X-Git-Url: http://git.salome-platform.org/gitweb/?a=blobdiff_plain;f=src%2FMEDLoader%2FMEDFileMeshElt.cxx;h=96982a4b18adf18907c2486887fe8432768df9ad;hb=b219559763498c4bd10c730cd3d2c62b1eed45db;hp=510ea78d2b26786977246fcae30281fa456d35d6;hpb=f1a947b32a36d8dc8e3079b25305bb50e8cb59a0;p=tools%2Fmedcoupling.git diff --git a/src/MEDLoader/MEDFileMeshElt.cxx b/src/MEDLoader/MEDFileMeshElt.cxx index 510ea78d2..96982a4b1 100644 --- a/src/MEDLoader/MEDFileMeshElt.cxx +++ b/src/MEDLoader/MEDFileMeshElt.cxx @@ -1,9 +1,9 @@ -// Copyright (C) 2007-2013 CEA/DEN, EDF R&D +// Copyright (C) 2007-2019 CEA/DEN, EDF R&D // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either -// version 2.1 of the License. +// version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of @@ -19,41 +19,132 @@ // Author : Anthony Geay (CEA/DEN) #include "MEDFileMeshElt.hxx" +#include "MEDFileSafeCaller.txx" +#include "MEDFileMeshReadSelector.hxx" +#include "MEDFileBasis.hxx" #include "MEDCouplingUMesh.hxx" +#include "InterpKernelException.hxx" #include "InterpKernelAutoPtr.hxx" #include "CellModel.hxx" #include -extern med_geometry_type typmai3[32]; +extern med_geometry_type typmai3[34]; -using namespace ParaMEDMEM; +using namespace MEDCoupling; -MEDFileUMeshPerType *MEDFileUMeshPerType::New(med_idt fid, const char *mName, int dt, int it, int mdim, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType geoElt2) +MEDFileUMeshPerTypeCommon *MEDFileUMeshPerTypeCommon::New() +{ + return new MEDFileUMeshPerTypeCommon; +} + +void MEDFileUMeshPerTypeCommon::loadCommonPart(med_idt fid, const char *mName, int dt, int it, mcIdType curNbOfElem, med_geometry_type geoElt, + med_entity_type entity, MEDFileMeshReadSelector *mrs) +{ + med_bool changement,transformation; + _fam=0; + if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0) + { + if(!mrs || mrs->isCellFamilyFieldReading()) + { + MCAuto miFam=DataArrayMedInt::New(); + miFam->alloc(curNbOfElem,1); + if(MEDmeshEntityFamilyNumberRd(fid,mName,dt,it,entity,geoElt,miFam->getPointer())!=0) + std::fill(miFam->getPointer(),miFam->getPointer()+curNbOfElem,0); + _fam=FromMedIntArray( miFam ); + } + } + _num=0; + if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_NUMBER,MED_NODAL,&changement,&transformation)>0) + { + if(!mrs || mrs->isCellNumFieldReading()) + { + MCAuto miNum=DataArrayMedInt::New(); + miNum->alloc(curNbOfElem,1); + if(MEDmeshEntityNumberRd(fid,mName,dt,it,entity,geoElt,miNum->getPointer())!=0) + miNum=0; + _num=FromMedIntArray(miNum); + } + } + _names=0; + if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_NAME,MED_NODAL,&changement,&transformation)>0) + { + if(!mrs || mrs->isCellNameFieldReading()) + { + _names=DataArrayAsciiChar::New(); + _names->alloc(curNbOfElem+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end + if(MEDmeshEntityNameRd(fid,mName,dt,it,entity,geoElt,_names->getPointer())!=0) + _names=0; + else + _names->reAlloc(curNbOfElem);//not a bug to avoid the memory corruption due to last \0 at the end + } + } +} + +std::size_t MEDFileUMeshPerTypeCommon::getHeapMemorySizeWithoutChildren() const +{ + return 0; +} + +std::vector MEDFileUMeshPerTypeCommon::getDirectChildrenWithNull() const +{ + std::vector ret; + ret.push_back((const DataArrayIdType *)_num); + ret.push_back((const DataArrayIdType *)_fam); + ret.push_back((const DataArrayAsciiChar *)_names); + return ret; +} + +MEDFileUMeshPerType *MEDFileUMeshPerType::New(med_idt fid, const char *mName, int dt, int it, int mdim, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType geoElt2, MEDFileMeshReadSelector *mrs) { med_entity_type whichEntity; if(!isExisting(fid,mName,dt,it,geoElt,whichEntity)) return 0; - return new MEDFileUMeshPerType(fid,mName,dt,it,mdim,geoElt,geoElt2,whichEntity); + return new MEDFileUMeshPerType(fid,mName,dt,it,mdim,geoElt,geoElt2,whichEntity,mrs); +} + +MEDFileUMeshPerType *MEDFileUMeshPerType::NewPart(med_idt fid, const char *mName, int dt, int it, int mdim, INTERP_KERNEL::NormalizedCellType geoElt2, mcIdType strt, mcIdType stp, mcIdType step, MEDFileMeshReadSelector *mrs) +{ + int geoElt2i((int)geoElt2); + if(geoElt2i<0 || geoElt2i>=34) + throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::NewPart : Not recognized MEDCoupling/MEDLoader geometric type !"); + med_geometry_type geoElt(typmai3[geoElt2]); + med_entity_type whichEntity; + if(!isExisting(fid,mName,dt,it,geoElt,whichEntity)) + throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::NewPart : The specified geo type is not present in the specified mesh !"); + MCAuto ret(new MEDFileUMeshPerType); + ret->loadPart(fid,mName,dt,it,mdim,geoElt,geoElt2,whichEntity,strt,stp,step,mrs); + return ret.retn(); +} + +std::size_t MEDFileUMeshPerType::getHeapMemorySizeWithoutChildren() const +{ + return MEDFileUMeshPerTypeCommon::getHeapMemorySizeWithoutChildren()+0; +} + +std::vector MEDFileUMeshPerType::getDirectChildrenWithNull() const +{ + std::vector ret(MEDFileUMeshPerTypeCommon::getDirectChildrenWithNull()); + ret.push_back((const MEDCoupling1GTUMesh *)_m); + return ret; } bool MEDFileUMeshPerType::isExisting(med_idt fid, const char *mName, int dt, int it, med_geometry_type geoElt, med_entity_type& whichEntity) { static const med_entity_type entities[3]={MED_CELL,MED_DESCENDING_FACE,MED_DESCENDING_EDGE}; - int nbOfElt=0; + mcIdType nbOfElt=0; for(int i=0;i<3;i++) { med_bool changement,transformation; - int tmp=MEDmeshnEntity(fid,mName,dt,it,entities[i],geoElt,MED_CONNECTIVITY,MED_NODAL, - &changement,&transformation); + mcIdType tmp(MEDmeshnEntity(fid,mName,dt,it,entities[i],geoElt,MED_CONNECTIVITY,MED_NODAL,&changement,&transformation)); if(tmp>nbOfElt) { nbOfElt=tmp; whichEntity=entities[i]; if(i>0) - std::cerr << "WARNING : MEDFile has been detected to be no compilant with MED 3 : Please change entity in MEDFile for geotype " << geoElt << std::endl; + std::cerr << "WARNING : MEDFile has been detected to be noncompliant with MED 3 : Please change entity in MEDFile for geotype " << geoElt << std::endl; } } return nbOfElt>0; @@ -61,149 +152,203 @@ bool MEDFileUMeshPerType::isExisting(med_idt fid, const char *mName, int dt, int int MEDFileUMeshPerType::getDim() const { - const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(_type); - return cm.getDimension(); + return _m->getMeshDimension(); +} + +MEDFileUMeshPerType::MEDFileUMeshPerType() +{ } MEDFileUMeshPerType::MEDFileUMeshPerType(med_idt fid, const char *mName, int dt, int it, int mdim, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type, - med_entity_type entity):_type(type),_entity(entity) + med_entity_type entity, MEDFileMeshReadSelector *mrs) { med_bool changement,transformation; - int curNbOfElem=MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_CONNECTIVITY,MED_NODAL, - &changement,&transformation); - if(type!=INTERP_KERNEL::NORM_POLYGON && type!=INTERP_KERNEL::NORM_POLYHED) + mcIdType curNbOfElem(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_CONNECTIVITY,MED_NODAL,&changement,&transformation)); + const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type)); + if(!cm.isDynamic()) { - loadFromStaticType(fid,mName,dt,it,mdim,curNbOfElem,geoElt,type,entity); + loadFromStaticType(fid,mName,dt,it,mdim,curNbOfElem,geoElt,type,entity,mrs); return; } - if(type==INTERP_KERNEL::NORM_POLYGON) + if(type==INTERP_KERNEL::NORM_POLYGON || type==INTERP_KERNEL::NORM_QPOLYG) { - loadPolyg(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity); + loadPolyg(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity,mrs); return; } //if(type==INTERP_KERNEL::NORM_POLYHED) - loadPolyh(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity); + loadPolyh(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity,mrs); } -void MEDFileUMeshPerType::loadFromStaticType(med_idt fid, const char *mName, int dt, int it, int mdim, int curNbOfElem, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type, - med_entity_type entity) +void MEDFileUMeshPerType::loadPart(med_idt fid, const char *mName, int dt, int it, int mdim, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type, + med_entity_type entity, mcIdType strt, mcIdType end, mcIdType step, MEDFileMeshReadSelector *mrs) { - _conn=DataArrayInt::New(); - int nbOfNodesPerCell=(geoElt%100); - _conn->alloc((nbOfNodesPerCell+1)*curNbOfElem,1); - _conn_index=DataArrayInt::New(); - _conn_index->alloc(curNbOfElem+1,1); - INTERP_KERNEL::AutoPtr connTab=new int[(nbOfNodesPerCell)*curNbOfElem]; - MEDmeshElementConnectivityRd(fid,mName,dt,it,entity,geoElt,MED_NODAL,MED_FULL_INTERLACE,connTab); - loadCommonPart(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity); - int *w1=_conn->getPointer(); - int *w2=_conn_index->getPointer(); - *w2++=0; - const int *wi=connTab; - for(int i=0;i(),-1)); - *w2=w2[-1]+nbOfNodesPerCell+1; + loadPartStaticType(fid,mName,dt,it,mdim,curNbOfElem,geoElt,type,entity,strt,end,step,mrs); } + else + throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::loadPart : not implemented yet for the dynamic type !"); } -void MEDFileUMeshPerType::loadCommonPart(med_idt fid, const char *mName, int dt, int it, int mdim, int curNbOfElem, med_geometry_type geoElt, - med_entity_type entity) +void MEDFileUMeshPerType::loadFromStaticType(med_idt fid, const char *mName, int dt, int it, int mdim, mcIdType curNbOfElem, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type, + med_entity_type entity, MEDFileMeshReadSelector *mrs) +{ + _m=MEDCoupling1SGTUMesh::New(mName,type); + MEDCoupling1SGTUMesh *mc(dynamic_cast((MEDCoupling1GTUMesh *)_m)); + MCAuto conn(DataArrayMedInt::New()); + mcIdType nbOfNodesPerCell(mc->getNumberOfNodesPerCell()); + conn->alloc(nbOfNodesPerCell*curNbOfElem,1); + MEDFILESAFECALLERRD0(MEDmeshElementConnectivityRd,(fid,mName,dt,it,entity,geoElt,MED_NODAL,MED_FULL_INTERLACE,conn->getPointer())); + std::transform(conn->begin(),conn->end(),conn->getPointer(),std::bind2nd(std::plus(),-1)); + mc->setNodalConnectivity(FromMedIntArray(conn)); + loadCommonPart(fid,mName,dt,it,curNbOfElem,geoElt,entity,mrs); +} + +void MEDFileUMeshPerType::loadPartStaticType(med_idt fid, const char *mName, int dt, int it, int mdim, mcIdType curNbOfElem, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type, + med_entity_type entity, mcIdType strt, mcIdType end, mcIdType step, MEDFileMeshReadSelector *mrs) +{ + if(strt<0) + throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::loadPartStaticType : start pos is negative !"); + if(end>curNbOfElem) + throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::loadPartStaticType : end is after the authorized range !"); + mcIdType nbOfEltsToLoad(DataArray::GetNumberOfItemGivenBES(strt,end,step,"MEDFileUMeshPerType::loadPartStaticType")); + _m=MEDCoupling1SGTUMesh::New(mName,type); + MEDCoupling1SGTUMesh *mc(dynamic_cast((MEDCoupling1GTUMesh *)_m)); + MCAuto conn(DataArrayMedInt::New()); + mcIdType nbOfNodesPerCell(mc->getNumberOfNodesPerCell()); + conn->alloc(nbOfNodesPerCell*nbOfEltsToLoad,1); + med_filter filter=MED_FILTER_INIT; + MEDfilterBlockOfEntityCr(fid,/*nentity*/ToMedInt(curNbOfElem),/*nvaluesperentity*/1,/*nconstituentpervalue*/ToMedInt(nbOfNodesPerCell), + MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE, + /*start*/ToMedInt(strt+1),/*stride*/ToMedInt(step),/*count*/1,/*blocksize*/ToMedInt(nbOfEltsToLoad), + /*lastblocksize=useless because count=1*/0,&filter); + MEDFILESAFECALLERRD0(MEDmeshElementConnectivityAdvancedRd,(fid,mName,dt,it,entity,geoElt,MED_NODAL,&filter,conn->getPointer())); + MEDfilterClose(&filter); + std::transform(conn->begin(),conn->end(),conn->getPointer(),std::bind2nd(std::plus(),-1)); + mc->setNodalConnectivity(FromMedIntArray(conn)); + loadPartOfCellCommonPart(fid,mName,strt,end,step,dt,it,mdim,curNbOfElem,geoElt,entity,mrs); +} + +void MEDFileUMeshPerType::loadPartOfCellCommonPart(med_idt fid, const char *mName, mcIdType strt, mcIdType stp, mcIdType step, int dt, int it, int mdim, mcIdType curNbOfElem, med_geometry_type geoElt, med_entity_type entity, MEDFileMeshReadSelector *mrs) { med_bool changement,transformation; - _fam=DataArrayInt::New(); - _fam->alloc(curNbOfElem,1); + _fam=0; + mcIdType nbOfEltsToLoad(DataArray::GetNumberOfItemGivenBES(strt,stp,step,"MEDFileUMeshPerType::loadPartOfCellCommonPart")); if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0) { - if(MEDmeshEntityFamilyNumberRd(fid,mName,dt,it,entity,geoElt,_fam->getPointer())!=0) - std::fill(_fam->getPointer(),_fam->getPointer()+curNbOfElem,0); + if(!mrs || mrs->isCellFamilyFieldReading()) + { + MCAuto miFam(DataArrayMedInt::New()); + miFam->alloc(nbOfEltsToLoad,1); + med_filter filter=MED_FILTER_INIT; + MEDfilterBlockOfEntityCr(fid,/*nentity*/ToMedInt(curNbOfElem),/*nvaluesperentity*/1,/*nconstituentpervalue*/1, + MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE, + /*start*/ToMedInt(strt+1),/*stride*/ToMedInt(step),/*count*/1,/*blocksize*/ToMedInt(nbOfEltsToLoad), + /*lastblocksize=useless because count=1*/0,&filter); + if(MEDmeshEntityAttributeAdvancedRd(fid,mName,MED_FAMILY_NUMBER,dt,it,entity,geoElt,&filter,miFam->getPointer())!=0) + miFam->fillWithZero(); + _fam=FromMedIntArray(miFam); + MEDfilterClose(&filter); + } } - else - std::fill(_fam->getPointer(),_fam->getPointer()+curNbOfElem,0); + _num=0; if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_NUMBER,MED_NODAL,&changement,&transformation)>0) { - _num=DataArrayInt::New(); - _num->alloc(curNbOfElem,1); - if(MEDmeshEntityNumberRd(fid,mName,dt,it,entity,geoElt,_num->getPointer())!=0) - _num=0; + if(!mrs || mrs->isCellNumFieldReading()) + { + MCAuto miNum(DataArrayMedInt::New()); + miNum->alloc(nbOfEltsToLoad,1); + med_filter filter=MED_FILTER_INIT; + MEDfilterBlockOfEntityCr(fid,/*nentity*/ToMedInt(curNbOfElem),/*nvaluesperentity*/1,/*nconstituentpervalue*/1, + MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE, + /*start*/ToMedInt(strt+1),/*stride*/ToMedInt(step),/*count*/1,/*blocksize*/ToMedInt(nbOfEltsToLoad), + /*lastblocksize=useless because count=1*/0,&filter); + if(MEDmeshEntityAttributeAdvancedRd(fid,mName,MED_NUMBER,dt,it,entity,geoElt,&filter,miNum->getPointer())!=0) + miNum->fillWithZero(); + _num=FromMedIntArray(miNum); + MEDfilterClose(&filter); + } } - else - _num=0; + _names=0; if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_NAME,MED_NODAL,&changement,&transformation)>0) { - _names=DataArrayAsciiChar::New(); - _names->alloc(curNbOfElem+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end - if(MEDmeshEntityNameRd(fid,mName,dt,it,entity,geoElt,_names->getPointer())!=0) - _names=0; - else - _names->reAlloc(curNbOfElem);//not a bug to avoid the memory corruption due to last \0 at the end + if(!mrs || mrs->isCellNameFieldReading()) + { + _names=DataArrayAsciiChar::New(); + _names->alloc(nbOfEltsToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end + med_filter filter=MED_FILTER_INIT; + MEDfilterBlockOfEntityCr(fid,/*nentity*/ToMedInt(curNbOfElem),/*nvaluesperentity*/1,/*nconstituentpervalue*/1, + MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE, + /*start*/ToMedInt(strt+1),/*stride*/ToMedInt(step),/*count*/1,/*blocksize*/ToMedInt(nbOfEltsToLoad), + /*lastblocksize=useless because count=1*/0,&filter); + if(MEDmeshEntityAttributeAdvancedRd(fid,mName,MED_NAME,dt,it,entity,geoElt,&filter,_names->getPointer())!=0) + _names=0; + else + _names->reAlloc(nbOfEltsToLoad);//not a bug to avoid the memory corruption due to last \0 at the end + MEDfilterClose(&filter); + } } } -void MEDFileUMeshPerType::loadPolyg(med_idt fid, const char *mName, int dt, int it, int mdim, int arraySize, med_geometry_type geoElt, - med_entity_type entity) +void MEDFileUMeshPerType::loadPolyg(med_idt fid, const char *mName, int dt, int it, int mdim, mcIdType arraySize, med_geometry_type geoElt, + med_entity_type entity, MEDFileMeshReadSelector *mrs) { med_bool changement,transformation; - med_int curNbOfElem=MEDmeshnEntity(fid,mName,dt,it,entity,MED_POLYGON,MED_INDEX_NODE,MED_NODAL,&changement,&transformation)-1; - _conn_index=DataArrayInt::New(); - _conn_index->alloc(curNbOfElem+1,1); - _conn=DataArrayInt::New(); - _conn->alloc(arraySize+curNbOfElem,1); - INTERP_KERNEL::AutoPtr locConn=new int[arraySize]; - MEDmeshPolygonRd(fid,mName,dt,it,MED_CELL,MED_NODAL,_conn_index->getPointer(),locConn); - int *w1=_conn->getPointer(); - int *w2=_conn_index->getPointer(); - const int *wi=locConn; - for(int i=0;i(),-1)); - wi=wi2; - *w2=*w2-1+i; - } - *w2=*w2-1+curNbOfElem; - loadCommonPart(fid,mName,dt,it,mdim,curNbOfElem,MED_POLYGON,entity); + mcIdType curNbOfElem(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_INDEX_NODE,MED_NODAL,&changement,&transformation)-1); + _m=MEDCoupling1DGTUMesh::New(mName,geoElt==MED_POLYGON?INTERP_KERNEL::NORM_POLYGON:INTERP_KERNEL::NORM_QPOLYG); + MCAuto mc(DynamicCast(_m)); + MCAuto conn(DataArrayMedInt::New()),connI(DataArrayMedInt::New()); + conn->alloc(arraySize,1); connI->alloc(curNbOfElem+1,1); + MEDFILESAFECALLERRD0(MEDmeshPolygon2Rd,(fid,mName,dt,it,MED_CELL,geoElt,MED_NODAL,connI->getPointer(),conn->getPointer())); + std::transform(conn->begin(),conn->end(),conn->getPointer(),std::bind2nd(std::plus(),-1)); + std::transform(connI->begin(),connI->end(),connI->getPointer(),std::bind2nd(std::plus(),-1)); + mc->setNodalConnectivity(FromMedIntArray(conn),FromMedIntArray(connI)); + loadCommonPart(fid,mName,dt,it,curNbOfElem,geoElt,entity,mrs); } -void MEDFileUMeshPerType::loadPolyh(med_idt fid, const char *mName, int dt, int it, int mdim, int connFaceLgth, med_geometry_type geoElt, - med_entity_type entity) +void MEDFileUMeshPerType::loadPolyh(med_idt fid, const char *mName, int dt, int it, int mdim, mcIdType connFaceLgth, med_geometry_type geoElt, + med_entity_type entity, MEDFileMeshReadSelector *mrs) { med_bool changement,transformation; - med_int indexFaceLgth=MEDmeshnEntity(fid,mName,dt,it,MED_CELL,MED_POLYHEDRON,MED_INDEX_NODE,MED_NODAL,&changement,&transformation); - int curNbOfElem=MEDmeshnEntity(fid,mName,dt,it,MED_CELL,MED_POLYHEDRON,MED_INDEX_FACE,MED_NODAL,&changement,&transformation)-1; - INTERP_KERNEL::AutoPtr index=new int[curNbOfElem+1]; - INTERP_KERNEL::AutoPtr indexFace=new int[indexFaceLgth]; - INTERP_KERNEL::AutoPtr locConn=new int[connFaceLgth]; - MEDmeshPolyhedronRd(fid,mName,dt,it,MED_CELL,MED_NODAL,index,indexFace,locConn); - int arraySize=connFaceLgth; - for(int i=0;i mc(DynamicCastSafe(_m)); + INTERP_KERNEL::AutoPtr index=new med_int[curNbOfElem+1]; + INTERP_KERNEL::AutoPtr indexFace=new med_int[indexFaceLgth]; + INTERP_KERNEL::AutoPtr locConn=new med_int[connFaceLgth]; + MEDFILESAFECALLERRD0(MEDmeshPolyhedronRd,(fid,mName,dt,it,MED_CELL,MED_NODAL,index,indexFace,locConn)); + MCAuto conn(DataArrayIdType::New()),connI(DataArrayIdType::New()); + mcIdType arraySize=connFaceLgth; + for(mcIdType i=0;ialloc(arraySize+curNbOfElem,1); - int *wFinalConn=_conn->getPointer(); - _conn_index=DataArrayInt::New(); - _conn_index->alloc(curNbOfElem+1,1); - int *finalIndex=_conn_index->getPointer(); + conn=DataArrayIdType::New(); + conn->alloc(arraySize,1); + mcIdType *wFinalConn=conn->getPointer(); + connI->alloc(curNbOfElem+1,1); + mcIdType *finalIndex(connI->getPointer()); finalIndex[0]=0; - for(int i=0;i(),-1)); - for(int j=index[i];j(),-1)); + for(mcIdType j=index[i];j(),-1)); + wFinalConn=std::transform(locConn+indexFace[j]-1,locConn+indexFace[j+1]-1,wFinalConn,std::bind2nd(std::plus(),-1)); } } - loadCommonPart(fid,mName,dt,it,mdim,curNbOfElem,MED_POLYHEDRON,entity); + mc->setNodalConnectivity(conn,connI); + loadCommonPart(fid,mName,dt,it,curNbOfElem,MED_POLYHEDRON,entity,mrs); } -void MEDFileUMeshPerType::write(med_idt fid, const char *mname, int mdim, const MEDCouplingUMesh *m, const DataArrayInt *fam, const DataArrayInt *num, const DataArrayAsciiChar *names) +void MEDFileUMeshPerType::Write(med_idt fid, const std::string& mname, int mdim, const MEDCoupling1GTUMesh *m, const DataArrayIdType *fam, const DataArrayIdType *num, const DataArrayAsciiChar *names) { - int nbOfCells=m->getNumberOfCells(); + mcIdType nbOfCells=m->getNumberOfCells(); if(nbOfCells<1) return ; int dt,it; @@ -211,51 +356,47 @@ void MEDFileUMeshPerType::write(med_idt fid, const char *mname, int mdim, const INTERP_KERNEL::NormalizedCellType ikt=m->getTypeOfCell(0); const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(ikt); med_geometry_type curMedType=typmai3[(int)ikt]; - const int *conn=m->getNodalConnectivity()->getConstPointer(); - const int *connI=m->getNodalConnectivityIndex()->getConstPointer(); - if(ikt!=INTERP_KERNEL::NORM_POLYGON && ikt!=INTERP_KERNEL::NORM_POLYHED) + if(!cm.isDynamic()) { - int nbNodesPerCell=cm.getNumberOfNodes(); - INTERP_KERNEL::AutoPtr tab=new int[nbNodesPerCell*nbOfCells]; - int *w=tab; - for(int i=0;i(),1)); - MEDmeshElementConnectivityWr(fid,mname,dt,it,timm,MED_CELL,curMedType,MED_NODAL,MED_FULL_INTERLACE,nbOfCells,tab); + const MEDCoupling1SGTUMesh *m0(dynamic_cast(m)); + if(!m0) + throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::Write : internal error #1 !"); + MCAuto arr(DataArrayMedInt::Copy(m0->getNodalConnectivity())); + std::transform(arr->begin(),arr->end(),arr->getPointer(),std::bind2nd(std::plus(),1)); + MEDFILESAFECALLERWR0(MEDmeshElementConnectivityWr,(fid,mname.c_str(),dt,it,timm,MED_CELL,curMedType,MED_NODAL,MED_FULL_INTERLACE,ToMedInt(nbOfCells),arr->begin())); } else { - if(ikt==INTERP_KERNEL::NORM_POLYGON) + const MEDCoupling1DGTUMesh *m0(dynamic_cast(m)); + if(!m0) + throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::Write : internal error #2 !"); + if(ikt==INTERP_KERNEL::NORM_POLYGON || ikt==INTERP_KERNEL::NORM_QPOLYG) { - INTERP_KERNEL::AutoPtr tab1=new int[nbOfCells+1]; - INTERP_KERNEL::AutoPtr tab2=new int[m->getMeshLength()]; - int *wI=tab1; *wI=1; - int *w=tab2; - for(int i=0;i(),1)); - } - MEDmeshPolygonWr(fid,mname,dt,it,timm,MED_CELL,MED_NODAL,nbOfCells+1,tab1,tab2); + MCAuto arr(DataArrayMedInt::Copy(m0->getNodalConnectivity())),arrI(DataArrayMedInt::Copy(m0->getNodalConnectivityIndex())); + std::transform(arr->begin(),arr->end(),arr->getPointer(),std::bind2nd(std::plus(),1)); + std::transform(arrI->begin(),arrI->end(),arrI->getPointer(),std::bind2nd(std::plus(),1)); + MEDFILESAFECALLERWR0(MEDmeshPolygon2Wr,(fid,mname.c_str(),dt,it,timm,MED_CELL,ikt==INTERP_KERNEL::NORM_POLYGON?MED_POLYGON:MED_POLYGON2,MED_NODAL,ToMedInt(nbOfCells+1),arrI->begin(),arr->begin())); } else { - int meshLgth=m->getMeshLength(); - int nbOfFaces=std::count(conn,conn+meshLgth,-1)+nbOfCells; - INTERP_KERNEL::AutoPtr tab1=new int[nbOfCells+1]; - int *w1=tab1; *w1=1; - INTERP_KERNEL::AutoPtr tab2=new int[nbOfFaces+1]; - int *w2=tab2; *w2=1; - INTERP_KERNEL::AutoPtr bigtab=new int[meshLgth-nbOfCells]; - int *bt=bigtab; - for(int i=0;igetNodalConnectivity()->begin()),*connI(m0->getNodalConnectivityIndex()->begin()); + mcIdType meshLgth=m0->getNodalConnectivityLength(); + mcIdType nbOfFaces=ToIdType(std::count(conn,conn+meshLgth,-1)+nbOfCells); + INTERP_KERNEL::AutoPtr tab1=new med_int[nbOfCells+1]; + med_int *w1=tab1; *w1=1; + INTERP_KERNEL::AutoPtr tab2=new med_int[nbOfFaces+1]; + med_int *w2=tab2; *w2=1; + INTERP_KERNEL::AutoPtr bigtab=new med_int[meshLgth]; + med_int *bt=bigtab; + for(mcIdType i=0;i(),1)); - int nbOfNode=std::distance(w,wend); - w2[1]=w2[0]+nbOfNode; + const mcIdType *wend=std::find(w,conn+connI[i+1],-1); + bt=std::transform(w,wend,bt,std::bind2nd(std::plus(),1)); + std::size_t nbOfNode=std::distance(w,wend); + w2[1]=w2[0]+(med_int)nbOfNode; if(wend!=conn+connI[i+1]) w=wend+1; else @@ -264,13 +405,13 @@ void MEDFileUMeshPerType::write(med_idt fid, const char *mname, int mdim, const } w1[1]=w1[0]+nbOfFaces2; } - MEDmeshPolyhedronWr(fid,mname,dt,it,timm,MED_CELL,MED_NODAL,nbOfCells+1,tab1,nbOfFaces+1,tab2,bigtab); + MEDFILESAFECALLERWR0(MEDmeshPolyhedronWr,(fid,mname.c_str(),dt,it,timm,MED_CELL,MED_NODAL,ToMedInt(nbOfCells+1),tab1,ToMedInt(nbOfFaces+1),tab2,bigtab)); } } if(fam) - MEDmeshEntityFamilyNumberWr(fid,mname,dt,it,MED_CELL,curMedType,nbOfCells,fam->getConstPointer()); + MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_CELL,curMedType,ToMedInt(nbOfCells),ToMedIntArray(fam)->getConstPointer())); if(num) - MEDmeshEntityNumberWr(fid,mname,dt,it,MED_CELL,curMedType,nbOfCells,num->getConstPointer()); + MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_CELL,curMedType,ToMedInt(nbOfCells),ToMedIntArray(num)->getConstPointer())); if(names) { if(names->getNumberOfComponents()!=MED_SNAME_SIZE) @@ -279,6 +420,6 @@ void MEDFileUMeshPerType::write(med_idt fid, const char *mname, int mdim, const oss << " ! The array has " << names->getNumberOfComponents() << " components !"; throw INTERP_KERNEL::Exception(oss.str().c_str()); } - MEDmeshEntityNameWr(fid,mname,dt,it,MED_CELL,curMedType,nbOfCells,names->getConstPointer()); + MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_CELL,curMedType,ToMedInt(nbOfCells),names->getConstPointer())); } }