+++ /dev/null
-#!/bin/bash
-
-echo "##########################################################################"
-echo "openturns" $VERSION
-echo "##########################################################################"
-
-# we don't install in python directory -> modify environment as described in INSTALL file
-
-#mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION}/site-packages
-export PATH=$(pwd)/bin:$PATH
-export PYTHONPATH=$(pwd):$PYTHONPATH
-export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH
-
-CMAKE_OPTIONS=""
-if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
- echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
- CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
- CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
-fi
-
-CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
-CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
-CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
-CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
-
-if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
-fi
-
-if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
- CMAKE_OPTIONS+=" -Dtbb_DIR=${TBB_ROOT_DIR}/lib/cmake"
-fi
-
-# https://github.com/persalys/persalys/issues/745
-LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
-case $LINUX_DISTRIBUTION in
- UB22*|CO8*|CO9*|FD36|FD37)
- echo "WARNING: switching OFF TBB support"
- CMAKE_OPTIONS+=" -DUSE_TBB=OFF"
- ;;
- *)
- ;;
-esac
-
-# Blas/Lapack
-if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
- CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
- CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
- CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
-fi
-
-### libxml2 settings
-if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
- CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
- CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
-fi
-
-# HDF5
-if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
- CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
- CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
- CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
- CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
- CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
- CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
-fi
-
-# CMINPACK
-if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
- CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
- CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
-else
- CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
- CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
-fi
-
-# Blas/Lapack
-if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
- CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
- CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
- CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
-fi
-
-if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
- CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
- CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
-fi
-
-### libxml2 settings
-if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
- CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
- CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
-fi
-
-## nlopt
-if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then
- CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
- CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
- CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
-fi
-
-echo
-echo "*** cmake" $CMAKE_OPTIONS
-
-rm -rf $BUILD_DIR
-mkdir -p $BUILD_DIR/openturns
-mkdir -p $BUILD_DIR/cache/pip
-
-# since we are using several nodes and share the same $HOME
-# compilation can get screwed up.
-# following this discussion: https://tex.stackexchange.com/questions/467824/is-it-possible-to-relocate-my-texmf-directory
-# we define the following environment variables
-export TEXMFHOME=$BUILD_DIR/texmf
-export TEXMFVAR=$BUILD_DIR/texlive
-export TEXMFCONFIG=$BUILD_DIR/texlive
-mkdir -p $TEXMFHOME
-mkdir -p $TEXMFVAR
-mkdir -p $TEXMFCONFIG
-
-cd $BUILD_DIR/openturns
-cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.19
-if [ $? -ne 0 ]
-then
- echo "ERROR on cmake"
- exit 1
-fi
-
-echo
-echo "*** make" $MAKE_OPTIONS
-make $MAKE_OPTIONS
-if [ $? -ne 0 ]
-then
- echo "ERROR on make"
- exit 2
-fi
-
-echo
-echo "*** make install"
-make install
-if [ $? -ne 0 ]
-then
- echo "ERROR on make install"
- exit 3
-fi
-
-echo
-echo "*** check installation"
-if [! -d "${PRODUCT_INSTALL}/lib" ]; then
- mkdir -p ${PRODUCT_INSTALL}/lib
-fi
-
-if [ -d "${PRODUCT_INSTALL}/lib64" ]; then
- echo "WARNING: moving lib64 to lib"
- mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib/
- rmdir ${PRODUCT_INSTALL}/lib64
-elif [ -d "${PRODUCT_INSTALL}/local/lib64" ]; then
- echo "WARNING: moving local/lib64 to lib"
- mv ${PRODUCT_INSTALL}/local/lib64/* ${PRODUCT_INSTALL}/lib/
- rmdir ${PRODUCT_INSTALL}/local/lib64
-fi
-
-if [[ -d "${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages" ]]; then
- echo "WARNING: renaming ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages as ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages"
- cd ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}
- ls -l
- mv dist-packages site-packages
- ls -l
- cd $BUILD_DIR/openturns
-fi
-
-export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
-export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
-chmod +x ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
-${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
-if [ $? -ne 0 ]
-then
- echo "ERROR testing Openturns features...."
- exit 4
-fi
-
-LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
-if [[ -d "$SOURCE_DIR/otfftw-0.12" ]]; then
- declare -A OTC
- OTC["otagrum"]="0.6"
- OTC["otfftw"]="0.12"
- OTC["otmixmod"]="0.13"
- OTC["otmorris"]="0.13"
- OTC["otpmml"]="1.12"
- OTC["otrobopt"]="0.11"
- OTC["otsubsetinverse"]="1.9"
- OTC["otsvm"]="0.11"
-
- for k in ${!OTC[@]};
- do
- echo
- echo "*** C O M P O N E N T : $k-${OTC[$k]} "
- if [[ $k == "otagrum" ]]; then
- echo "WARNING: skipping $k.."
- continue
- fi
- cd $BUILD_DIR
- mkdir ${BUILD_DIR}/$k
- cd ${BUILD_DIR}/$k
- CMAKE_EXTRA_OPTIONS=
- if [[ $DIST_NAME == "CO" ]]; then
- CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" # needs extra latex modules on CentOS 7, 8
- CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
- fi
- if [[ $k == "otmixmod" ]]; then
- CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
- CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
- elif [[ $k == "otsubsetinverse" ]]; then
- CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
- CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
- CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
- elif [[ $k == "otfftw" ]]; then
- CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
- elif [[ $k == "otmorris" ]]; then
- case $LINUX_DISTRIBUTION in
- DB*|FD*|UB*)
- echo "WARNING: switching OFF documentation build"
- CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
- CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
- ;;
- esac
- elif [[ $k == "otrobopt" ]]; then
- case $LINUX_DISTRIBUTION in
- DB*|FD*|UB*)
- echo "WARNING: switching OFF documentation build"
- CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
- CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
- ;;
- esac
- elif [[ $k == "otsvm" ]]; then
- case $LINUX_DISTRIBUTION in
- DB*|FD*|UB*)
- echo "WARNING: switching OFF documentation build"
- CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
- CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
- ;;
- esac
- elif [[ $k == "otpmml" ]]; then
- CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
- fi
-
- echo
- echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
- cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
- if [ $? -ne 0 ]
- then
- echo "ERROR on cmake"
- exit 1
- fi
-
- echo
- echo "*** make" $MAKE_OPTIONS
- make $MAKE_OPTIONS
- if [ $? -ne 0 ]
- then
- echo "ERROR on make"
- exit 2
- fi
-
- echo
- echo "*** make install"
- make install
- if [ $? -ne 0 ]
- then
- echo "ERROR on make install"
- exit 3
- fi
- done
-
- declare -A OTP
- OTP["otfmi"]="0.15"
- OTP["otpod"]="0.6.8"
- OTP["otwrapy"]="0.11"
- for k in ${!OTP[@]};
- do
- echo
- echo "*** C O M P O N E N T : $k-${OTP[$k]} "
-
- if [ "$SAT_Python_IS_NATIVE" == "1" ]; then
- if [ $k == "otfmi" ]; then
- echo "INFO: install dill-0.3.4"
- ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install dill-0.3.4"
- exit 6
- fi
- elif [ $k == "otpod" ]; then
- if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then
- echo "*** skipping: since system Cython too old"
- continue
- fi
- echo "INFO: install scikit-learn-0.24.2"
- ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps --prefix=$PRODUCT_INSTALL
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install scikit-0.24.2"
- exit 6
- fi
- echo "INFO: install threadpoolctl-3.0.0"
- ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install threadpoolctl 3.0.0"
- exit 6
- fi
- fi
- else # non native Python
- if [[ $k == "otfmi" ]]; then
- echo "INFO: install dill-0.3.4"
- ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install dikk-0.3.4"
- exit 5
- fi
- elif [[ $k == "otpod" ]]; then
- echo "INFO: install threadpoolctl-3.0.0"
- ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install readpoolctl 3.0.0"
- exit 6
- fi
- echo "INFO: install joblib-1.1.0"
- ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install joblib-1.1.0"
- exit 6
- fi
- echo "INFO: install decorator-5.1.0"
- ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install decorator-5.1.0"
- exit 6
- fi
- echo "INFO: install scikit-learn-0.24.2"
- ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install scikit-0.24.2"
- exit 6
- fi
- fi
- fi
-
- cd $BUILD_DIR
- mkdir ${BUILD_DIR}/$k
- cd ${BUILD_DIR}/$k
- cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
- #
- $PYTHONBIN setup.py build
- if [ $? -ne 0 ]
- then
- echo "ERROR on ${PYTHONBIN} setup.py build"
- exit 4
- fi
- #
- $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
- if [ $? -ne 0 ]
- then
- echo "ERROR on ${PYTHONBIN} setup.py install --prefix=$PRODUCT_INSTALL"
- exit 5
- fi
- done
-
- #
- # O P E N T U R N S
- #
- if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then
- echo "INFO: site.py already installed"
- elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then
- # check first whether the init.py file is installed
- echo "WARNING: missing init.py file. Installing it from system Python installation"
- SITE_PATCH=
- LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
- case $LINUX_DISTRIBUTION in
- DB11)
- SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
- ;;
- DB10)
- SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
- ;;
- UB22*)
- SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
- ;;
- UB20*)
- SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
- ;;
- FD32)
- SITE_PATCH=/usr/lib/python3.8/site-packages/setuptools/site-patch.py
- ;;
- FD34)
- SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
- ;;
- FD36)
- SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
- ;;
- FD37)
- SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
- ;;
- CO8*)
- SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
- ;;
- *)
- SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
- ;;
- esac
- # check whether this file exists
- if [ "${SITE_PATCH}" == "" ]; then
- cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
- else
- cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
- fi
- elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then
- cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
- else
- echo "ERROR: could not find site-patch.py"
- exit 7
- fi
-fi
-
-cd ${PRODUCT_INSTALL}/lib
-# On some nodes, the link to OT is not done properly.
-# In addition to this issue, it seems that there is a bug in openturns 1.19 which uses 20 instead of 19 as suffix.
-if [[ ! -f libOT.so.0 ]]; then
- echo "INFO: Fixing libOT.so"
- ln -sf libOT.so.0.20.0 libOT.so.0.20
- ln -sf libOT.so.0.20 libOT.so.0
- ln -sf libOT.so.0 libOT.so
-fi
-
-echo
-echo "########## END"
