X-Git-Url: http://git.salome-platform.org/gitweb/?a=blobdiff_plain;f=src%2FMEDCoupling%2FMEDCouplingUMesh.hxx;h=c09784c41691ae608ee484f895181245e9640325;hb=4643866bcc351da857d08e9abce42aa58b6d6309;hp=ed8dd7f394a68fc8f60acc7dfd77ec161256556c;hpb=cf79e545e3fde0c03e64fb926376e15f677cacb4;p=tools%2Fmedcoupling.git diff --git a/src/MEDCoupling/MEDCouplingUMesh.hxx b/src/MEDCoupling/MEDCouplingUMesh.hxx index ed8dd7f39..c09784c41 100644 --- a/src/MEDCoupling/MEDCouplingUMesh.hxx +++ b/src/MEDCoupling/MEDCouplingUMesh.hxx @@ -1,4 +1,4 @@ -// Copyright (C) 2007-2015 CEA/DEN, EDF R&D +// Copyright (C) 2007-2020 CEA/DEN, EDF R&D // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public @@ -18,8 +18,7 @@ // // Author : Anthony Geay (CEA/DEN) -#ifndef __PARAMEDMEM_MEDCOUPLINGUMESH_HXX__ -#define __PARAMEDMEM_MEDCOUPLINGUMESH_HXX__ +#pragma once #include "MEDCoupling.hxx" #include "MEDCouplingPointSet.hxx" @@ -29,7 +28,7 @@ #include -namespace ParaMEDMEM +namespace MEDCoupling { class MEDCouplingUMeshCellByTypeEntry; class MEDCouplingUMeshCellIterator; @@ -42,10 +41,11 @@ namespace ParaMEDMEM public: MEDCOUPLING_EXPORT static MEDCouplingUMesh *New(); MEDCOUPLING_EXPORT static MEDCouplingUMesh *New(const std::string& meshName, int meshDim); + MEDCOUPLING_EXPORT std::string getClassName() const override { return std::string("MEDCouplingUMesh"); } // Copy methods - MEDCOUPLING_EXPORT MEDCouplingUMesh *deepCpy() const;; + MEDCOUPLING_EXPORT MEDCouplingUMesh *deepCopy() const; MEDCOUPLING_EXPORT MEDCouplingUMesh *clone(bool recDeepCpy) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *deepCpyConnectivityOnly() const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *deepCopyConnectivityOnly() const; MEDCOUPLING_EXPORT void shallowCopyConnectivityFrom(const MEDCouplingPointSet *other); MEDCOUPLING_EXPORT void updateTime() const; @@ -55,121 +55,128 @@ namespace ParaMEDMEM MEDCOUPLING_EXPORT bool isEqualIfNotWhy(const MEDCouplingMesh *other, double prec, std::string& reason) const; MEDCOUPLING_EXPORT bool isEqualWithoutConsideringStr(const MEDCouplingMesh *other, double prec) const; MEDCOUPLING_EXPORT void checkFastEquivalWith(const MEDCouplingMesh *other, double prec) const; - MEDCOUPLING_EXPORT void checkCoherency() const; - MEDCOUPLING_EXPORT void checkCoherency1(double eps=1e-12) const; + MEDCOUPLING_EXPORT void checkConsistencyLight() const; + MEDCOUPLING_EXPORT void checkConsistency(double eps=1e-12) const; MEDCOUPLING_EXPORT void setMeshDimension(int meshDim); - MEDCOUPLING_EXPORT void allocateCells(int nbOfCells=0); - MEDCOUPLING_EXPORT void insertNextCell(INTERP_KERNEL::NormalizedCellType type, int size, const int *nodalConnOfCell); + MEDCOUPLING_EXPORT void allocateCells(mcIdType nbOfCells=0); + MEDCOUPLING_EXPORT void insertNextCell(INTERP_KERNEL::NormalizedCellType type, mcIdType size, const mcIdType *nodalConnOfCell); MEDCOUPLING_EXPORT void finishInsertingCells(); MEDCOUPLING_EXPORT MEDCouplingUMeshCellIterator *cellIterator(); MEDCOUPLING_EXPORT MEDCouplingUMeshCellByTypeEntry *cellsByType(); MEDCOUPLING_EXPORT std::set getAllGeoTypes() const; MEDCOUPLING_EXPORT std::vector getAllGeoTypesSorted() const; - MEDCOUPLING_EXPORT std::set getTypesOfPart(const int *begin, const int *end) const; - MEDCOUPLING_EXPORT void setConnectivity(DataArrayInt *conn, DataArrayInt *connIndex, bool isComputingTypes=true); - MEDCOUPLING_EXPORT const DataArrayInt *getNodalConnectivity() const { return _nodal_connec; } - MEDCOUPLING_EXPORT const DataArrayInt *getNodalConnectivityIndex() const { return _nodal_connec_index; } - MEDCOUPLING_EXPORT DataArrayInt *getNodalConnectivity() { return _nodal_connec; } - MEDCOUPLING_EXPORT DataArrayInt *getNodalConnectivityIndex() { return _nodal_connec_index; } - MEDCOUPLING_EXPORT INTERP_KERNEL::NormalizedCellType getTypeOfCell(int cellId) const; - MEDCOUPLING_EXPORT DataArrayInt *giveCellsWithType(INTERP_KERNEL::NormalizedCellType type) const; - MEDCOUPLING_EXPORT int getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const; - MEDCOUPLING_EXPORT void getNodeIdsOfCell(int cellId, std::vector& conn) const; + MEDCOUPLING_EXPORT std::set getTypesOfPart(const mcIdType *begin, const mcIdType *end) const; + MEDCOUPLING_EXPORT void setConnectivity(DataArrayIdType *conn, DataArrayIdType *connIndex, bool isComputingTypes=true); + MEDCOUPLING_EXPORT const DataArrayIdType *getNodalConnectivity() const { return _nodal_connec; } + MEDCOUPLING_EXPORT const DataArrayIdType *getNodalConnectivityIndex() const { return _nodal_connec_index; } + MEDCOUPLING_EXPORT DataArrayIdType *getNodalConnectivity() { return _nodal_connec; } + MEDCOUPLING_EXPORT DataArrayIdType *getNodalConnectivityIndex() { return _nodal_connec_index; } + MEDCOUPLING_EXPORT INTERP_KERNEL::NormalizedCellType getTypeOfCell(mcIdType cellId) const; + MEDCOUPLING_EXPORT DataArrayIdType *giveCellsWithType(INTERP_KERNEL::NormalizedCellType type) const; + MEDCOUPLING_EXPORT mcIdType getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const; + MEDCOUPLING_EXPORT void getNodeIdsOfCell(mcIdType cellId, std::vector& conn) const; MEDCOUPLING_EXPORT std::string simpleRepr() const; MEDCOUPLING_EXPORT std::string advancedRepr() const; MEDCOUPLING_EXPORT std::string cppRepr() const; MEDCOUPLING_EXPORT std::string reprConnectivityOfThis() const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *buildSetInstanceFromThis(int spaceDim) const; - MEDCOUPLING_EXPORT int getNumberOfNodesInCell(int cellId) const; - MEDCOUPLING_EXPORT int getNumberOfCells() const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *buildSetInstanceFromThis(std::size_t spaceDim) const; + MEDCOUPLING_EXPORT mcIdType getNumberOfNodesInCell(mcIdType cellId) const; + MEDCOUPLING_EXPORT mcIdType getNumberOfCells() const; MEDCOUPLING_EXPORT int getMeshDimension() const; - MEDCOUPLING_EXPORT int getMeshLength() const; + MEDCOUPLING_EXPORT mcIdType getNodalConnectivityArrayLen() const; MEDCOUPLING_EXPORT void computeTypes(); //! size of returned tinyInfo must be always the same. - MEDCOUPLING_EXPORT void getTinySerializationInformation(std::vector& tinyInfoD, std::vector& tinyInfo, std::vector& littleStrings) const; - MEDCOUPLING_EXPORT bool isEmptyMesh(const std::vector& tinyInfo) const; - MEDCOUPLING_EXPORT void resizeForUnserialization(const std::vector& tinyInfo, DataArrayInt *a1, DataArrayDouble *a2, std::vector& littleStrings) const; - MEDCOUPLING_EXPORT void serialize(DataArrayInt *&a1, DataArrayDouble *&a2) const; - MEDCOUPLING_EXPORT void unserialization(const std::vector& tinyInfoD, const std::vector& tinyInfo, const DataArrayInt *a1, DataArrayDouble *a2, const std::vector& littleStrings); + MEDCOUPLING_EXPORT void getTinySerializationInformation(std::vector& tinyInfoD, std::vector& tinyInfo, std::vector& littleStrings) const; + MEDCOUPLING_EXPORT bool isEmptyMesh(const std::vector& tinyInfo) const; + MEDCOUPLING_EXPORT void resizeForUnserialization(const std::vector& tinyInfo, DataArrayIdType *a1, DataArrayDouble *a2, std::vector& littleStrings) const; + MEDCOUPLING_EXPORT void serialize(DataArrayIdType *&a1, DataArrayDouble *&a2) const; + MEDCOUPLING_EXPORT void unserialization(const std::vector& tinyInfoD, const std::vector& tinyInfo, const DataArrayIdType *a1, DataArrayDouble *a2, const std::vector& littleStrings); MEDCOUPLING_EXPORT std::string getVTKDataSetType() const; MEDCOUPLING_EXPORT std::string getVTKFileExtension() const; MEDCOUPLING_EXPORT void writeVTKLL(std::ostream& ofs, const std::string& cellData, const std::string& pointData, DataArrayByte *byteData) const; MEDCOUPLING_EXPORT void reprQuickOverview(std::ostream& stream) const; //tools - MEDCOUPLING_EXPORT static int AreCellsEqual(const int *conn, const int *connI, int cell1, int cell2, int compType); - MEDCOUPLING_EXPORT static int AreCellsEqual0(const int *conn, const int *connI, int cell1, int cell2); - MEDCOUPLING_EXPORT static int AreCellsEqual1(const int *conn, const int *connI, int cell1, int cell2); - MEDCOUPLING_EXPORT static int AreCellsEqual2(const int *conn, const int *connI, int cell1, int cell2); - MEDCOUPLING_EXPORT static int AreCellsEqual3(const int *conn, const int *connI, int cell1, int cell2); - MEDCOUPLING_EXPORT static int AreCellsEqual7(const int *conn, const int *connI, int cell1, int cell2); - MEDCOUPLING_EXPORT void convertToPolyTypes(const int *cellIdsToConvertBg, const int *cellIdsToConvertEnd); + MEDCOUPLING_EXPORT static int AreCellsEqual(const mcIdType *conn, const mcIdType *connI, mcIdType cell1, mcIdType cell2, int compType); + MEDCOUPLING_EXPORT static int AreCellsEqualPolicy0(const mcIdType *conn, const mcIdType *connI, mcIdType cell1, mcIdType cell2); + MEDCOUPLING_EXPORT static int AreCellsEqualPolicy1(const mcIdType *conn, const mcIdType *connI, mcIdType cell1, mcIdType cell2); + MEDCOUPLING_EXPORT static int AreCellsEqualPolicy2(const mcIdType *conn, const mcIdType *connI, mcIdType cell1, mcIdType cell2); + MEDCOUPLING_EXPORT static int AreCellsEqualPolicy2NoType(const mcIdType *conn, const mcIdType *connI, mcIdType cell1, mcIdType cell2); + MEDCOUPLING_EXPORT static int AreCellsEqualPolicy7(const mcIdType *conn, const mcIdType *connI, mcIdType cell1, mcIdType cell2); + MEDCOUPLING_EXPORT void convertToPolyTypes(const mcIdType *cellIdsToConvertBg, const mcIdType *cellIdsToConvertEnd); MEDCOUPLING_EXPORT void convertAllToPoly(); MEDCOUPLING_EXPORT void convertExtrudedPolyhedra(); MEDCOUPLING_EXPORT bool unPolyze(); MEDCOUPLING_EXPORT void simplifyPolyhedra(double eps); MEDCOUPLING_EXPORT MEDCouplingUMesh *buildSpreadZonesWithPoly() const; - MEDCOUPLING_EXPORT std::vector partitionBySpreadZone() const; - MEDCOUPLING_EXPORT DataArrayInt *computeFetchedNodeIds() const; - MEDCOUPLING_EXPORT DataArrayInt *getNodeIdsInUse(int& nbrOfNodesInUse) const; + MEDCOUPLING_EXPORT std::vector partitionBySpreadZone() const; + MEDCOUPLING_EXPORT DataArrayIdType *computeFetchedNodeIds() const; + MEDCOUPLING_EXPORT DataArrayIdType *getNodeIdsInUse(mcIdType& nbrOfNodesInUse) const; MEDCOUPLING_EXPORT void computeNodeIdsAlg(std::vector& nodeIdsInUse) const; - MEDCOUPLING_EXPORT DataArrayInt *computeNbOfNodesPerCell() const; - MEDCOUPLING_EXPORT DataArrayInt *computeNbOfFacesPerCell() const; - MEDCOUPLING_EXPORT DataArrayInt *computeEffectiveNbOfNodesPerCell() const; - MEDCOUPLING_EXPORT DataArrayInt *zipCoordsTraducer(); - MEDCOUPLING_EXPORT void findCommonCells(int compType, int startCellId, DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr) const; - MEDCOUPLING_EXPORT bool areCellsIncludedIn(const MEDCouplingUMesh *other, int compType, DataArrayInt *& arr) const; - MEDCOUPLING_EXPORT bool areCellsIncludedIn2(const MEDCouplingUMesh *other, DataArrayInt *& arr) const; - MEDCOUPLING_EXPORT void getReverseNodalConnectivity(DataArrayInt *revNodal, DataArrayInt *revNodalIndx) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *explode3DMeshTo1D(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *buildDescendingConnectivity(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *buildDescendingConnectivity2(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const; - MEDCOUPLING_EXPORT void computeNeighborsOfCells(DataArrayInt *&neighbors, DataArrayInt *&neighborsIdx) const; - MEDCOUPLING_EXPORT static void ComputeNeighborsOfCellsAdv(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *revDesc, const DataArrayInt *revDescI, - DataArrayInt *&neighbors, DataArrayInt *&neighborsIdx); - MEDCOUPLING_EXPORT void computeNeighborsOfNodes(DataArrayInt *&neighbors, DataArrayInt *&neighborsIdx) const; + MEDCOUPLING_EXPORT DataArrayIdType *computeNbOfNodesPerCell() const; + MEDCOUPLING_EXPORT DataArrayIdType *computeNbOfFacesPerCell() const; + MEDCOUPLING_EXPORT DataArrayIdType *computeEffectiveNbOfNodesPerCell() const; + MEDCOUPLING_EXPORT DataArrayIdType *zipCoordsTraducer(); + MEDCOUPLING_EXPORT void findCommonCells(int compType, mcIdType startCellId, DataArrayIdType *& commonCellsArr, DataArrayIdType *& commonCellsIArr) const; + MEDCOUPLING_EXPORT bool areCellsIncludedIn(const MEDCouplingUMesh *other, int compType, DataArrayIdType *& arr) const; + MEDCOUPLING_EXPORT bool areCellsIncludedInPolicy7(const MEDCouplingUMesh *other, DataArrayIdType *& arr) const; + MEDCOUPLING_EXPORT void getReverseNodalConnectivity(DataArrayIdType *revNodal, DataArrayIdType *revNodalIndx) const; + MEDCOUPLING_EXPORT MCAuto explodeIntoEdges(MCAuto& desc, MCAuto& descIndex, MCAuto& revDesc, MCAuto& revDescIndx) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *explode3DMeshTo1D(DataArrayIdType *desc, DataArrayIdType *descIndx, DataArrayIdType *revDesc, DataArrayIdType *revDescIndx) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *buildDescendingConnectivity(DataArrayIdType *desc, DataArrayIdType *descIndx, DataArrayIdType *revDesc, DataArrayIdType *revDescIndx) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *buildDescendingConnectivity2(DataArrayIdType *desc, DataArrayIdType *descIndx, DataArrayIdType *revDesc, DataArrayIdType *revDescIndx) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *explodeMeshIntoMicroEdges(DataArrayIdType *desc, DataArrayIdType *descIndx, DataArrayIdType *revDesc, DataArrayIdType *revDescIndx) const; + MEDCOUPLING_EXPORT void computeNeighborsOfCells(DataArrayIdType *&neighbors, DataArrayIdType *&neighborsIdx) const; + MEDCOUPLING_EXPORT void computeCellNeighborhoodFromNodesOne(const DataArrayIdType *nodeNeigh, const DataArrayIdType *nodeNeighI, MCAuto& cellNeigh, MCAuto& cellNeighIndex) const; + MEDCOUPLING_EXPORT static void ComputeNeighborsOfCellsAdv(const DataArrayIdType *desc, const DataArrayIdType *descI, const DataArrayIdType *revDesc, const DataArrayIdType *revDescI, + DataArrayIdType *&neighbors, DataArrayIdType *&neighborsIdx); + MEDCOUPLING_EXPORT void computeNeighborsOfNodes(DataArrayIdType *&neighbors, DataArrayIdType *&neighborsIdx) const; + MEDCOUPLING_EXPORT void computeEnlargedNeighborsOfNodes(MCAuto &neighbors, MCAuto& neighborsIdx) const; MEDCOUPLING_EXPORT MEDCouplingUMesh *mergeMyselfWithOnSameCoords(const MEDCouplingPointSet *other) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *buildPartOfMySelf(const int *begin, const int *end, bool keepCoords=true) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *buildPartOfMySelf2(int start, int end, int step, bool keepCoords=true) const; - MEDCOUPLING_EXPORT void setPartOfMySelf(const int *cellIdsBg, const int *cellIdsEnd, const MEDCouplingUMesh& otherOnSameCoordsThanThis); - MEDCOUPLING_EXPORT void setPartOfMySelf2(int start, int end, int step, const MEDCouplingUMesh& otherOnSameCoordsThanThis); - MEDCOUPLING_EXPORT MEDCouplingUMesh *buildFacePartOfMySelfNode(const int *begin, const int *end, bool fullyIn) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *buildPartOfMySelf(const mcIdType *begin, const mcIdType *end, bool keepCoords=true) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *buildPartOfMySelfSlice(mcIdType start, mcIdType end, mcIdType step, bool keepCoords=true) const; + MEDCOUPLING_EXPORT void setPartOfMySelf(const mcIdType *cellIdsBg, const mcIdType *cellIdsEnd, const MEDCouplingUMesh& otherOnSameCoordsThanThis); + MEDCOUPLING_EXPORT void setPartOfMySelfSlice(mcIdType start, mcIdType end, mcIdType step, const MEDCouplingUMesh& otherOnSameCoordsThanThis); + MEDCOUPLING_EXPORT MEDCouplingUMesh *buildFacePartOfMySelfNode(const mcIdType *begin, const mcIdType *end, bool fullyIn) const; MEDCOUPLING_EXPORT MEDCouplingUMesh *buildUnstructured() const; - MEDCOUPLING_EXPORT DataArrayInt *findBoundaryNodes() const; + MEDCOUPLING_EXPORT DataArrayIdType *findBoundaryNodes() const; MEDCOUPLING_EXPORT MEDCouplingUMesh *buildBoundaryMesh(bool keepCoords) const; - MEDCOUPLING_EXPORT DataArrayInt *findCellIdsOnBoundary() const; - MEDCOUPLING_EXPORT void findCellIdsLyingOn(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayInt *&cellIdsRk0, DataArrayInt *&cellIdsRk1) const; + MEDCOUPLING_EXPORT DataArrayIdType *findCellIdsOnBoundary() const; + MEDCOUPLING_EXPORT void findCellIdsLyingOn(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayIdType *&cellIdsRk0, DataArrayIdType *&cellIdsRk1) const; MEDCOUPLING_EXPORT MEDCouplingUMesh *computeSkin() const; - MEDCOUPLING_EXPORT void findNodesToDuplicate(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayInt *& nodeIdsToDuplicate, - DataArrayInt *& cellIdsNeededToBeRenum, DataArrayInt *& cellIdsNotModified) const; - MEDCOUPLING_EXPORT void duplicateNodes(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd); - MEDCOUPLING_EXPORT void renumberNodesWithOffsetInConn(int offset); - MEDCOUPLING_EXPORT void renumberNodesInConn(const INTERP_KERNEL::HashMap& newNodeNumbersO2N); - MEDCOUPLING_EXPORT void renumberNodesInConn(const int *newNodeNumbersO2N); - MEDCOUPLING_EXPORT void shiftNodeNumbersInConn(int delta); - MEDCOUPLING_EXPORT void duplicateNodesInConn(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd, int offset); - MEDCOUPLING_EXPORT void renumberCells(const int *old2NewBg, bool check=true); - MEDCOUPLING_EXPORT DataArrayInt *getCellsInBoundingBox(const double *bbox, double eps) const; - MEDCOUPLING_EXPORT DataArrayInt *getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps); + MEDCOUPLING_EXPORT void findNodesToDuplicate(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayIdType *& nodeIdsToDuplicate, + DataArrayIdType *& cellIdsNeededToBeRenum, DataArrayIdType *& cellIdsNotModified) const; + MEDCOUPLING_EXPORT void duplicateNodes(const mcIdType *nodeIdsToDuplicateBg, const mcIdType *nodeIdsToDuplicateEnd); + MEDCOUPLING_EXPORT void renumberNodesWithOffsetInConn(mcIdType offset); + MEDCOUPLING_EXPORT void renumberNodesInConn(const INTERP_KERNEL::HashMap& newNodeNumbersO2N); + MEDCOUPLING_EXPORT void renumberNodesInConn(const mcIdType *newNodeNumbersO2N); + MEDCOUPLING_EXPORT void renumberNodesInConn(const std::map& newNodeNumbersO2N) override; + MEDCOUPLING_EXPORT void shiftNodeNumbersInConn(mcIdType delta); + MEDCOUPLING_EXPORT void duplicateNodesInConn(const mcIdType *nodeIdsToDuplicateBg, const mcIdType *nodeIdsToDuplicateEnd, mcIdType offset); + MEDCOUPLING_EXPORT void renumberCells(const mcIdType *old2NewBg, bool check=true); + MEDCOUPLING_EXPORT DataArrayIdType *getCellsInBoundingBox(const double *bbox, double eps) const; + MEDCOUPLING_EXPORT DataArrayIdType *getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps); MEDCOUPLING_EXPORT MEDCouplingFieldDouble *getMeasureField(bool isAbs) const; - MEDCOUPLING_EXPORT DataArrayDouble *getPartMeasureField(bool isAbs, const int *begin, const int *end) const; + MEDCOUPLING_EXPORT DataArrayDouble *getPartMeasureField(bool isAbs, const mcIdType *begin, const mcIdType *end) const; MEDCOUPLING_EXPORT MEDCouplingFieldDouble *getMeasureFieldOnNode(bool isAbs) const; MEDCOUPLING_EXPORT MEDCouplingFieldDouble *buildOrthogonalField() const; - MEDCOUPLING_EXPORT MEDCouplingFieldDouble *buildPartOrthogonalField(const int *begin, const int *end) const; + MEDCOUPLING_EXPORT MEDCouplingFieldDouble *buildPartOrthogonalField(const mcIdType *begin, const mcIdType *end) const; MEDCOUPLING_EXPORT MEDCouplingFieldDouble *buildDirectionVectorField() const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *buildSlice3D(const double *origin, const double *vec, double eps, DataArrayInt *&cellIds) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *buildSlice3DSurf(const double *origin, const double *vec, double eps, DataArrayInt *&cellIds) const; - MEDCOUPLING_EXPORT DataArrayInt *getCellIdsCrossingPlane(const double *origin, const double *vec, double eps) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *buildSlice3D(const double *origin, const double *vec, double eps, DataArrayIdType *&cellIds) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *buildSlice3DSurf(const double *origin, const double *vec, double eps, DataArrayIdType *&cellIds) const; + MEDCOUPLING_EXPORT MCAuto clipSingle3DCellByPlane(const double origin[3], const double vec[3], double eps) const; + MEDCOUPLING_EXPORT DataArrayIdType *getCellIdsCrossingPlane(const double *origin, const double *vec, double eps) const; MEDCOUPLING_EXPORT bool isContiguous1D() const; MEDCOUPLING_EXPORT void project1D(const double *pt, const double *v, double eps, double *res) const; - MEDCOUPLING_EXPORT double distanceToPoint(const double *ptBg, const double *ptEnd, int& cellId) const; - MEDCOUPLING_EXPORT DataArrayDouble *distanceToPoints(const DataArrayDouble *pts, DataArrayInt *& cellIds) const; - MEDCOUPLING_EXPORT int getCellContainingPoint(const double *pos, double eps) const; - MEDCOUPLING_EXPORT void getCellsContainingPoint(const double *pos, double eps, std::vector& elts) const; - MEDCOUPLING_EXPORT void getCellsContainingPoints(const double *pos, int nbOfPoints, double eps, MEDCouplingAutoRefCountObjectPtr& elts, MEDCouplingAutoRefCountObjectPtr& eltsIndex) const; - MEDCOUPLING_EXPORT void checkButterflyCells(std::vector& cells, double eps=1e-12) const; - MEDCOUPLING_EXPORT DataArrayInt *convexEnvelop2D(); - MEDCOUPLING_EXPORT DataArrayInt *findAndCorrectBadOriented3DExtrudedCells(); - MEDCOUPLING_EXPORT DataArrayInt *findAndCorrectBadOriented3DCells(); + MEDCOUPLING_EXPORT double distanceToPoint(const double *ptBg, const double *ptEnd, mcIdType& cellId) const; + MEDCOUPLING_EXPORT DataArrayDouble *distanceToPoints(const DataArrayDouble *pts, DataArrayIdType *& cellIds) const; + MEDCOUPLING_EXPORT mcIdType getCellContainingPoint(const double *pos, double eps) const; + MEDCOUPLING_EXPORT void getCellsContainingPoint(const double *pos, double eps, std::vector& elts) const; + MEDCOUPLING_EXPORT void getCellsContainingPoints(const double *pos, mcIdType nbOfPoints, double eps, MCAuto& elts, MCAuto& eltsIndex) const override; + MEDCOUPLING_EXPORT void getCellsContainingPointsLinearPartOnlyOnNonDynType(const double *pos, mcIdType nbOfPoints, double eps, MCAuto& elts, MCAuto& eltsIndex) const override; + MEDCOUPLING_EXPORT void checkButterflyCells(std::vector& cells, double eps=1e-12) const; + MEDCOUPLING_EXPORT DataArrayIdType *convexEnvelop2D(); + MEDCOUPLING_EXPORT DataArrayIdType *findAndCorrectBadOriented3DExtrudedCells(); + MEDCOUPLING_EXPORT DataArrayIdType *findAndCorrectBadOriented3DCells(); MEDCOUPLING_EXPORT DataArrayDouble *getBoundingBoxForBBTree(double arcDetEps=1e-12) const; MEDCOUPLING_EXPORT DataArrayDouble *getBoundingBoxForBBTreeFast() const; MEDCOUPLING_EXPORT DataArrayDouble *getBoundingBoxForBBTree2DQuadratic(double arcDetEps=1e-12) const; @@ -178,18 +185,22 @@ namespace ParaMEDMEM MEDCOUPLING_EXPORT bool isFullyQuadratic() const; MEDCOUPLING_EXPORT bool isPresenceOfQuadratic() const; MEDCOUPLING_EXPORT void convertQuadraticCellsToLinear(); - MEDCOUPLING_EXPORT DataArrayInt *convertLinearCellsToQuadratic(int conversionType=0); + MEDCOUPLING_EXPORT DataArrayIdType *convertLinearCellsToQuadratic(int conversionType=0); MEDCOUPLING_EXPORT void tessellate2D(double eps); - MEDCOUPLING_EXPORT MEDCoupling1SGTUMesh *tetrahedrize(int policy, DataArrayInt *& n2oCells, int& nbOfAdditionalPoints) const; - MEDCOUPLING_EXPORT DataArrayInt *simplexize(int policy); + MEDCOUPLING_EXPORT MEDCoupling1SGTUMesh *tetrahedrize(int policy, DataArrayIdType *& n2oCells, mcIdType& nbOfAdditionalPoints) const; + MEDCOUPLING_EXPORT DataArrayIdType *simplexize(int policy); MEDCOUPLING_EXPORT bool areOnlySimplexCells() const; MEDCOUPLING_EXPORT void convertDegeneratedCells(); - MEDCOUPLING_EXPORT void are2DCellsNotCorrectlyOriented(const double *vec, bool polyOnly, std::vector& cells) const; + MEDCOUPLING_EXPORT DataArrayIdType *convertDegeneratedCellsAndRemoveFlatOnes(); + MEDCOUPLING_EXPORT bool removeDegenerated1DCells(); + MEDCOUPLING_EXPORT void are2DCellsNotCorrectlyOriented(const double *vec, bool polyOnly, std::vector& cells) const; MEDCOUPLING_EXPORT void orientCorrectly2DCells(const double *vec, bool polyOnly); MEDCOUPLING_EXPORT void changeOrientationOfCells(); - MEDCOUPLING_EXPORT void arePolyhedronsNotCorrectlyOriented(std::vector& cells) const; + MEDCOUPLING_EXPORT void arePolyhedronsNotCorrectlyOriented(std::vector& cells) const; MEDCOUPLING_EXPORT void orientCorrectlyPolyhedrons(); + MEDCOUPLING_EXPORT void invertOrientationOfAllCells(); MEDCOUPLING_EXPORT void getFastAveragePlaneOfThis(double *vec, double *pos) const; + MEDCOUPLING_EXPORT void attractSeg3MidPtsAroundNodes(double ratio, const mcIdType *nodeIdsBg, const mcIdType *nodeIdsEnd); //Mesh quality MEDCOUPLING_EXPORT MEDCouplingFieldDouble *getEdgeRatioField() const; MEDCOUPLING_EXPORT MEDCouplingFieldDouble *getAspectRatioField() const; @@ -197,157 +208,162 @@ namespace ParaMEDMEM MEDCOUPLING_EXPORT MEDCouplingFieldDouble *getSkewField() const; MEDCOUPLING_EXPORT MEDCouplingFieldDouble *computeDiameterField() const; //utilities for MED File RW - MEDCOUPLING_EXPORT std::vector getDistributionOfTypes() const; - MEDCOUPLING_EXPORT DataArrayInt *checkTypeConsistencyAndContig(const std::vector& code, const std::vector& idsPerType) const; - MEDCOUPLING_EXPORT void splitProfilePerType(const DataArrayInt *profile, std::vector& code, std::vector& idsInPflPerType, std::vector& idsPerType) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *emulateMEDMEMBDC(const MEDCouplingUMesh *nM1LevMesh, DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *&revDesc, DataArrayInt *&revDescIndx, DataArrayInt *& nM1LevMeshIds, DataArrayInt *&meshnM1Old2New) const; - MEDCOUPLING_EXPORT DataArrayInt *sortCellsInMEDFileFrmt(); + MEDCOUPLING_EXPORT std::vector getDistributionOfTypes() const; + MEDCOUPLING_EXPORT DataArrayIdType *checkTypeConsistencyAndContig(const std::vector& code, const std::vector& idsPerType) const; + MEDCOUPLING_EXPORT void splitProfilePerType(const DataArrayIdType *profile, std::vector& code, std::vector& idsInPflPerType, std::vector& idsPerType, bool smartPflKiller=true) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *emulateMEDMEMBDC(const MEDCouplingUMesh *nM1LevMesh, DataArrayIdType *desc, DataArrayIdType *descIndx, DataArrayIdType *&revDesc, DataArrayIdType *&revDescIndx, DataArrayIdType *& nM1LevMeshIds, DataArrayIdType *&meshnM1Old2New) const; + MEDCOUPLING_EXPORT DataArrayIdType *sortCellsInMEDFileFrmt(); MEDCOUPLING_EXPORT bool checkConsecutiveCellTypes() const; MEDCOUPLING_EXPORT bool checkConsecutiveCellTypesForMEDFileFrmt() const; MEDCOUPLING_EXPORT bool checkConsecutiveCellTypesAndOrder(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const; - MEDCOUPLING_EXPORT DataArrayInt *getLevArrPerCellTypes(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd, DataArrayInt *&nbPerType) const; - MEDCOUPLING_EXPORT DataArrayInt *getRenumArrForMEDFileFrmt() const; - MEDCOUPLING_EXPORT DataArrayInt *getRenumArrForConsecutiveCellTypesSpec(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const; - MEDCOUPLING_EXPORT DataArrayInt *rearrange2ConsecutiveCellTypes(); + MEDCOUPLING_EXPORT DataArrayIdType *getLevArrPerCellTypes(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd, DataArrayIdType *&nbPerType) const; + MEDCOUPLING_EXPORT DataArrayIdType *getRenumArrForMEDFileFrmt() const; + MEDCOUPLING_EXPORT DataArrayIdType *getRenumArrForConsecutiveCellTypesSpec(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const; + MEDCOUPLING_EXPORT DataArrayIdType *rearrange2ConsecutiveCellTypes(); MEDCOUPLING_EXPORT std::vector splitByType() const; MEDCOUPLING_EXPORT MEDCoupling1GTUMesh *convertIntoSingleGeoTypeMesh() const; - MEDCOUPLING_EXPORT DataArrayInt *convertNodalConnectivityToStaticGeoTypeMesh() const; - MEDCOUPLING_EXPORT void convertNodalConnectivityToDynamicGeoTypeMesh(DataArrayInt *&nodalConn, DataArrayInt *&nodalConnIndex) const; + MEDCOUPLING_EXPORT DataArrayIdType *convertNodalConnectivityToStaticGeoTypeMesh() const; + MEDCOUPLING_EXPORT void convertNodalConnectivityToDynamicGeoTypeMesh(DataArrayIdType *&nodalConn, DataArrayIdType *&nodalConnIndex) const; MEDCOUPLING_EXPORT static MEDCouplingUMesh *AggregateSortedByTypeMeshesOnSameCoords(const std::vector& ms, - DataArrayInt *&szOfCellGrpOfSameType, - DataArrayInt *&idInMsOfCellGrpOfSameType); - MEDCOUPLING_EXPORT DataArrayInt *keepCellIdsByType(INTERP_KERNEL::NormalizedCellType type, const int *begin, const int *end) const; - MEDCOUPLING_EXPORT DataArrayInt *convertCellArrayPerGeoType(const DataArrayInt *da) const; - MEDCOUPLING_EXPORT MEDCouplingUMesh *keepSpecifiedCells(INTERP_KERNEL::NormalizedCellType type, const int *idsPerGeoTypeBg, const int *idsPerGeoTypeEnd) const; + DataArrayIdType *&szOfCellGrpOfSameType, + DataArrayIdType *&idInMsOfCellGrpOfSameType); + MEDCOUPLING_EXPORT DataArrayIdType *keepCellIdsByType(INTERP_KERNEL::NormalizedCellType type, const mcIdType *begin, const mcIdType *end) const; + MEDCOUPLING_EXPORT DataArrayIdType *convertCellArrayPerGeoType(const DataArrayIdType *da) const; + MEDCOUPLING_EXPORT MEDCouplingUMesh *keepSpecifiedCells(INTERP_KERNEL::NormalizedCellType type, const mcIdType *idsPerGeoTypeBg, const mcIdType *idsPerGeoTypeEnd) const; MEDCOUPLING_EXPORT std::vector getQuadraticStatus() const; // MEDCOUPLING_EXPORT MEDCouplingMesh *mergeMyselfWith(const MEDCouplingMesh *other) const; - MEDCOUPLING_EXPORT DataArrayDouble *getBarycenterAndOwner() const; + MEDCOUPLING_EXPORT DataArrayDouble *computeCellCenterOfMass() const; + MEDCOUPLING_EXPORT DataArrayDouble *computeCellCenterOfMassWithPrecision(double eps) const; MEDCOUPLING_EXPORT DataArrayDouble *computeIsoBarycenterOfNodesPerCell() const; - MEDCOUPLING_EXPORT DataArrayDouble *getPartBarycenterAndOwner(const int *begin, const int *end) const; + MEDCOUPLING_EXPORT DataArrayDouble *getPartBarycenterAndOwner(const mcIdType *begin, const mcIdType *end) const; MEDCOUPLING_EXPORT DataArrayDouble *computePlaneEquationOf3DFaces() const; - MEDCOUPLING_EXPORT DataArrayInt *conformize2D(double eps); - MEDCOUPLING_EXPORT DataArrayInt *colinearize2D(double eps); - MEDCOUPLING_EXPORT int split2DCells(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *subNodesInSeg, const DataArrayInt *subNodesInSegI, const DataArrayInt *midOpt=0, const DataArrayInt *midOptI=0); + MEDCOUPLING_EXPORT DataArrayIdType *conformize2D(double eps); + MEDCOUPLING_EXPORT DataArrayIdType *colinearize2D(double eps); + MEDCOUPLING_EXPORT DataArrayIdType *colinearizeKeepingConform2D(double eps); + MEDCOUPLING_EXPORT DataArrayIdType *conformize3D(double eps); + MEDCOUPLING_EXPORT mcIdType split2DCells(const DataArrayIdType *desc, const DataArrayIdType *descI, const DataArrayIdType *subNodesInSeg, const DataArrayIdType *subNodesInSegI, const DataArrayIdType *midOpt=0, const DataArrayIdType *midOptI=0); MEDCOUPLING_EXPORT static MEDCouplingUMesh *Build0DMeshFromCoords(DataArrayDouble *da); + MEDCOUPLING_EXPORT static MCAuto Build1DMeshFromCoords(DataArrayDouble *da); MEDCOUPLING_EXPORT static MEDCouplingUMesh *MergeUMeshes(const MEDCouplingUMesh *mesh1, const MEDCouplingUMesh *mesh2); - MEDCOUPLING_EXPORT static MEDCouplingUMesh *MergeUMeshes(std::vector& a); + MEDCOUPLING_EXPORT static MEDCouplingUMesh *MergeUMeshes(const std::vector& a); MEDCOUPLING_EXPORT static MEDCouplingUMesh *MergeUMeshesOnSameCoords(const MEDCouplingUMesh *mesh1, const MEDCouplingUMesh *mesh2); MEDCOUPLING_EXPORT static MEDCouplingUMesh *MergeUMeshesOnSameCoords(const std::vector& meshes); - MEDCOUPLING_EXPORT static MEDCouplingUMesh *FuseUMeshesOnSameCoords(const std::vector& meshes, int compType, std::vector& corr); + MEDCOUPLING_EXPORT static MEDCouplingUMesh *FuseUMeshesOnSameCoords(const std::vector& meshes, int compType, std::vector& corr); MEDCOUPLING_EXPORT static void PutUMeshesOnSameAggregatedCoords(const std::vector& meshes); MEDCOUPLING_EXPORT static void MergeNodesOnUMeshesSharingSameCoords(const std::vector& meshes, double eps); - MEDCOUPLING_EXPORT static bool IsPolygonWellOriented(bool isQuadratic, const double *vec, const int *begin, const int *end, const double *coords); - MEDCOUPLING_EXPORT static bool IsPolyhedronWellOriented(const int *begin, const int *end, const double *coords); - MEDCOUPLING_EXPORT static bool Is3DExtrudedStaticCellWellOriented(const int *begin, const int *end, const double *coords); - MEDCOUPLING_EXPORT static void CorrectExtrudedStaticCell(int *begin, int *end); - MEDCOUPLING_EXPORT static bool IsTetra4WellOriented(const int *begin, const int *end, const double *coords); - MEDCOUPLING_EXPORT static bool IsPyra5WellOriented(const int *begin, const int *end, const double *coords); - MEDCOUPLING_EXPORT static void SimplifyPolyhedronCell(double eps, const DataArrayDouble *coords, const int *begin, const int *end, DataArrayInt *res); - MEDCOUPLING_EXPORT static void ComputeVecAndPtOfFace(double eps, const double *coords, const int *begin, const int *end, double *v, double *p); - MEDCOUPLING_EXPORT static void TryToCorrectPolyhedronOrientation(int *begin, int *end, const double *coords); - MEDCOUPLING_EXPORT static MEDCouplingUMesh *Intersect2DMeshes(const MEDCouplingUMesh *m1, const MEDCouplingUMesh *m2, double eps, DataArrayInt *&cellNb1, DataArrayInt *&cellNb2); + MEDCOUPLING_EXPORT static bool IsPolygonWellOriented(bool isQuadratic, const double *vec, const mcIdType *begin, const mcIdType *end, const double *coords); + MEDCOUPLING_EXPORT static bool IsPolyhedronWellOriented(const mcIdType *begin, const mcIdType *end, const double *coords); + MEDCOUPLING_EXPORT static bool Is3DExtrudedStaticCellWellOriented(const mcIdType *begin, const mcIdType *end, const double *coords); + MEDCOUPLING_EXPORT static void CorrectExtrudedStaticCell(mcIdType *begin, mcIdType *end); + MEDCOUPLING_EXPORT static bool IsTetra4WellOriented(const mcIdType *begin, const mcIdType *end, const double *coords); + MEDCOUPLING_EXPORT static bool IsPyra5WellOriented(const mcIdType *begin, const mcIdType *end, const double *coords); + MEDCOUPLING_EXPORT static void SimplifyPolyhedronCell(double eps, const DataArrayDouble *coords, mcIdType index, DataArrayIdType *res, MEDCouplingUMesh *faces, + DataArrayIdType *E_Fi, DataArrayIdType *E_F, DataArrayIdType *F_Ei, DataArrayIdType *F_E); + MEDCOUPLING_EXPORT static void ComputeVecAndPtOfFace(double eps, const double *coords, const mcIdType *begin, const mcIdType *end, double *v, double *p); + MEDCOUPLING_EXPORT static void TryToCorrectPolyhedronOrientation(mcIdType *begin, mcIdType *end, const double *coords); + MEDCOUPLING_EXPORT static MEDCouplingUMesh *Intersect2DMeshes(const MEDCouplingUMesh *m1, const MEDCouplingUMesh *m2, double eps, DataArrayIdType *&cellNb1, DataArrayIdType *&cellNb2); MEDCOUPLING_EXPORT static void Intersect2DMeshWith1DLine(const MEDCouplingUMesh *mesh2D, const MEDCouplingUMesh *mesh1D, - double eps, MEDCouplingUMesh *&splitMesh2D, MEDCouplingUMesh *&splitMesh1D, DataArrayInt *&cellIdInMesh2D, DataArrayInt *&cellIdInMesh1D); - MEDCOUPLING_EXPORT static bool BuildConvexEnvelopOf2DCellJarvis(const double *coords, const int *nodalConnBg, const int *nodalConnEnd, DataArrayInt *nodalConnecOut); - MEDCOUPLING_EXPORT static bool RemoveIdsFromIndexedArrays(const int *idsToRemoveBg, const int *idsToRemoveEnd, DataArrayInt *arr, DataArrayInt *arrIndx, int offsetForRemoval=0); - MEDCOUPLING_EXPORT static void ExtractFromIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, - DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut); - MEDCOUPLING_EXPORT static void ExtractFromIndexedArrays2(int idsOfSelectStart, int idsOfSelectStop, int idsOfSelectStep, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, - DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut); - MEDCOUPLING_EXPORT static void SetPartOfIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, - const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex, - DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut); - MEDCOUPLING_EXPORT static void SetPartOfIndexedArraysSameIdx(const int *idsOfSelectBg, const int *idsOfSelectEnd, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn, - const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex); - MEDCOUPLING_EXPORT static void SetPartOfIndexedArrays2(int start, int end, int step, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, - const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex, - DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut); - MEDCOUPLING_EXPORT static void SetPartOfIndexedArraysSameIdx2(int start, int end, int step, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn, - const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex); - MEDCOUPLING_EXPORT static DataArrayInt *ComputeSpreadZoneGradually(const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn); - MEDCOUPLING_EXPORT static DataArrayInt *ComputeSpreadZoneGraduallyFromSeed(const int *seedBg, const int *seedEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, int nbOfDepthPeeling, int& nbOfDepthPeelingPerformed); - MEDCOUPLING_EXPORT static void FindCommonCellsAlg(int compType, int startCellId, const DataArrayInt *nodal, const DataArrayInt *nodalI, const DataArrayInt *revNodal, const DataArrayInt *revNodalI, - DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr); - MEDCOUPLING_EXPORT DataArrayInt *buildUnionOf2DMesh() const; - MEDCOUPLING_EXPORT DataArrayInt *buildUnionOf3DMesh() const; - MEDCOUPLING_EXPORT DataArrayInt *orderConsecutiveCells1D() const; - MEDCOUPLING_EXPORT MEDCouplingSkyLineArray *generateGraph() const; - private: + double eps, MEDCouplingUMesh *&splitMesh2D, MEDCouplingUMesh *&splitMesh1D, DataArrayIdType *&cellIdInMesh2D, DataArrayIdType *&cellIdInMesh1D); + MEDCOUPLING_EXPORT static bool BuildConvexEnvelopOf2DCellJarvis(const double *coords, const mcIdType *nodalConnBg, const mcIdType *nodalConnEnd, DataArrayIdType *nodalConnecOut); + MEDCOUPLING_EXPORT static std::vector PartitionBySpreadZone(const DataArrayIdType *arrIn, const DataArrayIdType *arrIndxIn); + MEDCOUPLING_EXPORT static DataArrayIdType *ComputeSpreadZoneGradually(const DataArrayIdType *arrIn, const DataArrayIdType *arrIndxIn); + MEDCOUPLING_EXPORT static DataArrayIdType *ComputeSpreadZoneGraduallyFromSeed(const mcIdType *seedBg, const mcIdType *seedEnd, const DataArrayIdType *arrIn, const DataArrayIdType *arrIndxIn, mcIdType nbOfDepthPeeling, mcIdType& nbOfDepthPeelingPerformed); + MEDCOUPLING_EXPORT static void FindCommonCellsAlg(int compType, mcIdType startCellId, const DataArrayIdType *nodal, const DataArrayIdType *nodalI, const DataArrayIdType *revNodal, const DataArrayIdType *revNodalI, + DataArrayIdType *& commonCellsArr, DataArrayIdType *& commonCellsIArr); + MEDCOUPLING_EXPORT DataArrayIdType *buildUnionOf2DMesh() const; + MEDCOUPLING_EXPORT DataArrayIdType *buildUnionOf3DMesh() const; + MEDCOUPLING_EXPORT DataArrayIdType *orderConsecutiveCells1D() const; + MEDCOUPLING_EXPORT MEDCouplingSkyLineArray* generateGraph() const; + private: // all private methods are impl in MEDCouplingUMesh_internal.cxx + MEDCouplingUMesh(); - MEDCouplingUMesh(const MEDCouplingUMesh& other, bool deepCopy); + MEDCouplingUMesh(const MEDCouplingUMesh& other, bool deepCpy); ~MEDCouplingUMesh(); void checkFullyDefined() const; void checkConnectivityFullyDefined() const; void reprConnectivityOfThisLL(std::ostringstream& stream) const; //tools - DataArrayInt *simplexizePol0(); - DataArrayInt *simplexizePol1(); - DataArrayInt *simplexizePlanarFace5(); - DataArrayInt *simplexizePlanarFace6(); + DataArrayIdType *simplexizePol0(); + DataArrayIdType *simplexizePol1(); + DataArrayIdType *simplexizePlanarFace5(); + DataArrayIdType *simplexizePlanarFace6(); void tessellate2DInternal(double eps); void tessellate2DCurveInternal(double eps); - void subDivide2DMesh(const int *nodeSubdived, const int *nodeIndxSubdived, const int *desc, const int *descIndex); - void fillCellIdsToKeepFromNodeIds(const int *begin, const int *end, bool fullyIn, DataArrayInt *&cellIdsKeptArr) const; - void split3DCurveWithPlane(const double *origin, const double *vec, double eps, std::vector& cut3DCurve); - MEDCouplingUMesh *buildExtrudedMeshFromThisLowLev(int nbOfNodesOf1Lev, bool isQuad) const; + void subDivide2DMesh(const mcIdType *nodeSubdived, const mcIdType *nodeIndxSubdived, const mcIdType *desc, const mcIdType *descIndex); + void fillCellIdsToKeepFromNodeIds(const mcIdType *begin, const mcIdType *end, bool fullyIn, DataArrayIdType *&cellIdsKeptArr) const; + void split3DCurveWithPlane(const double *origin, const double *vec, double eps, std::vector& cut3DCurve); + MEDCouplingUMesh *buildExtrudedMeshFromThisLowLev(mcIdType nbOfNodesOf1Lev, bool isQuad) const; DataArrayDouble *fillExtCoordsUsingTranslation(const MEDCouplingUMesh *mesh1D, bool isQuad) const; DataArrayDouble *fillExtCoordsUsingTranslAndAutoRotation(const MEDCouplingUMesh *mesh1D, bool isQuad) const; DataArrayDouble *fillExtCoordsUsingTranslAndAutoRotation2D(const MEDCouplingUMesh *mesh1D, bool isQuad) const; DataArrayDouble *fillExtCoordsUsingTranslAndAutoRotation3D(const MEDCouplingUMesh *mesh1D, bool isQuad) const; - static bool AreCellsEqualInPool(const std::vector& candidates, int compType, const int *conn, const int *connI, DataArrayInt *result) ; - MEDCouplingUMesh *buildPartOfMySelfKeepCoords(const int *begin, const int *end) const; - MEDCouplingUMesh *buildPartOfMySelfKeepCoords2(int start, int end, int step) const; - DataArrayInt *convertLinearCellsToQuadratic1D0(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set& types) const; - DataArrayInt *convertLinearCellsToQuadratic2DAnd3D0(const MEDCouplingUMesh *m1D, const DataArrayInt *desc, const DataArrayInt *descI, DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set& types) const; - DataArrayInt *convertLinearCellsToQuadratic2D0(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set& types) const; - DataArrayInt *convertLinearCellsToQuadratic2D1(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set& types) const; - DataArrayInt *convertLinearCellsToQuadratic3D0(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set& types) const; - DataArrayInt *convertLinearCellsToQuadratic3D1(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set& types) const; - DataArrayInt *buildUnionOf2DMeshLinear(const MEDCouplingUMesh *skin, const DataArrayInt *n2o) const; - DataArrayInt *buildUnionOf2DMeshQuadratic(const MEDCouplingUMesh *skin, const DataArrayInt *n2o) const; + static bool AreCellsEqualInPool(const std::vector& candidates, int compType, const mcIdType *conn, const mcIdType *connI, DataArrayIdType *result) ; + MEDCouplingUMesh *buildPartOfMySelfKeepCoords(const mcIdType *begin, const mcIdType *end) const; + MEDCouplingUMesh *buildPartOfMySelfKeepCoordsSlice(mcIdType start, mcIdType end, mcIdType step) const; + DataArrayIdType *convertLinearCellsToQuadratic1D0(DataArrayIdType *&conn, DataArrayIdType *&connI, DataArrayDouble *& coords, std::set& types) const; + DataArrayIdType *convertLinearCellsToQuadratic2DAnd3D0(const MEDCouplingUMesh *m1D, const DataArrayIdType *desc, const DataArrayIdType *descI, DataArrayIdType *&conn, DataArrayIdType *&connI, DataArrayDouble *& coords, std::set& types) const; + DataArrayIdType *convertLinearCellsToQuadratic2D0(DataArrayIdType *&conn, DataArrayIdType *&connI, DataArrayDouble *& coords, std::set& types) const; + DataArrayIdType *convertLinearCellsToQuadratic2D1(DataArrayIdType *&conn, DataArrayIdType *&connI, DataArrayDouble *& coords, std::set& types) const; + DataArrayIdType *convertLinearCellsToQuadratic3D0(DataArrayIdType *&conn, DataArrayIdType *&connI, DataArrayDouble *& coords, std::set& types) const; + DataArrayIdType *convertLinearCellsToQuadratic3D1(DataArrayIdType *&conn, DataArrayIdType *&connI, DataArrayDouble *& coords, std::set& types) const; + DataArrayIdType *buildUnionOf2DMeshLinear(const MEDCouplingUMesh *skin, const DataArrayIdType *n2o) const; + DataArrayIdType *buildUnionOf2DMeshQuadratic(const MEDCouplingUMesh *skin, const DataArrayIdType *n2o) const; template - void getCellsContainingPointsAlg(const double *coords, const double *pos, int nbOfPoints, - double eps, MEDCouplingAutoRefCountObjectPtr& elts, MEDCouplingAutoRefCountObjectPtr& eltsIndex) const; + void getCellsContainingPointsAlg(const double *coords, const double *pos, mcIdType nbOfPoints, + double eps, MCAuto& elts, MCAuto& eltsIndex, std::function sensibilityTo2DQuadraticLinearCellsFunc) const; + void getCellsContainingPointsZeAlg(const double *pos, mcIdType nbOfPoints, double eps, + MCAuto& elts, MCAuto& eltsIndex, + std::function sensibilityTo2DQuadraticLinearCellsFunc) const; /// @cond INTERNAL - static MEDCouplingUMesh *MergeUMeshesLL(std::vector& a); - typedef int (*DimM1DescNbrer)(int id, unsigned nb, const INTERP_KERNEL::CellModel& cm, bool compute, const int *conn1, const int *conn2); + static MEDCouplingUMesh *MergeUMeshesLL(const std::vector& a); + typedef mcIdType (*DimM1DescNbrer)(mcIdType id, mcIdType nb, const INTERP_KERNEL::CellModel& cm, bool compute, const mcIdType *conn1, const mcIdType *conn2); template - MEDCouplingUMesh *buildDescendingConnectivityGen(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx, DimM1DescNbrer nbrer) const; - static void DistanceToPoint3DSurfAlg(const double *pt, const int *cellIdsBg, const int *cellIdsEnd, const double *coords, const int *nc, const int *ncI, double& ret0, int& cellId); - static void DistanceToPoint2DCurveAlg(const double *pt, const int *cellIdsBg, const int *cellIdsEnd, const double *coords, const int *nc, const int *ncI, double& ret0, int& cellId); - static DataArrayInt *ComputeSpreadZoneGraduallyFromSeedAlg(std::vector& fetched, const int *seedBg, const int *seedEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, int nbOfDepthPeeling, int& nbOfDepthPeelingPerformed); - static void FillInCompact3DMode(int spaceDim, int nbOfNodesInCell, const int *conn, const double *coo, double *zipFrmt); - static void AppendExtrudedCell(const int *connBg, const int *connEnd, int nbOfNodesPerLev, bool isQuad, std::vector& ret); - static void Intersect1DMeshes(const MEDCouplingUMesh *m1Desc, const MEDCouplingUMesh *m2Desc, double eps, std::vector< std::vector >& intersectEdge1, std::vector< std::vector >& colinear2, std::vector< std::vector >& subDiv2, std::vector& addCoo, std::map& mergedNodes); + MEDCouplingUMesh *buildDescendingConnectivityGen(DataArrayIdType *desc, DataArrayIdType *descIndx, DataArrayIdType *revDesc, DataArrayIdType *revDescIndx, DimM1DescNbrer nbrer) const; + static void DistanceToPoint3DSurfAlg(const double *pt, const mcIdType *cellIdsBg, const mcIdType *cellIdsEnd, const double *coords, const mcIdType *nc, const mcIdType *ncI, double& ret0, mcIdType& cellId); + static void DistanceToPoint2DCurveAlg(const double *pt, const mcIdType *cellIdsBg, const mcIdType *cellIdsEnd, const double *coords, const mcIdType *nc, const mcIdType *ncI, double& ret0, mcIdType& cellId); + static DataArrayIdType *ComputeSpreadZoneGraduallyFromSeedAlg(std::vector& fetched, const mcIdType *seedBg, const mcIdType *seedEnd, const DataArrayIdType *arrIn, const DataArrayIdType *arrIndxIn, mcIdType nbOfDepthPeeling, mcIdType& nbOfDepthPeelingPerformed); + static void FillInCompact3DMode(int spaceDim, mcIdType nbOfNodesInCell, const mcIdType *conn, const double *coo, double *zipFrmt); + static void AppendExtrudedCell(const mcIdType *connBg, const mcIdType *connEnd, mcIdType nbOfNodesPerLev, bool isQuad, std::vector& ret); + static void Intersect1DMeshes(const MEDCouplingUMesh *m1Desc, const MEDCouplingUMesh *m2Desc, double eps, std::vector< std::vector >& intersectEdge1, std::vector< std::vector >& colinear2, std::vector< std::vector >& subDiv2, std::vector& addCoo, std::map& mergedNodes); static void IntersectDescending2DMeshes(const MEDCouplingUMesh *m1, const MEDCouplingUMesh *m2, double eps, - std::vector< std::vector >& intersectEdge1, std::vector< std::vector >& colinear2, std::vector< std::vector >& subDiv2, - MEDCouplingUMesh *& m1Desc, DataArrayInt *&desc1, DataArrayInt *&descIndx1, DataArrayInt *&revDesc1, DataArrayInt *&revDescIndx1, + std::vector< std::vector >& intersectEdge1, std::vector< std::vector >& colinear2, std::vector< std::vector >& subDiv2, + MEDCouplingUMesh *& m1Desc, DataArrayIdType *&desc1, DataArrayIdType *&descIndx1, DataArrayIdType *&revDesc1, DataArrayIdType *&revDescIndx1, std::vector& addCoo, - MEDCouplingUMesh *& m2Desc, DataArrayInt *&desc2, DataArrayInt *&descIndx2, DataArrayInt *&revDesc2, DataArrayInt *&revDescIndx2); - static void BuildIntersectEdges(const MEDCouplingUMesh *m1, const MEDCouplingUMesh *m2, const std::vector& addCoo, const std::vector< std::vector >& subDiv, std::vector< std::vector >& intersectEdge); - static void BuildIntersecting2DCellsFromEdges(double eps, const MEDCouplingUMesh *m1, const int *desc1, const int *descIndx1, const std::vector >& intesctEdges1, const std::vector< std::vector >& colinear2, - const MEDCouplingUMesh *m2, const int *desc2, const int *descIndx2, const std::vector >& intesctEdges2, + MEDCouplingUMesh *& m2Desc, DataArrayIdType *&desc2, DataArrayIdType *&descIndx2, DataArrayIdType *&revDesc2, DataArrayIdType *&revDescIndx2); + static void BuildIntersectEdges(const MEDCouplingUMesh *m1, const MEDCouplingUMesh *m2, const std::vector& addCoo, const std::vector< std::vector >& subDiv, std::vector< std::vector >& intersectEdge); + static void BuildIntersecting2DCellsFromEdges(double eps, const MEDCouplingUMesh *m1, const mcIdType *desc1, const mcIdType *descIndx1, const std::vector >& intesctEdges1, const std::vector< std::vector >& colinear2, + const MEDCouplingUMesh *m2, const mcIdType *desc2, const mcIdType *descIndx2, const std::vector >& intesctEdges2, const std::vector& addCoords, - std::vector& addCoordsQuadratic, std::vector& cr, std::vector& crI, std::vector& cNb1, std::vector& cNb2); - static void AssemblyForSplitFrom3DCurve(const std::vector& cut3DCurve, std::vector& nodesOnPlane, const int *nodal3DSurf, const int *nodalIndx3DSurf, - const int *nodal3DCurve, const int *nodalIndx3DCurve, - const int *desc, const int *descIndx, std::vector< std::pair >& cut3DSurf); - void assemblyForSplitFrom3DSurf(const std::vector< std::pair >& cut3DSurf, - const int *desc, const int *descIndx, DataArrayInt *nodalRes, DataArrayInt *nodalResIndx, DataArrayInt *cellIds) const; - void split2DCellsLinear(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *subNodesInSeg, const DataArrayInt *subNodesInSegI); - int split2DCellsQuadratic(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *subNodesInSeg, const DataArrayInt *subNodesInSegI, const DataArrayInt *mid, const DataArrayInt *midI); - static bool Colinearize2DCell(const double *coords, const int *connBg, const int *connEnd, int offset, DataArrayInt *newConnOfCell, DataArrayDouble *appendedCoords); - static void ComputeAllTypesInternal(std::set& types, const DataArrayInt *nodalConnec, const DataArrayInt *nodalConnecIndex); + std::vector& addCoordsQuadratic, std::vector& cr, std::vector& crI, std::vector& cNb1, std::vector& cNb2); + static void AssemblyForSplitFrom3DCurve(const std::vector& cut3DCurve, std::vector& nodesOnPlane, const mcIdType *nodal3DSurf, const mcIdType *nodalIndx3DSurf, + const mcIdType *nodal3DCurve, const mcIdType *nodalIndx3DCurve, + const mcIdType *desc, const mcIdType *descIndx, std::vector< std::pair >& cut3DSurf); + void assemblyForSplitFrom3DSurf(const std::vector< std::pair >& cut3DSurf, + const mcIdType *desc, const mcIdType *descIndx, DataArrayIdType *nodalRes, DataArrayIdType *nodalResIndx, DataArrayIdType *cellIds) const; + void buildSubCellsFromCut(const std::vector< std::pair >& cut3DSurf, const mcIdType *desc, const mcIdType *descIndx, const double *coords, double eps, std::vector >& res) const; + void split2DCellsLinear(const DataArrayIdType *desc, const DataArrayIdType *descI, const DataArrayIdType *subNodesInSeg, const DataArrayIdType *subNodesInSegI); + mcIdType split2DCellsQuadratic(const DataArrayIdType *desc, const DataArrayIdType *descI, const DataArrayIdType *subNodesInSeg, const DataArrayIdType *subNodesInSegI, const DataArrayIdType *mid, const DataArrayIdType *midI); + static bool Colinearize2DCell(const double *coords, const mcIdType *connBg, const mcIdType *connEnd, mcIdType offset, const std::map& forbiddenPoints, DataArrayIdType *newConnOfCell, DataArrayDouble *appendedCoords); + static void ComputeAllTypesInternal(std::set& types, const DataArrayIdType *nodalConnec, const DataArrayIdType *nodalConnecIndex); + static bool OrderPointsAlongLine(const double * coo, mcIdType startNode, mcIdType endNode, + const mcIdType * c, const mcIdType * cI, const mcIdType *idsBg, const mcIdType *endBg, + std::vector & pointIds, std::vector & hitSegs); + static void ReplaceEdgeInFace(const mcIdType * sIdxConn, const mcIdType * sIdxConnE, mcIdType startNode, mcIdType endNode, + const std::vector& insidePoints, std::vector& modifiedFace); + void attractSeg3MidPtsAroundNodesUnderground(double ratio, const mcIdType *nodeIdsBg, const mcIdType *nodeIdsEnd); + DataArrayIdType *internalColinearize2D(double eps, bool stayConform); + template + void renumberNodesInConnT(const MAPCLS& newNodeNumbersO2N); public: - MEDCOUPLING_EXPORT static DataArrayInt *ComputeRangesFromTypeDistribution(const std::vector& code); - MEDCOUPLING_EXPORT static const int N_MEDMEM_ORDER=24; + MEDCOUPLING_EXPORT static DataArrayIdType *ComputeRangesFromTypeDistribution(const std::vector& code); + MEDCOUPLING_EXPORT static const int N_MEDMEM_ORDER=25; MEDCOUPLING_EXPORT static const INTERP_KERNEL::NormalizedCellType MEDMEM_ORDER[N_MEDMEM_ORDER]; /// @endcond private: int _mesh_dim; - DataArrayInt *_nodal_connec; - DataArrayInt *_nodal_connec_index; + DataArrayIdType *_nodal_connec; + DataArrayIdType *_nodal_connec_index; std::set _types; public: static double EPS_FOR_POLYH_ORIENTATION; @@ -359,15 +375,15 @@ namespace ParaMEDMEM { public: MEDCOUPLING_EXPORT MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh); - MEDCOUPLING_EXPORT MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh, MEDCouplingUMeshCell *itc, int bg, int end); + MEDCOUPLING_EXPORT MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh, MEDCouplingUMeshCell *itc, mcIdType bg, mcIdType end); MEDCOUPLING_EXPORT ~MEDCouplingUMeshCellIterator(); MEDCOUPLING_EXPORT MEDCouplingUMeshCell *nextt(); private: MEDCouplingUMesh *_mesh; MEDCouplingUMeshCell *_cell; bool _own_cell; - int _cell_id; - int _nb_cell; + mcIdType _cell_id; + mcIdType _nb_cell; }; class MEDCouplingUMeshCellByTypeIterator; @@ -385,17 +401,17 @@ namespace ParaMEDMEM class MEDCouplingUMeshCellEntry { public: - MEDCOUPLING_EXPORT MEDCouplingUMeshCellEntry(MEDCouplingUMesh *mesh, INTERP_KERNEL::NormalizedCellType type, MEDCouplingUMeshCell *itc, int bg, int end); + MEDCOUPLING_EXPORT MEDCouplingUMeshCellEntry(MEDCouplingUMesh *mesh, INTERP_KERNEL::NormalizedCellType type, MEDCouplingUMeshCell *itc, mcIdType bg, mcIdType end); MEDCOUPLING_EXPORT ~MEDCouplingUMeshCellEntry(); MEDCOUPLING_EXPORT INTERP_KERNEL::NormalizedCellType getType() const; - MEDCOUPLING_EXPORT int getNumberOfElems() const; + MEDCOUPLING_EXPORT mcIdType getNumberOfElems() const; MEDCOUPLING_EXPORT MEDCouplingUMeshCellIterator *iterator(); private: MEDCouplingUMesh *_mesh; INTERP_KERNEL::NormalizedCellType _type; MEDCouplingUMeshCell *_itc; - int _bg; - int _end; + mcIdType _bg; + mcIdType _end; }; class MEDCouplingUMeshCellByTypeIterator @@ -407,8 +423,8 @@ namespace ParaMEDMEM private: MEDCouplingUMesh *_mesh; MEDCouplingUMeshCell *_cell; - int _cell_id; - int _nb_cell; + mcIdType _cell_id; + mcIdType _nb_cell; }; class MEDCouplingUMeshCell @@ -418,13 +434,38 @@ namespace ParaMEDMEM MEDCOUPLING_EXPORT void next(); MEDCOUPLING_EXPORT std::string repr() const; MEDCOUPLING_EXPORT INTERP_KERNEL::NormalizedCellType getType() const; - MEDCOUPLING_EXPORT const int *getAllConn(int& lgth) const; + MEDCOUPLING_EXPORT const mcIdType *getAllConn(mcIdType& lgth) const; private: - int *_conn; - int *_conn_indx; - int _conn_lgth; + mcIdType *_conn; + mcIdType *_conn_indx; + mcIdType _conn_lgth; static const int NOTICABLE_FIRST_VAL=-7; }; + + template + class UMeshGenIterator : public std::iterator< std::input_iterator_tag, const TOUT *, mcIdType, const TOUT **, const TOUT *> + { + std::size_t _num = 0; + std::vector *_data = nullptr; + using my_reference = typename std::iterator< std::input_iterator_tag, const TOUT *, mcIdType, const TOUT **, const TOUT *>::reference; + public: + explicit UMeshGenIterator(std::size_t num , std::vector *data) : _num(num),_data(data) {} + UMeshGenIterator& operator++() { ++_num; return *this; } + bool operator==(const UMeshGenIterator& other) const { return _num == other._num; } + bool operator!=(const UMeshGenIterator& other) const { return !(*this == other); } + my_reference operator*() const { T tt; return tt((*_data)[_num]); } + }; + + struct UMeshIndexConnectivityFunctor { const DataArrayIdType *operator()(const MEDCouplingUMesh *um) { return um->getNodalConnectivityIndex(); } }; + + using UMeshConnectivityIndexIterator = UMeshGenIterator; + + struct UMeshConnectivityFunctor { const DataArrayIdType *operator()(const MEDCouplingUMesh *um) { return um->getNodalConnectivity(); } }; + + using UMeshConnectivityIterator = UMeshGenIterator; + + struct UMeshCoordsFunctor { const DataArrayDouble *operator()(const MEDCouplingUMesh *um) { return um->getCoords(); } }; + + using UMeshCoordsIterator = UMeshGenIterator; } -#endif