES=@PETSC_DIR@/@PETSC_ARCH@/lib
export MEDFILE_ROOT_DIR=@MEDFILE_ROOT_DIR@
export MEDFILE_INCLUDE_DIRS=@MEDFILE_INCLUDE_DIRS@
-export MEDFILE_LIBRARIES=@MEDFILE_ROOT_DIR@/lib
+export MEDFILE_LIBRARIES=@MEDFILE_LIBRARIES@
export MEDCOUPLING_ROOT_DIR=@MEDCOUPLING_ROOT_DIR@
export MEDCOUPLING_INCLUDE_DIR=@MEDCOUPLING_INCLUDE_DIR@
export MEDCOUPLING_LIBRARIES=@MEDCOUPLING_LIBRARIES@
--- /dev/null
+PROJECT(PETSc)
+CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
+
+
+
add_subdirectory (${examples_dir})
add_subdirectory (validation)
- add_custom_target (tests COMMAND ctest -O tests.log)
+ add_custom_target (tests_CDMATH COMMAND ctest -O tests.log)
add_custom_target (check COMMAND ctest -E 'validation|Example')# may be replace ctest -E with ctest -LE
add_custom_target (examples COMMAND ctest -R Example)# may be replace ctest -R with ctest -L
add_custom_target (validation COMMAND ctest -R validation)# may be replace ctest -R with ctest -L
+++ /dev/null
-
-if (CDMATH_WITH_PYTHON AND CDMATH_WITH_PETSC AND CDMATH_WITH_POSTPRO)
-
- SET(MESH_FILE ../../ressources/meshSphere.med )
- SET(MESH_NAME "Sphere" )
-
- ADD_TEST(ExampleSpectrumLaplaceBeltrami_3DFE_SPHERE ${PYTHON_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/SpectrumFiniteElements3DLaplace-Beltrami.py ${MESH_FILE} ${MESH_NAME} )
- SET_PROPERTY(TEST ExampleSpectrumLaplaceBeltrami_3DFE_SPHERE PROPERTY ENVIRONMENT "LD_LIBRARY_PATH=${CMAKE_INSTALL_PREFIX}/lib:${CMAKE_INSTALL_PREFIX}/lib/medcoupling:${CMAKE_INSTALL_PREFIX}/lib/med:${PETSC_DIR}/${PETSC_ARCH}/lib:${HDF5_ROOT_DIR}/lib:${PV_LIB_DIR}")
- SET_PROPERTY(TEST ExampleSpectrumLaplaceBeltrami_3DFE_SPHERE APPEND PROPERTY ENVIRONMENT "PYTHONPATH=${CMAKE_INSTALL_PREFIX}/lib/cdmath:${CMAKE_INSTALL_PREFIX}/bin/cdmath:${CMAKE_INSTALL_PREFIX}/${MEDCOUPLING_INSTALL_PYTHON}:${CMAKE_INSTALL_PREFIX}/bin/cdmath/postprocessing:${PV_PYTHON_DIR}")
-
- SET(MESH_FILE ../../ressources/meshTorus.med )
- SET(MESH_NAME "Torus" )
-
- ADD_TEST(ExampleSpectrumLaplaceBeltrami_3DFE_TORUS ${PYTHON_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/SpectrumFiniteElements3DLaplace-Beltrami.py ${MESH_FILE} ${MESH_NAME} )
- SET_PROPERTY(TEST ExampleSpectrumLaplaceBeltrami_3DFE_TORUS PROPERTY ENVIRONMENT "LD_LIBRARY_PATH=${CMAKE_INSTALL_PREFIX}/lib:${CMAKE_INSTALL_PREFIX}/lib/medcoupling:${CMAKE_INSTALL_PREFIX}/lib/med:${PETSC_DIR}/${PETSC_ARCH}/lib:${HDF5_ROOT_DIR}/lib:${PV_LIB_DIR}")
- SET_PROPERTY(TEST ExampleSpectrumLaplaceBeltrami_3DFE_TORUS APPEND PROPERTY ENVIRONMENT "PYTHONPATH=${CMAKE_INSTALL_PREFIX}/lib/cdmath:${CMAKE_INSTALL_PREFIX}/bin/cdmath:${CMAKE_INSTALL_PREFIX}/${MEDCOUPLING_INSTALL_PYTHON}:${CMAKE_INSTALL_PREFIX}/bin/cdmath/postprocessing:${PV_PYTHON_DIR}")
-
- SET(MESH_FILE ../../ressources/meshCubeSkin.med )
- SET(MESH_NAME "CubeSkin" )
-
- ADD_TEST(ExampleSpectrumLaplaceBeltrami_3DFE_CUBESKIN ${PYTHON_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/SpectrumFiniteElements3DLaplace-Beltrami.py ${MESH_FILE} ${MESH_NAME} )
- SET_PROPERTY(TEST ExampleSpectrumLaplaceBeltrami_3DFE_CUBESKIN PROPERTY ENVIRONMENT "LD_LIBRARY_PATH=${CMAKE_INSTALL_PREFIX}/lib:${CMAKE_INSTALL_PREFIX}/lib/medcoupling:${CMAKE_INSTALL_PREFIX}/lib/med:${PETSC_DIR}/${PETSC_ARCH}/lib:${HDF5_ROOT_DIR}/lib:${PV_LIB_DIR}")
- SET_PROPERTY(TEST ExampleSpectrumLaplaceBeltrami_3DFE_CUBESKIN APPEND PROPERTY ENVIRONMENT "PYTHONPATH=${CMAKE_INSTALL_PREFIX}/lib/cdmath:${CMAKE_INSTALL_PREFIX}/bin/cdmath:${CMAKE_INSTALL_PREFIX}/${MEDCOUPLING_INSTALL_PYTHON}:${CMAKE_INSTALL_PREFIX}/bin/cdmath/postprocessing:${PV_PYTHON_DIR}")
-
-endif (CDMATH_WITH_PYTHON AND CDMATH_WITH_PETSC AND CDMATH_WITH_POSTPRO)
-
-
+++ /dev/null
-# -*-coding:utf-8 -*
-#===============================================================================================================================
-# Name : Calcul EF du spectre de l'opérateur de Laplace-Beltrami -\triangle sur une surface en 3D
-# Author : Michael Ndjinga
-# Copyright : CEA Saclay 2020
-# Description : Utilisation de la méthode des éléménts finis P1 avec champs discrétisés aux noeuds d'un maillage triangulaire
-# Création et sauvegarde des champs résultant en utilisant la librairie CDMATH
-#================================================================================================================================
-
-import cdmath
-from math import pow
-import numpy as np
-import PV_routines
-import VTK_routines
-import paraview.simple as pvs
-import sys
-
-#Chargement du maillage triangulaire de la surface
-#=================================================
-my_mesh = cdmath.Mesh(sys.argv[1])
-mesh_name=sys.argv[2]
-if(not my_mesh.isTriangular()) :
- raise ValueError("Wrong cell types : mesh is not made of triangles")
-if(my_mesh.getMeshDimension()!=2) :
- raise ValueError("Wrong mesh dimension : expected a surface of dimension 2")
-if(my_mesh.getSpaceDimension()!=3) :
- raise ValueError("Wrong space dimension : expected a space of dimension 3")
-
-nbNodes = my_mesh.getNumberOfNodes()
-nbCells = my_mesh.getNumberOfCells()
-
-print("Mesh building/loading done")
-print("nb of nodes=", nbNodes)
-print("nb of cells=", nbCells)
-
-maxNbNeighbours = my_mesh.getMaxNbNeighbours(cdmath.NODES)+1#This is to determine the number of non zero coefficients in the sparse finite element rigidity matrix
-
-# Construction de la matrice de rigidité
-#=======================================
-Rigidite=cdmath.SparseMatrixPetsc(nbNodes,nbNodes,maxNbNeighbours)# warning : third argument is number of non zero coefficients per line
-
-# Vecteurs gradient de la fonction de forme associée à chaque noeud d'un triangle
-GradShapeFunc0=cdmath.Vector(3)
-GradShapeFunc1=cdmath.Vector(3)
-GradShapeFunc2=cdmath.Vector(3)
-
-normalFace0=cdmath.Vector(3)
-normalFace1=cdmath.Vector(3)
-
-nodal_volumes=cdmath.Vector(nbNodes)
-
-#On parcourt les triangles du domaine
-for i in range(nbCells):
-
- Ci=my_mesh.getCell(i)
-
- #Contribution à la matrice de rigidité
- nodeId0=Ci.getNodeId(0)
- nodeId1=Ci.getNodeId(1)
- nodeId2=Ci.getNodeId(2)
- N0=my_mesh.getNode(nodeId0)
- N1=my_mesh.getNode(nodeId1)
- N2=my_mesh.getNode(nodeId2)
-
- #Build normal to cell Ci
- normalFace0[0]=Ci.getNormalVector(0,0)
- normalFace0[1]=Ci.getNormalVector(0,1)
- normalFace0[2]=Ci.getNormalVector(0,2)
- normalFace1[0]=Ci.getNormalVector(1,0)
- normalFace1[1]=Ci.getNormalVector(1,1)
- normalFace1[2]=Ci.getNormalVector(1,2)
-
- normalCell = normalFace0.crossProduct(normalFace1)
- normalCell = normalCell/normalCell.norm()
-
- cellMat=cdmath.Matrix(4)
- cellMat[0,0]=N0.x()
- cellMat[0,1]=N0.y()
- cellMat[0,2]=N0.z()
- cellMat[1,0]=N1.x()
- cellMat[1,1]=N1.y()
- cellMat[1,2]=N1.z()
- cellMat[2,0]=N2.x()
- cellMat[2,1]=N2.y()
- cellMat[2,2]=N2.z()
- cellMat[3,0]=normalCell[0]
- cellMat[3,1]=normalCell[1]
- cellMat[3,2]=normalCell[2]
- cellMat[0,3]=1
- cellMat[1,3]=1
- cellMat[2,3]=1
- cellMat[3,3]=0
-
- #Formule des gradients voir EF P1 -> calcul déterminants
- GradShapeFunc0[0]= cellMat.partMatrix(0,0).determinant()/2
- GradShapeFunc0[1]=-cellMat.partMatrix(0,1).determinant()/2
- GradShapeFunc0[2]= cellMat.partMatrix(0,2).determinant()/2
- GradShapeFunc1[0]=-cellMat.partMatrix(1,0).determinant()/2
- GradShapeFunc1[1]= cellMat.partMatrix(1,1).determinant()/2
- GradShapeFunc1[2]=-cellMat.partMatrix(1,2).determinant()/2
- GradShapeFunc2[0]= cellMat.partMatrix(2,0).determinant()/2
- GradShapeFunc2[1]=-cellMat.partMatrix(2,1).determinant()/2
- GradShapeFunc2[2]= cellMat.partMatrix(2,2).determinant()/2
-
- #Création d'un tableau (numéro du noeud, gradient de la fonction de forme
- GradShapeFuncs={nodeId0 : GradShapeFunc0}
- GradShapeFuncs[nodeId1]=GradShapeFunc1
- GradShapeFuncs[nodeId2]=GradShapeFunc2
-
- # Remplissage de la matrice de rigidité et du second membre
- for j in [nodeId0,nodeId1,nodeId2] :
- nodal_volumes[j]+=Ci.getMeasure()/3
- #Contribution de la cellule triangulaire i à la ligne j du système linéaire
- for k in [nodeId0,nodeId1,nodeId2] :
- Rigidite.addValue(j,k,GradShapeFuncs[j]*GradShapeFuncs[k]/Ci.getMeasure())
-
-print("Linear system matrix building done")
-
-# Conditionnement de la matrice de rigidité
-#==========================================
-cond = Rigidite.getConditionNumber(True)
-print("Condition number is ",cond)
-
-# Spectre de la matrice de rigidité
-#==================================
-#Symétrisation de la matrice de rigidité
-for i in range(nbNodes):
- nodal_volumes[i]=1/nodal_volumes[i]
-Rigidite.leftDiagonalScale(nodal_volumes)
-
-nev=9
-d=Rigidite.getEigenvectorsDataArrayDouble(nev)
-my_eigenfield = cdmath.Field("Eigenvectors field", cdmath.NODES, my_mesh, nev)
-my_eigenfield.setFieldByDataArrayDouble(d)
-
-# Sauvegarde du champ résultat
-#===========================
-my_eigenfield.writeVTK("spectrumFiniteElementsOn"+mesh_name+"Poisson")
--- /dev/null
+cmake_minimum_required (VERSION 3.1)
+set(CMAKE_CXX_STANDARD 11)
+set(CMAKE_CXX_STANDARD_REQUIRED ON)
+
+# Project name
+project (SOLVERLAB C CXX)
+set (SOLVERLAB_VERSION_MAJOR 0)
+set (SOLVERLAB_VERSION_MINOR 1)
+
+option (SOLVERLAB_WITH_DOCUMENTATION "Generate SOLVERLAB documentation" ON)
+option (SOLVERLAB_WITH_PYTHON "Compile Python interface of SOLVERLAB" ON)
+option (SOLVERLAB_WITH_GUI "Compile a Graphic user Interface for SOLVERLAB" OFF)
+option (SOLVERLAB_WITH_PACKAGE "Generate RPM, Debian and tarball packages" OFF)
+option (SOLVERLAB_WITH_COREFLOWS "Generate COREFLOWS module" ON)
+option (SOLVERLAB_WITH_TESTS "Generate SOLVERLAB example tests" ON)
+
+#Path to installed libraries
+set (PETSC_DIR OFF CACHE STRING "PETSc library path" )
+set (SLEPC_DIR OFF CACHE STRING "SLEPc library path" )
+set (HDF5_ROOT OFF CACHE STRING "HDF5 library path" )#For the compilation of MED with a specific version of HDF5
+set (MEDFILE_ROOT_DIR OFF CACHE STRING "MED library path" )
+set (MEDCOUPLING_ROOT_DIR OFF CACHE STRING "MEDCoupling library path" )
+
+#url of tarball librairies
+set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.13.tar.gz
+ CACHE STRING "PETSc tarball path/url" )
+set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.13.4.tar.gz
+ CACHE STRING "SLEPC tarball path/url" )
+set (DOWNLOAD_F2CBLASLAPACK ${CDMATH_SOURCE_DIR}/pre_requis/PETSc/f2cblaslapack-3.4.2.q4.tar.gz
+ CACHE STRING "F2CBLASLAPACK tarball path/url" )
+set (DOWNLOAD_HDF5 ${CDMATH_SOURCE_DIR}/pre_requis/PETSc/hdf5-1.10.3.tar.gz
+ CACHE STRING "HDF5 tarball path/url" )
+set (DOWNLOAD_MED http://files.salome-platform.org/Salome/other/med-4.1.0.tar.gz
+ CACHE STRING "MED tarball path/url")
+set (DOWNLOAD_MEDCOUPLING http://files.salome-platform.org/Salome/other/medCoupling-9.4.0.tar.gz
+ CACHE STRING "MEDCoupling tarball path/url" )
+
+list (APPEND CMAKE_MODULE_PATH "${SOLVERLAB_SOURCE_DIR}/cmake_files")
+
+######################################################
+# Detection or compilation of PETSc+SLEPc+HDF5 #
+######################################################
+ if ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR)
+ if (NOT PETSC_DIR)
+ set(PETSC_DIR $ENV{PETSC_DIR})
+ message ( STATUS "Checking variable PETSC_DIR : " $ENV{PETSC_DIR} )
+ else (NOT PETSC_DIR)
+ message ( STATUS "Checking variable PETSC_DIR : " ${PETSC_DIR} )
+ endif(NOT PETSC_DIR)
+
+ find_package (PETSc 3.4 REQUIRED)
+ petsc_get_version ()
+
+ message ( STATUS "PETSc found. Version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}" )
+ set(PETSC_INSTALL ${PETSC_DIR})
+
+ #Define and search slepc variables
+ if ( NOT SLEPC_DIR )
+ if ( DEFINED ENV{SLEPC_DIR} )
+ set(SLEPC_DIR $ENV{SLEPC_DIR})
+ else ( DEFINED ENV{SLEPC_DIR} )
+ set(SLEPC_DIR ${PETSC_DIR}/${PETSC_ARCH})
+ endif( DEFINED ENV{SLEPC_DIR} )
+ endif( NOT SLEPC_DIR)
+
+ message ( STATUS "Checking variable SLEPC_DIR" )
+ if ( IS_DIRECTORY ${SLEPC_DIR}/include AND EXISTS ${SLEPC_DIR}/lib/libslepc.so)
+ set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
+ set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
+ message( STATUS "SLEPc found at ${SLEPC_DIR}" )
+ else()
+ message( FATAL_ERROR "SLEPc not found at ${SLEPC_DIR}" )
+ endif()
+
+ #define hdf5 variables
+ if ( NOT HDF5_ROOT )#hdf5 is not defined in cmake arguments
+ if ( DEFINED ENV{HDF5_ROOT} )#hdf5 is defined in the environment
+ set(HDF5_ROOT $ENV{HDF5_ROOT})
+ else( DEFINED ENV{HDF5_ROOT} )#hdf5 is not defined in the environment
+ #HDF5 to be found in petsc external packages
+ set(HDF5_ROOT ${PETSC_DIR}/${PETSC_ARCH})# define hint for hdf5/med installation in petsc external packages
+ endif( DEFINED ENV{HDF5_ROOT} )
+ endif( NOT HDF5_ROOT )
+ set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
+ set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
+ else ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR )
+ message ( STATUS "PETSC_DIR not set, searching PETSc and SLEPc in the system" )
+
+ if ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" ) #Case fedora/redhat system install
+ message ( STATUS "PETSC includes found in /usr/include/petsc/" )
+ message ( STATUS "PETSC library found in /usr/lib64" )
+ set(PETSC_DIR /usr/)
+ set(PETSC_INCLUDES /usr/include/petsc /usr/include/petsc/petsc/mpiuni)
+ set(PETSC_LIBRARIES /usr/lib64/libpetsc.so)
+
+ set(PETSC_VERSION "3.8") #3.8 for fedora 26 , 3.9 for fedora 29 , 3.10 for fedora 30, , 3.12 for fedora 32
+
+ set(CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, petsc-devel (>= 3.4)") # This is not fully working yet.
+ set(PETSC_INSTALL ${PETSC_DIR})
+
+ #Define and search slepc variables
+ if ( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
+ message( STATUS "SLEPc includes found in /usr/include/slepc/" )
+ message( STATUS "SLEPc library found in /usr/lib64/slepc/" )
+ set(SLEPC_DIR /usr/)
+ set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
+ set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
+ set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, slepc-devel (>= 3.4)") # This is not fully working yet.
+ else ( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
+ message( FATAL_ERROR "SLEPc not found in the system" )
+ endif( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
+
+ #HDF5 to be found in the system
+ if ( NOT HDF5_ROOT AND NOT DEFINED ENV{HDF5_ROOT} )#hdf5 is not defined in the environment
+ find_package(HDF5 REQUIRED)
+ set(CPACK_DEBIAN_PACKAGE_DEPENDS "libhdf5-dev")
+ set(CPACK_RPM_PACKAGE_REQUIRES "hdf5-devel")
+ endif( NOT HDF5_ROOT AND NOT DEFINED ENV{HDF5_ROOT} )
+
+
+ #elseif ( IS_DIRECTORY "/usr/lib/petsc/include" AND EXISTS "/usr/lib/petsc/lib/libpetsc_real.so" ) #Case ubuntu/debian system install
+ # message ( STATUS "PETSc includes found in /usr/lib/petsc/include")
+ # message ( STATUS "PETSc library found in /usr/lib/petsc/lib/libpetsc_real.so")
+ # set(PETSC_DIR /usr/lib/petsc/)
+ # set(PETSC_INCLUDES ${PETSC_DIR}/include ${PETSC_DIR}/include/petsc/mpiuni)
+ # set(PETSC_LIBRARIES ${PETSC_DIR}/lib/libpetsc_real.so)
+
+ # find_package (PETSc 3.4 REQUIRED)
+ # petsc_get_version ()
+ # set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, petsc-dev (>= 3.4)") # This is not fully working yet.
+
+ # Define and search slepc variables
+ # if ( IS_DIRECTORY "/usr/lib/slepc/include" AND EXISTS "/usr/lib/slepc/lib/libslepc_real.so" )
+ # message( STATUS "SLEPc includes found in /usr/lib/slepc/include" )
+ # message( STATUS "SLEPc library found in /usr/lib/slepc/lib/libslepc_real.so" )
+ # set(SLEPC_DIR /usr/lib/slepc/)
+ # set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
+ # set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc_real.so)
+ # set (CPACK_DEBIAN_PACKAGE_REQUIRES "${CPACK_DEBIAN_PACKAGE_REQUIRES}, slepc-devel (>= 3.4)") # This is not fully working yet.
+ # else ( IS_DIRECTORY "/usr/lib/slepc/include" AND EXISTS "/usr/lib/slepc/lib/libslepc_real.so" )
+ # message( FATAL_ERROR "SLEPc not found in the system" )
+ # endif( IS_DIRECTORY "/usr/lib/slepc/include" AND EXISTS "/usr/lib/slepc/lib/libslepc_real.so" )
+
+ #elseif ( IS_DIRECTORY "/usr/local/lib/python2.7/dist-packages/petsc") #Case ubuntu/debian system pip install
+
+ else ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" ) # No petsc in system, do compile petsc along with slepc as an external package
+ message (STATUS "PETSC not found in the system")
+ message (STATUS "PETSC will be downloaded and compiled from ${DOWNLOAD_PETSC}" )
+ message (STATUS "SLEPC will be downloaded and compiled from ${DOWNLOAD_SLEPC}" )
+ message (STATUS "HDF5 will be downloaded and compiled from ${DOWNLOAD_HDF5}" )
+
+ #extract tarball name
+ string(LENGTH "${DOWNLOAD_PETSC}" tarball_url_length)#length of the tarball
+ string(FIND "${DOWNLOAD_PETSC}" "/" start_tarball_name REVERSE )# last occurence of "/"
+ MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
+ MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
+ string(SUBSTRING ${DOWNLOAD_PETSC} ${start_tarball_name} ${tarball_name_length} PETSC_TARBALL_NAME)
+
+ set(PETSC_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${PETSC_TARBALL_NAME}) # Location of the final install
+ set(PETSC_INSTALL ${CMAKE_INSTALL_PREFIX}/share/petsc)#folder to copy petsc libraries and include files
+
+ ExternalProject_Add (PETSc
+ URL ${DOWNLOAD_PETSC}
+ SOURCE_DIR ${PETSC_DIR}
+ BUILD_IN_SOURCE TRUE
+ CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${PETSC_INSTALL} --with-debugging=0 --with-mpi=0 --download-f2cblaslapack=${DOWNLOAD_F2CBLASLAPACK} --with-fc=0 --download-slepc=${DOWNLOAD_SLEPC} --download-hdf5=${DOWNLOAD_HDF5}
+ BUILD_COMMAND make
+ TEST_COMMAND make check
+ INSTALL_COMMAND make all
+ INSTALL_DIR ${PETSC_DIR}
+ STAMP_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis
+ LOG_DOWNLOAD TRUE # Wrap download in script to log output
+ LOG_UPDATE TRUE # Wrap update in script to log output
+ LOG_CONFIGURE TRUE # Wrap configure in script to log output
+ LOG_BUILD TRUE # Wrap build in script to log output
+ LOG_TEST TRUE # Wrap test in script to log output
+ LOG_INSTALL TRUE # Wrap install in script to log output
+ )
+
+ #file (STRINGS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
+ #message( STATUS "PETSc version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}" )
+ message( STATUS "PETSc, SLEPc and HDF5 will be installed at ${PETSC_INSTALL}")
+
+ string(SUBSTRING ${PETSC_TARBALL_NAME} 6 ${tarball_name_length} PETSC_VERSION)
+ #define slepc variables
+ set(SLEPC_DIR ${PETSC_INSTALL})
+ set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
+ set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
+
+ #define hdf5 variables
+ if ( NOT HDF5_ROOT )#hdf5 is not defined in cmake arguments
+ if ( DEFINED ENV{HDF5_ROOT} )#hdf5 is defined in the environment
+ set(HDF5_ROOT $ENV{HDF5_ROOT})
+ else( DEFINED ENV{HDF5_ROOT} )#hdf5 is not defined in the environment
+ set(HDF5_ROOT ${PETSC_INSTALL})#HDF5 to be found in petsc installation
+ endif( DEFINED ENV{HDF5_ROOT} )
+ endif( NOT HDF5_ROOT )
+ set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
+ set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
+
+ endif ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" )
+ endif ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR )
+
+ if ( ${PETSC_VERSION} VERSION_GREATER 3.5 )
+ add_definitions(-DPETSC_VERSION_GREATER_3_5)
+ endif( ${PETSC_VERSION} VERSION_GREATER 3.5 )
+string(REPLACE ";" ":" PETSC_INCLUDES_INSTALL "${PETSC_INCLUDES}")# use colon instead of semicolon in environment file env_CDMATH.sh
+
+######################################################
+# Detection or compilation of MEDFile #
+######################################################
+if( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR})
+
+ if ( NOT MEDFILE_ROOT_DIR )
+ set(MEDFILE_ROOT_DIR $ENV{MEDFILE_ROOT_DIR} )
+ endif( NOT MEDFILE_ROOT_DIR )
+
+ find_package (MEDFile REQUIRED)
+ message (STATUS "MEDFile found in ${MEDFILE_ROOT_DIR}")
+
+else( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR})
+ #string(FIND "${HDF5_LIBRARIES}" "libhdf5.so" pos)
+ #string(SUBSTRING "${HDF5_LIBRARIES}" 0 ${pos} HDF5_LIBRARY_DIR)
+
+ message(STATUS "MED will be downloaded and installed from ${DOWNLOAD_MED}")
+ set(MACHINE PCLINUX)
+ set(MEDFILE_DEFINITIONS "-D${MACHINE} -DMEDFILE_INSTALL_DOC=OFF")#Comment ne pas compiler la doc ?
+ set(MEDFILE_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/med) # Location of the final install
+
+ #extraction of the tarball archive name
+ string(LENGTH "${DOWNLOAD_MED}" tarball_url_length)#length of the name of the tarball
+ string(FIND "${DOWNLOAD_MED}" "/" start_tarball_name REVERSE )# last occurence of "/"
+ MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
+ MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
+ string(SUBSTRING ${DOWNLOAD_MED} ${start_tarball_name} ${tarball_name_length} MED_TARBALL_NAME)
+
+ ExternalProject_Add (MED
+ URL ${DOWNLOAD_MED} #location of med tarball
+ SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MED_TARBALL_NAME}
+ BUILD_IN_SOURCE TRUE
+ CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${MEDFILE_ROOT_DIR} --with-hdf5=${HDF5_ROOT} --with-hdf5-include=${HDF5_ROOT}/include --with-hdf5-lib=${HDF5_LIBRARY_DIR} --with-hdf5-bin=${HDF5_ROOT}/bin --with-swig=yes
+ BUILD_COMMAND make
+ INSTALL_COMMAND make install
+ INSTALL_DIR ${MEDFILE_ROOT_DIR}
+ STAMP_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis
+ LOG_DOWNLOAD TRUE # Wrap download in script to log output
+ LOG_UPDATE TRUE # Wrap update in script to log output
+ LOG_CONFIGURE TRUE # Wrap configure in script to log output
+ LOG_BUILD TRUE # Wrap build in script to log output
+ LOG_TEST TRUE # Wrap test in script to log output
+ LOG_INSTALL TRUE # Wrap install in script to log output
+ )
+
+ set(MEDFILE_INCLUDE_DIRS ${MEDFILE_ROOT_DIR}/include)# Nécessaire pour le medloader et les sous-dossiers mesh, et IJKMesh
+ set(MEDFILE_LIBRARIES ${MEDFILE_ROOT_DIR}/lib)# Nécessaire pour le env_SOLVERLAB.sh
+ set(MEDFILE_C_LIBRARIES med medC)# Nécessaire pour le medloader
+
+endif( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR})
+
+add_library(med SHARED IMPORTED)
+set_property(TARGET med PROPERTY IMPORTED_LOCATION ${MEDFILE_ROOT_DIR}/lib/libmed.so)
+add_library(medC SHARED IMPORTED)
+set_property(TARGET medC PROPERTY IMPORTED_LOCATION ${MEDFILE_ROOT_DIR}/lib/libmedC.so)
+
+string(REPLACE ";" ":" MEDFILE_LIBRARIES_INSTALL "${MEDFILE_LIBRARIES}")# use colon instead of semicolon in environment file env_SOLVERLAB.sh
+
+######################################################
+# Detection or compilation of MEDCoupling #
+######################################################
+if( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
+
+ if( NOT MEDCOUPLING_ROOT_DIR )
+ set(MEDCOUPLING_ROOT_DIR $ENV{MEDCOUPLING_ROOT_DIR} )
+ endif( NOT MEDCOUPLING_ROOT_DIR )
+
+ message (STATUS "Seeking MEDCoupling library in ${MEDCOUPLING_ROOT_DIR}")
+
+ if( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
+ message (FATAL_ERROR "MEDCoupling library not found in ${MEDCOUPLING_ROOT_DIR}")
+ else( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
+ message (STATUS "MEDCoupling library found in ${MEDCOUPLING_ROOT_DIR}")
+ endif( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
+
+else( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
+ message(STATUS "MEDCoupling will be downloaded and installed from ${DOWNLOAD_MEDCOUPLING}")
+ set(MEDCOUPLING_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/medcoupling) # Location of the final install
+ SET(ENV{HDF5_ROOT} ${HDF5_ROOT})#MEDCoupling install process seems to require an environment variable
+
+ #extraction of the tarball archive name
+ string(LENGTH "${DOWNLOAD_MEDCOUPLING}" tarball_url_length)#length of the tarball
+ string(FIND "${DOWNLOAD_MEDCOUPLING}" "/" start_tarball_name REVERSE )# last occurence of "/"
+ MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
+ MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
+ string(SUBSTRING ${DOWNLOAD_MEDCOUPLING} ${start_tarball_name} ${tarball_name_length} MEDCOUPLING_TARBALL_NAME)
+ string(SUBSTRING ${MEDCOUPLING_TARBALL_NAME} 12 ${tarball_name_length} MEDCOUPLING_VERSION_NAME)
+
+ message(STATUS "MEDCoupling version is ${MEDCOUPLING_VERSION_NAME}")
+
+ ExternalProject_Add (MEDCoupling
+ URL ${DOWNLOAD_MEDCOUPLING} #location of medcoupling tarball
+ SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MEDCOUPLING_TARBALL_NAME}
+# BUILD_IN_SOURCE FALSE
+ CONFIGURE_COMMAND cmake <SOURCE_DIR>/${MEDCOUPLING_TARBALL_NAME} -DCMAKE_INSTALL_PREFIX=${MEDCOUPLING_ROOT_DIR} -DCONFIGURATION_ROOT_DIR=<SOURCE_DIR>/configuration-${MEDCOUPLING_VERSION_NAME} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ENABLE_PARTITIONER=OFF -DMEDCOUPLING_PARTITIONER_METIS=OFF -DMEDCOUPLING_PARTITIONER_SCOTCH=OFF -DMEDCOUPLING_ENABLE_RENUMBER=OFF -DMEDCOUPLING_BUILD_DOC=OFF -DHDF5_ROOT_DIR=${HDF5_ROOT}
+ BUILD_COMMAND make
+ INSTALL_COMMAND make install
+ INSTALL_DIR ${MEDCOUPLING_ROOT_DIR}
+ STAMP_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis
+ LOG_DOWNLOAD TRUE # Wrap download in script to log output
+ LOG_UPDATE TRUE # Wrap update in script to log output
+ LOG_CONFIGURE TRUE # Wrap configure in script to log output
+ LOG_BUILD TRUE # Wrap build in script to log output
+ LOG_TEST TRUE # Wrap test in script to log output
+ LOG_INSTALL TRUE # Wrap install in script to log output
+ )
+
+endif( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR} )
+
+set(MEDCOUPLING_INCLUDE_DIR ${MEDCOUPLING_ROOT_DIR}/include)
+set(MEDCOUPLING_LIBRARIES ${MEDCOUPLING_ROOT_DIR}/lib )#for environment file env_SOLVERLAB.sh
+
+add_library(medloader SHARED IMPORTED )
+set_property(TARGET medloader PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so)
+add_library(medcoupling SHARED IMPORTED )
+set_property(TARGET medcoupling PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so)
+
+if (TARGET MED AND TARGET PETSc)
+ ExternalProject_Add_StepDependencies( MED build PETSc )#PETSc doit être compilé avant MED car c'est PETSc qui compile HDF5
+endif(TARGET MED AND TARGET PETSc)
+
+if (TARGET MED AND TARGET MEDCoupling)
+ ExternalProject_Add_StepDependencies( MEDCoupling build MED )#MED doit être compilé avant MEDCoupling
+endif(TARGET MED AND TARGET MEDCoupling)
+
+if (TARGET PETSc AND TARGET MEDCoupling)
+ ExternalProject_Add_StepDependencies( MEDCoupling build PETSc )#PETSc doit être compilé avant MEDCoupling (car il contient hdf5)
+endif(TARGET PETSc AND TARGET MEDCoupling)
+
+####################
+# Final operations #
+####################
+
+# Paraview variables for env_SOLVERLAB.sh
+if( NOT DEFINED PARAVIEW_VERSION )
+ if( DEFINED PARAVIEW_ROOT_DIR)
+ set( PARAVIEW_INCLUDE_DIR ${PARAVIEW_ROOT_DIR}/include)
+ set( PARAVIEW_LIBRARIES_DIR ${PARAVIEW_ROOT_DIR}/lib)
+ else( DEFINED PARAVIEW_ROOT_DIR)
+ set( PARAVIEW_INCLUDE_DIR /usr/include/paraview/)
+ set( PARAVIEW_LIBRARIES_DIR /usr/lib/paraview/:/usr/lib64/paraview/)
+ endif( DEFINED PARAVIEW_ROOT_DIR)
+
+ #extraction of the paraview version"
+ IF ( EXISTS ${PARAVIEW_INCLUDE_DIR}/vtkPVConfig.h )
+ file(STRINGS ${PARAVIEW_INCLUDE_DIR}/vtkPVConfig.h vtkConfig)
+ ELSE ( EXISTS ${PARAVIEW_INCLUDE_DIR}/vtkPVConfig.h )
+ message(WARNING "Could not find ParaView configuration file vtkPVConfig.h in folder ${PARAVIEW_INCLUDE_DIR}. Postprocessing may not work")
+ ENDIF( EXISTS ${PARAVIEW_INCLUDE_DIR}/vtkPVConfig.h )
+
+ FOREACH(line ${vtkConfig})
+ string(FIND "${line}" "#define PARAVIEW_VERSION_FULL " pos)
+ IF(NOT ${pos} EQUAL -1)
+ string(LENGTH ${line} line_length)#length of the tarball
+ MATH(EXPR start_pv_version "${line_length}-6")#line ends with "x.y.z", that counts for 7 characters
+ string(SUBSTRING ${line} ${start_pv_version} 5 PARAVIEW_VERSION)
+ break()
+ ENDIF(NOT ${pos} EQUAL -1)
+ ENDFOREACH(line vtkConfig)
+endif(NOT DEFINED PARAVIEW_VERSION)
+
+message(STATUS "ParaView version is ${PARAVIEW_VERSION}" )
+IF ( ${PARAVIEW_VERSION} STRGREATER "5.6" OR ${PARAVIEW_VERSION} STREQUAL "5.6" )#Use python 3, use VERSION_GREATER_EQUAL if cmake >=3.7
+ SET(PYTHON2OR3 "3")
+ELSE ( ${PARAVIEW_VERSION} STRGREATER "5.6" OR ${PARAVIEW_VERSION} STREQUAL "5.6" )#Use python 2
+ SET(PYTHON2OR3 "2")
+ENDIF( ${PARAVIEW_VERSION} STRGREATER "5.6" OR ${PARAVIEW_VERSION} STREQUAL "5.6" )
+
+ set (PV_LIB_DIR /usr/lib/python${PYTHON2OR3}.7/dist-packages/paraview/:${PARAVIEW_LIBRARIES_DIR})
+ set (PV_PYTHON_DIR /usr/lib/python${PYTHON2OR3}.7/dist-packages/paraview/:/usr/lib64/paraview/site-packages/:/usr/lib64/paraview/site-packages/paraview/:/usr/lib64/paraview/site-packages/vtk/:/usr/lib64/paraview/python${PYTHON2OR3}.7/site-packages/:/usr/lib64/paraview/python${PYTHON2OR3}.7/site-packages/paraview/:/usr/lib64/paraview/python${PYTHON2OR3}.7/site-packages/vtkmodules:/usr/lib/paraview/site-packages/paraview:/usr/lib/paraview/site-packages/paraview/vtk)
+
+# Find python
+IF (${CMAKE_VERSION} VERSION_GREATER "3.12.0")
+ find_package(Python ${PYTHON2OR3} REQUIRED COMPONENTS Interpreter Development )
+ SET(PYTHON_EXECUTABLE ${Python_EXECUTABLE})
+ELSE (${CMAKE_VERSION} VERSION_GREATER "3.12.0")
+ find_package(PythonInterp ${PYTHON2OR3} REQUIRED )
+ find_package(PythonLibs ${PYTHON2OR3} REQUIRED )
+ set(Python_LIBRARIES ${PYTHON_LIBRARIES})
+ set(Python_INCLUDE_DIRS ${PYTHON_INCLUDE_DIRS})
+ set(Python_VERSION ${PYTHON_VERSION_STRING})
+ENDIF(${CMAKE_VERSION} VERSION_GREATER "3.12.0")
+
+message(STATUS "Python version is ${Python_VERSION}")
+find_package (SWIG 3.0 REQUIRED)
+
+if (SOLVERLAB_WITH_DOCUMENTATION) #
+ find_package (Doxygen) #
+ set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, doxygen, graphviz, mscgen")
+ set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, doxygen, graphviz, mscgen")
+ if (NOT DOXYGEN_FOUND)
+ message (FATAL_ERROR "Doxygen is needed to build the documentation. Please install it correctly.")
+ endif(NOT DOXYGEN_FOUND)
+endif()
+if (SOLVERLAB_WITH_TESTS) #
+ find_package (CPPUNIT REQUIRED)
+endif()
+find_package (XDR REQUIRED)
+
+# Enter subdirectories
+set( CMAKE_INSTALL_PREFIX ${CMAKE_INSTALL_PREFIX}/cdmath)
+add_subdirectory (CDMATH)
+if(SOLVERLAB_WITH_COREFLOWS)
+ set( CMAKE_INSTALL_PREFIX ${CMAKE_INSTALL_PREFIX}/../coreflows)
+ add_subdirectory (CoreFlows)
+endif(SOLVERLAB_WITH_COREFLOWS)
+
+set( CMAKE_INSTALL_PREFIX ${CMAKE_INSTALL_PREFIX}/../)
+# Configuration file
+configure_file(
+ ${PROJECT_SOURCE_DIR}/env_SOLVERLAB.sh
+ ${CMAKE_INSTALL_PREFIX}/env_SOLVERLAB.sh
+ @ONLY
+)
+
+
set (COREFLOWS_VERSION_MAJOR 0)
set (COREFLOWS_VERSION_MINOR 1)
-option (CMAKE_BUILD_TYPE "Debug or Release compilation" Release)
-option (COREFLOWS_WITH_DOCUMENTATION "Generate documentation for CoreFlows use." OFF)
-option (COREFLOWS_WITH_PYTHON "Compile Python interface for COREFLOWS." OFF)
+option (COREFLOWS_WITH_DOCUMENTATION "Generate documentation for CoreFlows use." ON)
+option (COREFLOWS_WITH_PYTHON "Compile Python interface for COREFLOWS." ON)
option (COREFLOWS_WITH_GUI "Compile Graphic user Interface for COREFLOWS." OFF)
option (COREFLOWS_WITH_PACKAGE "Generate RPM, Debian and tarball packages." OFF)
#
#----------------------------------------------------------------------------------------------------------#
-list (APPEND CMAKE_MODULE_PATH "${CoreFlows_SOURCE_DIR}/cmake_files") #
-
-# CDMATH ---------------------------------------------------------------------------------------------------#
-find_package (CDMATH REQUIRED) #
-#-----------------------------------------------------------------------------------------------------------#
-
-
-# PETSC ----------------------------------------------------------------------------------------------------#
-message ( STATUS "Checking variable PETSC_DIR : " $ENV{PETSC_DIR} )
-
-if ( NOT PETSC_DIR AND NOT DEFINED ENV{PETSC_DIR} AND IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so") #Case fedora/redhat system install
- message ( STATUS "PETSC includes found in /usr/include/petsc/" )
- message ( STATUS "PETSC library found in /usr/lib64" )
- set(PETSC_DIR /usr/)
- set(PETSC_ARCH lib64)
- set(PETSC_INCLUDES /usr/include/petsc /usr/include/petsc/petsc/mpiuni)
- set(PETSC_INCLUDES_PATH /usr/include/petsc:/usr/include/petsc/petsc/mpiuni)
- set(PETSC_LIBRARIES /usr/lib64/libpetsc.so)
- set(PETSC_VERSION "3.7") #3.7 for fedora 25/26 , 3.9 for fedora 29 , 3.10 for fedora 30, , 3.12 for fedora 32
- set(CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, petsc-devel (>= 3.4)") # This is not fully working yet.
-
- #Define and search slepc variables
- if ( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
- message( STATUS "SLEPc includes found in /usr/include/slepc/" )
- message( STATUS "SLEPc library found in /usr/lib64/slepc/" )
- set(SLEPC_DIR /usr/)
- set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
- set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
- set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, slepc-devel (>= 3.4)") # This is not fully working yet.
- else ( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
- message( FATAL_ERROR "SLEPc not found in the system" )
- endif( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
-
-#elseif ( IS_DIRECTORY "/usr/lib/petsc/") #Case ubuntu/debian system install
-# message ( STATUS "PETSC found in /usr/lib/petsc/" )
-# set(PETSC_DIR /usr/lib/petsc/)
-# set(PETSC_ARCH )
-# find_package (PETSc 3.4 REQUIRED)
-# petsc_get_version ()
-# set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, petsc-dev (>= 3.4)") # This is not fully working yet.
-
-#elseif ( IS_DIRECTORY "/usr/local/lib/python2.7/dist-packages/petsc") #Case ubuntu/debian system pip install
-# message ( STATUS "PETSC found in /usr/local/lib/python2.7/dist-packages/petsc" )
-# set(PETSC_DIR /usr/local/lib/python2.7/dist-packages/petsc/)
-# set(PETSC_ARCH lib)
-# set(PETSC_INCLUDES $PETSC_DIR/include /usr/include/openmpi)
-# set(PETSC_INCLUDES_PATH $PETSC_DIR/include:/usr/include/openmpi)
-# set(PETSC_LIBRARIES $PETSC_DIR/lib/libpetsc.so)
-# set(PETSC_VERSION "3.8") #value for Ubuntu 16.04
-
-else ( NOT PETSC_DIR AND NOT DEFINED ENV{PETSC_DIR} AND IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so")
- if(NOT PETSC_DIR)
- set(PETSC_DIR $ENV{PETSC_DIR})
- endif(NOT PETSC_DIR)
-
- find_package (PETSc 3.4 REQUIRED)
- petsc_get_version ()
- string(REPLACE ";" ":" PETSC_INCLUDES_PATH "${PETSC_INCLUDES}")# use colon instead of semicolon in environment file env_CoreFlows.sh
-
- #Define and search slepc variables
- if ( NOT SLEPC_DIR )
- if ( DEFINED ENV{SLEPC_DIR} )
- set(SLEPC_DIR $ENV{SLEPC_DIR})
- else ( DEFINED ENV{SLEPC_DIR} )
- set(SLEPC_DIR ${PETSC_DIR}/${PETSC_ARCH})
- endif( DEFINED ENV{SLEPC_DIR} )
- endif( NOT SLEPC_DIR)
-
- message ( STATUS "Checking variable SLEPC_DIR" )
- if ( IS_DIRECTORY ${SLEPC_DIR}/include AND EXISTS ${SLEPC_DIR}/lib/libslepc.so)
- set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
- set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
- message( STATUS "SLEPc found at ${SLEPC_DIR}" )
- else()
- message( FATAL_ERROR "SLEPc not found at ${SLEPC_DIR}" )
- endif()
-
-endif( NOT PETSC_DIR AND NOT DEFINED ENV{PETSC_DIR} AND IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so")
-
-if (${PETSC_VERSION} VERSION_GREATER 3.5)
- add_definitions(-DPETSC_VERSION_GREATER_3_5)
-endif ()
-
-#-----------------------------------------------------------------------------------------------------------#
-
-
-
# Swig interface -------------------------------------------------------------------------------------------#
#
if (COREFLOWS_WITH_PYTHON) #
- find_package (PYTHON REQUIRED) #
- find_package (SWIG 3.0 REQUIRED)
-
- set (PV_LIB_DIR /usr/lib/python2.7/dist-packages/:/usr/lib/python3.7/dist-packages/:/usr/lib64/paraview/)
- set (PV_PYTHON_DIR /usr/lib/python2.7/dist-packages:/usr/lib64/paraview/site-packages/:/usr/lib64/paraview/site-packages/paraview/:/usr/lib64/paraview/site-packages/vtk/:/usr/lib64/paraview/python2.7/site-packages/:/usr/lib64/paraview/python2.7/site-packages/paraview/:/usr/lib64/paraview/python2.7/site-packages/vtkmodules:/usr/lib64/paraview/python3.7/site-packages/:/usr/lib64/paraview/python3.7/site-packages/paraview/:/usr/lib64/paraview/python3.7/site-packages/vtkmodules)
set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, python-dev, python-numpy, swig") #
set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, python-devel, numpy, swig") #
set (CoreFlows_SWIG_DIR ${CoreFlows_SOURCE_DIR}/swig) #
set( CoreFlows_INCLUDES
${CDMATH_INCLUDES} #
- ${MED_INCLUDES} #
- ${MEDCOUPLING_INCLUDES} #
${PETSC_INCLUDES} #
${CoreFlows_SRC}/inc #
) #
# Documentation --------------------------------------------------------------------------------------------#
#
if (COREFLOWS_WITH_DOCUMENTATION) #
- find_package (Doxygen) #
- set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, doxygen, graphviz, mscgen") #
- set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, doxygen, graphviz, mscgen") #
- if (NOT DOXYGEN_FOUND) #
- message (FATAL_ERROR "Doxygen is needed to build the documentation. Please install it correctly.") #
- endif (NOT DOXYGEN_FOUND) #
configure_file (Doxyfile.in ${PROJECT_BINARY_DIR}/Doxyfile @ONLY IMMEDIATE) #
FILE(GLOB_RECURSE CoreFlows_Documentation ${CoreFlows_SOURCE_DIR}/Documentation *.dox) #
SET(Documentation_SRC #
${PROJECT_BINARY_DIR}/Doxyfile #
${CoreFlows_Documentation} #
) #
- add_custom_target (doc COMMAND ${DOXYGEN_EXECUTABLE} #
+ add_custom_target (docCoreFlows COMMAND ${DOXYGEN_EXECUTABLE} #
SOURCES ${PROJECT_BINARY_DIR}/Doxyfile) #
install (DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/doc/html DESTINATION share/doc/CoreFlows OPTIONAL) #
INSTALL(FILES ${CoreFlows_SOURCE_DIR}/Documentation/CoreFlows.pdf DESTINATION share/doc/CoreFlows OPTIONAL) #
# Packaging
if (COREFLOWS_WITH_PACKAGE)
- include (CPackLists.txt)
+ include (${CoreFlows_SOURCE_DIR}/CPackLists.txt)
endif ()
set (CPACK_PACKAGE_DESCRIPTION_SUMMARY "CFD simulation environment")
set (CPACK_PACKAGE_VENDOR "CEA Saclay")
-set (CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_SOURCE_DIR}/README.md")
+set (CPACK_PACKAGE_DESCRIPTION_FILE "${CDMATH_SOURCE_DIR}/README.md")
set (CPACK_PACKAGE_VERSION_MAJOR "${COREFLOWS_VERSION_MAJOR}")
set (CPACK_PACKAGE_VERSION_MINOR "${COREFLOWS_VERSION_MINOR}")
+++ /dev/null
-# Copyright (c) 2012 - 2015, Lars Bilke
-# All rights reserved.
-#
-# Redistribution and use in source and binary forms, with or without modification,
-# are permitted provided that the following conditions are met:
-#
-# 1. Redistributions of source code must retain the above copyright notice, this
-# list of conditions and the following disclaimer.
-#
-# 2. Redistributions in binary form must reproduce the above copyright notice,
-# this list of conditions and the following disclaimer in the documentation
-# and/or other materials provided with the distribution.
-#
-# 3. Neither the name of the copyright holder nor the names of its contributors
-# may be used to endorse or promote products derived from this software without
-# specific prior written permission.
-#
-# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
-# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-# ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-#
-#
-#
-# 2012-01-31, Lars Bilke
-# - Enable Code Coverage
-#
-# 2013-09-17, Joakim Söderberg
-# - Added support for Clang.
-# - Some additional usage instructions.
-#
-# USAGE:
-
-# 0. (Mac only) If you use Xcode 5.1 make sure to patch geninfo as described here:
-# http://stackoverflow.com/a/22404544/80480
-#
-# 1. Copy this file into your cmake modules path.
-#
-# 2. Add the following line to your CMakeLists.txt:
-# INCLUDE(CodeCoverage)
-#
-# 3. Set compiler flags to turn off optimization and enable coverage:
-# SET(CMAKE_CXX_FLAGS "-g -O0 -fprofile-arcs -ftest-coverage")
-# SET(CMAKE_C_FLAGS "-g -O0 -fprofile-arcs -ftest-coverage")
-#
-# 3. Use the function SETUP_TARGET_FOR_COVERAGE to create a custom make target
-# which runs your test executable and produces a lcov code coverage report:
-# Example:
-# SETUP_TARGET_FOR_COVERAGE(
-# my_coverage_target # Name for custom target.
-# test_driver # Name of the test driver executable that runs the tests.
-# # NOTE! This should always have a ZERO as exit code
-# # otherwise the coverage generation will not complete.
-# coverage # Name of output directory.
-# )
-#
-# 4. Build a Debug build:
-# cmake -DCMAKE_BUILD_TYPE=Debug ..
-# make
-# make my_coverage_target
-#
-#
-
-# Check prereqs
-FIND_PROGRAM( GCOV_PATH gcov )
-FIND_PROGRAM( LCOV_PATH lcov )
-FIND_PROGRAM( GENHTML_PATH genhtml )
-FIND_PROGRAM( GCOVR_PATH gcovr PATHS ${CMAKE_SOURCE_DIR}/tests)
-
-IF(NOT GCOV_PATH)
- MESSAGE(FATAL_ERROR "gcov not found! Aborting...")
-ENDIF() # NOT GCOV_PATH
-
-IF(NOT CMAKE_COMPILER_IS_GNUCXX)
- # Clang version 3.0.0 and greater now supports gcov as well.
- MESSAGE(WARNING "Compiler is not GNU gcc! Clang Version 3.0.0 and greater supports gcov as well, but older versions don't.")
-
- IF(NOT "${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
- MESSAGE(FATAL_ERROR "Compiler is not GNU gcc! Aborting...")
- ENDIF()
-ENDIF() # NOT CMAKE_COMPILER_IS_GNUCXX
-
-SET(CMAKE_CXX_FLAGS_COVERAGE
- "-g -O0 --coverage -fprofile-arcs -ftest-coverage"
- CACHE STRING "Flags used by the C++ compiler during coverage builds."
- FORCE )
-SET(CMAKE_C_FLAGS_COVERAGE
- "-g -O0 --coverage -fprofile-arcs -ftest-coverage"
- CACHE STRING "Flags used by the C compiler during coverage builds."
- FORCE )
-SET(CMAKE_EXE_LINKER_FLAGS_COVERAGE
- ""
- CACHE STRING "Flags used for linking binaries during coverage builds."
- FORCE )
-SET(CMAKE_SHARED_LINKER_FLAGS_COVERAGE
- ""
- CACHE STRING "Flags used by the shared libraries linker during coverage builds."
- FORCE )
-MARK_AS_ADVANCED(
- CMAKE_CXX_FLAGS_COVERAGE
- CMAKE_C_FLAGS_COVERAGE
- CMAKE_EXE_LINKER_FLAGS_COVERAGE
- CMAKE_SHARED_LINKER_FLAGS_COVERAGE )
-
-IF ( NOT (CMAKE_BUILD_TYPE STREQUAL "Debug" OR CMAKE_BUILD_TYPE STREQUAL "Coverage"))
- MESSAGE( WARNING "Code coverage results with an optimized (non-Debug) build may be misleading" )
-ENDIF() # NOT CMAKE_BUILD_TYPE STREQUAL "Debug"
-
-
-# Param _targetname The name of new the custom make target
-# Param _testrunner The name of the target which runs the tests.
-# MUST return ZERO always, even on errors.
-# If not, no coverage report will be created!
-# Param _outputname lcov output is generated as _outputname.info
-# HTML report is generated in _outputname/index.html
-# Optional fourth parameter is passed as arguments to _testrunner
-# Pass them in list form, e.g.: "-j;2" for -j 2
-FUNCTION(SETUP_TARGET_FOR_COVERAGE _targetname _testrunner _outputname)
-
- IF(NOT LCOV_PATH)
- MESSAGE(FATAL_ERROR "lcov not found! Aborting...")
- ENDIF() # NOT LCOV_PATH
-
- IF(NOT GENHTML_PATH)
- MESSAGE(FATAL_ERROR "genhtml not found! Aborting...")
- ENDIF() # NOT GENHTML_PATH
-
- # Setup target
- ADD_CUSTOM_TARGET(${_targetname}
-
- # Cleanup lcov
- ${LCOV_PATH} --directory . --zerocounters
-
- # Run tests
- COMMAND ${_testrunner} ${ARGV3}
-
- # Capturing lcov counters and generating report
- COMMAND ${LCOV_PATH} --directory . --capture --output-file ${_outputname}.info
- COMMAND ${LCOV_PATH} --remove ${_outputname}.info 'tests/*' '/usr/*' --output-file ${_outputname}.info.cleaned
- COMMAND ${GENHTML_PATH} -o ${_outputname} ${_outputname}.info.cleaned
- COMMAND ${CMAKE_COMMAND} -E remove ${_outputname}.info ${_outputname}.info.cleaned
-
- WORKING_DIRECTORY ${CMAKE_BINARY_DIR}
- COMMENT "Resetting code coverage counters to zero.\nProcessing code coverage counters and generating report."
- )
-
- # Show info where to find the report
- ADD_CUSTOM_COMMAND(TARGET ${_targetname} POST_BUILD
- COMMAND ;
- COMMENT "Open ./${_outputname}/index.html in your browser to view the coverage report."
- )
-
-ENDFUNCTION() # SETUP_TARGET_FOR_COVERAGE
-
-# Param _targetname The name of new the custom make target
-# Param _testrunner The name of the target which runs the tests
-# Param _outputname cobertura output is generated as _outputname.xml
-# Optional fourth parameter is passed as arguments to _testrunner
-# Pass them in list form, e.g.: "-j;2" for -j 2
-FUNCTION(SETUP_TARGET_FOR_COVERAGE_COBERTURA _targetname _testrunner _outputname)
-
- IF(NOT PYTHON_EXECUTABLE)
- MESSAGE(FATAL_ERROR "Python not found! Aborting...")
- ENDIF() # NOT PYTHON_EXECUTABLE
-
- IF(NOT GCOVR_PATH)
- MESSAGE(FATAL_ERROR "gcovr not found! Aborting...")
- ENDIF() # NOT GCOVR_PATH
-
- ADD_CUSTOM_TARGET(${_targetname}
-
- # Run tests
- ${_testrunner} ${ARGV3}
-
- # Running gcovr
- COMMAND ${GCOVR_PATH} -x -r ${CMAKE_SOURCE_DIR} -e '${CMAKE_SOURCE_DIR}/tests/' -o ${_outputname}.xml
- WORKING_DIRECTORY ${CMAKE_BINARY_DIR}
- COMMENT "Running gcovr to produce Cobertura code coverage report."
- )
-
- # Show info where to find the report
- ADD_CUSTOM_COMMAND(TARGET ${_targetname} POST_BUILD
- COMMAND ;
- COMMENT "Cobertura code coverage report saved in ${_outputname}.xml."
- )
-ENDFUNCTION() # SETUP_TARGET_FOR_COVERAGE_COBERTURA
+++ /dev/null
-##Copyright (C) johnfettig.
-##All rights reserved.
-##
-##Redistribution and use in source and binary forms, with or without modification,
-##are permitted provided that the following conditions are met:
-##
-##* Redistributions of source code must retain the above copyright notice, this
-## list of conditions and the following disclaimer.
-##
-##* Redistributions in binary form must reproduce the above copyright notice, this
-## list of conditions and the following disclaimer in the documentation and/or
-## other materials provided with the distribution.
-##
-##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-##ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-##WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
-##ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-##(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-##LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-##ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-##(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-##SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-# CorrectWindowsPaths - this module defines one macro
-#
-# CONVERT_CYGWIN_PATH( PATH )
-# This uses the command cygpath (provided by cygwin) to convert
-# unix-style paths into paths useable by cmake on windows
-
-macro (CONVERT_CYGWIN_PATH _path)
- if (WIN32)
- EXECUTE_PROCESS(COMMAND cygpath.exe -m ${${_path}}
- OUTPUT_VARIABLE ${_path})
- string (STRIP ${${_path}} ${_path})
- endif (WIN32)
-endmacro (CONVERT_CYGWIN_PATH)
-
+++ /dev/null
-##Copyright (C) arthurtalpaert.
-##All rights reserved.
-##
-##Redistribution and use in source and binary forms, with or without modification,
-##are permitted provided that the following conditions are met:
-##
-##* Redistributions of source code must retain the above copyright notice, this
-## list of conditions and the following disclaimer.
-##
-##* Redistributions in binary form must reproduce the above copyright notice, this
-## list of conditions and the following disclaimer in the documentation and/or
-## other materials provided with the distribution.
-##
-##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-##ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-##WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
-##ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-##(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-##LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-##ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-##(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-##SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-# - Try to find CDMATH
-# Once done this will define
-#
-# CDMATH_FOUND - system has CDMATH
-# CDMATH_INCLUDES - the CDMATH include directories
-# CDMATH_LIBRARIES - Link these to use CDMATH
-#
-# Usage:
-# find_package(CDMATH)
-#
-# Setting these changes the behavior of the search:
-# CDMATH_DIR - directory in which CDMATH resides
-#
-# Redistribution and use is allowed according to the terms of the BSD license.
-# For details see the accompanying COPYING-CMAKE-SCRIPTS file.
-#
-
-find_path (CDMATH_DIR include/CdmathException.hxx
- HINTS ENV CDMATH_DIR
- PATHS
- /usr
- $ENV{HOME}/cdmath
- $ENV{HOME}/workspace/cdmath_install
- DOC "CDMATH Directory")
-message (STATUS "Found CDMATH: ${CDMATH_DIR}")
-
-# Include directories
-# This sets the variable ${CDMATH_INCLUDES}.
-set(CDMATH_INCLUDES ${CDMATH_DIR}/include)
-if (NOT (IS_DIRECTORY ${CDMATH_INCLUDES}) )
- message (SEND_ERROR "CDMATH_INCLUDES can not be used, ${CDMATH_INCLUDES} does not exist.")
-endif ()
-set(MED_INCLUDES $ENV{MEDFILE_INCLUDE_DIRS})
-if (NOT (IS_DIRECTORY ${MED_INCLUDES}) )
- message (SEND_ERROR "MED_INCLUDES can not be used, ${MED_INCLUDES} does not exist.")
-endif ()
-set(MEDCOUPLING_INCLUDES $ENV{MEDCOUPLING_INCLUDE_DIR})
-if (NOT (IS_DIRECTORY ${MEDCOUPLING_INCLUDES}) )
- message (SEND_ERROR "MEDCOUPLING_INCLUDES can not be used, ${MEDCOUPLING_INCLUDES} does not exist.")
-endif ()
-
-# CDMATH libraries against which to link
-# This sets the variable ${CDMATH_LIBRARIES}.
-set(CDMATH_LIBDIR ${CDMATH_DIR}/lib)
-if ( NOT (IS_DIRECTORY ${CDMATH_LIBDIR}) )
- message (SEND_ERROR "CDMATH_LIBDIR can not be used, ${CDMATH_LIBDIR} does not exist.")
-endif ()
-find_library (CDMATHBASE_LIB NAMES base PATHS ${CDMATH_LIBDIR})
-find_library (CDMATHMESH_LIB NAMES mesh PATHS ${CDMATH_LIBDIR})
-find_library (MEDC_LIB NAMES medC PATHS $ENV{MEDFILE_LIBRARIES})
-find_library (MEDLOADER_LIB NAMES medloader PATHS $ENV{MEDCOUPLING_LIBRARIES})
-find_library (MEDCOUPLING_LIB NAMES medcoupling PATHS $ENV{MEDCOUPLING_LIBRARIES})
-find_library (CDMATHLINEARSOLVER_LIB NAMES linearsolver PATHS ${CDMATH_LIBDIR})
-set (CDMATH_LIBRARIES
- ${MEDC_LIB}
- ${MEDLOADER_LIB}
- ${MEDCOUPLING_LIB}
- ${CDMATHBASE_LIB}
- ${CDMATHMESH_LIB}
- ${CDMATHLINEARSOLVER_LIB}
- )
+++ /dev/null
-# - Try to find PETSc
-# Once done this will define
-#
-# PETSC_FOUND - system has PETSc
-# PETSC_INCLUDES - the PETSc include directories
-# PETSC_LIBRARIES - Link these to use PETSc
-# PETSC_COMPILER - Compiler used by PETSc, helpful to find a compatible MPI
-# PETSC_DEFINITIONS - Compiler switches for using PETSc
-# PETSC_MPIEXEC - Executable for running MPI programs
-# PETSC_VERSION - Version string (MAJOR.MINOR.SUBMINOR)
-#
-# Usage:
-# find_package(PETSc COMPONENTS CXX) - required if build --with-clanguage=C++ --with-c-support=0
-# find_package(PETSc COMPONENTS C) - standard behavior of checking build using a C compiler
-# find_package(PETSc) - same as above
-#
-# Setting these changes the behavior of the search
-# PETSC_DIR - directory in which PETSc resides
-# PETSC_ARCH - build architecture
-#
-# Redistribution and use is allowed according to the terms of the BSD license.
-# For details see the accompanying COPYING-CMAKE-SCRIPTS file.
-#
-
-set(PETSC_VALID_COMPONENTS
- C
- CXX)
-
-if(NOT PETSc_FIND_COMPONENTS)
- set(PETSC_LANGUAGE_BINDINGS "C")
-else()
- # Right now, this is designed for compatability with the --with-clanguage option, so
- # only allow one item in the components list.
- list(LENGTH ${PETSc_FIND_COMPONENTS} components_length)
- if(${components_length} GREATER 1)
- message(FATAL_ERROR "Only one component for PETSc is allowed to be specified")
- endif()
- # This is a stub for allowing multiple components should that time ever come. Perhaps
- # to also test Fortran bindings?
- foreach(component ${PETSc_FIND_COMPONENTS})
- list(FIND PETSC_VALID_COMPONENTS ${component} component_location)
- if(${component_location} EQUAL -1)
- message(FATAL_ERROR "\"${component}\" is not a valid PETSc component.")
- else()
- list(APPEND PETSC_LANGUAGE_BINDINGS ${component})
- endif()
- endforeach()
-endif()
-
-function (petsc_get_version)
- if (EXISTS "${PETSC_DIR}/petscversion.h" OR EXISTS "${PETSC_DIR}/include/petscversion.h" OR EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h")
- if (EXISTS "${PETSC_DIR}/include/petscversion.h")
- file (STRINGS "${PETSC_DIR}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
- elseif( EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h" )
- file (STRINGS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
- else()
- file (STRINGS "${PETSC_DIR}/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
- endif()
- foreach (line ${vstrings})
- string (REGEX REPLACE " +" ";" fields ${line}) # break line into three fields (the first is always "#define")
- list (GET fields 1 var)
- list (GET fields 2 val)
- set (${var} ${val} PARENT_SCOPE)
- set (${var} ${val}) # Also in local scope so we have access below
- endforeach ()
-
- if (PETSC_VERSION_RELEASE)
- set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}p${PETSC_VERSION_PATCH}" PARENT_SCOPE)
- else ()
- # make dev version compare higher than any patch level of a released version
- set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}.99" PARENT_SCOPE)
- endif ()
- else ()
- message (SEND_ERROR "PETSC_DIR can not be used, file ${PETSC_DIR}/include/petscversion.h does not exist")
- endif ()
-endfunction ()
-
-find_path (PETSC_DIR include/petsc.h
- HINTS ENV PETSC_DIR
- PATHS
- #RedHat paths
- /usr/include/petsc
- # Debian paths
- /usr/lib/petscdir/3.12.4 /usr/lib/petscdir/3.12 #Ubuntu 20.04
- /usr/lib/petscdir/3.7.6 /usr/lib/petscdir/3.7 #Ubuntu 18.04
- /usr/lib/petscdir/3.6.2 /usr/lib/petscdir/3.6 #Ubuntu 16.04
- /usr/lib/petscdir/3.5.1 /usr/lib/petscdir/3.5
- /usr/lib/petscdir/3.4.2 /usr/lib/petscdir/3.4
- /usr/lib/petscdir/3.3 /usr/lib/petscdir/3.2 /usr/lib/petscdir/3.1
- /usr/lib/petscdir/3.0.0 /usr/lib/petscdir/2.3.3 /usr/lib/petscdir/2.3.2
- # MacPorts path
- /opt/local/lib/petsc
- $ENV{HOME}/petsc
- DOC "PETSc Directory")
-
-find_program (MAKE_EXECUTABLE NAMES make gmake)
-
-if (PETSC_DIR AND NOT PETSC_ARCH)
- set (_petsc_arches
- $ENV{PETSC_ARCH} # If set, use environment variable first
- linux-gnu-c-debug linux-gnu-c-opt # old Debian defaults (petsc compilation)
- arch-linux-c-opt or arch-linux-c-debug # new Debian defaults (petsc compilation)
- x86_64-linux-gnu-real i686-linux-gnu-real # Debian defaults (petsc system installation)
- arch-linux2-c-opt or arch-linux2-c-debug # old RedHat defaults (petsc compilation)
- x86_64-redhat-linux-gnu i686-redhat-linux-gnu # RedHat defaults (petsc apt installation)
- x86_64-unknown-linux-gnu i386-unknown-linux-gnu)
- set (petscconf "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
- foreach (arch ${_petsc_arches})
- if (NOT PETSC_ARCH)
- find_path (petscconf petscconf.h
- HINTS ${PETSC_DIR}
- PATH_SUFFIXES ${arch}/include bmake/${arch}
- NO_DEFAULT_PATH)
- if (petscconf)
- set (PETSC_ARCH "${arch}" CACHE STRING "PETSc build architecture")
- endif (petscconf)
- endif (NOT PETSC_ARCH)
- endforeach (arch)
- set (petscconf "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
-endif (PETSC_DIR AND NOT PETSC_ARCH)
-
-set (petsc_slaves LIBRARIES_SYS LIBRARIES_VEC LIBRARIES_MAT LIBRARIES_DM LIBRARIES_KSP LIBRARIES_SNES LIBRARIES_TS
- INCLUDE_DIR INCLUDE_CONF)
-include (FindPackageMultipass)
-find_package_multipass (PETSc petsc_config_current
- STATES DIR ARCH
- DEPENDENTS INCLUDES LIBRARIES COMPILER MPIEXEC ${petsc_slaves})
-
-# Determine whether the PETSc layout is old-style (through 2.3.3) or
-# new-style (>= 3.0.0)
-if (EXISTS "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/petscvariables") # > 3.5
- set (petsc_conf_rules "${PETSC_DIR}/lib/petsc/conf/rules")
- set (petsc_conf_variables "${PETSC_DIR}/lib/petsc/conf/variables")
-elseif (EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscconf.h") # > 2.3.3
- set (petsc_conf_rules "${PETSC_DIR}/conf/rules")
- set (petsc_conf_variables "${PETSC_DIR}/conf/variables")
-elseif (EXISTS "${PETSC_DIR}/bmake/${PETSC_ARCH}/petscconf.h") # <= 2.3.3
- set (petsc_conf_rules "${PETSC_DIR}/bmake/common/rules")
- set (petsc_conf_variables "${PETSC_DIR}/bmake/common/variables")
-elseif (PETSC_DIR)
- message (SEND_ERROR "The pair PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} do not specify a valid PETSc installation")
-endif ()
-
-if (petsc_conf_rules AND petsc_conf_variables AND NOT petsc_config_current)
- petsc_get_version()
-
- # Put variables into environment since they are needed to get
- # configuration (petscvariables) in the PETSc makefile
- set (ENV{PETSC_DIR} "${PETSC_DIR}")
- set (ENV{PETSC_ARCH} "${PETSC_ARCH}")
-
- # A temporary makefile to probe the PETSc configuration
- set (petsc_config_makefile "${PROJECT_BINARY_DIR}/Makefile.petsc")
- file (WRITE "${petsc_config_makefile}"
-"## This file was autogenerated by FindPETSc.cmake
-# PETSC_DIR = ${PETSC_DIR}
-# PETSC_ARCH = ${PETSC_ARCH}
-include ${petsc_conf_rules}
-include ${petsc_conf_variables}
-show :
-\t-@echo -n \${\${VARIABLE}}
-")
-
- macro (PETSC_GET_VARIABLE name var)
- set (${var} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
- execute_process (COMMAND ${MAKE_EXECUTABLE} --no-print-directory -f ${petsc_config_makefile} show VARIABLE=${name}
- OUTPUT_VARIABLE ${var}
- RESULT_VARIABLE petsc_return)
- endmacro (PETSC_GET_VARIABLE)
- petsc_get_variable (PETSC_LIB_DIR petsc_lib_dir)
- petsc_get_variable (PETSC_EXTERNAL_LIB_BASIC petsc_libs_external)
- petsc_get_variable (PETSC_CCPPFLAGS petsc_cpp_line)
- petsc_get_variable (PETSC_INCLUDE petsc_include)
- petsc_get_variable (PCC petsc_cc)
- petsc_get_variable (PCC_FLAGS petsc_cc_flags)
- petsc_get_variable (MPIEXEC petsc_mpiexec)
- # We are done with the temporary Makefile, calling PETSC_GET_VARIABLE after this point is invalid!
- file (REMOVE ${petsc_config_makefile})
-
- include (ResolveCompilerPaths)
- # Extract include paths and libraries from compile command line
- resolve_includes (petsc_includes_all "${petsc_cpp_line}")
-
- #on windows we need to make sure we're linking against the right
- #runtime library
- if (WIN32)
- if (petsc_cc_flags MATCHES "-MT")
- set(using_md False)
- foreach(flag_var
- CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE
- CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_RELWITHDEBINFO
- CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE
- CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_RELWITHDEBINFO)
- if(${flag_var} MATCHES "/MD")
- set(using_md True)
- endif(${flag_var} MATCHES "/MD")
- endforeach(flag_var)
- if(${using_md} MATCHES "True")
- message(WARNING "PETSc was built with /MT, but /MD is currently set.
- See http://www.cmake.org/Wiki/CMake_FAQ#How_can_I_build_my_MSVC_application_with_a_static_runtime.3F")
- endif(${using_md} MATCHES "True")
- endif (petsc_cc_flags MATCHES "-MT")
- endif (WIN32)
-
- include (CorrectWindowsPaths)
- convert_cygwin_path(petsc_lib_dir)
- message (STATUS "petsc_lib_dir ${petsc_lib_dir}")
-
- macro (PETSC_FIND_LIBRARY suffix name)
- set (PETSC_LIBRARY_${suffix} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE) # Clear any stale value, if we got here, we need to find it again
- if (WIN32)
- set (libname lib${name}) #windows expects "libfoo", linux expects "foo"
- else (WIN32)
- set (libname ${name})
- endif (WIN32)
- find_library (PETSC_LIBRARY_${suffix} NAMES ${libname} HINTS ${petsc_lib_dir} NO_DEFAULT_PATH)
- set (PETSC_LIBRARIES_${suffix} "${PETSC_LIBRARY_${suffix}}")
- mark_as_advanced (PETSC_LIBRARY_${suffix})
- endmacro (PETSC_FIND_LIBRARY suffix name)
-
- # Look for petscvec first, if it doesn't exist, we must be using single-library
- petsc_find_library (VEC petscvec)
- if (PETSC_LIBRARY_VEC)
- petsc_find_library (SYS "petscsys;petsc") # libpetscsys is called libpetsc prior to 3.1 (when single-library was introduced)
- petsc_find_library (MAT petscmat)
- petsc_find_library (DM petscdm)
- petsc_find_library (KSP petscksp)
- petsc_find_library (SNES petscsnes)
- petsc_find_library (TS petscts)
- macro (PETSC_JOIN libs deps)
- list (APPEND PETSC_LIBRARIES_${libs} ${PETSC_LIBRARIES_${deps}})
- endmacro (PETSC_JOIN libs deps)
- petsc_join (VEC SYS)
- petsc_join (MAT VEC)
- petsc_join (DM MAT)
- petsc_join (KSP DM)
- petsc_join (SNES KSP)
- petsc_join (TS SNES)
- petsc_join (ALL TS)
- else ()
- set (PETSC_LIBRARY_VEC "NOTFOUND" CACHE INTERNAL "Cleared" FORCE) # There is no libpetscvec
- petsc_find_library (SINGLE petsc) #check existence of libpetsc.so
- if (NOT PETSC_LIBRARY_SINGLE)
- petsc_find_library (SINGLE petsc_real) #check existence of libpetsc_real.so
- endif()
- if (NOT PETSC_LIBRARY_SINGLE)
- petsc_find_library (SINGLE petsc_complex) #check existence of libpetsc_complex.so
- endif()
- foreach (pkg SYS VEC MAT DM KSP SNES TS ALL)
- set (PETSC_LIBRARIES_${pkg} "${PETSC_LIBRARY_SINGLE}")
- endforeach ()
- endif ()
- if (PETSC_LIBRARY_TS)
- message (STATUS "Recognized PETSc install with separate libraries for each package")
- else ()
- message (STATUS "Recognized PETSc install with single library for all packages")
- endif ()
-
- include(Check${PETSC_LANGUAGE_BINDINGS}SourceRuns)
- macro (PETSC_TEST_RUNS includes libraries runs)
- if(${PETSC_LANGUAGE_BINDINGS} STREQUAL "C")
- set(_PETSC_ERR_FUNC "CHKERRQ(ierr)")
- elseif(${PETSC_LANGUAGE_BINDINGS} STREQUAL "CXX")
- set(_PETSC_ERR_FUNC "CHKERRXX(ierr)")
- endif()
- if (PETSC_VERSION VERSION_GREATER 3.1)
- set (_PETSC_TSDestroy "TSDestroy(&ts)")
- else ()
- set (_PETSC_TSDestroy "TSDestroy(ts)")
- endif ()
-
- set(_PETSC_TEST_SOURCE "
-static const char help[] = \"PETSc test program.\";
-#include <petscts.h>
-int main(int argc,char *argv[]) {
- PetscErrorCode ierr;
- TS ts;
-
- ierr = PetscInitialize(&argc,&argv,0,help);${_PETSC_ERR_FUNC};
- ierr = TSCreate(PETSC_COMM_WORLD,&ts);${_PETSC_ERR_FUNC};
- ierr = TSSetFromOptions(ts);${_PETSC_ERR_FUNC};
- ierr = ${_PETSC_TSDestroy};${_PETSC_ERR_FUNC};
- ierr = PetscFinalize();${_PETSC_ERR_FUNC};
- return 0;
-}
-")
- multipass_source_runs ("${includes}" "${libraries}" "${_PETSC_TEST_SOURCE}" ${runs} "${PETSC_LANGUAGE_BINDINGS}")
- if (${${runs}})
- set (PETSC_EXECUTABLE_RUNS "YES" CACHE BOOL
- "Can the system successfully run a PETSc executable? This variable can be manually set to \"YES\" to force CMake to accept a given PETSc configuration, but this will almost always result in a broken build. If you change PETSC_DIR, PETSC_ARCH, or PETSC_CURRENT you would have to reset this variable." FORCE)
- endif (${${runs}})
- endmacro (PETSC_TEST_RUNS)
-
-
- find_path (PETSC_INCLUDE_DIR petscts.h HINTS "${PETSC_DIR}" PATH_SUFFIXES include NO_DEFAULT_PATH)
- find_path (PETSC_INCLUDE_CONF petscconf.h HINTS "${PETSC_DIR}" PATH_SUFFIXES "${PETSC_ARCH}/include" "bmake/${PETSC_ARCH}" NO_DEFAULT_PATH)
- mark_as_advanced (PETSC_INCLUDE_DIR PETSC_INCLUDE_CONF)
- set (petsc_includes_minimal ${PETSC_INCLUDE_CONF} ${PETSC_INCLUDE_DIR})
-
- petsc_test_runs ("${petsc_includes_minimal}" "${PETSC_LIBRARIES_TS}" petsc_works_minimal)
- if (petsc_works_minimal)
- message (STATUS "Minimal PETSc includes and libraries work. This probably means we are building with shared libs.")
- set (petsc_includes_needed "${petsc_includes_minimal}")
- else (petsc_works_minimal) # Minimal includes fail, see if just adding full includes fixes it
- petsc_test_runs ("${petsc_includes_all}" "${PETSC_LIBRARIES_TS}" petsc_works_allincludes)
- if (petsc_works_allincludes) # It does, we just need all the includes (
- message (STATUS "PETSc requires extra include paths, but links correctly with only interface libraries. This is an unexpected configuration (but it seems to work fine).")
- set (petsc_includes_needed ${petsc_includes_all})
- else (petsc_works_allincludes) # We are going to need to link the external libs explicitly
- resolve_libraries (petsc_libraries_external "${petsc_libs_external}")
- foreach (pkg SYS VEC MAT DM KSP SNES TS ALL)
- list (APPEND PETSC_LIBRARIES_${pkg} ${petsc_libraries_external})
- endforeach (pkg)
- petsc_test_runs ("${petsc_includes_minimal}" "${PETSC_LIBRARIES_TS}" petsc_works_alllibraries)
- if (petsc_works_alllibraries)
- message (STATUS "PETSc only need minimal includes, but requires explicit linking to all dependencies. This is expected when PETSc is built with static libraries.")
- set (petsc_includes_needed ${petsc_includes_minimal})
- else (petsc_works_alllibraries)
- # It looks like we really need everything, should have listened to Matt
- set (petsc_includes_needed ${petsc_includes_all})
- petsc_test_runs ("${petsc_includes_all}" "${PETSC_LIBRARIES_TS}" petsc_works_all)
- if (petsc_works_all) # We fail anyways
- message (STATUS "PETSc requires extra include paths and explicit linking to all dependencies. This probably means you have static libraries and something unexpected in PETSc headers.")
- else (petsc_works_all) # We fail anyways
- message (STATUS "PETSc could not be used, maybe the install is broken.")
- endif (petsc_works_all)
- endif (petsc_works_alllibraries)
- endif (petsc_works_allincludes)
- endif (petsc_works_minimal)
-
- # We do an out-of-source build so __FILE__ will be an absolute path, hence __INSDIR__ is superfluous
- if (${PETSC_VERSION} VERSION_LESS 3.1)
- set (PETSC_DEFINITIONS "-D__SDIR__=\"\"" CACHE STRING "PETSc definitions" FORCE)
- else ()
- set (PETSC_DEFINITIONS "-D__INSDIR__=" CACHE STRING "PETSc definitions" FORCE)
- endif ()
- # Sometimes this can be used to assist FindMPI.cmake
- set (PETSC_MPIEXEC ${petsc_mpiexec} CACHE FILEPATH "Executable for running PETSc MPI programs" FORCE)
- set (PETSC_INCLUDES ${petsc_includes_needed} CACHE STRING "PETSc include path" FORCE)
- set (PETSC_LIBRARIES ${PETSC_LIBRARIES_ALL} CACHE STRING "PETSc libraries" FORCE)
- set (PETSC_COMPILER ${petsc_cc} CACHE FILEPATH "PETSc compiler" FORCE)
- # Note that we have forced values for all these choices. If you
- # change these, you are telling the system to trust you that they
- # work. It is likely that you will end up with a broken build.
- mark_as_advanced (PETSC_INCLUDES PETSC_LIBRARIES PETSC_COMPILER PETSC_DEFINITIONS PETSC_MPIEXEC PETSC_EXECUTABLE_RUNS)
-endif ()
-
-include (FindPackageHandleStandardArgs)
-find_package_handle_standard_args (PETSc
- "PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH."
- PETSC_INCLUDES PETSC_LIBRARIES PETSC_EXECUTABLE_RUNS)
+++ /dev/null
-# Copyright (C) 2007-2012 CEA/DEN, EDF R&D, OPEN CASCADE
-#
-# Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN,
-# CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS
-#
-# This library is free software; you can redistribute it and/or
-# modify it under the terms of the GNU Lesser General Public
-# License as published by the Free Software Foundation; either
-# version 2.1 of the License.
-#
-# This library is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-# Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this library; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-#
-# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
-#
-
-# ------
-
-MESSAGE(STATUS "Check for python ...")
-
-# ------
-
-IF(PYTHON_IS_MANDATORY STREQUAL 0)
- SET(PYTHON_IS_MANDATORY 0)
- SET(PYTHON_IS_OPTIONAL 1)
-ENDIF(PYTHON_IS_MANDATORY STREQUAL 0)
-IF(PYTHON_IS_OPTIONAL STREQUAL 0)
- SET(PYTHON_IS_MANDATORY 1)
- SET(PYTHON_IS_OPTIONAL 0)
-ENDIF(PYTHON_IS_OPTIONAL STREQUAL 0)
-IF(NOT PYTHON_IS_MANDATORY AND NOT PYTHON_IS_OPTIONAL)
- SET(PYTHON_IS_MANDATORY 1)
- SET(PYTHON_IS_OPTIONAL 0)
-ENDIF(NOT PYTHON_IS_MANDATORY AND NOT PYTHON_IS_OPTIONAL)
-
-# ------
-
-SET(PYTHON_STATUS 1)
-IF(WITHOUT_PYTHON OR WITH_PYTHON STREQUAL 0)
- SET(PYTHON_STATUS 0)
- MESSAGE(STATUS "python disabled from command line.")
-ENDIF(WITHOUT_PYTHON OR WITH_PYTHON STREQUAL 0)
-
-# ------
-
-IF(PYTHON_STATUS)
- IF(WITH_PYTHON)
- SET(PYTHON_ROOT_USER ${WITH_PYTHON})
- ENDIF(WITH_PYTHON)
- IF(NOT PYTHON_ROOT_USER)
- SET(PYTHON_ROOT_USER $ENV{PYTHON_ROOT})
- ENDIF(NOT PYTHON_ROOT_USER)
- IF(NOT PYTHON_ROOT_USER)
- SET(PYTHON_ROOT_USER $ENV{PYTHONHOME})
- ENDIF(NOT PYTHON_ROOT_USER)
- IF(NOT PYTHON_ROOT_USER)
- SET(PYTHON_ROOT_USER /usr)
- ENDIF(NOT PYTHON_ROOT_USER)
-ENDIF(PYTHON_STATUS)
-
-# ------
-
-IF(PYTHON_STATUS)
- IF(PYTHON_ROOT_USER)
- SET(PYTHON_FIND_PATHS_OPTION NO_DEFAULT_PATH)
- ELSE(PYTHON_ROOT_USER)
- SET(PYTHON_FIND_PATHS_OPTION)
- ENDIF(PYTHON_ROOT_USER)
-ENDIF(PYTHON_STATUS)
-
-# ------
-
-IF(PYTHON_STATUS)
- IF(WINDOWS)
- IF(CMAKE_BUILD_TYPE STREQUAL Release)
- SET(PYTHON_EXECUTABLE_TO_FIND python)
- ELSE(CMAKE_BUILD_TYPE STREQUAL Release)
- SET(PYTHON_EXECUTABLE_TO_FIND python_d)
- ENDIF(CMAKE_BUILD_TYPE STREQUAL Release)
- ELSE(WINDOWS)
- SET(PYTHON_EXECUTABLE_TO_FIND python)
- ENDIF(WINDOWS)
- IF(NOT PYTHON_ROOT_USER)
- SET(PYTHON_EXECUTABLE_PATHS)
- ELSE(NOT PYTHON_ROOT_USER)
- IF(WINDOWS)
- SET(PYTHON_EXECUTABLE_PATHS ${PYTHON_ROOT_USER})
- ELSE(WINDOWS)
- SET(PYTHON_EXECUTABLE_PATHS ${PYTHON_ROOT_USER}/bin)
- ENDIF(WINDOWS)
- ENDIF(NOT PYTHON_ROOT_USER)
- FIND_PROGRAM(PYTHON_EXECUTABLE ${PYTHON_EXECUTABLE_TO_FIND} PATHS ${PYTHON_EXECUTABLE_PATHS} ${PYTHON_FIND_PATHS_OPTION})
- IF(PYTHON_EXECUTABLE)
- MESSAGE(STATUS "python found: ${PYTHON_EXECUTABLE}")
- IF(PYTHON_EXECUTABLE STREQUAL /usr/bin/python)
- ELSE(PYTHON_EXECUTABLE STREQUAL /usr/bin/python)
- SET(PYTHON_ROOT_USER ${PYTHON_EXECUTABLE})
- GET_FILENAME_COMPONENT(PYTHON_ROOT_USER ${PYTHON_ROOT_USER} PATH)
- IF(NOT WINDOWS)
- GET_FILENAME_COMPONENT(PYTHON_ROOT_USER ${PYTHON_ROOT_USER} PATH)
- ENDIF(NOT WINDOWS)
- ENDIF(PYTHON_EXECUTABLE STREQUAL /usr/bin/python)
- ELSE(PYTHON_EXECUTABLE)
- IF(PYTHON_ROOT_USER)
- MESSAGE(STATUS "${PYTHON_EXECUTABLE_TO_FIND} not found in ${PYTHON_EXECUTABLE_PATHS}, check your PYTHON installation.")
- ELSE(PYTHON_ROOT_USER)
- MESSAGE(STATUS "${PYTHON_EXECUTABLE_TO_FIND} not found on system, try to use WITH_PYTHON option or PYTHON_ROOT environment variable.")
- ENDIF(PYTHON_ROOT_USER)
- SET(PYTHON_STATUS 0)
- ENDIF(PYTHON_EXECUTABLE)
-ENDIF(PYTHON_STATUS)
-
-# ------
-
-IF(PYTHON_STATUS)
- EXECUTE_PROCESS(
- COMMAND ${PYTHON_EXECUTABLE} -c "import sys; sys.stdout.write(sys.version[:3])"
- OUTPUT_VARIABLE PYTHON_VERSION
- )
-ENDIF(PYTHON_STATUS)
-
-# ------
-
-IF(PYTHON_STATUS)
- IF(PYTHON_ROOT_USER)
- SET(PYTHON_FIND_PATHS_OPTION NO_DEFAULT_PATH)
- ELSE(PYTHON_ROOT_USER)
- SET(PYTHON_FIND_PATHS_OPTION)
- ENDIF(PYTHON_ROOT_USER)
-ENDIF(PYTHON_STATUS)
-
-# ------
-
-IF(PYTHON_STATUS)
- IF(PYTHON_ROOT_USER)
- SET(PYTHON_INCLUDE_PATHS ${PYTHON_ROOT_USER}/include ${PYTHON_ROOT_USER}/include/python${PYTHON_VERSION})
- ELSE(PYTHON_ROOT_USER)
- SET(PYTHON_INCLUDE_PATHS /usr/include/python${PYTHON_VERSION})
- ENDIF(PYTHON_ROOT_USER)
- SET(PYTHON_INCLUDE_TO_FIND Python.h)
- FIND_PATH(PYTHON_INCLUDE_DIR ${PYTHON_INCLUDE_TO_FIND} PATHS ${PYTHON_INCLUDE_PATHS} ${PYTHON_FIND_PATHS_OPTION})
- SET(PYTHON_DEFINITIONS)
- IF(PYTHON_INCLUDE_DIR)
- SET(PYTHON_INCLUDES -I${PYTHON_INCLUDE_DIR})# to remove
- SET(PYTHON_INCLUDE_DIRS ${PYTHON_INCLUDE_DIR})
- IF(WINDOWS)
- IF(CMAKE_BUILD_TYPE STREQUAL Release)
- ELSE(CMAKE_BUILD_TYPE STREQUAL Release)
- SET(PYTHON_INCLUDES ${PYTHON_INCLUDES} -DHAVE_DEBUG_PYTHON)# to remove
- SET(PYTHON_DEFINITIONS "-DHAVE_DEBUG_PYTHON")
- ENDIF(CMAKE_BUILD_TYPE STREQUAL Release)
- ENDIF(WINDOWS)
- MESSAGE(STATUS "${PYTHON_INCLUDE_TO_FIND} found in ${PYTHON_INCLUDE_DIR}")
- ELSE(PYTHON_INCLUDE_DIR)
- SET(PYTHON_STATUS 0)
- IF(PYTHON_ROOT_USER)
- MESSAGE(STATUS "${PYTHON_INCLUDE_TO_FIND} not found in ${PYTHON_INCLUDE_PATHS}, check your PYTHON installation.")
- ELSE(PYTHON_ROOT_USER)
- MESSAGE(STATUS "${PYTHON_INCLUDE_TO_FIND} not found on system, try to use WITH_PYTHON option or PYTHON_ROOT environment variable.")
- ENDIF(PYTHON_ROOT_USER)
- ENDIF(PYTHON_INCLUDE_DIR)
-ENDIF(PYTHON_STATUS)
-
-# ----
-
-IF(PYTHON_STATUS)
- IF(PYTHON_ROOT_USER)
- IF(WINDOWS)
- SET(PYTHON_LIB_PATHS ${PYTHON_ROOT_USER}/libs)
- ELSE(WINDOWS)
- SET(PYTHON_LIB_PATHS ${PYTHON_ROOT_USER}/lib ${PYTHON_ROOT_USER}/lib/python${PYTHON_VERSION}/config)
- ENDIF(WINDOWS)
- ELSE(PYTHON_ROOT_USER)
- SET(PYTHON_LIB_PATHS)
- ENDIF(PYTHON_ROOT_USER)
- IF(WINDOWS)
- STRING(REPLACE "." "" PYTHON_VERSION_WITHOUT_DOT ${PYTHON_VERSION})
- IF(CMAKE_BUILD_TYPE STREQUAL Release)
- FIND_LIBRARY(PYTHON_LIB python${PYTHON_VERSION_WITHOUT_DOT} PATHS ${PYTHON_LIB_PATHS} ${PYTHON_FIND_PATHS_OPTION})
- ELSE(CMAKE_BUILD_TYPE STREQUAL Release)
- FIND_LIBRARY(PYTHON_LIB python${PYTHON_VERSION_WITHOUT_DOT}_d PATHS ${PYTHON_LIB_PATHS} ${PYTHON_FIND_PATHS_OPTION})
- ENDIF(CMAKE_BUILD_TYPE STREQUAL Release)
- ELSE(WINDOWS)
- FIND_LIBRARY(PYTHON_LIB python${PYTHON_VERSION} PATHS ${PYTHON_LIB_PATHS} ${PYTHON_FIND_PATHS_OPTION})
- ENDIF(WINDOWS)
- SET(PYTHON_LIBS)
- IF(PYTHON_LIB)
- SET(PYTHON_LIBS ${PYTHON_LIBS} ${PYTHON_LIB})
- MESSAGE(STATUS "python lib found: ${PYTHON_LIB}")
- ELSE(PYTHON_LIB)
- SET(PYTHON_STATUS 0)
- IF(PYTHON_ROOT_USER)
- MESSAGE(STATUS "python lib not found in ${PYTHON_LIB_PATHS}, check your PYTHON installation.")
- ELSE(PYTHON_ROOT_USER)
- MESSAGE(STATUS "python lib not found on system, try to use WITH_PYTHON option or PYTHON_ROOT environment variable.")
- ENDIF(PYTHON_ROOT_USER)
- ENDIF(PYTHON_LIB)
-ENDIF(PYTHON_STATUS)
-
-# ----
-
-SET(NUMPY_STATUS 0)
-IF(PYTHON_STATUS)
- EXECUTE_PROCESS(
- COMMAND ${PYTHON_EXECUTABLE} -c "import numpy ; import sys ; sys.stdout.write(numpy.get_include())"
- OUTPUT_VARIABLE NUMPY_INCLUDE_DIR
- ERROR_QUIET
- )
- IF(NUMPY_INCLUDE_DIR)
- SET(NUMPY_STATUS 1)
- ENDIF(NUMPY_INCLUDE_DIR)
- IF(NUMPY_STATUS)
- SET(PYTHON_INCLUDES ${PYTHON_INCLUDES} -DWITH_NUMPY -I${NUMPY_INCLUDE_DIR})# to remove
- SET(PYTHON_INCLUDE_DIRS ${PYTHON_INCLUDE_DIRS} ${NUMPY_INCLUDE_DIR})
- SET(PYTHON_DEFINITIONS "${PYTHON_DEFINITIONS} -DWITH_NUMPY")
- MESSAGE(STATUS "numpy found : ${NUMPY_INCLUDE_DIR}")
- ELSE(NUMPY_STATUS)
- MESSAGE(STATUS "numpy not found")
- ENDIF(NUMPY_STATUS)
-ENDIF(PYTHON_STATUS)
-
-# ----
-
-IF(PYTHON_STATUS)
- SET(PYTHON_CPPFLAGS ${PYTHON_INCLUDES})# to remove
- SET(PYLOGLEVEL WARNING)
-ELSE(PYTHON_STATUS)
- IF(PYTHON_IS_MANDATORY)
- MESSAGE(FATAL_ERROR "python not found ... mandatory ... abort")
- ELSE(PYTHON_IS_MANDATORY)
- MESSAGE(STATUS "python not found ... optional ... disabled")
- ENDIF(PYTHON_IS_MANDATORY)
-ENDIF(PYTHON_STATUS)
+++ /dev/null
-# PackageMultipass - this module defines two macros
-#
-# FIND_PACKAGE_MULTIPASS (Name CURRENT
-# STATES VAR0 VAR1 ...
-# DEPENDENTS DEP0 DEP1 ...)
-#
-# This function creates a cache entry <UPPERCASED-Name>_CURRENT which
-# the user can set to "NO" to trigger a reconfiguration of the package.
-# The first time this function is called, the values of
-# <UPPERCASED-Name>_VAR0, ... are saved. If <UPPERCASED-Name>_CURRENT
-# is false or if any STATE has changed since the last time
-# FIND_PACKAGE_MULTIPASS() was called, then CURRENT will be set to "NO",
-# otherwise CURRENT will be "YES". IF not CURRENT, then
-# <UPPERCASED-Name>_DEP0, ... will be FORCED to NOTFOUND.
-# Example:
-# find_path (FOO_DIR include/foo.h)
-# FIND_PACKAGE_MULTIPASS (Foo foo_current
-# STATES DIR
-# DEPENDENTS INCLUDES LIBRARIES)
-# if (NOT foo_current)
-# # Make temporary files, run programs, etc, to determine FOO_INCLUDES and FOO_LIBRARIES
-# endif (NOT foo_current)
-#
-# MULTIPASS_SOURCE_RUNS (Name INCLUDES LIBRARIES SOURCE RUNS LANGUAGE)
-# Always runs the given test, use this when you need to re-run tests
-# because parent variables have made old cache entries stale. The LANGUAGE
-# variable is either C or CXX indicating which compiler the test should
-# use.
-# MULTIPASS_C_SOURCE_RUNS (Name INCLUDES LIBRARIES SOURCE RUNS)
-# DEPRECATED! This is only included for backwards compatability. Use
-# the more general MULTIPASS_SOURCE_RUNS instead.
-# Always runs the given test, use this when you need to re-run tests
-# because parent variables have made old cache entries stale.
-
-macro (FIND_PACKAGE_MULTIPASS _name _current)
- string (TOUPPER ${_name} _NAME)
- set (_args ${ARGV})
- list (REMOVE_AT _args 0 1)
-
- set (_states_current "YES")
- list (GET _args 0 _cmd)
- if (_cmd STREQUAL "STATES")
- list (REMOVE_AT _args 0)
- list (GET _args 0 _state)
- while (_state AND NOT _state STREQUAL "DEPENDENTS")
- # The name of the stored value for the given state
- set (_stored_var PACKAGE_MULTIPASS_${_NAME}_${_state})
- if (NOT "${${_stored_var}}" STREQUAL "${${_NAME}_${_state}}")
- set (_states_current "NO")
- endif (NOT "${${_stored_var}}" STREQUAL "${${_NAME}_${_state}}")
- set (${_stored_var} "${${_NAME}_${_state}}" CACHE INTERNAL "Stored state for ${_name}." FORCE)
- list (REMOVE_AT _args 0)
- list (GET _args 0 _state)
- endwhile (_state AND NOT _state STREQUAL "DEPENDENTS")
- endif (_cmd STREQUAL "STATES")
-
- set (_stored ${_NAME}_CURRENT)
- if (NOT ${_stored})
- set (${_stored} "YES" CACHE BOOL "Is the configuration for ${_name} current? Set to \"NO\" to reconfigure." FORCE)
- set (_states_current "NO")
- endif (NOT ${_stored})
-
- set (${_current} ${_states_current})
- if (NOT ${_current} AND PACKAGE_MULTIPASS_${_name}_CALLED)
- message (STATUS "Clearing ${_name} dependent variables")
- # Clear all the dependent variables so that the module can reset them
- list (GET _args 0 _cmd)
- if (_cmd STREQUAL "DEPENDENTS")
- list (REMOVE_AT _args 0)
- foreach (dep ${_args})
- set (${_NAME}_${dep} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
- endforeach (dep)
- endif (_cmd STREQUAL "DEPENDENTS")
- set (${_NAME}_FOUND "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
- endif ()
- set (PACKAGE_MULTIPASS_${name}_CALLED YES CACHE INTERNAL "Private" FORCE)
-endmacro (FIND_PACKAGE_MULTIPASS)
-
-
-macro (MULTIPASS_SOURCE_RUNS includes libraries source runs language)
- include (Check${language}SourceRuns)
- # This is a ridiculous hack. CHECK_${language}_SOURCE_* thinks that if the
- # *name* of the return variable doesn't change, then the test does
- # not need to be re-run. We keep an internal count which we
- # increment to guarantee that every test name is unique. If we've
- # gotten here, then the configuration has changed enough that the
- # test *needs* to be rerun.
- if (NOT MULTIPASS_TEST_COUNT)
- set (MULTIPASS_TEST_COUNT 00)
- endif (NOT MULTIPASS_TEST_COUNT)
- math (EXPR _tmp "${MULTIPASS_TEST_COUNT} + 1") # Why can't I add to a cache variable?
- set (MULTIPASS_TEST_COUNT ${_tmp} CACHE INTERNAL "Unique test ID")
- set (testname MULTIPASS_TEST_${MULTIPASS_TEST_COUNT}_${runs})
- set (CMAKE_REQUIRED_INCLUDES ${includes})
- set (CMAKE_REQUIRED_LIBRARIES ${libraries})
- if(${language} STREQUAL "C")
- check_c_source_runs ("${source}" ${testname})
- elseif(${language} STREQUAL "CXX")
- check_cxx_source_runs ("${source}" ${testname})
- endif()
- set (${runs} "${${testname}}")
-endmacro (MULTIPASS_SOURCE_RUNS)
-
-macro (MULTIPASS_C_SOURCE_RUNS includes libraries source runs)
- multipass_source_runs("${includes}" "${libraries}" "${source}" ${runs} "C")
-endmacro (MULTIPASS_C_SOURCE_RUNS)
+++ /dev/null
-##Copyright (C) jedbrown, johnfettig.
-##All rights reserved.
-##
-##Redistribution and use in source and binary forms, with or without modification,
-##are permitted provided that the following conditions are met:
-##
-##* Redistributions of source code must retain the above copyright notice, this
-## list of conditions and the following disclaimer.
-##
-##* Redistributions in binary form must reproduce the above copyright notice, this
-## list of conditions and the following disclaimer in the documentation and/or
-## other materials provided with the distribution.
-##
-##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-##ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-##WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
-##ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-##(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-##LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-##ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-##(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-##SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-# ResolveCompilerPaths - this module defines two macros
-#
-# RESOLVE_LIBRARIES (XXX_LIBRARIES LINK_LINE)
-# This macro is intended to be used by FindXXX.cmake modules.
-# It parses a compiler link line and resolves all libraries
-# (-lfoo) using the library path contexts (-L/path) in scope.
-# The result in XXX_LIBRARIES is the list of fully resolved libs.
-# Example:
-#
-# RESOLVE_LIBRARIES (FOO_LIBRARIES "-L/A -la -L/B -lb -lc -ld")
-#
-# will be resolved to
-#
-# FOO_LIBRARIES:STRING="/A/liba.so;/B/libb.so;/A/libc.so;/usr/lib/libd.so"
-#
-# if the filesystem looks like
-#
-# /A: liba.so libc.so
-# /B: liba.so libb.so
-# /usr/lib: liba.so libb.so libc.so libd.so
-#
-# and /usr/lib is a system directory.
-#
-# Note: If RESOLVE_LIBRARIES() resolves a link line differently from
-# the native linker, there is a bug in this macro (please report it).
-#
-# RESOLVE_INCLUDES (XXX_INCLUDES INCLUDE_LINE)
-# This macro is intended to be used by FindXXX.cmake modules.
-# It parses a compile line and resolves all includes
-# (-I/path/to/include) to a list of directories. Other flags are ignored.
-# Example:
-#
-# RESOLVE_INCLUDES (FOO_INCLUDES "-I/A -DBAR='\"irrelevant -I/string here\"' -I/B")
-#
-# will be resolved to
-#
-# FOO_INCLUDES:STRING="/A;/B"
-#
-# assuming both directories exist.
-# Note: as currently implemented, the -I/string will be picked up mistakenly (cry, cry)
-include (CorrectWindowsPaths)
-
-macro (RESOLVE_LIBRARIES LIBS LINK_LINE)
- string (REGEX MATCHALL "((-L|-l|-Wl)([^\" ]+|\"[^\"]+\")|[^\" ]+\\.(a|so|dll|lib))" _all_tokens "${LINK_LINE}")
- set (_libs_found)
- set (_directory_list)
- foreach (token ${_all_tokens})
- if (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
- # If it's a library path, add it to the list
- string (REGEX REPLACE "^-L" "" token ${token})
- string (REGEX REPLACE "//" "/" token ${token})
- convert_cygwin_path(token)
- list (APPEND _directory_list ${token})
- elseif (token MATCHES "^(-l([^\" ]+|\"[^\"]+\")|[^\" ]+\\.(a|so|dll|lib))")
- # It's a library, resolve the path by looking in the list and then (by default) in system directories
- if (WIN32) #windows expects "libfoo", linux expects "foo"
- string (REGEX REPLACE "^-l" "lib" token ${token})
- else (WIN32)
- string (REGEX REPLACE "^-l" "" token ${token})
- endif (WIN32)
- set (_root)
- if (token MATCHES "^/") # We have an absolute path
- #separate into a path and a library name:
- string (REGEX MATCH "[^/]*\\.(a|so|dll|lib)$" libname ${token})
- string (REGEX MATCH ".*[^${libname}$]" libpath ${token})
- convert_cygwin_path(libpath)
- set (_directory_list ${_directory_list} ${libpath})
- set (token ${libname})
- endif (token MATCHES "^/")
- set (_lib "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
- find_library (_lib ${token} HINTS ${_directory_list} ${_root})
- if (_lib)
- string (REPLACE "//" "/" _lib ${_lib})
- list (APPEND _libs_found ${_lib})
- else (_lib)
- message (STATUS "Unable to find library ${token}")
- endif (_lib)
- endif (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
- endforeach (token)
- set (_lib "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
- # only the LAST occurence of each library is required since there should be no circular dependencies
- if (_libs_found)
- list (REVERSE _libs_found)
- list (REMOVE_DUPLICATES _libs_found)
- list (REVERSE _libs_found)
- endif (_libs_found)
- set (${LIBS} "${_libs_found}")
-endmacro (RESOLVE_LIBRARIES)
-
-macro (RESOLVE_INCLUDES INCS COMPILE_LINE)
- string (REGEX MATCHALL "-I([^\" ]+|\"[^\"]+\")" _all_tokens "${COMPILE_LINE}")
- set (_incs_found)
- foreach (token ${_all_tokens})
- string (REGEX REPLACE "^-I" "" token ${token})
- string (REGEX REPLACE "//" "/" token ${token})
- convert_cygwin_path(token)
- if (EXISTS ${token})
- list (APPEND _incs_found ${token})
- else (EXISTS ${token})
- message (STATUS "Include directory ${token} does not exist")
- endif (EXISTS ${token})
- endforeach (token)
- list (REMOVE_DUPLICATES _incs_found)
- set (${INCS} "${_incs_found}")
-endmacro (RESOLVE_INCLUDES)
endif (COREFLOWS_WITH_PYTHON )
-add_custom_target (tests COMMAND ctest -O testsCoreFlows.log)
+add_custom_target (tests_CoreFlows COMMAND ctest -O testsCoreFlows.log)
add_custom_target (SinglePhase COMMAND ctest -R SinglePhase)# may be replace ctest -R with ctest -L
add_custom_target (DriftModel COMMAND ctest -R DriftModel) # may be replace ctest -R with ctest -L
add_custom_target ( FiveEqsTwoFluid COMMAND ctest -R FiveEqsTwoFluid)# may be replace ctest -R with ctest -L
add_custom_target (DiffusionEquation COMMAND ctest -R DiffusionEquation -E StationaryDiffusionEquation)# may be replace ctest -R with ctest -L
-add_custom_target (diffusion COMMAND ctest -R DiffusionEquation)# may be replace ctest -R with ctest -L
+add_custom_target (diffusion_tests COMMAND ctest -R DiffusionEquation)# may be replace ctest -R with ctest -L
add_custom_target (TransportEquation COMMAND ctest -R TransportEquation)# may be replace ctest -R with ctest -L
-add_custom_target (transport COMMAND ctest -R TransportEquation)# may be replace ctest -R with ctest -L
+add_custom_target (transport_tests COMMAND ctest -R TransportEquation)# may be replace ctest -R with ctest -L
add_custom_target (StationaryDiffusionEquation COMMAND ctest -R StationaryDiffusionEquation)# may be replace ctest -R with ctest -L
add_custom_target (convergence COMMAND ctest -R convergence)# may be replace ctest -R with ctest -L
-add_custom_target (fv COMMAND ctest -R FV)# may be replace ctest -R with ctest -L
-add_custom_target (FV COMMAND ctest -R FV)# may be replace ctest -R with ctest -L
-add_custom_target (fe COMMAND ctest -R FE)# may be replace ctest -R with ctest -L
-add_custom_target (FE COMMAND ctest -R FE)# may be replace ctest -R with ctest -L
-add_custom_target (1D COMMAND ctest -R 1D)# may be replace ctest -R with ctest -L
-add_custom_target (2D COMMAND ctest -R 2D)# may be replace ctest -R with ctest -L
-add_custom_target (3D COMMAND ctest -R 3D)# may be replace ctest -R with ctest -L
+add_custom_target (fv_tests COMMAND ctest -R FV)# may be replace ctest -R with ctest -L
+add_custom_target (FV_tests COMMAND ctest -R FV)# may be replace ctest -R with ctest -L
+add_custom_target (fe_tests COMMAND ctest -R FE)# may be replace ctest -R with ctest -L
+add_custom_target (FE_tests COMMAND ctest -R FE)# may be replace ctest -R with ctest -L
+add_custom_target (1D_tests COMMAND ctest -R 1D)# may be replace ctest -R with ctest -L
+add_custom_target (2D_tests COMMAND ctest -R 2D)# may be replace ctest -R with ctest -L
+add_custom_target (3D_tests COMMAND ctest -R 3D)# may be replace ctest -R with ctest -L
add_custom_target (Dirichlet COMMAND ctest -R Dirichlet)# may be replace ctest -R with ctest -L
add_custom_target (Neumann COMMAND ctest -R Neumann)# may be replace ctest -R with ctest -L
file(COPY ${NOTEBOOK} ${TABLES} DESTINATION ${CMAKE_CURRENT_BINARY_DIR})
-add_custom_target ( notebook COMMAND jupyter-nbconvert --to notebook --execute convergence_synthesis_StationaryDiffusion.ipynb )
+add_custom_target ( notebook_CoreFlows COMMAND jupyter-nbconvert --to notebook --execute convergence_synthesis_StationaryDiffusion.ipynb )
SET_SOURCE_FILES_PROPERTIES(CoreFlows.i PROPERTIES SWIG_DEFINITIONS "-shadow")
INCLUDE_DIRECTORIES(
- ${PYTHON_INCLUDE_DIRS}
+ ${Python_INCLUDE_DIRS}
${CoreFlows_INCLUDES} #
)
--- /dev/null
+SOLVERLAB
+======
+
+SOLVERLAB is a geometrical and numerical C++/Python library designed for numerical analysts who work on the discretisation of partial differential equations on general shapes and meshes and would rather focus on high-level scripting. The goal is to provide simple MATLAB style functions for the generation and manipulation of meshes, fields and matrices. The library originates from [CDMATH](http://cdmath.jimdo.com), a collaborative workgroup with the same name. It is based on the [MEDcoupling](https://docs.salome-platform.org/latest/dev/MEDCoupling/tutorial/index.html) C++/python library of the [SALOME](http://www.salome-platform.org/) project for the handling of meshes and fields, and on the C++ library [PETSC](https://www.mcs.anl.gov/petsc/) for the handling of matrices and linear solvers.
+
+SOLVERLAB includes PDE systems
+arising from the modeling of nuclear reactor cores which involves fluid dynamics, heat and neutron diffusion as well as solid elasticity. It
+is a simple environment meant at students and researchers for teachind and promote new numerical
+methods on general geometries with unstructured meshes.
+The main research objectives of SOLVERLAB are the study of
+
+- Numerical schemes for compressible flows at low Mach numbers on general meshes
+- Well balanced schemes for stiff source terms (heat source, phase change, pressure losses)
+- Numerical handling of flow inversion, phase disappearance and counter-currents in two phase flows
+- Numerical handling of stiff porosity or cross section functions
+- Schemes that preserve the phasic volume fraction α ∈ [0, 1]
+- Convergence of finite volume methods
+- New preconditioners for implicit methods for two phase flows
+- The coupling of fluid models or multiphysics coupling (eg thermal hydraulics and neutronics or thermal hydraulics and solid thermics)
+
+The library is currently developed for linux distributions and is maintained on Ubuntu 16.04 LTS and 18.04 LTS, as well as on Fedora 24, 26, 28, 29 and 30.
+
+Examples of use
+---------------
+- [Examples of stable numerical methods for the 1D linear transport equation](CDMATH/tests/doc/1DTransportEquation/RegularGrid/TransportEquation1D_RegularGrid.ipynb)
+- [Shock formation and numerical capture issues for the 1D Burgers' equations](tests/doc/1DBurgersEquation/BurgersEquation1D.ipynb)
+- [Influence of the mesh on the convergence and low Mach precision for the UPWIND finite volume method applied to the 2D wave system](CDMATH/tests/doc/2DWaveSystemVF_stationary/Convergence_WaveSystem_Upwind_SQUARE.ipynb)
+- [Influence of the mesh on the convergence and low Mach precision for the CENTERED finite volume method applied to the 2D wave system](CDMATH/tests/doc/2DWaveSystemVF_stationary/Convergence_WaveSystem_Centered_SQUARE.ipynb)
+- [Influence of the mesh on the convergence and low Mach precision for the STAGGERED finite volume method applied to the 2D wave system](CDMATH/tests/doc/2DWaveSystemVF_stationary/Convergence_WaveSystem_Staggered_SQUARE_squares.ipynb)
+- [Influence of the mesh on the convergence and low Mach precision for the PSEUDO-STAGGERED (colocated) finite volume method applied to the 2D wave system](CDMATH/tests/doc/2DWaveSystemVF_stationary/Convergence_WaveSystem_PStag_SQUARE.ipynb)
+- [Finite elements for the Poisson problem on a cube in 3D (by S. Kameni Ngwamou, PhD student)](CDMATH/tests/doc/3DPoissonEF/FiniteElements3DPoisson_CUBE.ipynb)
+- [Finite elements for the stationary diffusion of the temperature in a 3D room. Influence of the radiator position (by S. Kameni Ngwamou, PhD student)](CDMATH/tests/doc/3DRoomCoolingEF/3DRoomCoolingEF.ipynb)
+- [Surface Finite elements for the Poisson-Beltrami problem on a sphere in 3D (by M. Nguemfouo, PhD student)](CDMATH/tests/doc/3DPoissonSphereEF/SynthesisConvergenceFESphere.pdf)
+- [Surface Finite elements for the Poisson-Beltrami problem on a torus in 3D (by M. Nguemfouo, PhD student)](CDMATH/tests/doc/3DPoissonTorusEF/SynthesisConvergenceFETorus.pdf)
+
+Download SOLVERLAB sources to compile
+----------------------------------
+
+Create your source directory. For instance:
+* `mkdir ~/workspace/SOLVERLAB`
+* `cd ~/workspace/SOLVERLAB`
+
+Download from GitHub
+* click on the following link : `https://github.com/ndjinga/SOLVERLAB/archive/master.zip`, then unzip the file in a directory SOLVERLAB-master
+* or type the following in a terminal : `wget https://github.com/ndjinga/SOLVERLAB/archive/master.zip`, then unzip the file in a directory SOLVERLAB-master
+* or clone the git repository to a folder SOLVERLAB-master: `git clone https://github.com/ndjinga/SOLVERLAB.git SOLVERLAB-master`
+
+
+Set the environment for the compilation of SOLVERLAB
+---------------------------------------------
+Dependencies. The following package list is sufficient on Ubuntu 14.04, Ubuntu 16.04, Ubuntu 18.04 :
+
+ - `cmake3` (mandatory)
+ - `g++` or another C++ compiler (mandatory)
+ - `python-dev`, `python-numpy` and `swig3`for python scripts (mandatory)
+ - `python-matplotlib` and `paraview` for postprocessing tools such as plotting curves (matplotlib) or generating 3D view images (paraview) (mandatory)
+ - `doxygen`, `graphviz` and `mscgen`, if you want to generate a nice source code documentation in `~/workspace/SOLVERLAB/SOLVERLAB_install/doc/`. Use the compilation option `-DSOLVERLAB_WITH_DOCUMENTATION=ON` (optional).
+ - `libcppunit-dev`, if you want to generate unit tests. Use the compilation option `-DSOLVERLAB_WITH_TESTS=ON` (optional).
+ - `rpm`, if you want to generate RPM installation packages. Use the compilation option `-DSOLVERLAB_WITH_PACKAGE=ON` (optional).
+
+Directories. Create the suggested build and installation folders:
+* `cd ~/workspace/SOLVERLAB`
+* `mkdir SOLVERLAB_build`
+* `mkdir SOLVERLAB_install`
+* `cd SOLVERLAB_build`
+
+
+Compile and install SOLVERLAB
+--------------------------
+Simpler build for a minimum version:
+* `cmake ../SOLVERLAB-master/ -DCMAKE_INSTALL_PREFIX=../SOLVERLAB_install -DCMAKE_BUILD_TYPE=Release `
+> This will download and build the following dependencies
+> - PETSc from http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.13.tar.gz
+> - SLEPc from https://slepc.upv.es/download/distrib/slepc-3.13.4.tar.gz
+> - HDF5 http://files.salome-platform.org/Salome/other/med-4.1.0.tar.gz
+> - MEDFILE from http://files.salome-platform.org/Salome/other/med-4.1.0.tar.gz
+> - MEDCOUPLING from http://files.salome-platform.org/Salome/other/medCoupling-9.4.0.tar.gz
+
+If you already have an installation of PETSC, MED and MEDCoupling, you may save computational time and memory by using the advanced build version:
+* `cmake ../SOLVERLAB-master -DCMAKE_INSTALL_PREFIX=../SOLVERLAB_install -DCMAKE_BUILD_TYPE=Release -G"Eclipse CDT4 - Unix Makefiles" -D_ECLIPSE_VERSION=4.3 -DSOLVERLAB_WITH_DOCUMENTATION=ON -DPETSC_DIR=${PETSC_DIR} -DPETSC_ARCH=${PETSC_ARCH} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ROOT_DIR=${MEDCOUPLING_ROOT_DIR}`
+> This assumes that you have an existing
+> - install of PETSc (with submodules SLEPC and HDF5) at the location given by the environment variable PETSC_DIR and the architecture variable PETSC_ARCH
+> See the instructions given in [the official documentation](http://www.mcs.anl.gov/petsc/documentation/installation.html)
+> - install of MED at the location given by the environment variable MEDFILE_ROOT_DIR
+> - install of MEDCOUPLING at the location given by the environment variable MEDCOUPLING_ROOT_DIR
+
+The 3 dependencies PETSC, MED and MEDCOUPLING should have been compiled with the same version of HDF5
+Warning : the linux package libhdf5-dev is generally not compatible with the libraries MED and MEDCoupling
+Compile and install:
+* `make`
+* `make doc install`
+
+Run unit and example tests:
+* make example
+
+Run validation tests:
+* make validation
+
+Use of SOLVERLAB
+-------------
+
+To use SOLVERLAB with your Python code, you can load the SOLVERLAB environment in your terminal using the command
+ * source `~/workspace/SOLVERLAB/SOLVERLAB_install/env_SOLVERLAB.sh`
+Then in your terminal simply type
+- `python main.py `
+
+If performance or parallelism is an issue for your simulations, you can use SOLVERLAB librairies with your C++ code :
+ * C++ libraries: `export LD_LIBRARY_PATH=~/workspace/SOLVERLAB/SOLVERLAB_install/lib`
+ * To know how to include the right libraries for compilation, see the makefiles of the examples. They include the list ` -lmedC -lmedloader -lmedcoupling -lbase -lmesh -llinearsolver`.
+
+The SOLVERLAB environment variables consist in :
+ * SOLVERLAB C++ library path: `~/workspace/SOLVERLAB/SOLVERLAB_install/lib`
+ * SOLVERLAB Python library paths: `~/workspace/SOLVERLAB/SOLVERLAB_install/lib/SOLVERLAB:~/workspace/SOLVERLAB/SOLVERLAB_install/bin/SOLVERLAB`
+ * PETSc, SLEPc and HDF5 library path: `${PETSC_DIR}/${PETSC_ARCH}/lib`
+ * MED library path: `${MEDFILE_ROOT_DIR}/lib`
+ * MEDCOUPLING library path: `${MEDCOUPLING_ROOT_DIR}/lib`
+
--- /dev/null
+# Copyright (c) 2012 - 2015, Lars Bilke
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without modification,
+# are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice, this
+# list of conditions and the following disclaimer.
+#
+# 2. Redistributions in binary form must reproduce the above copyright notice,
+# this list of conditions and the following disclaimer in the documentation
+# and/or other materials provided with the distribution.
+#
+# 3. Neither the name of the copyright holder nor the names of its contributors
+# may be used to endorse or promote products derived from this software without
+# specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
+# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+# ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+#
+#
+# 2012-01-31, Lars Bilke
+# - Enable Code Coverage
+#
+# 2013-09-17, Joakim Söderberg
+# - Added support for Clang.
+# - Some additional usage instructions.
+#
+# USAGE:
+
+# 0. (Mac only) If you use Xcode 5.1 make sure to patch geninfo as described here:
+# http://stackoverflow.com/a/22404544/80480
+#
+# 1. Copy this file into your cmake modules path.
+#
+# 2. Add the following line to your CMakeLists.txt:
+# INCLUDE(CodeCoverage)
+#
+# 3. Set compiler flags to turn off optimization and enable coverage:
+# SET(CMAKE_CXX_FLAGS "-g -O0 -fprofile-arcs -ftest-coverage")
+# SET(CMAKE_C_FLAGS "-g -O0 -fprofile-arcs -ftest-coverage")
+#
+# 3. Use the function SETUP_TARGET_FOR_COVERAGE to create a custom make target
+# which runs your test executable and produces a lcov code coverage report:
+# Example:
+# SETUP_TARGET_FOR_COVERAGE(
+# my_coverage_target # Name for custom target.
+# test_driver # Name of the test driver executable that runs the tests.
+# # NOTE! This should always have a ZERO as exit code
+# # otherwise the coverage generation will not complete.
+# coverage # Name of output directory.
+# )
+#
+# 4. Build a Debug build:
+# cmake -DCMAKE_BUILD_TYPE=Debug ..
+# make
+# make my_coverage_target
+#
+#
+
+# Check prereqs
+FIND_PROGRAM( GCOV_PATH gcov )
+FIND_PROGRAM( LCOV_PATH lcov )
+FIND_PROGRAM( GENHTML_PATH genhtml )
+FIND_PROGRAM( GCOVR_PATH gcovr PATHS ${CMAKE_SOURCE_DIR}/tests)
+
+IF(NOT GCOV_PATH)
+ MESSAGE(FATAL_ERROR "gcov not found! Aborting...")
+ENDIF() # NOT GCOV_PATH
+
+IF(NOT CMAKE_COMPILER_IS_GNUCXX)
+ # Clang version 3.0.0 and greater now supports gcov as well.
+ MESSAGE(WARNING "Compiler is not GNU gcc! Clang Version 3.0.0 and greater supports gcov as well, but older versions don't.")
+
+ IF(NOT "${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
+ MESSAGE(FATAL_ERROR "Compiler is not GNU gcc! Aborting...")
+ ENDIF()
+ENDIF() # NOT CMAKE_COMPILER_IS_GNUCXX
+
+SET(CMAKE_CXX_FLAGS_COVERAGE
+ "-g -O0 --coverage -fprofile-arcs -ftest-coverage"
+ CACHE STRING "Flags used by the C++ compiler during coverage builds."
+ FORCE )
+SET(CMAKE_C_FLAGS_COVERAGE
+ "-g -O0 --coverage -fprofile-arcs -ftest-coverage"
+ CACHE STRING "Flags used by the C compiler during coverage builds."
+ FORCE )
+SET(CMAKE_EXE_LINKER_FLAGS_COVERAGE
+ ""
+ CACHE STRING "Flags used for linking binaries during coverage builds."
+ FORCE )
+SET(CMAKE_SHARED_LINKER_FLAGS_COVERAGE
+ ""
+ CACHE STRING "Flags used by the shared libraries linker during coverage builds."
+ FORCE )
+MARK_AS_ADVANCED(
+ CMAKE_CXX_FLAGS_COVERAGE
+ CMAKE_C_FLAGS_COVERAGE
+ CMAKE_EXE_LINKER_FLAGS_COVERAGE
+ CMAKE_SHARED_LINKER_FLAGS_COVERAGE )
+
+IF ( NOT (CMAKE_BUILD_TYPE STREQUAL "Debug" OR CMAKE_BUILD_TYPE STREQUAL "Coverage"))
+ MESSAGE( WARNING "Code coverage results with an optimized (non-Debug) build may be misleading" )
+ENDIF() # NOT CMAKE_BUILD_TYPE STREQUAL "Debug"
+
+
+# Param _targetname The name of new the custom make target
+# Param _testrunner The name of the target which runs the tests.
+# MUST return ZERO always, even on errors.
+# If not, no coverage report will be created!
+# Param _outputname lcov output is generated as _outputname.info
+# HTML report is generated in _outputname/index.html
+# Optional fourth parameter is passed as arguments to _testrunner
+# Pass them in list form, e.g.: "-j;2" for -j 2
+FUNCTION(SETUP_TARGET_FOR_COVERAGE _targetname _testrunner _outputname)
+
+ IF(NOT LCOV_PATH)
+ MESSAGE(FATAL_ERROR "lcov not found! Aborting...")
+ ENDIF() # NOT LCOV_PATH
+
+ IF(NOT GENHTML_PATH)
+ MESSAGE(FATAL_ERROR "genhtml not found! Aborting...")
+ ENDIF() # NOT GENHTML_PATH
+
+ # Setup target
+ ADD_CUSTOM_TARGET(${_targetname}
+
+ # Cleanup lcov
+ ${LCOV_PATH} --directory . --zerocounters
+
+ # Run tests
+ COMMAND ${_testrunner} ${ARGV3}
+
+ # Capturing lcov counters and generating report
+ COMMAND ${LCOV_PATH} --directory . --capture --output-file ${_outputname}.info
+ COMMAND ${LCOV_PATH} --remove ${_outputname}.info 'tests/*' '/usr/*' --output-file ${_outputname}.info.cleaned
+ COMMAND ${GENHTML_PATH} -o ${_outputname} ${_outputname}.info.cleaned
+ COMMAND ${CMAKE_COMMAND} -E remove ${_outputname}.info ${_outputname}.info.cleaned
+
+ WORKING_DIRECTORY ${CMAKE_BINARY_DIR}
+ COMMENT "Resetting code coverage counters to zero.\nProcessing code coverage counters and generating report."
+ )
+
+ # Show info where to find the report
+ ADD_CUSTOM_COMMAND(TARGET ${_targetname} POST_BUILD
+ COMMAND ;
+ COMMENT "Open ./${_outputname}/index.html in your browser to view the coverage report."
+ )
+
+ENDFUNCTION() # SETUP_TARGET_FOR_COVERAGE
+
+# Param _targetname The name of new the custom make target
+# Param _testrunner The name of the target which runs the tests
+# Param _outputname cobertura output is generated as _outputname.xml
+# Optional fourth parameter is passed as arguments to _testrunner
+# Pass them in list form, e.g.: "-j;2" for -j 2
+FUNCTION(SETUP_TARGET_FOR_COVERAGE_COBERTURA _targetname _testrunner _outputname)
+
+ IF(NOT PYTHON_EXECUTABLE)
+ MESSAGE(FATAL_ERROR "Python not found! Aborting...")
+ ENDIF() # NOT PYTHON_EXECUTABLE
+
+ IF(NOT GCOVR_PATH)
+ MESSAGE(FATAL_ERROR "gcovr not found! Aborting...")
+ ENDIF() # NOT GCOVR_PATH
+
+ ADD_CUSTOM_TARGET(${_targetname}
+
+ # Run tests
+ ${_testrunner} ${ARGV3}
+
+ # Running gcovr
+ COMMAND ${GCOVR_PATH} -x -r ${CMAKE_SOURCE_DIR} -e '${CMAKE_SOURCE_DIR}/tests/' -o ${_outputname}.xml
+ WORKING_DIRECTORY ${CMAKE_BINARY_DIR}
+ COMMENT "Running gcovr to produce Cobertura code coverage report."
+ )
+
+ # Show info where to find the report
+ ADD_CUSTOM_COMMAND(TARGET ${_targetname} POST_BUILD
+ COMMAND ;
+ COMMENT "Cobertura code coverage report saved in ${_outputname}.xml."
+ )
+ENDFUNCTION() # SETUP_TARGET_FOR_COVERAGE_COBERTURA
--- /dev/null
+##Copyright (C) johnfettig.
+##All rights reserved.
+##
+##Redistribution and use in source and binary forms, with or without modification,
+##are permitted provided that the following conditions are met:
+##
+##* Redistributions of source code must retain the above copyright notice, this
+## list of conditions and the following disclaimer.
+##
+##* Redistributions in binary form must reproduce the above copyright notice, this
+## list of conditions and the following disclaimer in the documentation and/or
+## other materials provided with the distribution.
+##
+##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+##ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+##WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
+##ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+##(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+##LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+##ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+##(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+##SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+# CorrectWindowsPaths - this module defines one macro
+#
+# CONVERT_CYGWIN_PATH( PATH )
+# This uses the command cygpath (provided by cygwin) to convert
+# unix-style paths into paths useable by cmake on windows
+
+macro (CONVERT_CYGWIN_PATH _path)
+ if (WIN32)
+ EXECUTE_PROCESS(COMMAND cygpath.exe -m ${${_path}}
+ OUTPUT_VARIABLE ${_path})
+ string (STRIP ${${_path}} ${_path})
+ endif (WIN32)
+endmacro (CONVERT_CYGWIN_PATH)
+
--- /dev/null
+##Copyright (C) arthurtalpaert.
+##All rights reserved.
+##
+##Redistribution and use in source and binary forms, with or without modification,
+##are permitted provided that the following conditions are met:
+##
+##* Redistributions of source code must retain the above copyright notice, this
+## list of conditions and the following disclaimer.
+##
+##* Redistributions in binary form must reproduce the above copyright notice, this
+## list of conditions and the following disclaimer in the documentation and/or
+## other materials provided with the distribution.
+##
+##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+##ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+##WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
+##ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+##(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+##LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+##ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+##(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+##SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+# - Try to find CDMATH
+# Once done this will define
+#
+# CDMATH_FOUND - system has CDMATH
+# CDMATH_INCLUDES - the CDMATH include directories
+# CDMATH_LIBRARIES - Link these to use CDMATH
+#
+# Usage:
+# find_package(CDMATH)
+#
+# Setting these changes the behavior of the search:
+# CDMATH_DIR - directory in which CDMATH resides
+#
+# Redistribution and use is allowed according to the terms of the BSD license.
+# For details see the accompanying COPYING-CMAKE-SCRIPTS file.
+#
+
+find_path (CDMATH_DIR include/CdmathException.hxx
+ HINTS ENV CDMATH_DIR
+ PATHS
+ /usr
+ $ENV{HOME}/cdmath
+ $ENV{HOME}/workspace/cdmath_install
+ DOC "CDMATH Directory")
+message (STATUS "Found CDMATH: ${CDMATH_DIR}")
+
+# Include directories
+set(MED_INCLUDES $ENV{MEDFILE_INCLUDE_DIRS})
+if (NOT (IS_DIRECTORY ${MED_INCLUDES}) )
+ message (SEND_ERROR "MED_INCLUDES can not be used, ${MED_INCLUDES} does not exist.")
+endif ()
+set(MEDCOUPLING_INCLUDES $ENV{MEDCOUPLING_INCLUDE_DIR})
+if (NOT (IS_DIRECTORY ${MEDCOUPLING_INCLUDES}) )
+ message (SEND_ERROR "MEDCOUPLING_INCLUDES can not be used, ${MEDCOUPLING_INCLUDES} does not exist.")
+endif ()
+# This sets the variable ${CDMATH_INCLUDES}.
+set(CDMATH_INCLUDES ${CDMATH_DIR}/include ${MED_INCLUDES} ${MEDCOUPLING_INCLUDES} )
+if (NOT (IS_DIRECTORY ${CDMATH_DIR}/include) )
+ message (SEND_ERROR "CDMATH_INCLUDES can not be used, ${CDMATH_DIR}/include does not exist.")
+endif ()
+
+# CDMATH libraries against which to link
+# This sets the variable ${CDMATH_LIBRARIES}.
+set(CDMATH_LIBDIR ${CDMATH_DIR}/lib)
+if ( NOT (IS_DIRECTORY ${CDMATH_LIBDIR}) )
+ message (SEND_ERROR "CDMATH_LIBDIR can not be used, ${CDMATH_LIBDIR} does not exist.")
+endif ()
+find_library (CDMATHBASE_LIB NAMES base PATHS ${CDMATH_LIBDIR})
+find_library (CDMATHMESH_LIB NAMES mesh PATHS ${CDMATH_LIBDIR})
+find_library (CDMATHLINEARSOLVER_LIB NAMES linearsolver PATHS ${CDMATH_LIBDIR})
+find_library (MEDC_LIB NAMES medC PATHS $ENV{MEDFILE_ROOT_DIR}/lib)
+find_library (MEDLOADER_LIB NAMES medloader PATHS $ENV{MEDCOUPLING_LIBRARIES})
+find_library (MEDCOUPLING_LIB NAMES medcoupling PATHS $ENV{MEDCOUPLING_LIBRARIES})
+set (CDMATH_LIBRARIES
+ ${MEDC_LIB}
+ ${MEDLOADER_LIB}
+ ${MEDCOUPLING_LIB}
+ ${CDMATHBASE_LIB}
+ ${CDMATHMESH_LIB}
+ ${CDMATHLINEARSOLVER_LIB}
+ )
--- /dev/null
+# Copyright (C) 2007-2012 CEA/DEN, EDF R&D, OPEN CASCADE
+#
+# Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN,
+# CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS
+#
+# This library is free software; you can redistribute it and/or
+# modify it under the terms of the GNU Lesser General Public
+# License as published by the Free Software Foundation; either
+# version 2.1 of the License.
+#
+# This library is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this library; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+#
+# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
+#
+
+# ------
+
+MESSAGE(STATUS "Check for cppunit ...")
+
+# ------
+
+IF(CPPUNIT_IS_MANDATORY STREQUAL 0)
+ SET(CPPUNIT_IS_MANDATORY 0)
+ SET(CPPUNIT_IS_OPTIONAL 1)
+ENDIF(CPPUNIT_IS_MANDATORY STREQUAL 0)
+IF(CPPUNIT_IS_OPTIONAL STREQUAL 0)
+ SET(CPPUNIT_IS_MANDATORY 1)
+ SET(CPPUNIT_IS_OPTIONAL 0)
+ENDIF(CPPUNIT_IS_OPTIONAL STREQUAL 0)
+IF(NOT CPPUNIT_IS_MANDATORY AND NOT CPPUNIT_IS_OPTIONAL)
+ SET(CPPUNIT_IS_MANDATORY 0)
+ SET(CPPUNIT_IS_OPTIONAL 1)
+ENDIF(NOT CPPUNIT_IS_MANDATORY AND NOT CPPUNIT_IS_OPTIONAL)
+
+# ------
+
+SET(CPPUNIT_STATUS 1)
+IF(WITHOUT_CPPUNIT OR WITH_CPPUNIT STREQUAL 0)
+ SET(CPPUNIT_STATUS 0)
+ MESSAGE(STATUS "cppunit disabled from command line.")
+ENDIF(WITHOUT_CPPUNIT OR WITH_CPPUNIT STREQUAL 0)
+
+# ------
+
+IF(CPPUNIT_STATUS)
+ IF(WITH_CPPUNIT)
+ SET(CPPUNIT_ROOT_USER ${WITH_CPPUNIT})
+ ELSE(WITH_CPPUNIT)
+ SET(CPPUNIT_ROOT_USER $ENV{CPPUNIT_ROOT})
+ ENDIF(WITH_CPPUNIT)
+ENDIF(CPPUNIT_STATUS)
+
+# -----
+
+IF(CPPUNIT_STATUS)
+ IF(CPPUNIT_ROOT_USER)
+ SET(CPPUNIT_FIND_PATHS_OPTION NO_DEFAULT_PATH)
+ ELSE(CPPUNIT_ROOT_USER)
+ SET(CPPUNIT_FIND_PATHS_OPTION)
+ ENDIF(CPPUNIT_ROOT_USER)
+ENDIF(CPPUNIT_STATUS)
+
+# -----
+
+IF(CPPUNIT_STATUS)
+ IF(CPPUNIT_ROOT_USER)
+ SET(CPPUNIT_INCLUDE_PATHS ${CPPUNIT_ROOT_USER} ${CPPUNIT_ROOT_USER}/include)
+ ELSE(CPPUNIT_ROOT_USER)
+ SET(CPPUNIT_INCLUDE_PATHS)
+ ENDIF(CPPUNIT_ROOT_USER)
+ SET(CPPUNIT_INCLUDE_TO_FIND cppunit/extensions/HelperMacros.h)
+ FIND_PATH(CPPUNIT_INCLUDE_DIR ${CPPUNIT_INCLUDE_TO_FIND} PATHS ${CPPUNIT_INCLUDE_PATHS} ${CPPUNIT_FIND_PATHS_OPTION})
+ IF(CPPUNIT_INCLUDE_DIR)
+ IF(CPPUNIT_ROOT_USER)
+ SET(CPPUNIT_INCLUDES -I${CPPUNIT_INCLUDE_DIR})# to be removed
+ IF(${CPPUNIT_INCLUDE_DIR} STREQUAL /usr/include)
+ SET(CPPUNIT_INCLUDE_DIRS)
+ ELSE(${CPPUNIT_INCLUDE_DIR} STREQUAL /usr/include)
+ SET(CPPUNIT_INCLUDE_DIRS ${CPPUNIT_INCLUDE_DIR})
+ ENDIF(${CPPUNIT_INCLUDE_DIR} STREQUAL /usr/include)
+ ENDIF(CPPUNIT_ROOT_USER)
+ MESSAGE(STATUS "${CPPUNIT_INCLUDE_TO_FIND} found in ${CPPUNIT_INCLUDE_DIR}")
+ ELSE(CPPUNIT_INCLUDE_DIR)
+ SET(CPPUNIT_STATUS 0)
+ IF(CPPUNIT_ROOT_USER)
+ MESSAGE(STATUS "${CPPUNIT_INCLUDE_TO_FIND} not found in ${CPPUNIT_INCLUDE_PATHS}, check your CPPUNIT installation.")
+ ELSE(CPPUNIT_ROOT_USER)
+ MESSAGE(STATUS "${CPPUNIT_INCLUDE_TO_FIND} not found on system, try to use WITH_CPPUNIT option or CPPUNIT_ROOT environment variable.")
+ ENDIF(CPPUNIT_ROOT_USER)
+ ENDIF(CPPUNIT_INCLUDE_DIR)
+ENDIF(CPPUNIT_STATUS)
+
+# ----
+
+IF(CPPUNIT_STATUS)
+ IF(CPPUNIT_ROOT_USER)
+ SET(CPPUNIT_LIB_PATHS ${CPPUNIT_ROOT_USER}/lib)
+ ELSE(CPPUNIT_ROOT_USER)
+ SET(CPPUNIT_LIB_PATHS)
+ ENDIF(CPPUNIT_ROOT_USER)
+ENDIF(CPPUNIT_STATUS)
+
+IF(CPPUNIT_STATUS)
+ IF(WINDOWS)
+ IF(CMAKE_BUILD_TYPE STREQUAL Debug)
+ FIND_LIBRARY(CPPUNIT_LIB cppunitd_dll PATHS ${CPPUNIT_LIB_PATHS} ${CPPUNIT_FIND_PATHS_OPTION})
+ ELSE(CMAKE_BUILD_TYPE STREQUAL Debug)
+ FIND_LIBRARY(CPPUNIT_LIB cppunit_dll PATHS ${CPPUNIT_LIB_PATHS} ${CPPUNIT_FIND_PATHS_OPTION})
+ ENDIF(CMAKE_BUILD_TYPE STREQUAL Debug)
+ ELSE(WINDOWS)
+ FIND_LIBRARY(CPPUNIT_LIB cppunit PATHS ${CPPUNIT_LIB_PATHS} ${CPPUNIT_FIND_PATHS_OPTION})
+ ENDIF(WINDOWS)
+ SET(CPPUNIT_LIBS)
+ IF(CPPUNIT_LIB)
+ SET(CPPUNIT_LIBS ${CPPUNIT_LIBS} ${CPPUNIT_LIB})
+ MESSAGE(STATUS "cppunit lib found: ${CPPUNIT_LIB}")
+ ELSE(CPPUNIT_LIB)
+ SET(CPPUNIT_STATUS 0)
+ IF(CPPUNIT_ROOT_USER)
+ MESSAGE(STATUS "cppunit lib not found in ${CPPUNIT_LIB_PATHS}, check your CPPUNIT installation.")
+ ELSE(CPPUNIT_ROOT_USER)
+ MESSAGE(STATUS "cppunit lib not found on system, try to use WITH_CPPUNIT option or CPPUNIT_ROOT environment variable.")
+ ENDIF(CPPUNIT_ROOT_USER)
+ ENDIF(CPPUNIT_LIB)
+ENDIF(CPPUNIT_STATUS)
+
+# ----
+
+IF(CPPUNIT_STATUS)
+ SET(CPPUNIT_IS_OK 1)
+ SET(CPPUNIT_DEFINITIONS)
+ IF(WINDOWS)
+ SET(CPPUNIT_INCLUDES ${CPPUNIT_INCLUDES} -DCPPUNIT_DLL)
+ SET(CPPUNIT_DEFINITIONS "-DCPPUNIT_DLL")
+ ENDIF(WINDOWS)
+ELSE(CPPUNIT_STATUS)
+ IF(CPPUNIT_IS_MANDATORY)
+ MESSAGE(FATAL_ERROR "cppunit not found ... mandatory ... abort")
+ ELSE(CPPUNIT_IS_MANDATORY)
+ MESSAGE(STATUS "cppunit not found ... optional ... disabled")
+ ENDIF(CPPUNIT_IS_MANDATORY)
+ENDIF(CPPUNIT_STATUS)
+
+# ------
--- /dev/null
+# - Find MED file installation
+#
+# The following variable are set:
+# MEDFILE_INCLUDE_DIRS
+# MEDFILE_LIBRARIES
+# MEDFILE_C_LIBRARIES
+# MEDFILE_F_LIBRARIES
+#
+# The CMake (or environment) variable MEDFILE_ROOT_DIR can be set to
+# guide the detection and indicate a root directory to look into.
+#
+############################################################################
+# Copyright (C) 2007-2019 CEA/DEN, EDF R&D, OPEN CASCADE
+#
+# This library is free software; you can redistribute it and/or
+# modify it under the terms of the GNU Lesser General Public
+# License as published by the Free Software Foundation; either
+# version 2.1 of the License, or (at your option) any later version.
+#
+# This library is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this library; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+#
+# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
+#
+
+# ------
+
+MESSAGE(STATUS "Check for medfile ...")
+
+# ------
+
+SET(MEDFILE_ROOT_DIR $ENV{MEDFILE_ROOT_DIR} CACHE PATH "Path to the MEDFile.")
+IF(MEDFILE_ROOT_DIR)
+ LIST(APPEND CMAKE_PREFIX_PATH "${MEDFILE_ROOT_DIR}")
+ENDIF(MEDFILE_ROOT_DIR)
+
+FIND_PATH(MEDFILE_INCLUDE_DIRS med.h)
+#FIND_PROGRAM(MDUMP mdump)
+FIND_LIBRARY(MEDFILE_C_LIBRARIES NAMES medC)
+FIND_LIBRARY(MEDFILE_F_LIBRARIES NAMES med)
+IF(MEDFILE_F_LIBRARIES)
+ SET(MEDFILE_LIBRARIES ${MEDFILE_C_LIBRARIES} ${MEDFILE_F_LIBRARIES})
+ELSE(MEDFILE_F_LIBRARIES)
+ SET(MEDFILE_LIBRARIES ${MEDFILE_C_LIBRARIES})
+ENDIF(MEDFILE_F_LIBRARIES)
+
+INCLUDE(FindPackageHandleStandardArgs)
+FIND_PACKAGE_HANDLE_STANDARD_ARGS(MEDFile REQUIRED_VARS MEDFILE_INCLUDE_DIRS MEDFILE_LIBRARIES)
--- /dev/null
+# - Find the matplotlib libraries
+# This module finds IF matplotlib is installed, and sets the following variables
+# indicating where it is.
+#
+# MATPLOTLIB_FOUND - was matplotlib found
+# MATPLOTLIB_VERSION - the version of matplotlib found as a string
+# MATPLOTLIB_VERSION_MAJOR - the major version number of matplotlib
+# MATPLOTLIB_VERSION_MINOR - the minor version number of matplotlib
+# MATPLOTLIB_VERSION_PATCH - the patch version number of matplotlib
+# MATPLOTLIB_PATH_DIRS - path to the matplotlib include files
+
+IF(PYTHONINTERP_FOUND)
+ # Try to import matplotlib into Python interpreter. Python
+ # interpreter was found previously as required package, so
+ # don't take care about this.
+ execute_process(COMMAND "${PYTHON_EXECUTABLE}" "-c"
+ "import matplotlib as m; print(m.__version__); print(m.__path__[0]);"
+ RESULT_VARIABLE _MATPLOTLIB_SEARCH_SUCCESS
+ OUTPUT_VARIABLE _MATPLOTLIB_VALUES
+ ERROR_VARIABLE _MATPLOTLIB_ERROR_VALUE
+ OUTPUT_STRIP_TRAILING_WHITESPACE)
+
+ IF(_MATPLOTLIB_SEARCH_SUCCESS MATCHES 0)
+ set(MATPLOTLIB_FOUND TRUE)
+
+ # Convert the process output into a list
+ string(REGEX REPLACE ";" "\\\\;" _MATPLOTLIB_VALUES ${_MATPLOTLIB_VALUES})
+ string(REGEX REPLACE "\n" ";" _MATPLOTLIB_VALUES ${_MATPLOTLIB_VALUES})
+ list(GET _MATPLOTLIB_VALUES 0 MATPLOTLIB_VERSION)
+ list(GET _MATPLOTLIB_VALUES 1 MATPLOTLIB_PATH_DIRS)
+
+ # Make sure all directory separators are '/'
+ string(REGEX REPLACE "\\\\" "/" MATPLOTLIB_PATH_DIRS ${MATPLOTLIB_PATH_DIRS})
+
+ # Get the major and minor version numbers
+ string(REGEX REPLACE "\\." ";" _MATPLOTLIB_VERSION_LIST ${MATPLOTLIB_VERSION})
+ list(GET _MATPLOTLIB_VERSION_LIST 0 MATPLOTLIB_VERSION_MAJOR)
+ list(GET _MATPLOTLIB_VERSION_LIST 1 MATPLOTLIB_VERSION_MINOR)
+ list(GET _MATPLOTLIB_VERSION_LIST 2 MATPLOTLIB_VERSION_PATCH)
+ ELSE()
+ set(MATPLOTLIB_FOUND FALSE)
+ ENDIF()
+ELSE()
+ set(MATPLOTLIB_FOUND FALSE)
+ENDIF()
+
--- /dev/null
+# - Try to find PETSc
+# Once done this will define
+#
+# PETSC_FOUND - system has PETSc
+# PETSC_INCLUDES - the PETSc include directories
+# PETSC_LIBRARIES - Link these to use PETSc
+# PETSC_COMPILER - Compiler used by PETSc, helpful to find a compatible MPI
+# PETSC_DEFINITIONS - Compiler switches for using PETSc
+# PETSC_MPIEXEC - Executable for running MPI programs
+# PETSC_VERSION - Version string (MAJOR.MINOR.SUBMINOR)
+#
+# Usage:
+# find_package(PETSc COMPONENTS CXX) - required if build --with-clanguage=C++ --with-c-support=0
+# find_package(PETSc COMPONENTS C) - standard behavior of checking build using a C compiler
+# find_package(PETSc) - same as above
+#
+# Setting these changes the behavior of the search
+# PETSC_DIR - directory in which PETSc resides
+# PETSC_ARCH - build architecture
+#
+# Redistribution and use is allowed according to the terms of the BSD license.
+# For details see the accompanying COPYING-CMAKE-SCRIPTS file.
+#
+
+set(PETSC_VALID_COMPONENTS
+ C
+ CXX)
+
+if(NOT PETSc_FIND_COMPONENTS)
+ set(PETSC_LANGUAGE_BINDINGS "C")
+else()
+ # Right now, this is designed for compatability with the --with-clanguage option, so
+ # only allow one item in the components list.
+ list(LENGTH ${PETSc_FIND_COMPONENTS} components_length)
+ if(${components_length} GREATER 1)
+ message(FATAL_ERROR "Only one component for PETSc is allowed to be specified")
+ endif()
+ # This is a stub for allowing multiple components should that time ever come. Perhaps
+ # to also test Fortran bindings?
+ foreach(component ${PETSc_FIND_COMPONENTS})
+ list(FIND PETSC_VALID_COMPONENTS ${component} component_location)
+ if(${component_location} EQUAL -1)
+ message(FATAL_ERROR "\"${component}\" is not a valid PETSc component.")
+ else()
+ list(APPEND PETSC_LANGUAGE_BINDINGS ${component})
+ endif()
+ endforeach()
+endif()
+
+function (petsc_get_version)
+ if (EXISTS "${PETSC_DIR}/petscversion.h" OR EXISTS "${PETSC_DIR}/include/petscversion.h" OR EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h")
+ if (EXISTS "${PETSC_DIR}/include/petscversion.h")
+ file (STRINGS "${PETSC_DIR}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
+ elseif( EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h" )
+ file (STRINGS "${PETSC_DIR}/${PETSC_ARCH}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
+ else()
+ file (STRINGS "${PETSC_DIR}/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
+ endif()
+ foreach (line ${vstrings})
+ string (REGEX REPLACE " +" ";" fields ${line}) # break line into three fields (the first is always "#define")
+ list (GET fields 1 var)
+ list (GET fields 2 val)
+ set (${var} ${val} PARENT_SCOPE)
+ set (${var} ${val}) # Also in local scope so we have access below
+ endforeach ()
+
+ if (PETSC_VERSION_RELEASE)
+ set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}p${PETSC_VERSION_PATCH}" PARENT_SCOPE)
+ else ()
+ # make dev version compare higher than any patch level of a released version
+ set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}.99" PARENT_SCOPE)
+ endif ()
+ else ()
+ message (SEND_ERROR "PETSC_DIR can not be used, file ${PETSC_DIR}/include/petscversion.h does not exist")
+ endif ()
+endfunction ()
+
+find_path (PETSC_DIR include/petsc.h
+ HINTS ENV PETSC_DIR
+ PATHS
+ #RedHat paths
+ /usr/include/petsc
+ # Debian paths
+ /usr/lib/petscdir/3.12.4 /usr/lib/petscdir/3.12 #Ubuntu 20.04
+ /usr/lib/petscdir/3.7.6 /usr/lib/petscdir/3.7 #Ubuntu 18.04
+ /usr/lib/petscdir/3.6.2 /usr/lib/petscdir/3.6 #Ubuntu 16.04
+ /usr/lib/petscdir/3.5.1 /usr/lib/petscdir/3.5
+ /usr/lib/petscdir/3.4.2 /usr/lib/petscdir/3.4
+ /usr/lib/petscdir/3.3 /usr/lib/petscdir/3.2 /usr/lib/petscdir/3.1
+ /usr/lib/petscdir/3.0.0 /usr/lib/petscdir/2.3.3 /usr/lib/petscdir/2.3.2
+ # MacPorts path
+ /opt/local/lib/petsc
+ $ENV{HOME}/petsc
+ DOC "PETSc Directory")
+
+find_program (MAKE_EXECUTABLE NAMES make gmake)
+
+if (PETSC_DIR AND NOT PETSC_ARCH)
+ set (_petsc_arches
+ $ENV{PETSC_ARCH} # If set, use environment variable first
+ linux-gnu-c-debug linux-gnu-c-opt # old Debian defaults (petsc compilation)
+ arch-linux-c-opt or arch-linux-c-debug # new Debian defaults (petsc compilation)
+ x86_64-linux-gnu-real i686-linux-gnu-real # Debian defaults (petsc system installation)
+ arch-linux2-c-opt or arch-linux2-c-debug # old RedHat defaults (petsc compilation)
+ x86_64-redhat-linux-gnu i686-redhat-linux-gnu # RedHat defaults (petsc apt installation)
+ x86_64-unknown-linux-gnu i386-unknown-linux-gnu)
+ set (petscconf "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
+ foreach (arch ${_petsc_arches})
+ if (NOT PETSC_ARCH)
+ find_path (petscconf petscconf.h
+ HINTS ${PETSC_DIR}
+ PATH_SUFFIXES ${arch}/include bmake/${arch}
+ NO_DEFAULT_PATH)
+ if (petscconf)
+ set (PETSC_ARCH "${arch}" CACHE STRING "PETSc build architecture")
+ endif (petscconf)
+ endif (NOT PETSC_ARCH)
+ endforeach (arch)
+ set (petscconf "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
+endif (PETSC_DIR AND NOT PETSC_ARCH)
+
+set (petsc_slaves LIBRARIES_SYS LIBRARIES_VEC LIBRARIES_MAT LIBRARIES_DM LIBRARIES_KSP LIBRARIES_SNES LIBRARIES_TS
+ INCLUDE_DIR INCLUDE_CONF)
+include (FindPackageMultipass)
+find_package_multipass (PETSc petsc_config_current
+ STATES DIR ARCH
+ DEPENDENTS INCLUDES LIBRARIES COMPILER MPIEXEC ${petsc_slaves})
+
+# Determine whether the PETSc layout is old-style (through 2.3.3) or
+# new-style (>= 3.0.0)
+if (EXISTS "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/petscvariables") # > 3.5
+ set (petsc_conf_rules "${PETSC_DIR}/lib/petsc/conf/rules")
+ set (petsc_conf_variables "${PETSC_DIR}/lib/petsc/conf/variables")
+elseif (EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscconf.h") # > 2.3.3
+ set (petsc_conf_rules "${PETSC_DIR}/conf/rules")
+ set (petsc_conf_variables "${PETSC_DIR}/conf/variables")
+elseif (EXISTS "${PETSC_DIR}/bmake/${PETSC_ARCH}/petscconf.h") # <= 2.3.3
+ set (petsc_conf_rules "${PETSC_DIR}/bmake/common/rules")
+ set (petsc_conf_variables "${PETSC_DIR}/bmake/common/variables")
+elseif (PETSC_DIR)
+ message (SEND_ERROR "The pair PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} do not specify a valid PETSc installation")
+endif ()
+
+if (petsc_conf_rules AND petsc_conf_variables AND NOT petsc_config_current)
+ petsc_get_version()
+
+ # Put variables into environment since they are needed to get
+ # configuration (petscvariables) in the PETSc makefile
+ set (ENV{PETSC_DIR} "${PETSC_DIR}")
+ set (ENV{PETSC_ARCH} "${PETSC_ARCH}")
+
+ # A temporary makefile to probe the PETSc configuration
+ set (petsc_config_makefile "${PROJECT_BINARY_DIR}/Makefile.petsc")
+ file (WRITE "${petsc_config_makefile}"
+"## This file was autogenerated by FindPETSc.cmake
+# PETSC_DIR = ${PETSC_DIR}
+# PETSC_ARCH = ${PETSC_ARCH}
+include ${petsc_conf_rules}
+include ${petsc_conf_variables}
+show :
+\t-@echo -n \${\${VARIABLE}}
+")
+
+ macro (PETSC_GET_VARIABLE name var)
+ set (${var} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
+ execute_process (COMMAND ${MAKE_EXECUTABLE} --no-print-directory -f ${petsc_config_makefile} show VARIABLE=${name}
+ OUTPUT_VARIABLE ${var}
+ RESULT_VARIABLE petsc_return)
+ endmacro (PETSC_GET_VARIABLE)
+ petsc_get_variable (PETSC_LIB_DIR petsc_lib_dir)
+ petsc_get_variable (PETSC_EXTERNAL_LIB_BASIC petsc_libs_external)
+ petsc_get_variable (PETSC_CCPPFLAGS petsc_cpp_line)
+ petsc_get_variable (PETSC_INCLUDE petsc_include)
+ petsc_get_variable (PCC petsc_cc)
+ petsc_get_variable (PCC_FLAGS petsc_cc_flags)
+ petsc_get_variable (MPIEXEC petsc_mpiexec)
+ # We are done with the temporary Makefile, calling PETSC_GET_VARIABLE after this point is invalid!
+ file (REMOVE ${petsc_config_makefile})
+
+ include (ResolveCompilerPaths)
+ # Extract include paths and libraries from compile command line
+ resolve_includes (petsc_includes_all "${petsc_cpp_line}")
+
+ #on windows we need to make sure we're linking against the right
+ #runtime library
+ if (WIN32)
+ if (petsc_cc_flags MATCHES "-MT")
+ set(using_md False)
+ foreach(flag_var
+ CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE
+ CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_RELWITHDEBINFO
+ CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE
+ CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_RELWITHDEBINFO)
+ if(${flag_var} MATCHES "/MD")
+ set(using_md True)
+ endif(${flag_var} MATCHES "/MD")
+ endforeach(flag_var)
+ if(${using_md} MATCHES "True")
+ message(WARNING "PETSc was built with /MT, but /MD is currently set.
+ See http://www.cmake.org/Wiki/CMake_FAQ#How_can_I_build_my_MSVC_application_with_a_static_runtime.3F")
+ endif(${using_md} MATCHES "True")
+ endif (petsc_cc_flags MATCHES "-MT")
+ endif (WIN32)
+
+ include (CorrectWindowsPaths)
+ convert_cygwin_path(petsc_lib_dir)
+ message (STATUS "petsc_lib_dir ${petsc_lib_dir}")
+
+ macro (PETSC_FIND_LIBRARY suffix name)
+ set (PETSC_LIBRARY_${suffix} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE) # Clear any stale value, if we got here, we need to find it again
+ if (WIN32)
+ set (libname lib${name}) #windows expects "libfoo", linux expects "foo"
+ else (WIN32)
+ set (libname ${name})
+ endif (WIN32)
+ find_library (PETSC_LIBRARY_${suffix} NAMES ${libname} HINTS ${petsc_lib_dir} NO_DEFAULT_PATH)
+ set (PETSC_LIBRARIES_${suffix} "${PETSC_LIBRARY_${suffix}}")
+ mark_as_advanced (PETSC_LIBRARY_${suffix})
+ endmacro (PETSC_FIND_LIBRARY suffix name)
+
+ # Look for petscvec first, if it doesn't exist, we must be using single-library
+ petsc_find_library (VEC petscvec)
+ if (PETSC_LIBRARY_VEC)
+ petsc_find_library (SYS "petscsys;petsc") # libpetscsys is called libpetsc prior to 3.1 (when single-library was introduced)
+ petsc_find_library (MAT petscmat)
+ petsc_find_library (DM petscdm)
+ petsc_find_library (KSP petscksp)
+ petsc_find_library (SNES petscsnes)
+ petsc_find_library (TS petscts)
+ macro (PETSC_JOIN libs deps)
+ list (APPEND PETSC_LIBRARIES_${libs} ${PETSC_LIBRARIES_${deps}})
+ endmacro (PETSC_JOIN libs deps)
+ petsc_join (VEC SYS)
+ petsc_join (MAT VEC)
+ petsc_join (DM MAT)
+ petsc_join (KSP DM)
+ petsc_join (SNES KSP)
+ petsc_join (TS SNES)
+ petsc_join (ALL TS)
+ else ()
+ set (PETSC_LIBRARY_VEC "NOTFOUND" CACHE INTERNAL "Cleared" FORCE) # There is no libpetscvec
+ petsc_find_library (SINGLE petsc) #check existence of libpetsc.so
+ if (NOT PETSC_LIBRARY_SINGLE)
+ petsc_find_library (SINGLE petsc_real) #check existence of libpetsc_real.so
+ endif()
+ if (NOT PETSC_LIBRARY_SINGLE)
+ petsc_find_library (SINGLE petsc_complex) #check existence of libpetsc_complex.so
+ endif()
+ foreach (pkg SYS VEC MAT DM KSP SNES TS ALL)
+ set (PETSC_LIBRARIES_${pkg} "${PETSC_LIBRARY_SINGLE}")
+ endforeach ()
+ endif ()
+ if (PETSC_LIBRARY_TS)
+ message (STATUS "Recognized PETSc install with separate libraries for each package")
+ else ()
+ message (STATUS "Recognized PETSc install with single library for all packages")
+ endif ()
+
+ include(Check${PETSC_LANGUAGE_BINDINGS}SourceRuns)
+ macro (PETSC_TEST_RUNS includes libraries runs)
+ if(${PETSC_LANGUAGE_BINDINGS} STREQUAL "C")
+ set(_PETSC_ERR_FUNC "CHKERRQ(ierr)")
+ elseif(${PETSC_LANGUAGE_BINDINGS} STREQUAL "CXX")
+ set(_PETSC_ERR_FUNC "CHKERRXX(ierr)")
+ endif()
+ if (PETSC_VERSION VERSION_GREATER 3.1)
+ set (_PETSC_TSDestroy "TSDestroy(&ts)")
+ else ()
+ set (_PETSC_TSDestroy "TSDestroy(ts)")
+ endif ()
+
+ set(_PETSC_TEST_SOURCE "
+static const char help[] = \"PETSc test program.\";
+#include <petscts.h>
+int main(int argc,char *argv[]) {
+ PetscErrorCode ierr;
+ TS ts;
+
+ ierr = PetscInitialize(&argc,&argv,0,help);${_PETSC_ERR_FUNC};
+ ierr = TSCreate(PETSC_COMM_WORLD,&ts);${_PETSC_ERR_FUNC};
+ ierr = TSSetFromOptions(ts);${_PETSC_ERR_FUNC};
+ ierr = ${_PETSC_TSDestroy};${_PETSC_ERR_FUNC};
+ ierr = PetscFinalize();${_PETSC_ERR_FUNC};
+ return 0;
+}
+")
+ multipass_source_runs ("${includes}" "${libraries}" "${_PETSC_TEST_SOURCE}" ${runs} "${PETSC_LANGUAGE_BINDINGS}")
+ if (${${runs}})
+ set (PETSC_EXECUTABLE_RUNS "YES" CACHE BOOL
+ "Can the system successfully run a PETSc executable? This variable can be manually set to \"YES\" to force CMake to accept a given PETSc configuration, but this will almost always result in a broken build. If you change PETSC_DIR, PETSC_ARCH, or PETSC_CURRENT you would have to reset this variable." FORCE)
+ endif (${${runs}})
+ endmacro (PETSC_TEST_RUNS)
+
+
+ find_path (PETSC_INCLUDE_DIR petscts.h HINTS "${PETSC_DIR}" PATH_SUFFIXES include NO_DEFAULT_PATH)
+ find_path (PETSC_INCLUDE_CONF petscconf.h HINTS "${PETSC_DIR}" PATH_SUFFIXES "${PETSC_ARCH}/include" "bmake/${PETSC_ARCH}" NO_DEFAULT_PATH)
+ mark_as_advanced (PETSC_INCLUDE_DIR PETSC_INCLUDE_CONF)
+ set (petsc_includes_minimal ${PETSC_INCLUDE_CONF} ${PETSC_INCLUDE_DIR})
+
+ petsc_test_runs ("${petsc_includes_minimal}" "${PETSC_LIBRARIES_TS}" petsc_works_minimal)
+ if (petsc_works_minimal)
+ message (STATUS "Minimal PETSc includes and libraries work. This probably means we are building with shared libs.")
+ set (petsc_includes_needed "${petsc_includes_minimal}")
+ else (petsc_works_minimal) # Minimal includes fail, see if just adding full includes fixes it
+ petsc_test_runs ("${petsc_includes_all}" "${PETSC_LIBRARIES_TS}" petsc_works_allincludes)
+ if (petsc_works_allincludes) # It does, we just need all the includes (
+ message (STATUS "PETSc requires extra include paths, but links correctly with only interface libraries. This is an unexpected configuration (but it seems to work fine).")
+ set (petsc_includes_needed ${petsc_includes_all})
+ else (petsc_works_allincludes) # We are going to need to link the external libs explicitly
+ resolve_libraries (petsc_libraries_external "${petsc_libs_external}")
+ foreach (pkg SYS VEC MAT DM KSP SNES TS ALL)
+ list (APPEND PETSC_LIBRARIES_${pkg} ${petsc_libraries_external})
+ endforeach (pkg)
+ petsc_test_runs ("${petsc_includes_minimal}" "${PETSC_LIBRARIES_TS}" petsc_works_alllibraries)
+ if (petsc_works_alllibraries)
+ message (STATUS "PETSc only need minimal includes, but requires explicit linking to all dependencies. This is expected when PETSc is built with static libraries.")
+ set (petsc_includes_needed ${petsc_includes_minimal})
+ else (petsc_works_alllibraries)
+ # It looks like we really need everything, should have listened to Matt
+ set (petsc_includes_needed ${petsc_includes_all})
+ petsc_test_runs ("${petsc_includes_all}" "${PETSC_LIBRARIES_TS}" petsc_works_all)
+ if (petsc_works_all) # We fail anyways
+ message (STATUS "PETSc requires extra include paths and explicit linking to all dependencies. This probably means you have static libraries and something unexpected in PETSc headers.")
+ else (petsc_works_all) # We fail anyways
+ message (STATUS "PETSc could not be used, maybe the install is broken.")
+ endif (petsc_works_all)
+ endif (petsc_works_alllibraries)
+ endif (petsc_works_allincludes)
+ endif (petsc_works_minimal)
+
+ # We do an out-of-source build so __FILE__ will be an absolute path, hence __INSDIR__ is superfluous
+ if (${PETSC_VERSION} VERSION_LESS 3.1)
+ set (PETSC_DEFINITIONS "-D__SDIR__=\"\"" CACHE STRING "PETSc definitions" FORCE)
+ else ()
+ set (PETSC_DEFINITIONS "-D__INSDIR__=" CACHE STRING "PETSc definitions" FORCE)
+ endif ()
+ # Sometimes this can be used to assist FindMPI.cmake
+ set (PETSC_MPIEXEC ${petsc_mpiexec} CACHE FILEPATH "Executable for running PETSc MPI programs" FORCE)
+ set (PETSC_INCLUDES ${petsc_includes_needed} CACHE STRING "PETSc include path" FORCE)
+ set (PETSC_LIBRARIES ${PETSC_LIBRARIES_ALL} CACHE STRING "PETSc libraries" FORCE)
+ set (PETSC_COMPILER ${petsc_cc} CACHE FILEPATH "PETSc compiler" FORCE)
+ # Note that we have forced values for all these choices. If you
+ # change these, you are telling the system to trust you that they
+ # work. It is likely that you will end up with a broken build.
+ mark_as_advanced (PETSC_INCLUDES PETSC_LIBRARIES PETSC_COMPILER PETSC_DEFINITIONS PETSC_MPIEXEC PETSC_EXECUTABLE_RUNS)
+endif ()
+
+include (FindPackageHandleStandardArgs)
+find_package_handle_standard_args (PETSc
+ "PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH."
+ PETSC_INCLUDES PETSC_LIBRARIES PETSC_EXECUTABLE_RUNS)
--- /dev/null
+# Distributed under the OSI-approved BSD 3-Clause License. See accompanying
+# file Copyright.txt or https://cmake.org/licensing for details.
+
+#[=======================================================================[.rst:
+FindPython
+----------
+
+Find Python interpreter, compiler and development environment (include
+directories and libraries).
+
+Three components are supported:
+
+* ``Interpreter``: search for Python interpreter.
+* ``Compiler``: search for Python compiler. Only offered by IronPython.
+* ``Development``: search for development artifacts (include directories and
+ libraries).
+
+If no ``COMPONENTS`` is specified, ``Interpreter`` is assumed.
+
+To ensure consistent versions between components ``Interpreter``, ``Compiler``
+and ``Development``, specify all components at the same time::
+
+ find_package (Python COMPONENTS Interpreter Development)
+
+This module looks preferably for version 3 of Python. If not found, version 2
+is searched.
+To manage concurrent versions 3 and 2 of Python, use :module:`FindPython3` and
+:module:`FindPython2` modules rather than this one.
+
+Imported Targets
+^^^^^^^^^^^^^^^^
+
+This module defines the following :ref:`Imported Targets <Imported Targets>`:
+
+``Python::Interpreter``
+ Python interpreter. Target defined if component ``Interpreter`` is found.
+``Python::Compiler``
+ Python compiler. Target defined if component ``Compiler`` is found.
+``Python::Python``
+ Python library. Target defined if component ``Development`` is found.
+
+Result Variables
+^^^^^^^^^^^^^^^^
+
+This module will set the following variables in your project
+(see :ref:`Standard Variable Names <CMake Developer Standard Variable Names>`):
+
+``Python_FOUND``
+ System has the Python requested components.
+``Python_Interpreter_FOUND``
+ System has the Python interpreter.
+``Python_EXECUTABLE``
+ Path to the Python interpreter.
+``Python_INTERPRETER_ID``
+ A short string unique to the interpreter. Possible values include:
+ * Python
+ * ActivePython
+ * Anaconda
+ * Canopy
+ * IronPython
+``Python_STDLIB``
+ Standard platform independent installation directory.
+
+ Information returned by
+ ``distutils.sysconfig.get_python_lib(plat_specific=False,standard_lib=True)``.
+``Python_STDARCH``
+ Standard platform dependent installation directory.
+
+ Information returned by
+ ``distutils.sysconfig.get_python_lib(plat_specific=True,standard_lib=True)``.
+``Python_SITELIB``
+ Third-party platform independent installation directory.
+
+ Information returned by
+ ``distutils.sysconfig.get_python_lib(plat_specific=False,standard_lib=False)``.
+``Python_SITEARCH``
+ Third-party platform dependent installation directory.
+
+ Information returned by
+ ``distutils.sysconfig.get_python_lib(plat_specific=True,standard_lib=False)``.
+``Python_Compiler_FOUND``
+ System has the Python compiler.
+``Python_COMPILER``
+ Path to the Python compiler. Only offered by IronPython.
+``Python_COMPILER_ID``
+ A short string unique to the compiler. Possible values include:
+ * IronPython
+``Python_Development_FOUND``
+ System has the Python development artifacts.
+``Python_INCLUDE_DIRS``
+ The Python include directories.
+``Python_LIBRARIES``
+ The Python libraries.
+``Python_LIBRARY_DIRS``
+ The Python library directories.
+``Python_RUNTIME_LIBRARY_DIRS``
+ The Python runtime library directories.
+``Python_VERSION``
+ Python version.
+``Python_VERSION_MAJOR``
+ Python major version.
+``Python_VERSION_MINOR``
+ Python minor version.
+``Python_VERSION_PATCH``
+ Python patch version.
+
+Hints
+^^^^^
+
+``Python_ROOT_DIR``
+ Define the root directory of a Python installation.
+
+``Python_USE_STATIC_LIBS``
+ * If not defined, search for shared libraries and static libraries in that
+ order.
+ * If set to TRUE, search **only** for static libraries.
+ * If set to FALSE, search **only** for shared libraries.
+
+Commands
+^^^^^^^^
+
+This module defines the command ``Python_add_library`` which have the same
+semantic as :command:`add_library` but take care of Python module naming rules
+(only applied if library is of type ``MODULE``) and add dependency to target
+``Python::Python``::
+
+ Python_add_library (my_module MODULE src1.cpp)
+
+If library type is not specified, ``MODULE`` is assumed.
+#]=======================================================================]
+
+
+set (_PYTHON_PREFIX Python)
+
+if (DEFINED Python_FIND_VERSION)
+ set (_Python_REQUIRED_VERSION_MAJOR ${Python_FIND_VERSION_MAJOR})
+
+ include (${CMAKE_CURRENT_LIST_DIR}/FindPython/Support.cmake)
+else()
+ # iterate over versions in quiet and NOT required modes to avoid multiple
+ # "Found" messages and prematurally failure.
+ set (_Python_QUIETLY ${Python_FIND_QUIETLY})
+ set (_Python_REQUIRED ${Python_FIND_REQUIRED})
+ set (Python_FIND_QUIETLY TRUE)
+ set (Python_FIND_REQUIRED FALSE)
+
+ set (_Python_REQUIRED_VERSIONS 3 2)
+ set (_Python_REQUIRED_VERSION_LAST 2)
+
+ foreach (_Python_REQUIRED_VERSION_MAJOR IN LISTS _Python_REQUIRED_VERSIONS)
+ set (Python_FIND_VERSION ${_Python_REQUIRED_VERSION_MAJOR})
+ include (${CMAKE_CURRENT_LIST_DIR}/FindPython/Support.cmake)
+ if (Python_FOUND OR
+ _Python_REQUIRED_VERSION_MAJOR EQUAL _Python_REQUIRED_VERSION_LAST)
+ break()
+ endif()
+ # clean-up some CACHE variables to ensure look-up restart from scratch
+ foreach (_Python_ITEM IN LISTS _Python_CACHED_VARS)
+ unset (${_Python_ITEM} CACHE)
+ endforeach()
+ endforeach()
+
+ unset (Python_FIND_VERSION)
+
+ set (Python_FIND_QUIETLY ${_Python_QUIETLY})
+ set (Python_FIND_REQUIRED ${_Python_REQUIRED})
+ if (Python_FIND_REQUIRED OR NOT Python_FIND_QUIETLY)
+ # call again validation command to get "Found" or error message
+ find_package_handle_standard_args (Python HANDLE_COMPONENTS
+ REQUIRED_VARS ${_Python_REQUIRED_VARS}
+ VERSION_VAR Python_VERSION)
+ endif()
+endif()
+
+if (COMMAND __Python_add_library)
+ macro (Python_add_library)
+ __Python_add_library (Python ${ARGV})
+ endmacro()
+endif()
+
+unset (_PYTHON_PREFIX)
--- /dev/null
+# PackageMultipass - this module defines two macros
+#
+# FIND_PACKAGE_MULTIPASS (Name CURRENT
+# STATES VAR0 VAR1 ...
+# DEPENDENTS DEP0 DEP1 ...)
+#
+# This function creates a cache entry <UPPERCASED-Name>_CURRENT which
+# the user can set to "NO" to trigger a reconfiguration of the package.
+# The first time this function is called, the values of
+# <UPPERCASED-Name>_VAR0, ... are saved. If <UPPERCASED-Name>_CURRENT
+# is false or if any STATE has changed since the last time
+# FIND_PACKAGE_MULTIPASS() was called, then CURRENT will be set to "NO",
+# otherwise CURRENT will be "YES". IF not CURRENT, then
+# <UPPERCASED-Name>_DEP0, ... will be FORCED to NOTFOUND.
+# Example:
+# find_path (FOO_DIR include/foo.h)
+# FIND_PACKAGE_MULTIPASS (Foo foo_current
+# STATES DIR
+# DEPENDENTS INCLUDES LIBRARIES)
+# if (NOT foo_current)
+# # Make temporary files, run programs, etc, to determine FOO_INCLUDES and FOO_LIBRARIES
+# endif (NOT foo_current)
+#
+# MULTIPASS_SOURCE_RUNS (Name INCLUDES LIBRARIES SOURCE RUNS LANGUAGE)
+# Always runs the given test, use this when you need to re-run tests
+# because parent variables have made old cache entries stale. The LANGUAGE
+# variable is either C or CXX indicating which compiler the test should
+# use.
+# MULTIPASS_C_SOURCE_RUNS (Name INCLUDES LIBRARIES SOURCE RUNS)
+# DEPRECATED! This is only included for backwards compatability. Use
+# the more general MULTIPASS_SOURCE_RUNS instead.
+# Always runs the given test, use this when you need to re-run tests
+# because parent variables have made old cache entries stale.
+
+macro (FIND_PACKAGE_MULTIPASS _name _current)
+ string (TOUPPER ${_name} _NAME)
+ set (_args ${ARGV})
+ list (REMOVE_AT _args 0 1)
+
+ set (_states_current "YES")
+ list (GET _args 0 _cmd)
+ if (_cmd STREQUAL "STATES")
+ list (REMOVE_AT _args 0)
+ list (GET _args 0 _state)
+ while (_state AND NOT _state STREQUAL "DEPENDENTS")
+ # The name of the stored value for the given state
+ set (_stored_var PACKAGE_MULTIPASS_${_NAME}_${_state})
+ if (NOT "${${_stored_var}}" STREQUAL "${${_NAME}_${_state}}")
+ set (_states_current "NO")
+ endif (NOT "${${_stored_var}}" STREQUAL "${${_NAME}_${_state}}")
+ set (${_stored_var} "${${_NAME}_${_state}}" CACHE INTERNAL "Stored state for ${_name}." FORCE)
+ list (REMOVE_AT _args 0)
+ list (GET _args 0 _state)
+ endwhile (_state AND NOT _state STREQUAL "DEPENDENTS")
+ endif (_cmd STREQUAL "STATES")
+
+ set (_stored ${_NAME}_CURRENT)
+ if (NOT ${_stored})
+ set (${_stored} "YES" CACHE BOOL "Is the configuration for ${_name} current? Set to \"NO\" to reconfigure." FORCE)
+ set (_states_current "NO")
+ endif (NOT ${_stored})
+
+ set (${_current} ${_states_current})
+ if (NOT ${_current} AND PACKAGE_MULTIPASS_${_name}_CALLED)
+ message (STATUS "Clearing ${_name} dependent variables")
+ # Clear all the dependent variables so that the module can reset them
+ list (GET _args 0 _cmd)
+ if (_cmd STREQUAL "DEPENDENTS")
+ list (REMOVE_AT _args 0)
+ foreach (dep ${_args})
+ set (${_NAME}_${dep} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
+ endforeach (dep)
+ endif (_cmd STREQUAL "DEPENDENTS")
+ set (${_NAME}_FOUND "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
+ endif ()
+ set (PACKAGE_MULTIPASS_${name}_CALLED YES CACHE INTERNAL "Private" FORCE)
+endmacro (FIND_PACKAGE_MULTIPASS)
+
+
+macro (MULTIPASS_SOURCE_RUNS includes libraries source runs language)
+ include (Check${language}SourceRuns)
+ # This is a ridiculous hack. CHECK_${language}_SOURCE_* thinks that if the
+ # *name* of the return variable doesn't change, then the test does
+ # not need to be re-run. We keep an internal count which we
+ # increment to guarantee that every test name is unique. If we've
+ # gotten here, then the configuration has changed enough that the
+ # test *needs* to be rerun.
+ if (NOT MULTIPASS_TEST_COUNT)
+ set (MULTIPASS_TEST_COUNT 00)
+ endif (NOT MULTIPASS_TEST_COUNT)
+ math (EXPR _tmp "${MULTIPASS_TEST_COUNT} + 1") # Why can't I add to a cache variable?
+ set (MULTIPASS_TEST_COUNT ${_tmp} CACHE INTERNAL "Unique test ID")
+ set (testname MULTIPASS_TEST_${MULTIPASS_TEST_COUNT}_${runs})
+ set (CMAKE_REQUIRED_INCLUDES ${includes})
+ set (CMAKE_REQUIRED_LIBRARIES ${libraries})
+ if(${language} STREQUAL "C")
+ check_c_source_runs ("${source}" ${testname})
+ elseif(${language} STREQUAL "CXX")
+ check_cxx_source_runs ("${source}" ${testname})
+ endif()
+ set (${runs} "${${testname}}")
+endmacro (MULTIPASS_SOURCE_RUNS)
+
+macro (MULTIPASS_C_SOURCE_RUNS includes libraries source runs)
+ multipass_source_runs("${includes}" "${libraries}" "${source}" ${runs} "C")
+endmacro (MULTIPASS_C_SOURCE_RUNS)
--- /dev/null
+#[==[.md
+# paraview-config.cmake
+
+This file is used by CMake when finding ParaView.
+
+The following variables are provided by this module:
+
+ * `ParaView_VERSION`: The version of ParaView found.
+ * `ParaView_PREFIX_PATH`: Install prefix for ParaView.
+ * `PARAVIEW_USE_QT`: If ParaView's Qt GUI is available.
+ * `PARAVIEW_USE_MPI`: If ParaView is built with MPI support.
+ * `PARAVIEW_USE_PYTHON`: If ParaView is built with Python support.
+ * `PARAVIEW_PYTHONPATH`: Where ParaView's Python modules live under the
+ install prefix. Unset if Python is not available.
+ * `PARAVIEW_PLUGIN_SUBDIR`: The subdirectory under the library directory for
+ plugins.
+ * `ParaView_CLIENT_XML_FILES`: XML files for client applications to use to
+ reproduce ParaView's menu items. Only provided if `PARAVIEW_USE_QT`
+ is set.
+ * `ParaView_LIBRARIES`: The list of modules specified by `COMPONENTS` and
+ `OPTIONAL_COMPONENTS`. This may be used in `MODULES` arguments in the API
+ (e.g., `vtk_module_autoinit`). All modules are also targets and may be
+ linked to using `target_link_libraries`.
+#]==]
+
+set(${CMAKE_FIND_PACKAGE_NAME}_CMAKE_MODULE_PATH_save "${CMAKE_MODULE_PATH}")
+list(INSERT CMAKE_MODULE_PATH 0
+ "${CMAKE_CURRENT_LIST_DIR}")
+
+set("${CMAKE_FIND_PACKAGE_NAME}_CMAKE_PREFIX_PATH_save" "${CMAKE_PREFIX_PATH}")
+include("${CMAKE_CURRENT_LIST_DIR}/paraview-prefix.cmake")
+set("${CMAKE_FIND_PACKAGE_NAME}_PREFIX_PATH"
+ "${_vtk_module_import_prefix}")
+unset(_vtk_module_import_prefix)
+list(INSERT CMAKE_PREFIX_PATH 0
+ "${${CMAKE_FIND_PACKAGE_NAME}_PREFIX_PATH}")
+
+set("${CMAKE_FIND_PACKAGE_NAME}_VERSION" "@PARAVIEW_VERSION_FULL@")
+
+unset("${CMAKE_FIND_PACKAGE_NAME}_FOUND")
+
+set(_paraview_use_external_vtk "@PARAVIEW_USE_EXTERNAL_VTK@")
+set(_paraview_find_package_args)
+if (NOT _paraview_use_external_vtk)
+ list(APPEND _paraview_find_package_args
+ PATHS "${CMAKE_CURRENT_LIST_DIR}/vtk"
+ NO_DEFAULT_PATH)
+endif ()
+if (${CMAKE_FIND_PACKAGE_NAME}_FIND_QUIETLY)
+ list(APPEND _paraview_find_package_args
+ QUIET)
+endif ()
+find_package(VTK REQUIRED
+ ${_paraview_find_package_args})
+if (NOT VTK_FOUND)
+ set("${CMAKE_FIND_PACKAGE_NAME}_FOUND" 0)
+endif ()
+unset(_paraview_find_package_args)
+unset(_paraview_use_external_vtk)
+
+set(PARAVIEW_USE_QT "@PARAVIEW_USE_QT@")
+set(PARAVIEW_USE_MPI "@PARAVIEW_USE_MPI@")
+set(PARAVIEW_USE_PYTHON "@PARAVIEW_USE_PYTHON@")
+set(PARAVIEW_PLUGIN_SUBDIR "paraview@paraview_version_suffix@/plugins")
+
+if (PARAVIEW_USE_PYTHON)
+ set(PARAVIEW_PYTHONPATH "@PARAVIEW_PYTHON_SITE_PACKAGES_SUFFIX@")
+ include("${CMAKE_CURRENT_LIST_DIR}/ParaViewPython-targets.cmake")
+ # Unset this for now; these targets will be defined later.
+ unset("${CMAKE_FIND_PACKAGE_NAME}_FOUND")
+ unset("${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE")
+endif ()
+
+include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}-targets.cmake")
+include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}-vtk-module-properties.cmake")
+
+include("${CMAKE_CURRENT_LIST_DIR}/paraview-find-package-helpers.cmake" OPTIONAL)
+include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}-vtk-module-find-packages.cmake")
+
+include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}Plugins-paraview_plugins-targets-depends.cmake")
+include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}Plugins-targets.cmake")
+include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}Plugins-paraview-plugin-properties.cmake")
+
+include("${CMAKE_CURRENT_LIST_DIR}/ParaViewTools-targets.cmake" OPTIONAL)
+
+include("${CMAKE_CURRENT_LIST_DIR}/ParaViewClient.cmake")
+include("${CMAKE_CURRENT_LIST_DIR}/ParaViewPlugin.cmake")
+include("${CMAKE_CURRENT_LIST_DIR}/ParaViewServerManager.cmake")
+include("${CMAKE_CURRENT_LIST_DIR}/ParaViewTesting.cmake")
+include("${CMAKE_CURRENT_LIST_DIR}/vtkModuleWrapClientServer.cmake")
+
+if (@PARAVIEW_USE_PYTHON@) # PARAVIEW_USE_PYTHON
+ include("${CMAKE_CURRENT_LIST_DIR}/paraview.modules-vtk-python-module-properties.cmake")
+endif ()
+
+if (@PARAVIEW_USE_QT@) # PARAVIEW_USE_QT
+ include("${CMAKE_CURRENT_LIST_DIR}/${CMAKE_FIND_PACKAGE_NAME}Client-targets.cmake")
+ include("${CMAKE_CURRENT_LIST_DIR}/ParaView-client-xml.cmake")
+endif ()
+
+set(_paraview_components_to_check)
+foreach (_paraview_component IN LISTS "${CMAKE_FIND_PACKAGE_NAME}_FIND_COMPONENTS")
+ if (DEFINED "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND")
+ # It was already not-found (likely due to `find-package` failures).
+ elseif (TARGET "${CMAKE_FIND_PACKAGE_NAME}::${_paraview_component}")
+ list(APPEND _paraview_components_to_check
+ "${_paraview_component}")
+ else ()
+ set("${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND" 0)
+ list(APPEND "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_NOT_FOUND_MESSAGE"
+ "The ${_paraview_component} component is not available.")
+ endif ()
+endforeach ()
+unset(_paraview_component)
+
+set(_paraview_vtk_components)
+
+while (_paraview_components_to_check)
+ list(GET _paraview_components_to_check 0 _paraview_component)
+ list(REMOVE_AT _paraview_components_to_check 0)
+ if (DEFINED "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND")
+ # We've already made a determiniation.
+ continue ()
+ endif ()
+
+ get_property(_paraview_dependencies
+ TARGET "${CMAKE_FIND_PACKAGE_NAME}::${_paraview_component}"
+ PROPERTY "INTERFACE_paraview_module_depends")
+ string(REPLACE "${CMAKE_FIND_PACKAGE_NAME}::" "" _paraview_dependencies "${_paraview_dependencies}")
+ set(_paraview_all_dependencies_checked TRUE)
+ foreach (_paraview_dependency IN LISTS _paraview_dependencies)
+ # Handle VTK module dependencies.
+ string(FIND "${_paraview_component}" "VTK::" _paraview_vtk_idx)
+ if (NOT _paraview_vtk_idx EQUAL -1)
+ unset(_paraview_vtk_idx)
+ if (NOT TARGET "${_paraview_dependency}")
+ set("${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND" 0)
+ list(APPEND "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_NOT_FOUND_MESSAGE"
+ "Failed to find the ${_paraview_dependency} module.")
+ endif ()
+ continue ()
+ endif ()
+ unset(_paraview_vtk_idx)
+
+ if (DEFINED "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_dependency}_FOUND")
+ if (NOT ${CMAKE_FIND_PACKAGE_NAME}_${_paraview_dependency}_FOUND)
+ set("${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND" 0)
+ list(APPEND "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_NOT_FOUND_MESSAGE"
+ "Failed to find the ${_paraview_dependency} component.")
+ endif ()
+ else ()
+ # Check its dependencies.
+ list(APPEND _paraview_components_to_check
+ "${_paraview_dependency}")
+ set(_paraview_all_found FALSE)
+ endif ()
+ endforeach ()
+ if (NOT DEFINED "${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND")
+ if (_paraview_all_dependencies_checked)
+ set("${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND" 1)
+ else ()
+ list(APPEND _paraview_components_to_check
+ "${_paraview_component}")
+ endif ()
+ endif ()
+ unset(_paraview_all_dependencies_checked)
+ unset(_paraview_dependency)
+ unset(_paraview_dependencies)
+endwhile ()
+unset(_paraview_component)
+unset(_paraview_components_to_check)
+
+set(_paraview_missing_components)
+foreach (_paraview_component IN LISTS "${CMAKE_FIND_PACKAGE_NAME}_FIND_COMPONENTS")
+ if (NOT ${CMAKE_FIND_PACKAGE_NAME}_${_paraview_component}_FOUND AND ${CMAKE_FIND_PACKAGE_NAME}_FIND_REQUIRED_${_paraview_component})
+ list(APPEND _paraview_missing_components
+ "${_paraview_component}")
+ endif ()
+endforeach ()
+
+if (_paraview_missing_components)
+ list(REMOVE_DUPLICATES _paraview_missing_components)
+ list(SORT _paraview_missing_components)
+ string(REPLACE ";" ", " _paraview_missing_components "${_paraview_missing_components}")
+ set("${CMAKE_FIND_PACKAGE_NAME}_FOUND" 0)
+ set("${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE"
+ "Could not find the ${CMAKE_FIND_PACKAGE_NAME} package with the following required components: ${_paraview_missing_components}.")
+endif ()
+unset(_paraview_missing_components)
+
+set("${CMAKE_FIND_PACKAGE_NAME}_LIBRARIES")
+if (NOT DEFINED "${CMAKE_FIND_PACKAGE_NAME}_FOUND")
+ # If nothing went wrong, we've successfully found the package.
+ set("${CMAKE_FIND_PACKAGE_NAME}_FOUND" 1)
+ # Build the `_LIBRARIES` variable.
+ foreach (_paraview_component IN LISTS "${CMAKE_FIND_PACKAGE_NAME}_FIND_COMPONENTS")
+ list(APPEND "${CMAKE_FIND_PACKAGE_NAME}_LIBRARIES"
+ "${CMAKE_FIND_PACKAGE_NAME}::${_paraview_component}")
+ endforeach ()
+ unset(_paraview_component)
+endif ()
+
+set(CMAKE_PREFIX_PATH "${${CMAKE_FIND_PACKAGE_NAME}_CMAKE_PREFIX_PATH_save}")
+unset("${CMAKE_FIND_PACKAGE_NAME}_CMAKE_PREFIX_PATH_save")
+
+set(CMAKE_MODULE_PATH "${${CMAKE_FIND_PACKAGE_NAME}_CMAKE_MODULE_PATH_save}")
+unset(${CMAKE_FIND_PACKAGE_NAME}_CMAKE_MODULE_PATH_save)
+
+# Compatibility with old code.
+if (NOT ${CMAKE_FIND_PACKAGE_NAME}_FIND_VERSION)
+ set(PARAVIEW_USE_FILE "${CMAKE_CURRENT_LIST_DIR}/paraview-use-file-deprecated.cmake")
+elseif (${CMAKE_FIND_PACKAGE_NAME}_FIND_VERSION VERSION_LESS 5.7)
+ set(PARAVIEW_USE_FILE "${CMAKE_CURRENT_LIST_DIR}/paraview-use-file-compat.cmake")
+else ()
+ set(PARAVIEW_USE_FILE "${CMAKE_CURRENT_LIST_DIR}/paraview-use-file-error.cmake")
+endif ()
+
+# 5.8 renamed these variables, so provide them if 5.8 is not the minimum
+# requested.
+if (NOT ${CMAKE_FIND_PACKAGE_NAME}_FIND_VERSION OR
+ ${CMAKE_FIND_PACKAGE_NAME}_FIND_VERSION VERSION_LESS "5.8")
+ set(PARAVIEW_BUILD_QT_GUI "${PARAVIEW_USE_QT}")
+ set(PARAVIEW_ENABLE_PYTHON "${PARAVIEW_USE_PYTHON}")
+endif ()
--- /dev/null
+# - Find a VTK installation or build tree.
+# The following variables are set if VTK is found. If VTK is not
+# found, VTK_FOUND is set to false.
+# VTK_FOUND - Set to true when VTK is found.
+# VTK_USE_FILE - CMake file to use VTK.
+# VTK_MAJOR_VERSION - The VTK major version number.
+# VTK_MINOR_VERSION - The VTK minor version number
+# (odd non-release).
+# VTK_BUILD_VERSION - The VTK patch level
+# (meaningless for odd minor).
+# VTK_INCLUDE_DIRS - Include directories for VTK
+# VTK_LIBRARY_DIRS - Link directories for VTK libraries
+# VTK_KITS - List of VTK kits, in CAPS
+# (COMMON,IO,) etc.
+# VTK_LANGUAGES - List of wrapped languages, in CAPS
+# (TCL, PYHTON,) etc.
+# The following cache entries must be set by the user to locate VTK:
+# VTK_DIR - The directory containing VTKConfig.cmake.
+# This is either the root of the build tree,
+# or the lib/vtk directory. This is the
+# only cache entry.
+# The following variables are set for backward compatibility and
+# should not be used in new code:
+# USE_VTK_FILE - The full path to the UseVTK.cmake file.
+# This is provided for backward
+# compatibility. Use VTK_USE_FILE
+# instead.
+#
+
+#=============================================================================
+# Copyright 2001-2009 Kitware, Inc.
+#
+# Distributed under the OSI-approved BSD License (the "License");
+# see accompanying file Copyright.txt for details.
+#
+# This software is distributed WITHOUT ANY WARRANTY; without even the
+# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the License for more information.
+#=============================================================================
+# (To distributed this file outside of CMake, substitute the full
+# License text for the above reference.)
+
+# Assume not found.
+SET(VTK_FOUND 0)
+
+# VTK 4.0 did not provide VTKConfig.cmake.
+IF("${VTK_FIND_VERSION}" VERSION_LESS 4.1)
+ SET(_VTK_40_ALLOW 1)
+ IF(VTK_FIND_VERSION)
+ SET(_VTK_40_ONLY 1)
+ ENDIF()
+ENDIF()
+
+# Construct consitent error messages for use below.
+SET(VTK_DIR_DESCRIPTION "directory containing VTKConfig.cmake. This is either the root of the build tree, or PREFIX/lib/vtk for an installation.")
+IF(_VTK_40_ALLOW)
+ SET(VTK_DIR_DESCRIPTION "${VTK_DIR_DESCRIPTION} For VTK 4.0, this is the location of UseVTK.cmake. This is either the root of the build tree or PREFIX/include/vtk for an installation.")
+ENDIF()
+SET(VTK_DIR_MESSAGE "VTK not found. Set the VTK_DIR cmake cache entry to the ${VTK_DIR_DESCRIPTION}")
+
+# Check whether VTK 4.0 has already been found.
+IF(_VTK_40_ALLOW AND VTK_DIR)
+ IF(EXISTS ${VTK_DIR}/UseVTK.cmake AND NOT EXISTS ${VTK_DIR}/VTKConfig.cmake)
+ SET(VTK_FOUND 1)
+ INCLUDE(UseVTKConfig40) # No VTKConfig; load VTK 4.0 settings.
+ ENDIF()
+ENDIF()
+
+# Use the Config mode of the find_package() command to find VTKConfig.
+# If this succeeds (possibly because VTK_DIR is already set), the
+# command will have already loaded VTKConfig.cmake and set VTK_FOUND.
+IF(NOT _VTK_40_ONLY AND NOT VTK_FOUND)
+ FIND_PACKAGE(VTK QUIET NO_MODULE)
+ENDIF()
+
+# Special search for VTK 4.0.
+IF(_VTK_40_ALLOW AND NOT VTK_DIR)
+ # Old scripts may set these directories in the CMakeCache.txt file.
+ # They can tell us where to find VTKConfig.cmake.
+ SET(VTK_DIR_SEARCH_LEGACY "")
+ IF(VTK_BINARY_PATH AND USE_BUILT_VTK)
+ SET(VTK_DIR_SEARCH_LEGACY ${VTK_DIR_SEARCH_LEGACY} ${VTK_BINARY_PATH})
+ ENDIF(VTK_BINARY_PATH AND USE_BUILT_VTK)
+ IF(VTK_INSTALL_PATH AND USE_INSTALLED_VTK)
+ SET(VTK_DIR_SEARCH_LEGACY ${VTK_DIR_SEARCH_LEGACY}
+ ${VTK_INSTALL_PATH}/lib/vtk)
+ ENDIF(VTK_INSTALL_PATH AND USE_INSTALLED_VTK)
+
+ # Look for UseVTK.cmake in build trees or under <prefix>/include/vtk.
+ FIND_PATH(VTK_DIR
+ NAMES UseVTK.cmake
+ PATH_SUFFIXES vtk-4.0 vtk
+ HINTS $ENV{VTK_DIR}
+
+ PATHS
+
+ # Support legacy cache files.
+ ${VTK_DIR_SEARCH_LEGACY}
+
+ # Read from the CMakeSetup registry entries. It is likely that
+ # VTK will have been recently built.
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild1]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild2]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild3]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild4]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild5]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild6]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild7]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild8]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild9]
+ [HKEY_CURRENT_USER\\Software\\Kitware\\CMakeSetup\\Settings\\StartPath;WhereBuild10]
+
+ # Help the user find it if we cannot.
+ DOC "The ${VTK_DIR_DESCRIPTION}"
+ )
+
+ IF(VTK_DIR)
+ IF(EXISTS ${VTK_DIR}/UseVTK.cmake AND NOT EXISTS ${VTK_DIR}/VTKConfig.cmake)
+ SET(VTK_FOUND 1)
+ INCLUDE(UseVTKConfig40) # No VTKConfig; load VTK 4.0 settings.
+ ELSE()
+ # We found the wrong version. Pretend we did not find it.
+ SET(VTK_DIR "VTK_DIR-NOTFOUND" CACHE PATH "The ${VTK_DIR_DESCRIPTION}" FORCE)
+ ENDIF()
+ ENDIF()
+ENDIF()
+
+#-----------------------------------------------------------------------------
+IF(VTK_FOUND)
+ # Set USE_VTK_FILE for backward-compatability.
+ SET(USE_VTK_FILE ${VTK_USE_FILE})
+ELSE(VTK_FOUND)
+ # VTK not found, explain to the user how to specify its location.
+ IF(VTK_FIND_REQUIRED)
+ MESSAGE(FATAL_ERROR ${VTK_DIR_MESSAGE})
+ ELSE(VTK_FIND_REQUIRED)
+ IF(NOT VTK_FIND_QUIETLY)
+ MESSAGE(STATUS ${VTK_DIR_MESSAGE})
+ ENDIF(NOT VTK_FIND_QUIETLY)
+ ENDIF(VTK_FIND_REQUIRED)
+ENDIF(VTK_FOUND)
+
--- /dev/null
+# Copyright (C) 2007-2019 CEA/DEN, EDF R&D, OPEN CASCADE
+#
+# This library is free software; you can redistribute it and/or
+# modify it under the terms of the GNU Lesser General Public
+# License as published by the Free Software Foundation; either
+# version 2.1 of the License, or (at your option) any later version.
+#
+# This library is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this library; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+#
+# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
+#
+
+MESSAGE(STATUS "Check for XDR ...")
+
+INCLUDE(FindPackageHandleStandardArgs)
+
+FIND_PATH(XDR_INCLUDE_DIRS rpc/xdr.h PATH_SUFFIXES tirpc)
+IF(XDR_INCLUDE_DIRS)
+ SET(XDR_DEFINITIONS "-DHAS_XDR")
+ENDIF(XDR_INCLUDE_DIRS)
+
+IF(WIN32)
+ FIND_LIBRARY(XDR_LIBRARIES xdr) # To get the .lib file from XDR
+ FIND_PATH(XDR_INCLUDE_DIRS2 stdint.h PATH_SUFFIXES src/msvc) # To get the stdint.h from XDR (needed by types.h)
+ IF(XDR_INCLUDE_DIRS)
+ IF(XDR_INCLUDE_DIRS2)
+ LIST(APPEND XDR_INCLUDE_DIRS "${XDR_INCLUDE_DIRS2}")
+ ELSE()
+ SET(XDR_INCLUDE_DIRS "${XDR_INCLUDE_DIRS2}") # Make the detection fail
+ ENDIF()
+ ENDIF()
+ FIND_PACKAGE_HANDLE_STANDARD_ARGS(XDR REQUIRED_VARS XDR_INCLUDE_DIRS XDR_LIBRARIES)
+ELSE(WIN32)
+ FIND_LIBRARY(XDR_LIBRARY NAMES tirpc xdr)
+ IF(NOT XDR_LIBRARY)
+ MESSAGE(STATUS "Could not find XDR libraries ...")
+ ELSE()
+ MESSAGE(STATUS "Found XDR libraries ${XDR_LIBRARY} ...")
+ SET(XDR_LIBRARIES ${XDR_LIBRARY})
+ ENDIF()
+ FIND_PACKAGE_HANDLE_STANDARD_ARGS(XDR REQUIRED_VARS XDR_INCLUDE_DIRS)
+ENDIF(WIN32)
--- /dev/null
+##Copyright (C) jedbrown, johnfettig.
+##All rights reserved.
+##
+##Redistribution and use in source and binary forms, with or without modification,
+##are permitted provided that the following conditions are met:
+##
+##* Redistributions of source code must retain the above copyright notice, this
+## list of conditions and the following disclaimer.
+##
+##* Redistributions in binary form must reproduce the above copyright notice, this
+## list of conditions and the following disclaimer in the documentation and/or
+## other materials provided with the distribution.
+##
+##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+##ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+##WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
+##ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+##(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+##LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+##ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+##(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+##SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+# ResolveCompilerPaths - this module defines two macros
+#
+# RESOLVE_LIBRARIES (XXX_LIBRARIES LINK_LINE)
+# This macro is intended to be used by FindXXX.cmake modules.
+# It parses a compiler link line and resolves all libraries
+# (-lfoo) using the library path contexts (-L/path) in scope.
+# The result in XXX_LIBRARIES is the list of fully resolved libs.
+# Example:
+#
+# RESOLVE_LIBRARIES (FOO_LIBRARIES "-L/A -la -L/B -lb -lc -ld")
+#
+# will be resolved to
+#
+# FOO_LIBRARIES:STRING="/A/liba.so;/B/libb.so;/A/libc.so;/usr/lib/libd.so"
+#
+# if the filesystem looks like
+#
+# /A: liba.so libc.so
+# /B: liba.so libb.so
+# /usr/lib: liba.so libb.so libc.so libd.so
+#
+# and /usr/lib is a system directory.
+#
+# Note: If RESOLVE_LIBRARIES() resolves a link line differently from
+# the native linker, there is a bug in this macro (please report it).
+#
+# RESOLVE_INCLUDES (XXX_INCLUDES INCLUDE_LINE)
+# This macro is intended to be used by FindXXX.cmake modules.
+# It parses a compile line and resolves all includes
+# (-I/path/to/include) to a list of directories. Other flags are ignored.
+# Example:
+#
+# RESOLVE_INCLUDES (FOO_INCLUDES "-I/A -DBAR='\"irrelevant -I/string here\"' -I/B")
+#
+# will be resolved to
+#
+# FOO_INCLUDES:STRING="/A;/B"
+#
+# assuming both directories exist.
+# Note: as currently implemented, the -I/string will be picked up mistakenly (cry, cry)
+include (CorrectWindowsPaths)
+
+macro (RESOLVE_LIBRARIES LIBS LINK_LINE)
+ string (REGEX MATCHALL "((-L|-l|-Wl)([^\" ]+|\"[^\"]+\")|[^\" ]+\\.(a|so|dll|lib))" _all_tokens "${LINK_LINE}")
+ set (_libs_found)
+ set (_directory_list)
+ foreach (token ${_all_tokens})
+ if (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
+ # If it's a library path, add it to the list
+ string (REGEX REPLACE "^-L" "" token ${token})
+ string (REGEX REPLACE "//" "/" token ${token})
+ convert_cygwin_path(token)
+ list (APPEND _directory_list ${token})
+ elseif (token MATCHES "^(-l([^\" ]+|\"[^\"]+\")|[^\" ]+\\.(a|so|dll|lib))")
+ # It's a library, resolve the path by looking in the list and then (by default) in system directories
+ if (WIN32) #windows expects "libfoo", linux expects "foo"
+ string (REGEX REPLACE "^-l" "lib" token ${token})
+ else (WIN32)
+ string (REGEX REPLACE "^-l" "" token ${token})
+ endif (WIN32)
+ set (_root)
+ if (token MATCHES "^/") # We have an absolute path
+ #separate into a path and a library name:
+ string (REGEX MATCH "[^/]*\\.(a|so|dll|lib)$" libname ${token})
+ string (REGEX MATCH ".*[^${libname}$]" libpath ${token})
+ convert_cygwin_path(libpath)
+ set (_directory_list ${_directory_list} ${libpath})
+ set (token ${libname})
+ endif (token MATCHES "^/")
+ set (_lib "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
+ find_library (_lib ${token} HINTS ${_directory_list} ${_root})
+ if (_lib)
+ string (REPLACE "//" "/" _lib ${_lib})
+ list (APPEND _libs_found ${_lib})
+ else (_lib)
+ message (STATUS "Unable to find library ${token}")
+ endif (_lib)
+ endif (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
+ endforeach (token)
+ set (_lib "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
+ # only the LAST occurence of each library is required since there should be no circular dependencies
+ if (_libs_found)
+ list (REVERSE _libs_found)
+ list (REMOVE_DUPLICATES _libs_found)
+ list (REVERSE _libs_found)
+ endif (_libs_found)
+ set (${LIBS} "${_libs_found}")
+endmacro (RESOLVE_LIBRARIES)
+
+macro (RESOLVE_INCLUDES INCS COMPILE_LINE)
+ string (REGEX MATCHALL "-I([^\" ]+|\"[^\"]+\")" _all_tokens "${COMPILE_LINE}")
+ set (_incs_found)
+ foreach (token ${_all_tokens})
+ string (REGEX REPLACE "^-I" "" token ${token})
+ string (REGEX REPLACE "//" "/" token ${token})
+ convert_cygwin_path(token)
+ if (EXISTS ${token})
+ list (APPEND _incs_found ${token})
+ else (EXISTS ${token})
+ message (STATUS "Include directory ${token} does not exist")
+ endif (EXISTS ${token})
+ endforeach (token)
+ list (REMOVE_DUPLICATES _incs_found)
+ set (${INCS} "${_incs_found}")
+endmacro (RESOLVE_INCLUDES)
--- /dev/null
+#!/bin/bash
+
+export CDMATH_INSTALL=@CMAKE_INSTALL_PREFIX@/cdmath
+export COREFLOWS_INSTALL=@CMAKE_INSTALL_PREFIX@/coreflows
+export PETSC_DIR=@PETSC_INSTALL@
+export PETSC_ARCH=@PETSC_ARCH@
+export PETSC_INCLUDES=@PETSC_INCLUDES_INSTALL@
+export PETSC_LIBRARIES=@PETSC_DIR@/@PETSC_ARCH@/lib
+export MEDFILE_ROOT_DIR=@MEDFILE_ROOT_DIR@
+export MEDFILE_INCLUDE_DIRS=@MEDFILE_INCLUDE_DIRS@
+export MEDFILE_LIBRARIES=@MEDFILE_LIBRARIES_INSTALL@
+export MEDCOUPLING_ROOT_DIR=@MEDCOUPLING_ROOT_DIR@
+export MEDCOUPLING_INCLUDE_DIR=@MEDCOUPLING_INCLUDE_DIR@
+export MEDCOUPLING_LIBRARIES=@MEDCOUPLING_LIBRARIES@
+export PV_LIB_DIR=@PV_LIB_DIR@
+export PV_PYTHON_DIR=@PV_PYTHON_DIR@
+
+#CDMATH paths
+export LD_LIBRARY_PATH=$CDMATH_INSTALL/lib:$MEDCOUPLING_LIBRARIES:$MEDFILE_LIBRARIES:$PETSC_LIBRARIES:${PETSC_DIR}/${PETSC_ARCH}/lib:$PV_LIB_DIR:${LD_LIBRARY_PATH}
+export PYTHONPATH=$CDMATH_INSTALL/lib/cdmath:$CDMATH_INSTALL/bin/cdmath:$CDMATH_INSTALL/bin/cdmath/postprocessing:$CDMATH_INSTALL/$PV_PYTHON_DIR:$MEDCOUPLING_LIBRARIES:$MEDFILE_LIBRARIES:$PETSC_LIBRARIES:${PETSC_DIR}/${PETSC_ARCH}/lib:${PYTHONPATH}
+
+#CoreFlows paths
+export CoreFlows=$CoreFlows_INSTALL/bin/Executable/CoreFlowsMainExe
+export LD_LIBRARY_PATH=$CoreFlows_INSTALL/lib:$CDMATH_DIR/lib:${PETSC_DIR}/${PETSC_ARCH}/lib:${MEDCOUPLING_LIBRARIES}:${MEDFILE_C_LIBRARIES}:${LD_LIBRARY_PATH}
+export PYTHONPATH=$CoreFlows_INSTALL/lib:$CoreFlows_INSTALL/lib/CoreFlows_Python:$CoreFlows_INSTALL/bin/CoreFlows_Python:$CoreFlows_INSTALL/lib/python2.7/site-packages/salome:$CDMATH_DIR/lib/cdmath:$CDMATH_DIR/bin/cdmath:$CDMATH_DIR/bin/cdmath/postprocessing:${PETSC_DIR}/${PETSC_ARCH}/lib:${MEDCOUPLING_LIBRARIES}:${MEDFILE_C_LIBRARIES}:${PYTHONPATH}
+export CoreFlowsGUI=$CoreFlows_INSTALL/bin/salome/CoreFlows_Standalone.py
