X-Git-Url: http://git.salome-platform.org/gitweb/?a=blobdiff_plain;f=src%2FMEDLoader%2FMEDFileMesh.cxx;h=66355a7dc44770bba2ca97bd4d0866471f271d82;hb=68a0c40d78df28a0ecf45af75c138c6789f25bf1;hp=f9074f9709045520a4c6016ecb4919b785ec95eb;hpb=c7bf7fbf92e3677edc83d51fcc5e5e8aabb53b68;p=tools%2Fmedcoupling.git diff --git a/src/MEDLoader/MEDFileMesh.cxx b/src/MEDLoader/MEDFileMesh.cxx index f9074f970..66355a7dc 100644 --- a/src/MEDLoader/MEDFileMesh.cxx +++ b/src/MEDLoader/MEDFileMesh.cxx @@ -1,4 +1,4 @@ -// Copyright (C) 2007-2014 CEA/DEN, EDF R&D +// Copyright (C) 2007-2015 CEA/DEN, EDF R&D // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public @@ -660,6 +660,81 @@ std::vector MEDFileMesh::removeOrphanFamilies() return ret; } +/*! + * This method operates only on maps in \a this. The arrays are not considered here. So this method will remove a family (except "FAMILLE_ZERO" family) if no group lies on it whatever + * this family is orphan or not. + * + * \warning this method is different from removeOrphanFamilies that scans family field array to find orphan families. + */ +void MEDFileMesh::removeFamiliesReferedByNoGroups() +{ + std::map fams; + std::set sfams; + for(std::map::const_iterator it=_families.begin();it!=_families.end();it++) + sfams.insert((*it).first); + for(std::map >::const_iterator it0=_groups.begin();it0!=_groups.end();it0++) + for(std::vector::const_iterator it1=(*it0).second.begin();it1!=(*it0).second.end();it1++) + sfams.erase(*it1); + for(std::set::const_iterator it=sfams.begin();it!=sfams.end();it++) + if(*it!=DFT_FAM_NAME) + _families.erase(*it); +} + +/*! + * This method has no impact on groups. This method only works on families. This method firstly removes families not refered by any groups in \a this, then all unused entities + * are put as belonging to family 0 ("FAMILLE_ZERO"). Finally, all orphanFamilies are killed. + * This method raises an exception if "FAMILLE_ZERO" is already belonging to a group. + * + * \sa MEDFileMesh::removeOrphanFamilies + */ +void MEDFileMesh::rearrangeFamilies() +{ + checkOrphanFamilyZero(); + removeFamiliesReferedByNoGroups(); + // + std::vector levels(getNonEmptyLevelsExt()); + std::set idsRefed; + for(std::map::const_iterator it=_families.begin();it!=_families.end();it++) + idsRefed.insert((*it).second); + for(std::vector::const_iterator it=levels.begin();it!=levels.end();it++) + { + const DataArrayInt *fams(0); + try + { + fams=getFamilyFieldAtLevel(*it); + } + catch(INTERP_KERNEL::Exception& e) { } + if(!fams) + continue; + std::vector v(fams->getNumberOfTuples(),false); + for(std::set::const_iterator pt=idsRefed.begin();pt!=idsRefed.end();pt++) + fams->switchOnTupleEqualTo(*pt,v); + MEDCouplingAutoRefCountObjectPtr unfetchedIds(DataArrayInt::BuildListOfSwitchedOff(v)); + if(!unfetchedIds->empty()) + { + MEDCouplingAutoRefCountObjectPtr newFams(fams->deepCpy()); + newFams->setPartOfValuesSimple3(0,unfetchedIds->begin(),unfetchedIds->end(),0,1,1); + setFamilyFieldArr(*it,newFams); + } + } + removeOrphanFamilies(); +} + +/*! + * This method only checks that "FAMILLE_ZERO" is orphan (not belonging to a group). + */ +void MEDFileMesh::checkOrphanFamilyZero() const +{ + for(std::map >::const_iterator it=_groups.begin();it!=_groups.end();it++) + { + if(std::find((*it).second.begin(),(*it).second.end(),DFT_FAM_NAME)!=(*it).second.end()) + { + std::ostringstream oss; oss << "MEDFileMesh::rearrangeFamilies : Groups \"" << (*it).first << "\" is lying on family \"" << DFT_FAM_NAME << "\" !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + } +} + /*! * Renames a group in \a this mesh. * \param [in] oldName - a current name of the group to rename. @@ -2068,6 +2143,8 @@ MEDFileMesh *MEDFileUMesh::deepCpy() const if((const MEDFileUMeshSplitL1 *)(*it)) ret->_ms[i]=(*it)->deepCpy(ret->_coords); } + if((const PartDefinition*)_part_coords) + ret->_part_coords=_part_coords->deepCpy(); return ret.retn(); } @@ -2176,7 +2253,15 @@ bool MEDFileUMesh::isEqual(const MEDFileMesh *other, double eps, std::string& wh return false; } } - return true; + const PartDefinition *pd0(_part_coords),*pd1(otherC->_part_coords); + if(!pd0 && !pd1) + return true; + if((!pd0 && pd1) || (pd0 && !pd1)) + { + what=std::string("node part def is defined only for one among this or other !"); + return false; + } + return pd0->isEqual(pd1,what); } /*! @@ -2782,6 +2867,12 @@ int MEDFileUMesh::getNumberOfNodes() const return coo->getNumberOfTuples(); } +int MEDFileUMesh::getNumberOfCellsAtLevel(int meshDimRelToMaxExt) const +{ + const MEDFileUMeshSplitL1 *l1=getMeshAtLevSafe(meshDimRelToMaxExt); + return l1->getNumberOfCells(); +} + bool MEDFileUMesh::hasImplicitPart() const { return false; @@ -3203,7 +3294,7 @@ const MEDFileUMeshSplitL1 *MEDFileUMesh::getMeshAtLevSafe(int meshDimRelToMaxExt throw INTERP_KERNEL::Exception("Dimension request is invalid (>1) !"); int tracucedRk=-meshDimRelToMaxExt; if(tracucedRk>=(int)_ms.size()) - throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !"); + throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !"); if((const MEDFileUMeshSplitL1 *)_ms[tracucedRk]==0) throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !"); return _ms[tracucedRk]; @@ -3217,7 +3308,7 @@ MEDFileUMeshSplitL1 *MEDFileUMesh::getMeshAtLevSafe(int meshDimRelToMaxExt) throw INTERP_KERNEL::Exception("Dimension request is invalid (>1) !"); int tracucedRk=-meshDimRelToMaxExt; if(tracucedRk>=(int)_ms.size()) - throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !"); + throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !"); if((const MEDFileUMeshSplitL1 *)_ms[tracucedRk]==0) throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !"); return _ms[tracucedRk]; @@ -3499,24 +3590,35 @@ struct MEDLoaderAccVisit1 */ DataArrayInt *MEDFileUMesh::zipCoords() { - const DataArrayDouble *coo=getCoords(); + const DataArrayDouble *coo(getCoords()); if(!coo) throw INTERP_KERNEL::Exception("MEDFileUMesh::zipCoords : no coordinates set in this !"); - int nbOfNodes=coo->getNumberOfTuples(); + int nbOfNodes(coo->getNumberOfTuples()); std::vector nodeIdsInUse(nbOfNodes,false); - std::vector neLevs=getNonEmptyLevels(); + std::vector neLevs(getNonEmptyLevels()); for(std::vector::const_iterator lev=neLevs.begin();lev!=neLevs.end();lev++) { - MEDCouplingAutoRefCountObjectPtr m=getMeshAtLevel(*lev); - m->computeNodeIdsAlg(nodeIdsInUse); + const MEDFileUMeshSplitL1 *zeLev(getMeshAtLevSafe(*lev)); + if(zeLev->isMeshStoredSplitByType()) + { + std::vector ms(zeLev->getDirectUndergroundSingleGeoTypeMeshes()); + for(std::vector::const_iterator it=ms.begin();it!=ms.end();it++) + if(*it) + (*it)->computeNodeIdsAlg(nodeIdsInUse); + } + else + { + MEDCouplingAutoRefCountObjectPtr mesh(zeLev->getWholeMesh(false)); + mesh->computeNodeIdsAlg(nodeIdsInUse); + } } - int nbrOfNodesInUse=(int)std::count(nodeIdsInUse.begin(),nodeIdsInUse.end(),true); + int nbrOfNodesInUse((int)std::count(nodeIdsInUse.begin(),nodeIdsInUse.end(),true)); if(nbrOfNodesInUse==nbOfNodes) - return 0; - MEDCouplingAutoRefCountObjectPtr ret=DataArrayInt::New(); ret->alloc(nbOfNodes,1); + return 0;//no need to update _part_coords + MEDCouplingAutoRefCountObjectPtr ret(DataArrayInt::New()); ret->alloc(nbOfNodes,1); std::transform(nodeIdsInUse.begin(),nodeIdsInUse.end(),ret->getPointer(),MEDLoaderAccVisit1()); - MEDCouplingAutoRefCountObjectPtr ret2=ret->invertArrayO2N2N2OBis(nbrOfNodesInUse); - MEDCouplingAutoRefCountObjectPtr newCoords=coo->selectByTupleIdSafe(ret2->begin(),ret2->end()); + MEDCouplingAutoRefCountObjectPtr ret2(ret->invertArrayO2N2N2OBis(nbrOfNodesInUse)); + MEDCouplingAutoRefCountObjectPtr newCoords(coo->selectByTupleIdSafe(ret2->begin(),ret2->end())); MEDCouplingAutoRefCountObjectPtr newFamCoords; MEDCouplingAutoRefCountObjectPtr newNameCoords; if((const DataArrayInt *)_fam_coords) @@ -3530,15 +3632,443 @@ DataArrayInt *MEDFileUMesh::zipCoords() for(std::vector< MEDCouplingAutoRefCountObjectPtr >::iterator it=_ms.begin();it!=_ms.end();it++) { if((MEDFileUMeshSplitL1*)*it) - (*it)->renumberNodesInConn(ret->begin()); + { + (*it)->renumberNodesInConn(ret->begin()); + (*it)->setCoords(_coords); + } + } + // updates _part_coords + const PartDefinition *pc(_part_coords); + if(pc) + { + MEDCouplingAutoRefCountObjectPtr tmpPD(DataArrayPartDefinition::New(ret2)); + _part_coords=tmpPD->composeWith(pc); + } + return ret.retn(); +} + +/*! + * This method performs an extrusion along a path defined by \a m1D. + * \a this is expected to be a mesh with max mesh dimension equal to 2. + * \a m1D is expected to be a mesh with space dimesion equal to 3 and mesh dimension equal to 1. + * Mesh dimensions of returned mesh is incremented by one compared to thoose in \a this. + * This method scans all levels in \a this + * and put them in the returned mesh. All groups in \a this are also put in the returned mesh. + * + * \param [in] m1D - the mesh defining the extrusion path. + * \param [in] policy - defines the policy of extrusion (see MEDCouplingUMesh::buildExtrudedMesh for more details) + * \return - a new reference on mesh (you have to deal with using decrRef). The returned mesh will have the same name than \a this. + * + * \sa MEDCouplingUMesh::buildExtrudedMesh + */ +MEDFileUMesh *MEDFileUMesh::buildExtrudedMesh(const MEDCouplingUMesh *m1D, int policy) const +{ + if(getMeshDimension()!=2) + throw INTERP_KERNEL::Exception("MEDFileUMesh::buildExtrudedMesh : this is expected to be with mesh dimension equal to 2 !"); + MEDCouplingAutoRefCountObjectPtr ret(MEDFileUMesh::New()); + m1D->checkCoherency(); + if(m1D->getMeshDimension()!=1) + throw INTERP_KERNEL::Exception("MEDFileUMesh::buildExtrudedMesh : input mesh must have a mesh dimension equal to one !"); + int nbRep(m1D->getNumberOfCells()); + std::vector levs(getNonEmptyLevels()); + std::vector grps(getGroupsNames()); + std::vector< MEDCouplingAutoRefCountObjectPtr > zeList; + DataArrayDouble *coords(0); + std::size_t nbOfLevsOut(levs.size()+1); + std::vector< MEDCouplingAutoRefCountObjectPtr > o2ns(nbOfLevsOut); + for(std::vector::const_iterator lev=levs.begin();lev!=levs.end();lev++) + { + MEDCouplingAutoRefCountObjectPtr item(getMeshAtLevel(*lev)); + item=item->clone(false); + item->changeSpaceDimension(3+(*lev),0.);//no problem non const but change DataArrayDouble for coordinates do not alter data + MEDCouplingAutoRefCountObjectPtr tmp(static_cast(m1D->deepCpy())); + tmp->changeSpaceDimension(3+(*lev),0.); + MEDCouplingAutoRefCountObjectPtr elt(item->buildExtrudedMesh(tmp,policy)); + zeList.push_back(elt); + if(*lev==0) + coords=elt->getCoords(); + } + if(!coords) + throw INTERP_KERNEL::Exception("MEDFileUMesh::buildExtrudedMesh : internal error !"); + for(std::vector< MEDCouplingAutoRefCountObjectPtr >::iterator it=zeList.begin();it!=zeList.end();it++) + { + (*it)->setName(getName()); + (*it)->setCoords(coords); + } + for(std::size_t ii=0;ii!=zeList.size();ii++) + { + int lev(levs[ii]); + MEDCouplingAutoRefCountObjectPtr elt(zeList[ii]); + if(lev<=-1) + { + MEDCouplingAutoRefCountObjectPtr elt1(getMeshAtLevel(lev+1)); + MEDCouplingAutoRefCountObjectPtr elt2(elt1->clone(false)); + MEDCouplingAutoRefCountObjectPtr tmp(elt2->getNodalConnectivity()->deepCpy()); + elt2->setConnectivity(tmp,elt2->getNodalConnectivityIndex()); + elt2->shiftNodeNumbersInConn(nbRep*elt1->getNumberOfNodes()); + elt1->setCoords(elt->getCoords()); elt2->setCoords(elt->getCoords()); + std::vector elts(3); + elts[0]=elt; elts[1]=elt1; elts[2]=elt2; + elt=MEDCouplingUMesh::MergeUMeshesOnSameCoords(elts); + elt->setName(getName()); + } + // + o2ns[ii]=elt->sortCellsInMEDFileFrmt(); + ret->setMeshAtLevel(lev,elt); + } + MEDCouplingAutoRefCountObjectPtr endLev(getMeshAtLevel(levs.back())),endLev2; + endLev=endLev->clone(false); endLev->setCoords(coords); + MEDCouplingAutoRefCountObjectPtr tmp(endLev->getNodalConnectivity()->deepCpy()); + endLev2=endLev->clone(false); endLev2->setConnectivity(tmp,endLev->getNodalConnectivityIndex()); + endLev2->shiftNodeNumbersInConn(nbRep*getNumberOfNodes()); + endLev=MEDCouplingUMesh::MergeUMeshesOnSameCoords(endLev,endLev2); + o2ns[levs.size()]=endLev->sortCellsInMEDFileFrmt(); + endLev->setName(getName()); + ret->setMeshAtLevel(levs.back()-1,endLev); + // + for(std::size_t ii=0;ii!=zeList.size();ii++) + { + int lev(levs[ii]); + std::vector< MEDCouplingAutoRefCountObjectPtr > outGrps; + std::vector< const DataArrayInt * > outGrps2; + if(lev<=-1) + { + for(std::vector::const_iterator grp=grps.begin();grp!=grps.end();grp++) + { + MEDCouplingAutoRefCountObjectPtr grpArr(getGroupArr(lev+1,*grp)); + if(!grpArr->empty()) + { + MEDCouplingAutoRefCountObjectPtr grpArr1(grpArr->deepCpy()),grpArr2(grpArr->deepCpy()); + int offset0(zeList[ii]->getNumberOfCells()); + int offset1(offset0+getNumberOfCellsAtLevel(lev+1)); + grpArr1->applyLin(1,offset0); grpArr2->applyLin(1,offset1); + std::ostringstream oss; oss << grpArr2->getName() << "_top"; + grpArr2->setName(oss.str()); + grpArr1->transformWithIndArr(o2ns[ii]->begin(),o2ns[ii]->end()); + grpArr2->transformWithIndArr(o2ns[ii]->begin(),o2ns[ii]->end()); + outGrps.push_back(grpArr1); outGrps.push_back(grpArr2); + outGrps2.push_back(grpArr1); outGrps2.push_back(grpArr2); + } + } + } + // + for(std::vector::const_iterator grp=grps.begin();grp!=grps.end();grp++) + { + MEDCouplingAutoRefCountObjectPtr grpArr(getGroupArr(lev,*grp)); + if(!grpArr->empty()) + { + int nbCellsB4Extrusion(getNumberOfCellsAtLevel(lev)); + std::vector< MEDCouplingAutoRefCountObjectPtr > grpArrs(nbRep); + std::vector< const DataArrayInt *> grpArrs2(nbRep); + for(int iii=0;iiideepCpy(); grpArrs[iii]->applyLin(1,iii*nbCellsB4Extrusion); + grpArrs2[iii]=grpArrs[iii]; + } + MEDCouplingAutoRefCountObjectPtr grpArrExt(DataArrayInt::Aggregate(grpArrs2)); + grpArrExt->transformWithIndArr(o2ns[ii]->begin(),o2ns[ii]->end()); + std::ostringstream grpName; grpName << *grp << "_extruded"; + grpArrExt->setName(grpName.str()); + outGrps.push_back(grpArrExt); + outGrps2.push_back(grpArrExt); + } + } + ret->setGroupsAtLevel(lev,outGrps2); + } + std::vector< MEDCouplingAutoRefCountObjectPtr > outGrps; + std::vector< const DataArrayInt * > outGrps2; + for(std::vector::const_iterator grp=grps.begin();grp!=grps.end();grp++) + { + MEDCouplingAutoRefCountObjectPtr grpArr1(getGroupArr(levs.back(),*grp)); + if(grpArr1->empty()) + continue; + MEDCouplingAutoRefCountObjectPtr grpArr2(grpArr1->deepCpy()); + std::ostringstream grpName; grpName << *grp << "_top"; + grpArr2->setName(grpName.str()); + grpArr2->applyLin(1,getNumberOfCellsAtLevel(levs.back())); + outGrps.push_back(grpArr1); outGrps.push_back(grpArr2); + outGrps2.push_back(grpArr1); outGrps2.push_back(grpArr2); + } + ret->setGroupsAtLevel(levs.back()-1,outGrps2); + return ret.retn(); +} + +/*! + * This method converts all linear cells in \a this into quadratic cells (following the \a conversionType policy). + * All the cells converted are put in the returned instance. This method applies all the groups and families in \a this to returned instance. + * Groups on nodes and families on nodes are copied directly to the returned instance without transformation. + * + * \param [in] conversionType - conversionType specifies the type of conversion expected. Only 0 (default) and 1 are supported presently. 0 those that creates the 'most' simple + * corresponding quadratic cells. 1 is those creating the 'most' complex. + * \param [in] eps - detection threshold for coordinates. + * \return A new instance that is the result of the conversion. The caller has the ownership of this returned instance. + * + * \sa MEDCouplingUMesh::convertLinearCellsToQuadratic , quadraticToLinear + */ +MEDFileUMesh *MEDFileUMesh::linearToQuadratic(int conversionType, double eps) const +{ + MEDCouplingAutoRefCountObjectPtr ret(MEDFileUMesh::New()); + int initialNbNodes(getNumberOfNodes()); + MEDCouplingAutoRefCountObjectPtr m0Tmp(getMeshAtLevel(0)); + MEDCouplingAutoRefCountObjectPtr m0(dynamic_cast(m0Tmp->deepCpy())); + { + MEDCouplingAutoRefCountObjectPtr notUsed(m0->convertLinearCellsToQuadratic(conversionType)); + } + DataArrayDouble *zeCoords(m0->getCoords()); + ret->setMeshAtLevel(0,m0); + std::vector levs(getNonEmptyLevels()); + const DataArrayInt *famField(getFamilyFieldAtLevel(0)); + if(famField) + { + MEDCouplingAutoRefCountObjectPtr famFieldCpy(famField->deepCpy()); + ret->setFamilyFieldArr(0,famFieldCpy); + } + famField=getFamilyFieldAtLevel(1); + if(famField) + { + MEDCouplingAutoRefCountObjectPtr fam(DataArrayInt::New()); fam->alloc(zeCoords->getNumberOfTuples(),1); + fam->fillWithZero(); + fam->setPartOfValues1(famField,0,initialNbNodes,1,0,1,1); + ret->setFamilyFieldArr(1,fam); + } + ret->copyFamGrpMapsFrom(*this); + MEDCouplingAutoRefCountObjectPtr partZeCoords(zeCoords->selectByTupleId2(initialNbNodes,zeCoords->getNumberOfTuples(),1)); + for(std::vector::const_iterator lev=levs.begin();lev!=levs.end();lev++) + { + if(*lev==0) + continue; + MEDCouplingAutoRefCountObjectPtr m1Tmp(getMeshAtLevel(*lev)); + MEDCouplingAutoRefCountObjectPtr m1(dynamic_cast(m1Tmp->deepCpy())); + { + MEDCouplingAutoRefCountObjectPtr notUsed(m1->convertLinearCellsToQuadratic(conversionType)); + } + MEDCouplingAutoRefCountObjectPtr m1Coords(m1->getCoords()->selectByTupleId2(initialNbNodes,m1->getNumberOfNodes(),1)); + DataArrayInt *b(0); + bool a(partZeCoords->areIncludedInMe(m1Coords,eps,b)); + MEDCouplingAutoRefCountObjectPtr bSafe(b); + if(!a) + { + std::ostringstream oss; oss << "MEDFileUMesh::linearCellsToQuadratic : for level " << *lev << " problem to identify nodes generated !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + b->applyLin(1,initialNbNodes); + MEDCouplingAutoRefCountObjectPtr l0(DataArrayInt::New()); l0->alloc(initialNbNodes,1); l0->iota(); + std::vector v(2); v[0]=l0; v[1]=b; + MEDCouplingAutoRefCountObjectPtr renum(DataArrayInt::Aggregate(v)); + m1->renumberNodesInConn(renum->begin()); + m1->setCoords(zeCoords); + ret->setMeshAtLevel(*lev,m1); + famField=getFamilyFieldAtLevel(*lev); + if(famField) + { + MEDCouplingAutoRefCountObjectPtr famFieldCpy(famField->deepCpy()); + ret->setFamilyFieldArr(*lev,famFieldCpy); + } } return ret.retn(); } +/*! + * This method converts all quadratic cells in \a this into linear cells. + * All the cells converted are put in the returned instance. This method applies all the groups and families in \a this to returned instance. + * Groups on nodes and families on nodes are copied directly to the returned instance without transformation. + * + * \param [in] eps - detection threshold for coordinates. + * \return A new instance that is the result of the conversion. The caller has the ownership of this returned instance. + * + * \sa MEDCouplingUMesh::convertLinearCellsToQuadratic , linearToQuadratic + */ +MEDFileUMesh *MEDFileUMesh::quadraticToLinear(double eps) const +{ + MEDCouplingAutoRefCountObjectPtr ret(MEDFileUMesh::New()); + MEDCouplingAutoRefCountObjectPtr m0Tmp(getMeshAtLevel(0)); + MEDCouplingAutoRefCountObjectPtr m0(dynamic_cast(m0Tmp->deepCpy())); + m0->convertQuadraticCellsToLinear(); + m0->zipCoords(); + DataArrayDouble *zeCoords(m0->getCoords()); + ret->setMeshAtLevel(0,m0); + std::vector levs(getNonEmptyLevels()); + const DataArrayInt *famField(getFamilyFieldAtLevel(0)); + if(famField) + { + MEDCouplingAutoRefCountObjectPtr famFieldCpy(famField->deepCpy()); + ret->setFamilyFieldArr(0,famFieldCpy); + } + famField=getFamilyFieldAtLevel(1); + if(famField) + { + MEDCouplingAutoRefCountObjectPtr fam(famField->selectByTupleId2(0,zeCoords->getNumberOfTuples(),1)); + ret->setFamilyFieldArr(1,fam); + } + ret->copyFamGrpMapsFrom(*this); + for(std::vector::const_iterator lev=levs.begin();lev!=levs.end();lev++) + { + if(*lev==0) + continue; + MEDCouplingAutoRefCountObjectPtr m1Tmp(getMeshAtLevel(*lev)); + MEDCouplingAutoRefCountObjectPtr m1(dynamic_cast(m1Tmp->deepCpy())); + m1->convertQuadraticCellsToLinear(); + m1->zipCoords(); + DataArrayInt *b(0); + bool a(zeCoords->areIncludedInMe(m1->getCoords(),eps,b)); + MEDCouplingAutoRefCountObjectPtr bSafe(b); + if(!a) + { + std::ostringstream oss; oss << "MEDFileUMesh::quadraticToLinear : for level " << *lev << " problem to identify nodes generated !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + m1->renumberNodesInConn(b->begin()); + m1->setCoords(zeCoords); + ret->setMeshAtLevel(*lev,m1); + famField=getFamilyFieldAtLevel(*lev); + if(famField) + { + MEDCouplingAutoRefCountObjectPtr famFieldCpy(famField->deepCpy()); + ret->setFamilyFieldArr(*lev,famFieldCpy); + } + } + return ret.retn(); +} + +void MEDFileUMesh::serialize(std::vector& tinyDouble, std::vector& tinyInt, std::vector& tinyStr, std::vector< MEDCouplingAutoRefCountObjectPtr >& bigArraysI, MEDCouplingAutoRefCountObjectPtr& bigArrayD) +{ + clearNonDiscrAttributes(); + forceComputationOfParts(); + tinyDouble.clear(); tinyInt.clear(); tinyStr.clear(); bigArraysI.clear(); bigArrayD=0; + std::vector layer0; + layer0.push_back(_order); //0 i + layer0.push_back(_iteration);//1 i + layer0.push_back(getSpaceDimension());//2 i + tinyDouble.push_back(_time);//0 d + tinyStr.push_back(_name);//0 s + tinyStr.push_back(_desc_name);//1 s + for(int i=0;igetInfoOnComponent(i)); + layer0.push_back((int)_families.size());//3 i <- key info aa layer#0 + for(std::map::const_iterator it=_families.begin();it!=_families.end();it++) + { + tinyStr.push_back((*it).first); + layer0.push_back((*it).second); + } + layer0.push_back((int)_groups.size());//3+aa i <- key info bb layer#0 + for(std::map >::const_iterator it0=_groups.begin();it0!=_groups.end();it0++) + { + layer0.push_back((int)(*it0).second.size()); + tinyStr.push_back((*it0).first); + for(std::vector::const_iterator it1=((*it0).second).begin();it1!=((*it0).second).end();it1++) + tinyStr.push_back(*it1); + } + // sizeof(layer0)==3+aa+1+bb layer#0 + bigArrayD=_coords;// 0 bd + bigArraysI.push_back(_fam_coords);// 0 bi + bigArraysI.push_back(_num_coords);// 1 bi + const PartDefinition *pd(_part_coords); + if(!pd) + layer0.push_back(-1); + else + { + std::vector tmp0; + pd->serialize(tmp0,bigArraysI); + tinyInt.push_back(tmp0.size()); + tinyInt.insert(tinyInt.end(),tmp0.begin(),tmp0.end()); + } + // + std::vector layer1; + std::vector levs(getNonEmptyLevels()); + layer1.push_back((int)levs.size());// 0 i <- key + layer1.insert(layer1.end(),levs.begin(),levs.end()); + for(std::vector::const_iterator it=levs.begin();it!=levs.end();it++) + { + const MEDFileUMeshSplitL1 *lev(getMeshAtLevSafe(*it)); + lev->serialize(layer1,bigArraysI); + } + // put layers all together. + tinyInt.push_back(layer0.size()); + tinyInt.insert(tinyInt.end(),layer0.begin(),layer0.end()); + tinyInt.push_back(layer1.size()); + tinyInt.insert(tinyInt.end(),layer1.begin(),layer1.end()); +} + +void MEDFileUMesh::unserialize(std::vector& tinyDouble, std::vector& tinyInt, std::vector& tinyStr, + std::vector< MEDCouplingAutoRefCountObjectPtr >& bigArraysI, MEDCouplingAutoRefCountObjectPtr& bigArrayD) +{ + int sz0(tinyInt[0]); + std::vector layer0(tinyInt.begin()+1,tinyInt.begin()+1+sz0); + int sz1(tinyInt[sz0+1]); + std::vector layer1(tinyInt.begin()+2+sz0,tinyInt.begin()+2+sz0+sz1); + // + std::reverse(layer0.begin(),layer0.end()); + std::reverse(layer1.begin(),layer1.end()); + std::reverse(tinyDouble.begin(),tinyDouble.end()); + std::reverse(tinyStr.begin(),tinyStr.end()); + std::reverse(bigArraysI.begin(),bigArraysI.end()); + // + _order=layer0.back(); layer0.pop_back(); + _iteration=layer0.back(); layer0.pop_back(); + int spaceDim(layer0.back()); layer0.pop_back(); + _time=tinyDouble.back(); tinyDouble.pop_back(); + _name=tinyStr.back(); tinyStr.pop_back(); + _desc_name=tinyStr.back(); tinyStr.pop_back(); + _coords=bigArrayD; _coords->rearrange(spaceDim); + for(int i=0;isetInfoOnComponent(i,tinyStr.back()); + tinyStr.pop_back(); + } + int nbOfFams(layer0.back()); layer0.pop_back(); + _families.clear(); + for(int i=0;i fams(nbOfFamsOnGrp); + for(int j=0;j tmp0(layer0.begin(),layer0.begin()+isPd); + layer0.erase(layer0.begin(),layer0.begin()+isPd); + _part_coords=PartDefinition::Unserialize(tmp0,bigArraysI); + } + if(!layer0.empty()) + throw INTERP_KERNEL::Exception("MEDFileUMesh::unserialize : something wrong during unserialization #1 !"); + // + int nbLevs(layer1.back()); layer1.pop_back(); + std::vector levs(layer1.rbegin(),layer1.rbegin()+nbLevs); layer1.erase(layer1.end()-nbLevs,layer1.end()); + _ms.clear(); + int maxLev(-(*std::min_element(levs.begin(),levs.end()))); + _ms.resize(maxLev+1); + for(int i=0;igetName() == "". @@ -3559,8 +4089,13 @@ void MEDFileUMesh::addNodeGroup(const DataArrayInt *ids) /*! * Adds a group of nodes/cells/faces/edges to \a this mesh. + * * \param [in] ids - a DataArrayInt providing ids and a name of the group to add. * The ids should be sorted and different each other (MED file norm). + * + * \warning this method can alter default "FAMILLE_ZERO" family. + * For users sensitive to this a call to MEDFileMesh::rearrangeFamilies will be necessary after addGroup session. + * * \throw If the node coordinates array is not set. * \throw If \a ids == \c NULL. * \throw If \a ids->getName() == "". @@ -3933,7 +4468,7 @@ void MEDFileUMesh::setFamilyFieldArr(int meshDimRelToMaxExt, DataArrayInt *famAr throw INTERP_KERNEL::Exception("MEDFileUMesh::setFamilyFieldArr : Dimension request is invalid (>1) !"); int traducedRk=-meshDimRelToMaxExt; if(traducedRk>=(int)_ms.size()) - throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !"); + throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !"); if((MEDFileUMeshSplitL1 *)_ms[traducedRk]==0) throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !"); return _ms[traducedRk]->setFamilyArr(famArr); @@ -3969,7 +4504,7 @@ void MEDFileUMesh::setRenumFieldArr(int meshDimRelToMaxExt, DataArrayInt *renumA throw INTERP_KERNEL::Exception("MEDFileUMesh::setRenumArr : Dimension request is invalid (>1) !"); int traducedRk=-meshDimRelToMaxExt; if(traducedRk>=(int)_ms.size()) - throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !"); + throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !"); if((MEDFileUMeshSplitL1 *)_ms[traducedRk]==0) throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !"); return _ms[traducedRk]->setRenumArr(renumArr); @@ -4003,7 +4538,7 @@ void MEDFileUMesh::setNameFieldAtLevel(int meshDimRelToMaxExt, DataArrayAsciiCha throw INTERP_KERNEL::Exception("MEDFileUMesh::setNameFieldAtLevel : Dimension request is invalid (>1) !"); int traducedRk=-meshDimRelToMaxExt; if(traducedRk>=(int)_ms.size()) - throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !"); + throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !"); if((MEDFileUMeshSplitL1 *)_ms[traducedRk]==0) throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !"); return _ms[traducedRk]->setNameArr(nameArr);