string logFile = generateTemporaryFileName("CCC-submitlog");
// define command to submit batch
- string subCommand = string("cd ") + workDir + "; ccc_msub " + fileNameToExecute + "_Batch.sh";
+ string subCommand = string("bash -l -c 'cd ") + workDir + "; ccc_msub " + fileNameToExecute + "_Batch.sh";
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
command += " > ";
command += logFile;
- command += " 2>&1";
+ command += " 2>&1'";
cerr << command.c_str() << endl;
status = system(command.c_str());
if(status)
iss >> ref;
// define command to delete batch
- string subCommand = string("ccc_mdel ") + iss.str();
+ string subCommand = string("bash -l -c 'ccc_mdel ") + iss.str() + string("'");
string command = _protocol.getExecCommand(subCommand, _hostname, _username);
cerr << command.c_str() << endl;
status = system(command.c_str());