openmpi environment file should be consistent now. 2/ CentOS 7 uses MPI as well,...

diff --git a/applications/SALOME-master-native.pyconf b/applications/SALOME-master-native.pyconf
index 767612083438807efeed05fcf7aaf71a59774f4e..896e31ba0e382206681e4bdf34a74f5a942a83b2 100644 (file)
--- a/applications/SALOME-master-native.pyconf
+++ b/applications/SALOME-master-native.pyconf
@@ -201,7 +201,6 @@ __overwrite__ :
         'APPLICATION.products.opencv' : '3.2.0'
         'APPLICATION.products.cminpack': 'native'
         'APPLICATION.products.PyFMI'    : {tag: '2.5',   base: 'no', section: 'version_2_5_no_pip'                }
-        'APPLICATION.products.ParaView' : {tag: '5.9.0', base: 'no', section: 'version_5_9_0_UB20_0_4', hpc: 'yes'}
     }
     {
         # On DB10, ParaView fails to find xmlpatterns executable : ParaViewClient.cmake try to find it
@@ -212,14 +211,12 @@ __overwrite__ :
         __condition__ : "VARS.dist in ['DB10']"
         'APPLICATION.products.cminpack': 'native'
         'APPLICATION.products.PyFMI'    : {tag:'2.5',    base: 'no',  section: 'version_2_5_no_pip'            }
-        'APPLICATION.products.ParaView' : {tag: '5.9.0', base : 'no', section: 'version_5_9_0_DB10', hpc: 'yes'}
     }
     {
         __condition__ : "VARS.dist in ['DB11']"
         'APPLICATION.products.opencv' : '3.2.0'
         'APPLICATION.products.cminpack': 'native'
         'APPLICATION.products.PyFMI'    : {tag:'2.5',    base: 'no',  section: 'version_2_5_no_pip'            }
-        'APPLICATION.products.ParaView' : {tag: '5.9.0', base : 'no', section: 'version_5_9_0_DB11', hpc: 'yes'}
     }
     {
         # CentOS 8 repositories don't include sphinxintl package which must be installed through pip.
@@ -229,14 +226,12 @@ __overwrite__ :
         'APPLICATION.products.cminpack'    : '1.3.6'
         'APPLICATION.products.PyFMI'       : {tag: '2.5',   base: 'no', section: 'version_2_5_no_pip'             }
         'APPLICATION.products.statsmodels' : {tag: '0.6.1', base: 'no', section: 'version_0_6_1_no_pip'           }
-        'APPLICATION.products.ParaView'    : {tag: '5.9.0', base: 'no', section: 'version_5_9_0_CO8',   hpc: 'yes'}
     }
     {
         __condition__ : "VARS.dist in ['FD32']"
         'APPLICATION.products.opencv'    : '3.2.0'
         'APPLICATION.products.PyFMI'     : {tag: '2.5',   base: 'no', section: 'version_2_5_no_pip'              }
         'APPLICATION.products.openturns' : {tag: '1.17',  base: 'no', section: 'version_1_17_FD32'               }
-        'APPLICATION.products.ParaView'  : {tag: '5.9.0', base: 'no', section: 'version_5_9_0_FD32',   hpc: 'yes'}
 
     }
     {

diff --git a/applications/SALOME-master.pyconf b/applications/SALOME-master.pyconf
index 48372babcf167de0d8f121f946a997ceed726cc7..0b0d1aba22f4ca98d94528538e8efc914e636b1e 100644 (file)
--- a/applications/SALOME-master.pyconf
+++ b/applications/SALOME-master.pyconf
@@ -211,7 +211,8 @@ __overwrite__ :
     }
     {
         __condition__ : "VARS.dist in ['CO7']"
-        'APPLICATION.rm_products' : ['openmpi', 'mpi4py', 'gcc', 'gmp', 'mpc', 'mpfr']
+        'APPLICATION.rm_products' : ['gcc', 'gmp', 'mpc', 'mpfr']
+        'APPLICATION.products.ParaView'    : {tag:'5.9.0',  base: 'no',  section: 'version_5_9_0_MPI', hpc: 'yes'}
     }
     {
         __condition__ : "VARS.dist in ['CO8']"

diff --git a/products/ParaView.pyconf b/products/ParaView.pyconf
index a680f988c50c9b5e6c2b291e1d49b1f51f8f479c..5dd8b930088757d2153dabd666c1e7388fb37971 100755 (executable)
--- a/products/ParaView.pyconf
+++ b/products/ParaView.pyconf
@@ -239,7 +239,8 @@ version_5_9_0_MPI :
                'paraview-5.9.0-gcc.11.0.patch',
                'paraview.0017-VTK-openMPI-if-devtoolset.patch',
                'paraview.0018-spns-26351-autoconvert.patch',
-               'paraview.0019-spns-26344-VTK-OpenMP.patch'
+               'paraview.0019-spns-26344-VTK-OpenMP.patch',
+               'paraview.0020.findMPI.patch'
               ]
 }
 
@@ -265,11 +266,17 @@ version_5_9_0_UB20_0_4 :
     archive_info : {archive_name : "ParaView-5.9.0-lata.tar.gz"}
     # two other LATA patches already included in archive
     patches : ['paraview.0003-ParaViewClient.patch',
+               'paraview.0004-ParaView_hdf5.patch',
                'paraview.0005-ParaView_find_cgns.patch',
+               'paraview.0006-ParaView_find_libxml2.patch',
+               'paraview.0007-ParaView_find_freetype.patch',
+               'paraview-5.9-VTKM_MPI.patch',
                'paraview.0010-ParaView_CATALYST_cmake.patch',
                'paraview.0008-ParaView_coincident_rendering.patch',
                'paraview.0011-ParaView_protobuf_crash.patch',
-               'paraview.0015-Paraview_VTKM_ioss.patch'
+               'paraview.0015-Paraview_VTKM_ioss.patch',
+               'paraview-5.9.0-gcc.11.0.patch',
+               'paraview.0017-VTK-openMPI-if-devtoolset.patch',
                'paraview.0018-spns-26351-autoconvert.patch',
                'paraview.0019-spns-26344-VTK-OpenMP.patch',
                'paraview.0020.findMPI.patch'

diff --git a/products/compil_scripts/topo2volmesh.sh b/products/compil_scripts/topo2volmesh.sh
index c8843faf1a76018612d912931f96e98314112834..3e3d51436357d41c504f4b9af010e2e85520b9d7 100755 (executable)
--- a/products/compil_scripts/topo2volmesh.sh
+++ b/products/compil_scripts/topo2volmesh.sh
@@ -4,32 +4,12 @@ echo "##########################################################################
 echo "topo2volmesh" $VERSION
 echo "##########################################################################"
 
+export CC=$(which mpicc)
+export CXX=$(which mpicxx)
+export MPICXX=$(which mpic++)
+
 CONFIGURE_FLAGS=
-if [ -n "$MPI_ROOT_DIR" ]
-then
-    echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
-    export CC=${MPI_ROOT_DIR}/bin/mpicc
-    export CXX=${MPI_ROOT_DIR}/bin/mpicxx
-    CONFIGURE_FLAGS+=" --with-MPICXX=${MPI_ROOT_DIR}/bin/mpic++"
-else
-    LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
-    case $LINUX_DISTRIBUTION in
-        CO7|CO8|FD30|FD32|FD34)
-           # check whether openmpi is installed
-           x=$(yum list installed |grep openmpi)
-           if [ $? -ne 0 ]; then
-               echo "ERROR: openMPI is not installed!"
-               exit 1
-           fi
-           export CC=/usr/lib64/openmpi/bin/mpicc
-           export CXX=/usr/lib64/openmpi/bin/mpicxx
-           export PATH=$PATH:/usr/lib64/openmpi/bin
-           CONFIGURE_FLAGS+=" --with-MPICXX=/usr/lib64/openmpi/bin/mpic++"
-           ;;
-       *)
-           ;;
-    esac
-fi
+CONFIGURE_FLAGS+=" --with-MPICXX=${MPICXX}"
 
 rm -rf $BUILD_DIR
 mkdir $BUILD_DIR

diff --git a/products/env_scripts/openmpi.py b/products/env_scripts/openmpi.py
index 6c17a38fb21d24add2f2e15e0e0925686b2f09e0..5698ce15b10a5b0e8d57b3813c68d756bf433b4c 100644 (file)
--- a/products/env_scripts/openmpi.py
+++ b/products/env_scripts/openmpi.py
@@ -9,32 +9,31 @@ def set_env(env, prereq_dir, version):
     env.set('MPI_ROOT_DIR', prereq_dir)  # update for cmake  
     env.set('MPI_ROOT', prereq_dir)
     env.set('MPI_C_FOUND', os.path.join(prereq_dir,'lib','libmpi.so'))
-    root = env.get('OPENMPIDIR')
-    
-    env.prepend('PATH', os.path.join(root, 'bin'))
-    env.prepend('PATH', os.path.join(root, 'include'))
-    env.prepend('LD_LIBRARY_PATH', os.path.join(root, 'lib'))
-    env.prepend('C_INCLUDE_PATH', os.path.join(root, 'include'))  # needed for parallel h5py
+    env.prepend('PATH', os.path.join(prereq_dir, 'bin'))
+    env.prepend('PATH', os.path.join(prereq_dir, 'include'))
+    env.prepend('LD_LIBRARY_PATH', os.path.join(prereq_dir, 'lib'))
+    env.prepend('C_INCLUDE_PATH', os.path.join(prereq_dir, 'include'))  # needed for parallel h5py
 
 def set_nativ_env(env):
     prereq_dir='/usr'
+    mpibin_dir='/usr/bin'
     try:
         import distro
         if any(distribution in distro.name().lower() for distribution in ["centos", "fedora"]) :
             prereq_dir='/usr/lib64/openmpi'
+            mpibin_dir='/usr/lib64/openmpi/bin'
+        elif any(distribution in distro.name().lower() for distribution in ["debian", "ubuntu"]) :
+            prereq_dir='/usr/lib/x86_64-linux-gnu/openmpi'
     except:
         import platform
         if any(distribution in platform.linux_distribution()[0].lower() for distribution in ["centos", "fedora"]) :
             prereq_dir='/usr/lib64/openmpi'
+            mpibin_dir='/usr/lib64/openmpi/bin'
+
     env.set('MPI_ROOT_DIR', prereq_dir)
     env.set('OPENMPIDIR', prereq_dir)
     env.set('MPI_ROOT', prereq_dir)
-    mpiclib_dir=prereq_dir
-    try:
-        if "debian" in distro.name().lower() and any(version in distro.version() for version in ["10"]) :
-            mpiclib_dir='/usr/lib/x86_64-linux-gnu/openmpi'
-    except:
-        pass
-    env.set('MPI_C_FOUND', os.path.join(mpiclib_dir,'lib','libmpi.so'))
-    env.prepend('PATH', os.path.join(prereq_dir, 'bin'))
+    env.set('MPI_C_FOUND', os.path.join(prereq_dir,'lib','libmpi.so'))
+    env.prepend('PATH', mpibin_dir)
     env.prepend('LD_LIBRARY_PATH', os.path.join(prereq_dir,'lib'))
+

diff --git a/products/topo2volmesh.pyconf b/products/topo2volmesh.pyconf
index 0797b549907990abb8c579f389cdb256fe479a8a..e7fa2ec0da49e1aed674635b097214e1d3f5175e 100644 (file)
--- a/products/topo2volmesh.pyconf
+++ b/products/topo2volmesh.pyconf
@@ -22,6 +22,7 @@ default :
     }
     patches : [] 
     depend : []
+    opt_depend: ['openmpi']
     build_depend : ["cmake"]
     source_dir : $APPLICATION.workdir + $VARS.sep + 'SOURCES' + $VARS.sep + $name
     build_dir : $APPLICATION.workdir + $VARS.sep + 'BUILD' + $VARS.sep + $name