fix import vtk issue

diff --git a/products/compil_scripts/ParaView-5.9.0.sh b/products/compil_scripts/ParaView-5.9.0.sh
index 3b2e7de825d1678db5c5a49e47dff3f43e7f1b4c..f91b68ef4416030c73ab79dbcfaf6cffb89ba763 100755 (executable)
--- a/products/compil_scripts/ParaView-5.9.0.sh
+++ b/products/compil_scripts/ParaView-5.9.0.sh
@@ -122,8 +122,16 @@ if [ -n "$SAT_HPC" ]
 then
     CMAKE_OPTIONS+=" -DPARAVIEW_USE_MPI:BOOL=ON"
     if [ -n "$MPI_ROOT_DIR" ]; then
-        CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
-        CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
+       # On CentOS, Fedora, hdf5-openmpi-devel system package installs HDF5 headers in the openmpi include directory
+       # This screws up ParaView at runtime since xdmf2 is built with the wrong HDF5 files
+       # Attempts to fix at Xdmf2 CMakeLists file did not help to resolve this issue
+       #  tried include_directories(BEFORE "${HDF_INCLUDE_DIRS}")
+       if [ "${SAT_openmpi_IS_NATIVE}" == "1" ] &&  [ -f "${MPI_INCLUDE_DIR}/hdf5.h" ] &&  [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
+            echo "WARNING: openMPI is system based and hdf5-openmpi-devel is installed on your node (${MPI_INCLUDE_DIR}/hdf5.h detected...)"
+       else
+            CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
+            CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
+       fi
     fi
     CMAKE_OPTIONS+=" -DVTK_SMP_IMPLEMENTATION_TYPE=OpenMP -DVTKm_ENABLE_OPENMP=ON"
     CMAKE_OPTIONS+=" -DVTK_MODULE_ENABLE_VTK_FiltersParallelMPI=YES"