X-Git-Url: http://git.salome-platform.org/gitweb/?a=blobdiff_plain;f=src%2FMEDCoupling%2FMEDCouplingStructuredMesh.cxx;h=3570a3b00938d69e47d1d16ac9c203ebf1f5736f;hb=fe438311fdcdfa797c8e6a95357164a89cc7abc0;hp=71b581d3c07711d9e84709562f459d6e3dbe9f06;hpb=9b477477cc54b36d544f215af2060ed817a876dd;p=tools%2Fmedcoupling.git diff --git a/src/MEDCoupling/MEDCouplingStructuredMesh.cxx b/src/MEDCoupling/MEDCouplingStructuredMesh.cxx old mode 100644 new mode 100755 index 71b581d3c..3570a3b00 --- a/src/MEDCoupling/MEDCouplingStructuredMesh.cxx +++ b/src/MEDCoupling/MEDCouplingStructuredMesh.cxx @@ -1,9 +1,9 @@ -// Copyright (C) 2007-2013 CEA/DEN, EDF R&D +// Copyright (C) 2007-2020 CEA/DEN, EDF R&D // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either -// version 2.1 of the License. +// version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of @@ -23,16 +23,17 @@ #include "MEDCouplingMemArray.hxx" #include "MEDCoupling1GTUMesh.hxx" #include "MEDCouplingUMesh.hxx" +#include "MEDCouplingIMesh.hxx"//tony to throw when optimization will be performed in AssignPartOfFieldOfDoubleUsing #include -using namespace ParaMEDMEM; +using namespace MEDCoupling; MEDCouplingStructuredMesh::MEDCouplingStructuredMesh() { } -MEDCouplingStructuredMesh::MEDCouplingStructuredMesh(const MEDCouplingStructuredMesh& other, bool deepCopy):MEDCouplingMesh(other) +MEDCouplingStructuredMesh::MEDCouplingStructuredMesh(const MEDCouplingStructuredMesh& other, bool deepCpy):MEDCouplingMesh(other) { } @@ -55,7 +56,7 @@ bool MEDCouplingStructuredMesh::isEqualIfNotWhy(const MEDCouplingMesh *other, do return MEDCouplingMesh::isEqualIfNotWhy(other,prec,reason); } -INTERP_KERNEL::NormalizedCellType MEDCouplingStructuredMesh::getTypeOfCell(int cellId) const +INTERP_KERNEL::NormalizedCellType MEDCouplingStructuredMesh::getTypeOfCell(mcIdType cellId) const { return GetGeoTypeGivenMeshDimension(getMeshDimension()); } @@ -63,7 +64,7 @@ INTERP_KERNEL::NormalizedCellType MEDCouplingStructuredMesh::getTypeOfCell(int c INTERP_KERNEL::NormalizedCellType MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension(int meshDim) { switch(meshDim) - { + { case 3: return INTERP_KERNEL::NORM_HEXA8; case 2: @@ -74,7 +75,7 @@ INTERP_KERNEL::NormalizedCellType MEDCouplingStructuredMesh::GetGeoTypeGivenMesh return INTERP_KERNEL::NORM_POINT1; default: throw INTERP_KERNEL::Exception("Unexpected dimension for MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension !"); - } + } } std::set MEDCouplingStructuredMesh::getAllGeoTypes() const @@ -84,19 +85,19 @@ std::set MEDCouplingStructuredMesh::getAllGeo return ret2; } -int MEDCouplingStructuredMesh::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const +mcIdType MEDCouplingStructuredMesh::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const { - int ret=getNumberOfCells(); + mcIdType ret(getNumberOfCells()); if(type==getTypeOfCell(0)) return ret; - const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(getTypeOfCell(0)); + const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(getTypeOfCell(0))); std::ostringstream oss; oss << "MEDCouplingStructuredMesh::getNumberOfCellsWithType : no specified type ! Type available is " << cm.getRepr() << " !"; throw INTERP_KERNEL::Exception(oss.str().c_str()); } -DataArrayInt *MEDCouplingStructuredMesh::giveCellsWithType(INTERP_KERNEL::NormalizedCellType type) const +DataArrayIdType *MEDCouplingStructuredMesh::giveCellsWithType(INTERP_KERNEL::NormalizedCellType type) const { - MEDCouplingAutoRefCountObjectPtr ret=DataArrayInt::New(); + MCAuto ret=DataArrayIdType::New(); if(getTypeOfCell(0)==type) { ret->alloc(getNumberOfCells(),1); @@ -107,23 +108,23 @@ DataArrayInt *MEDCouplingStructuredMesh::giveCellsWithType(INTERP_KERNEL::Normal return ret.retn(); } -DataArrayInt *MEDCouplingStructuredMesh::computeNbOfNodesPerCell() const +DataArrayIdType *MEDCouplingStructuredMesh::computeNbOfNodesPerCell() const { - int nbCells=getNumberOfCells(); - MEDCouplingAutoRefCountObjectPtr ret=DataArrayInt::New(); + std::size_t nbCells=getNumberOfCells(); + MCAuto ret=DataArrayIdType::New(); ret->alloc(nbCells,1); const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(getTypeOfCell(0)); - ret->fillWithValue((int)cm.getNumberOfNodes()); + ret->fillWithValue(ToIdType(cm.getNumberOfNodes())); return ret.retn(); } -DataArrayInt *MEDCouplingStructuredMesh::computeNbOfFacesPerCell() const +DataArrayIdType *MEDCouplingStructuredMesh::computeNbOfFacesPerCell() const { - int nbCells=getNumberOfCells(); - MEDCouplingAutoRefCountObjectPtr ret=DataArrayInt::New(); + std::size_t nbCells=getNumberOfCells(); + MCAuto ret=DataArrayIdType::New(); ret->alloc(nbCells,1); const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(getTypeOfCell(0)); - ret->fillWithValue((int)cm.getNumberOfSons()); + ret->fillWithValue(ToIdType(cm.getNumberOfSons())); return ret.retn(); } @@ -132,23 +133,23 @@ DataArrayInt *MEDCouplingStructuredMesh::computeNbOfFacesPerCell() const * will be counted only once here whereas it will be counted several times in MEDCouplingMesh::computeNbOfNodesPerCell method. * Here for structured mesh it returns exactly as MEDCouplingStructuredMesh::computeNbOfNodesPerCell does. * - * \return DataArrayInt * - new object to be deallocated by the caller. + * \return DataArrayIdType * - new object to be deallocated by the caller. */ -DataArrayInt *MEDCouplingStructuredMesh::computeEffectiveNbOfNodesPerCell() const +DataArrayIdType *MEDCouplingStructuredMesh::computeEffectiveNbOfNodesPerCell() const { return computeNbOfNodesPerCell(); } -void MEDCouplingStructuredMesh::getNodeIdsOfCell(int cellId, std::vector& conn) const +void MEDCouplingStructuredMesh::getNodeIdsOfCell(mcIdType cellId, std::vector& conn) const { int meshDim=getMeshDimension(); - int tmpCell[3],tmpNode[3]; + mcIdType tmpCell[3],tmpNode[3]; getSplitCellValues(tmpCell); getSplitNodeValues(tmpNode); - int tmp2[3]; + mcIdType tmp2[3]; GetPosFromId(cellId,meshDim,tmpCell,tmp2); switch(meshDim) - { + { case 1: conn.push_back(tmp2[0]); conn.push_back(tmp2[0]+1); break; @@ -164,16 +165,81 @@ void MEDCouplingStructuredMesh::getNodeIdsOfCell(int cellId, std::vector& c break; default: throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::getNodeIdsOfCell : big problem spacedim must be in 1,2 or 3 !"); - }; + }; +} + +/*! + * This method returns the mesh dimension of \a this. It can be different from space dimension in case of a not null dimension contains only one node. + */ +int MEDCouplingStructuredMesh::getMeshDimension() const +{ + std::vector ngs(getNodeGridStructure()); + int ret(0),pos(0); + for(std::vector::const_iterator it=ngs.begin();it!=ngs.end();it++,pos++) + { + if(*it<=0) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::getMeshDimension : At pos #" << pos << " number of nodes is " << *it << " ! Must be > 0 !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + if(*it>1) + ret++; + } + return ret; +} + +/*! + * This method returns the space dimension by only considering the node grid structure. + * For cartesian mesh the returned value is equal to those returned by getSpaceDimension. + * But for curvelinear is could be different ! + */ +int MEDCouplingStructuredMesh::getSpaceDimensionOnNodeStruct() const +{ + std::vector nodeStr(getNodeGridStructure()); + int spd1(0),pos(0); + for(std::vector::const_iterator it=nodeStr.begin();it!=nodeStr.end();it++,pos++) + { + mcIdType elt(*it); + if(elt<=0) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::getSpaceDimensionOnNodeStruct : At pos #" << pos << " value of node grid structure is " << *it << " ! must be >=1 !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + spd1++; + } + return spd1; +} + +void MEDCouplingStructuredMesh::getSplitCellValues(mcIdType *res) const +{ + std::vector strct(getCellGridStructure()); + std::vector ret(MEDCouplingStructuredMesh::GetSplitVectFromStruct(strct)); + std::copy(ret.begin(),ret.end(),res); +} + +void MEDCouplingStructuredMesh::getSplitNodeValues(mcIdType *res) const +{ + std::vector strct(getNodeGridStructure()); + std::vector ret(MEDCouplingStructuredMesh::GetSplitVectFromStruct(strct)); + std::copy(ret.begin(),ret.end(),res); +} + +/*! + * This method returns the number of cells of unstructured sub level mesh, without building it. + */ +mcIdType MEDCouplingStructuredMesh::getNumberOfCellsOfSubLevelMesh() const +{ + std::vector cgs(getCellGridStructure()); + return GetNumberOfCellsOfSubLevelMesh(cgs,getMeshDimension()); } /*! * See MEDCouplingUMesh::getDistributionOfTypes for more information */ -std::vector MEDCouplingStructuredMesh::getDistributionOfTypes() const +std::vector MEDCouplingStructuredMesh::getDistributionOfTypes() const { //only one type of cell - std::vector ret(3); + std::vector ret(3); ret[0]=getTypeOfCell(0); ret[1]=getNumberOfCells(); ret[2]=-1; //ret[3*k+2]==-1 because it has no sense here @@ -183,15 +249,15 @@ std::vector MEDCouplingStructuredMesh::getDistributionOfTypes() const /*! * This method tries to minimize at most the number of deep copy. * So if \a idsPerType is not empty it can be returned directly (without copy, but with ref count incremented) in return. - * + * * See MEDCouplingUMesh::checkTypeConsistencyAndContig for more information */ -DataArrayInt *MEDCouplingStructuredMesh::checkTypeConsistencyAndContig(const std::vector& code, const std::vector& idsPerType) const +DataArrayIdType *MEDCouplingStructuredMesh::checkTypeConsistencyAndContig(const std::vector& code, const std::vector& idsPerType) const { - int nbOfCells=getNumberOfCells(); + mcIdType nbOfCells=getNumberOfCells(); if(code.size()!=3) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::checkTypeConsistencyAndContig : invalid input code should be exactly of size 3 !"); - if(code[0]!=(int)getTypeOfCell(0)) + if(code[0]!=ToIdType(getTypeOfCell(0))) { std::ostringstream oss; oss << "MEDCouplingStructuredMesh::checkTypeConsistencyAndContig : Mismatch of geometric type ! Asking for " << code[0] << " whereas the geometric type is \a this is " << getTypeOfCell(0) << " !"; throw INTERP_KERNEL::Exception(oss.str().c_str()); @@ -209,28 +275,28 @@ DataArrayInt *MEDCouplingStructuredMesh::checkTypeConsistencyAndContig(const std if(code[2]!=0) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::checkTypeConsistencyAndContig : single geo type mesh ! 0 or -1 is expected at pos #2 of input code !"); if(idsPerType.size()!=1) - throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::checkTypeConsistencyAndContig : input code points to DataArrayInt #0 whereas the size of idsPerType is not equal to 1 !"); - const DataArrayInt *pfl=idsPerType[0]; + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::checkTypeConsistencyAndContig : input code points to DataArrayIdType #0 whereas the size of idsPerType is not equal to 1 !"); + const DataArrayIdType *pfl=idsPerType[0]; if(!pfl) - throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::checkTypeConsistencyAndContig : the input code points to a NULL DataArrayInt at rank 0 !"); + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::checkTypeConsistencyAndContig : the input code points to a NULL DataArrayIdType at rank 0 !"); if(pfl->getNumberOfComponents()!=1) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::checkTypeConsistencyAndContig : input profile should have exactly one component !"); pfl->checkAllIdsInRange(0,nbOfCells); pfl->incrRef(); - return const_cast(pfl); + return const_cast(pfl); } /*! * This method is the opposite of MEDCouplingUMesh::checkTypeConsistencyAndContig method. Given a list of cells in \a profile it returns a list of sub-profiles sorted by geo type. * The result is put in the array \a idsPerType. In the returned parameter \a code, foreach i \a code[3*i+2] refers (if different from -1) to a location into the \a idsPerType. * This method has 1 input \a profile and 3 outputs \a code \a idsInPflPerType and \a idsPerType. - * + * * \param [out] code is a vector of size 3*n where n is the number of different geometric type in \a this \b reduced to the profile \a profile. \a code has exactly the same semantic than in MEDCouplingUMesh::checkTypeConsistencyAndContig method. * \param [out] idsInPflPerType is a vector of size of different geometric type in the subpart defined by \a profile of \a this ( equal to \a code.size()/3). For each i, * \a idsInPflPerType[i] stores the tuple ids in \a profile that correspond to the geometric type code[3*i+0] * \param [out] idsPerType is a vector of size of different sub profiles needed to be defined to represent the profile \a profile for a given geometric type. * This vector can be empty in case of all geometric type cells are fully covered in ascending in the given input \a profile. - * + * * \warning for performance reasons no deep copy will be performed, if \a profile can been used as this in output parameters \a idsInPflPerType and \a idsPerType. * * \throw if \a profile has not exactly one component. It throws too, if \a profile contains some values not in [0,getNumberOfCells()) or if \a this is not fully defined @@ -238,27 +304,27 @@ DataArrayInt *MEDCouplingStructuredMesh::checkTypeConsistencyAndContig(const std * \b Example1:
* - Before \a this has 3 cells \a profile contains [0,1,2] * - After \a code contains [NORM_...,nbCells,-1], \a idsInPflPerType [[0,1,2]] and \a idsPerType is empty
- * + * * \b Example2:
* - Before \a this has 3 cells \a profile contains [1,2] * - After \a code contains [NORM_...,nbCells,0], \a idsInPflPerType [[0,1]] and \a idsPerType is [[1,2]]
*/ -void MEDCouplingStructuredMesh::splitProfilePerType(const DataArrayInt *profile, std::vector& code, std::vector& idsInPflPerType, std::vector& idsPerType) const +void MEDCouplingStructuredMesh::splitProfilePerType(const DataArrayIdType *profile, std::vector& code, std::vector& idsInPflPerType, std::vector& idsPerType, bool smartPflKiller) const { if(!profile || !profile->isAllocated()) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::splitProfilePerType : input profile is NULL or not allocated !"); if(profile->getNumberOfComponents()!=1) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::splitProfilePerType : input profile should have exactly one component !"); - int nbTuples=profile->getNumberOfTuples(); - int nbOfCells=getNumberOfCells(); + mcIdType nbTuples(profile->getNumberOfTuples()); + mcIdType nbOfCells=getNumberOfCells(); code.resize(3); idsInPflPerType.resize(1); - code[0]=(int)getTypeOfCell(0); code[1]=nbOfCells; + code[0]=ToIdType(getTypeOfCell(0)); code[1]=nbOfCells; idsInPflPerType.resize(1); - if(profile->isIdentity() && nbTuples==nbOfCells) + if(smartPflKiller && profile->isIota(nbOfCells)) { code[2]=-1; - idsInPflPerType[0]=0; + idsInPflPerType[0]=profile->deepCopy(); idsPerType.clear(); return ; } @@ -266,39 +332,70 @@ void MEDCouplingStructuredMesh::splitProfilePerType(const DataArrayInt *profile, code[2]=0; profile->checkAllIdsInRange(0,nbOfCells); idsPerType.resize(1); - idsPerType[0]=profile->deepCpy(); - idsInPflPerType[0]=DataArrayInt::Range(0,nbTuples,1); + idsPerType[0]=profile->deepCopy(); + idsInPflPerType[0]=DataArrayIdType::Range(0,nbTuples,1); } /*! * Creates a new unstructured mesh (MEDCoupling1SGTUMesh) from \a this structured one. + * + * In the returned mesh, the nodes are ordered with the first axis varying first: (X0,Y0), (X1,Y0), ... (X0,Y1), (X1,Y1), ... + * and the cells are ordered with the same logic, i.e. in (i,j) notation: (0,0), (1,0), (2,0), ... (0,1), (1,1), ... + * * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is to - * delete this array using decrRef() as it is no more needed. + * delete this array using decrRef() as it is no more needed. * \throw If \a this->getMeshDimension() is not among [1,2,3]. */ MEDCoupling1SGTUMesh *MEDCouplingStructuredMesh::build1SGTUnstructured() const { - int meshDim=getMeshDimension(); - if(meshDim<0 || meshDim>3) - throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::build1SGTUnstructured : meshdim must be in [1,2,3] !"); - MEDCouplingAutoRefCountObjectPtr coords(getCoordinatesAndOwner()); - int ns[3]; + int meshDim(getMeshDimension()),spaceDim(getSpaceDimensionOnNodeStruct()); + if((meshDim<0 || meshDim>3) || (spaceDim<0 || spaceDim>3)) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::build1SGTUnstructured : meshdim and spacedim must be in [1,2,3] !"); + MCAuto coords(getCoordinatesAndOwner()); + mcIdType ns[3]; + getNodeGridStructure(ns); + MCAuto conn(Build1GTNodalConnectivity(ns,ns+spaceDim)); + MCAuto ret(MEDCoupling1SGTUMesh::New(getName(),GetGeoTypeGivenMeshDimension(meshDim))); + ret->setNodalConnectivity(conn); ret->setCoords(coords); + try + { ret->copyTinyInfoFrom(this); } + catch(INTERP_KERNEL::Exception&) { } + return ret.retn(); +} + +/*! + * This method returns the unstructured mesh (having single geometric type) of the sub level mesh of \a this. + * This method is equivalent to computing MEDCouplingUMesh::buildDescendingConnectivity on the unstructurized \a this mesh. + * + * The caller is to delete the returned mesh using decrRef() as it is no more needed. + */ +MEDCoupling1SGTUMesh *MEDCouplingStructuredMesh::build1SGTSubLevelMesh() const +{ + int meshDim(getMeshDimension()); + if(meshDim<1 || meshDim>3) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::build1SGTSubLevelMesh : meshdim must be in [2,3] !"); + MCAuto coords(getCoordinatesAndOwner()); + mcIdType ns[3]; getNodeGridStructure(ns); - MEDCouplingAutoRefCountObjectPtr conn(Build1GTNodalConnectivity(ns,ns+meshDim)); - MEDCouplingAutoRefCountObjectPtr ret(MEDCoupling1SGTUMesh::New(getName().c_str(),GetGeoTypeGivenMeshDimension(meshDim))); + MCAuto conn(Build1GTNodalConnectivityOfSubLevelMesh(ns,ns+meshDim)); + MCAuto ret(MEDCoupling1SGTUMesh::New(getName(),GetGeoTypeGivenMeshDimension(meshDim-1))); ret->setNodalConnectivity(conn); ret->setCoords(coords); return ret.retn(); } /*! * Creates a new unstructured mesh (MEDCouplingUMesh) from \a this structured one. + * + * In the returned mesh, the nodes are ordered with the first axis varying first: (X0,Y0), (X1,Y0), ... (X0,Y1), (X1,Y1), ... + * and the cells are ordered with the same logic, i.e. in (i,j) notation: (0,0), (1,0), (2,0), ... (0,1), (1,1), ... + * * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is to - * delete this array using decrRef() as it is no more needed. + * delete this array using decrRef() as it is no more needed. * \throw If \a this->getMeshDimension() is not among [1,2,3]. */ MEDCouplingUMesh *MEDCouplingStructuredMesh::buildUnstructured() const { - MEDCouplingAutoRefCountObjectPtr ret0(build1SGTUnstructured()); + MCAuto ret0(build1SGTUnstructured()); return ret0->buildUnstructured(); } @@ -310,44 +407,40 @@ MEDCouplingUMesh *MEDCouplingStructuredMesh::buildUnstructured() const * \param [in] end - specifies the end of the array \a start, so that * the last value of \a start is \a end[ -1 ]. * \return MEDCouplingMesh * - a new instance of MEDCouplingUMesh. The caller is to - * delete this mesh using decrRef() as it is no more needed. + * delete this mesh using decrRef() as it is no more needed. */ -MEDCouplingMesh *MEDCouplingStructuredMesh::buildPart(const int *start, const int *end) const +MEDCouplingMesh *MEDCouplingStructuredMesh::buildPart(const mcIdType *start, const mcIdType *end) const { - MEDCouplingUMesh *um=buildUnstructured(); - MEDCouplingMesh *ret=um->buildPart(start,end); - um->decrRef(); - return ret; + MCAuto um(buildUnstructured()); + return um->buildPart(start,end); } -MEDCouplingMesh *MEDCouplingStructuredMesh::buildPartAndReduceNodes(const int *start, const int *end, DataArrayInt*& arr) const +MEDCouplingMesh *MEDCouplingStructuredMesh::buildPartAndReduceNodes(const mcIdType *start, const mcIdType *end, DataArrayIdType*& arr) const { - std::vector cgs(getCellGridStructure()); - std::vector< std::pair > cellPartFormat,nodePartFormat; + std::vector cgs(getCellGridStructure()); + std::vector< std::pair > cellPartFormat,nodePartFormat; if(IsPartStructured(start,end,cgs,cellPartFormat)) { - MEDCouplingAutoRefCountObjectPtr ret(buildStructuredSubPart(cellPartFormat)); + MCAuto ret(buildStructuredSubPart(cellPartFormat)); nodePartFormat=cellPartFormat; - for(std::vector< std::pair >::iterator it=nodePartFormat.begin();it!=nodePartFormat.end();it++) + for(std::vector< std::pair >::iterator it=nodePartFormat.begin();it!=nodePartFormat.end();it++) (*it).second++; - MEDCouplingAutoRefCountObjectPtr tmp1(BuildExplicitIdsFrom(getNodeGridStructure(),nodePartFormat)); - MEDCouplingAutoRefCountObjectPtr tmp2(DataArrayInt::New()); tmp2->alloc(getNumberOfNodes(),1); + MCAuto tmp1(BuildExplicitIdsFrom(getNodeGridStructure(),nodePartFormat)); + MCAuto tmp2(DataArrayIdType::New()); tmp2->alloc(getNumberOfNodes(),1); tmp2->fillWithValue(-1); - MEDCouplingAutoRefCountObjectPtr tmp3(DataArrayInt::New()); tmp3->alloc(tmp1->getNumberOfTuples(),1); tmp3->iota(0); + MCAuto tmp3(DataArrayIdType::New()); tmp3->alloc(tmp1->getNumberOfTuples(),1); tmp3->iota(0); tmp2->setPartOfValues3(tmp3,tmp1->begin(),tmp1->end(),0,1,1); arr=tmp2.retn(); return ret.retn(); } else { - MEDCouplingUMesh *um=buildUnstructured(); - MEDCouplingMesh *ret=um->buildPartAndReduceNodes(start,end,arr); - um->decrRef(); - return ret; + MCAuto um(buildUnstructured()); + return um->buildPartAndReduceNodes(start,end,arr); } } -DataArrayInt *MEDCouplingStructuredMesh::simplexize(int policy) +DataArrayIdType *MEDCouplingStructuredMesh::simplexize(int policy) { throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::simplexize : not available for Cartesian mesh !"); } @@ -364,22 +457,21 @@ MEDCouplingFieldDouble *MEDCouplingStructuredMesh::buildOrthogonalField() const { if(getMeshDimension()!=2) throw INTERP_KERNEL::Exception("Expected a MEDCouplingStructuredMesh with meshDim == 2 !"); - MEDCouplingFieldDouble *ret=MEDCouplingFieldDouble::New(ON_CELLS,NO_TIME); - DataArrayDouble *array=DataArrayDouble::New(); - int nbOfCells=getNumberOfCells(); + MCAuto ret(MEDCouplingFieldDouble::New(ON_CELLS,NO_TIME)); + MCAuto array(DataArrayDouble::New()); + mcIdType nbOfCells=getNumberOfCells(); array->alloc(nbOfCells,3); - double *vals=array->getPointer(); - for(int i=0;igetPointer()); + for(mcIdType i=0;isetArray(array); - array->decrRef(); ret->setMesh(this); - return ret; + return ret.retn(); } -void MEDCouplingStructuredMesh::getReverseNodalConnectivity(DataArrayInt *revNodal, DataArrayInt *revNodalIndx) const +void MEDCouplingStructuredMesh::getReverseNodalConnectivity(DataArrayIdType *revNodal, DataArrayIdType *revNodalIndx) const { - std::vector ngs(getNodeGridStructure()); + std::vector ngs(getNodeGridStructure()); int dim(getSpaceDimension()); switch(dim) { @@ -394,18 +486,18 @@ void MEDCouplingStructuredMesh::getReverseNodalConnectivity(DataArrayInt *revNod } } -void MEDCouplingStructuredMesh::GetReverseNodalConnectivity1(const std::vector& ngs, DataArrayInt *revNodal, DataArrayInt *revNodalIndx) +void MEDCouplingStructuredMesh::GetReverseNodalConnectivity1(const std::vector& ngs, DataArrayIdType *revNodal, DataArrayIdType *revNodalIndx) { - int nbNodes(ngs[0]); + mcIdType nbNodes(ngs[0]); revNodalIndx->alloc(nbNodes+1,1); if(nbNodes==0) { revNodal->alloc(0,1); revNodalIndx->setIJ(0,0,0); return ; } if(nbNodes==1) { revNodal->alloc(1,1); revNodal->setIJ(0,0,0); revNodalIndx->setIJ(0,0,0); revNodalIndx->setIJ(1,0,1); return ; } revNodal->alloc(2*(nbNodes-1),1); - int *rn(revNodal->getPointer()),*rni(revNodalIndx->getPointer()); + mcIdType *rn(revNodal->getPointer()),*rni(revNodalIndx->getPointer()); *rni++=0; *rni=1; *rn++=0; - for(int i=1;i& ngs, DataArrayInt *revNodal, DataArrayInt *revNodalIndx) +void MEDCouplingStructuredMesh::GetReverseNodalConnectivity2(const std::vector& ngs, DataArrayIdType *revNodal, DataArrayIdType *revNodalIndx) { - int nbNodesX(ngs[0]),nbNodesY(ngs[1]); - int nbNodes(nbNodesX*nbNodesY); + mcIdType nbNodesX(ngs[0]),nbNodesY(ngs[1]); + mcIdType nbNodes(nbNodesX*nbNodesY); if(nbNodesX==0 || nbNodesY==0) { revNodal->alloc(0,1); revNodalIndx->setIJ(0,0,0); return ; } if(nbNodesX==1 || nbNodesY==1) - { std::vector ngs2(1); ngs2[0]=std::max(nbNodesX,nbNodesY); return GetReverseNodalConnectivity1(ngs2,revNodal,revNodalIndx); } + { std::vector ngs2(1); ngs2[0]=std::max(nbNodesX,nbNodesY); return GetReverseNodalConnectivity1(ngs2,revNodal,revNodalIndx); } revNodalIndx->alloc(nbNodes+1,1); - int nbCellsX(nbNodesX-1),nbCellsY(nbNodesY-1); + mcIdType nbCellsX(nbNodesX-1),nbCellsY(nbNodesY-1); revNodal->alloc(4*(nbNodesX-2)*(nbNodesY-2)+2*2*(nbNodesX-2)+2*2*(nbNodesY-2)+4,1); - int *rn(revNodal->getPointer()),*rni(revNodalIndx->getPointer()); + mcIdType *rn(revNodal->getPointer()),*rni(revNodalIndx->getPointer()); *rni++=0; *rni=1; *rn++=0; - for(int i=1;i& ngs, DataArrayInt *revNodal, DataArrayInt *revNodalIndx) +void MEDCouplingStructuredMesh::GetReverseNodalConnectivity3(const std::vector& ngs, DataArrayIdType *revNodal, DataArrayIdType *revNodalIndx) { - int nbNodesX(ngs[0]),nbNodesY(ngs[1]),nbNodesZ(ngs[2]); - int nbNodes(nbNodesX*nbNodesY*nbNodesZ); + mcIdType nbNodesX(ngs[0]),nbNodesY(ngs[1]),nbNodesZ(ngs[2]); + mcIdType nbNodes(nbNodesX*nbNodesY*nbNodesZ); if(nbNodesX==0 || nbNodesY==0 || nbNodesZ==0) { revNodal->alloc(0,1); revNodalIndx->setIJ(0,0,0); return ; } if(nbNodesX==1 || nbNodesY==1 || nbNodesZ==1) { - std::vector ngs2(2); - int pos(0); + std::vector ngs2(2); + mcIdType pos(0); bool pass(false); for(int i=0;i<3;i++) { @@ -483,21 +575,21 @@ void MEDCouplingStructuredMesh::GetReverseNodalConnectivity3(const std::vectoralloc(nbNodes+1,1); - int nbCellsX(nbNodesX-1),nbCellsY(nbNodesY-1),nbCellsZ(nbNodesZ-1); + mcIdType nbCellsX(nbNodesX-1),nbCellsY(nbNodesY-1),nbCellsZ(nbNodesZ-1); revNodal->alloc(8*(nbNodesX-2)*(nbNodesY-2)*(nbNodesZ-2)+4*(2*(nbNodesX-2)*(nbNodesY-2)+2*(nbNodesX-2)*(nbNodesZ-2)+2*(nbNodesY-2)*(nbNodesZ-2))+2*4*(nbNodesX-2)+2*4*(nbNodesY-2)+2*4*(nbNodesZ-2)+8,1); - int *rn(revNodal->getPointer()),*rni(revNodalIndx->getPointer()); + mcIdType *rn(revNodal->getPointer()),*rni(revNodalIndx->getPointer()); *rni=0; - for(int k=0;k=1 && j>=1 && i>=1) *rn++=off00+i-1; if(k>=1 && j>=1 && i conn(DataArrayInt::New()); + MCAuto conn(DataArrayIdType::New()); conn->alloc(1,1); conn->setIJ(0,0,0); return conn.retn(); } case 1: - return Build1GTNodalConnectivity1D(nodeStBg); + return Build1GTNodalConnectivity1D(zippedNodeSt); case 2: - return Build1GTNodalConnectivity2D(nodeStBg); + return Build1GTNodalConnectivity2D(zippedNodeSt); case 3: - return Build1GTNodalConnectivity3D(nodeStBg); + return Build1GTNodalConnectivity3D(zippedNodeSt); default: throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::Build1GTNodalConnectivity : only dimension in [0,1,2,3] supported !"); + } +} + +DataArrayIdType *MEDCouplingStructuredMesh::Build1GTNodalConnectivityOfSubLevelMesh(const mcIdType *nodeStBg, const mcIdType *nodeStEnd) +{ + std::size_t dim(std::distance(nodeStBg,nodeStEnd)); + switch(dim) + { + case 3: + return Build1GTNodalConnectivityOfSubLevelMesh3D(nodeStBg); + case 2: + return Build1GTNodalConnectivityOfSubLevelMesh2D(nodeStBg); + default: + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::Build1GTNodalConnectivityOfSubLevelMesh: only dimension in [2,3] supported !"); + } +} + +/*! + * This method returns the list of ids sorted ascendingly of entities that are in the corner in ghost zone. + * The ids are returned in a newly created DataArrayIdType having a single component. + * + * \param [in] st - The structure \b without ghost cells. + * \param [in] ghostLev - The size of the ghost zone (>=0) + * \return DataArrayIdType * - The DataArray containing all the ids the caller is to deallocate. + */ +DataArrayIdType *MEDCouplingStructuredMesh::ComputeCornersGhost(const std::vector& st, mcIdType ghostLev) +{ + if(ghostLev<0) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ComputeCornersGhost : ghost lev must be >= 0 !"); + std::size_t dim(st.size()); + MCAuto ret(DataArrayIdType::New()); + switch(dim) + { + case 1: + { + ret->alloc(2*ghostLev,1); + mcIdType *ptr(ret->getPointer()); + for(mcIdType i=0;i= 0 !"); + for(mcIdType i=0;i= 0 !"); + ret->alloc(4*ghostLev,1); + mcIdType *ptr(ret->getPointer()); + for(mcIdType i=0;i= 0 !"); + ret->alloc(8*ghostLev,1); + mcIdType *ptr(ret->getPointer()); + mcIdType zeOffsetZ((offsetX+2*ghostLev)*(offsetY+2*ghostLev)); + for(mcIdType i=0;i=0;i--,j++) + { + *ptr++=i*(2*ghostLev+offsetX+1)+j*zeOffsetZ+zeOffsetZ2; + *ptr++=offsetX+2*ghostLev-1+i*(2*ghostLev+offsetX-1)+j*zeOffsetZ+zeOffsetZ2; + *ptr++=(2*ghostLev+offsetX)*(offsetY+ghostLev)+ghostLev-1+(ghostLev-i-1)*(2*ghostLev+offsetX-1)+j*zeOffsetZ+zeOffsetZ2; + *ptr++=(2*ghostLev+offsetX)*(offsetY+ghostLev)+offsetX+ghostLev+(ghostLev-i-1)*(2*ghostLev+offsetX+1)+j*zeOffsetZ+zeOffsetZ2; + } + break; + } + default: + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ComputeCornersGhost : Only dimensions 1, 2 and 3 are supported actually !"); + } + return ret.retn(); +} + +/*! + * This method retrieves the number of entities (it can be cells or nodes) given a range in compact standard format + * used in methods like BuildExplicitIdsFrom,IsPartStructured. + * + * \sa BuildExplicitIdsFrom,IsPartStructured + */ +mcIdType MEDCouplingStructuredMesh::DeduceNumberOfGivenRangeInCompactFrmt(const std::vector< std::pair >& partCompactFormat) +{ + mcIdType ret(1); + std::size_t ii(0); + for(std::vector< std::pair >::const_iterator it=partCompactFormat.begin();it!=partCompactFormat.end();it++,ii++) + { + mcIdType a((*it).first),b((*it).second); + if(a<0 || b<0 || b-a<0) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::DeduceNumberOfGivenRangeInCompactFrmt : invalid input at dimension " << ii << " !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + ret*=(b-a); + } + return ret; +} + +mcIdType MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(const std::vector& st) +{ + mcIdType ret(1); + bool isFetched(false); + for(std::size_t i=0;i >& partCompactFormat, int& axisId, mcIdType& sizeOfRange) +{ + mcIdType dim(ToIdType(partCompactFormat.size())); + mcIdType ret(-1); + for(int i=0;iret) + { + axisId=i; sizeOfRange=curDelta; + ret=curDelta; + } + } +} + +/*! + * This method is \b NOT wrapped in python because it has no sense in python (for performance reasons). + * This method starts from a structured mesh with structure \a st on which a boolean field \a crit is set. + * This method find for such minimalist information of mesh and field which is the part of the mesh, given by the range per axis in output parameter + * \a partCompactFormat that contains all the True in \a crit. The returned vector of boolean is the field reduced to that part. + * So the number of True is equal in \a st and in returned vector of boolean. + * + * \param [in] minPatchLgth - minimum length that the patch may have for all directions. + * \param [in] st - The structure per axis of the structured mesh considered. + * \param [in] crit - The field of boolean (for performance reasons) lying on the mesh defined by \a st. + * \param [out] partCompactFormat - The minimal part of \a st containing all the true of \a crit. + * \param [out] reducedCrit - The reduction of \a criterion on \a partCompactFormat. + * \return - The number of True in \a st (that is equal to those in \a reducedCrit) + */ +mcIdType MEDCouplingStructuredMesh::FindMinimalPartOf(mcIdType minPatchLgth, const std::vector& st, const std::vector& crit, std::vector& reducedCrit, std::vector< std::pair >& partCompactFormat) +{ + if(minPatchLgth<0) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::FindMinimalPartOf : the input minPatchLgth has to be >=0 !"); + if(ToIdType(crit.size())!=DeduceNumberOfGivenStructure(st)) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::FindMinimalPartOf : size of vector of boolean is invalid regarding the declared structure !"); + mcIdType ret(-1); + switch(st.size()) + { + case 1: + { + ret=FindMinimalPartOf1D(st,crit,partCompactFormat); + break; + } + case 2: + { + ret=FindMinimalPartOf2D(st,crit,partCompactFormat); + break; + } + case 3: + { + ret=FindMinimalPartOf3D(st,crit,partCompactFormat); + break; + } + default: + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::FindMinimalPartOf : only dimension 1, 2 and 3 are supported actually !"); + } + std::vector dims(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(partCompactFormat)); + mcIdType i(0); + for(std::vector< std::pair >::iterator it=partCompactFormat.begin();it!=partCompactFormat.end();it++,i++) + { + if(st[i]st[i]) + { + (*it).first-=(*it).second-st[i]; + (*it).second=st[i]; + } + } } + ExtractFieldOfBoolFrom(st,crit,partCompactFormat,reducedCrit); + return ret; +} + +/*! + * This method is \b NOT wrapped in python. + * This method considers \a crit input parameter as a matrix having dimensions specified by \a st. This method returns for each axis + * the signature, that is to say the number of elems equal to true in \a crit along this axis. + */ +std::vector< std::vector > MEDCouplingStructuredMesh::ComputeSignaturePerAxisOf(const std::vector& st, const std::vector& crit) +{ + std::size_t dim(st.size()); + std::vector< std::vector > ret(dim); + switch(dim) + { + case 1: + { + mcIdType nx(st[0]); + ret[0].resize(nx); + std::vector& retX(ret[0]); + for(mcIdType i=0;i& retX(ret[0]); + for(mcIdType i=0;i& retY(ret[1]); + for(mcIdType j=0;j& retX(ret[0]); + for(mcIdType i=0;i& retY(ret[1]); + for(mcIdType j=0;j& retZ(ret[2]); + for(mcIdType k=0;k conn(DataArrayInt::New()); + mcIdType nbOfCells=*nodeStBg-1; + MCAuto conn(DataArrayIdType::New()); conn->alloc(2*nbOfCells,1); - int *cp=conn->getPointer(); - for(int i=0;igetPointer(); + for(mcIdType i=0;i conn(DataArrayInt::New()); + mcIdType n1(nodeStBg[0]-1),n2(nodeStBg[1]-1); + MCAuto conn(DataArrayIdType::New()); conn->alloc(4*n1*n2,1); - int *cp=conn->getPointer(); - int pos=0; - for(int j=0;jgetPointer()); + std::size_t pos(0); + for(mcIdType j=0;j conn(DataArrayInt::New()); + mcIdType n1(nodeStBg[0]-1),n2(nodeStBg[1]-1),n3(nodeStBg[2]-1); + MCAuto conn(DataArrayIdType::New()); conn->alloc(8*n1*n2*n3,1); - int *cp=conn->getPointer(); - int pos=0; - for(int k=0;kgetPointer()); + std::size_t pos(0); + for(mcIdType k=0;k()); - return std::accumulate(tmp,tmp+meshDim,0); + std::vector ngs(3); + mcIdType n0(nodeStBg[0]-1),n1(nodeStBg[1]-1),n2(nodeStBg[2]-1); ngs[0]=n0; ngs[1]=n1; ngs[2]=n2; + mcIdType off0(nodeStBg[0]),off1(nodeStBg[0]*nodeStBg[1]); + MCAuto conn(DataArrayIdType::New()); + conn->alloc(4*GetNumberOfCellsOfSubLevelMesh(ngs,3)); + mcIdType *cp(conn->getPointer()); + //X + for(mcIdType i=0;i& st, const std::vector& crit, std::vector< std::pair >& partCompactFormat) { - int tmp[3]={i,j,k}; - int tmp2[3]; - int spaceDim(getSpaceDimension()); - getSplitNodeValues(tmp2); - std::transform(tmp,tmp+spaceDim,tmp2,tmp,std::multiplies()); - return std::accumulate(tmp,tmp+spaceDim,0); + if(st.size()!=1) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::FindMinimalPartOf1D : the input size of st must be equal to 1 !"); + mcIdType nxMin(std::numeric_limits::max()),nxMax(-std::numeric_limits::max()); + mcIdType nx(st[0]),ret(0); + for(mcIdType i=0;i& st, const std::vector& crit, std::vector< std::pair >& partCompactFormat) { - int work=nodeId; - for(int i=meshDim-1;i>=0;i--) + if(st.size()!=2) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::FindMinimalPartOf2D : the input size of st must be equal to 2 !"); + mcIdType nxMin(std::numeric_limits::max()),nxMax(-std::numeric_limits::max()),nyMin(std::numeric_limits::max()),nyMax(-std::numeric_limits::max()); + mcIdType it(0),nx(st[0]),ny(st[1]); + mcIdType ret(0); + for(mcIdType i=0;i MEDCouplingStructuredMesh::getCellGridStructure() const +/*! + * \sa MEDCouplingStructuredMesh::FindMinimalPartOf + */ +mcIdType MEDCouplingStructuredMesh::FindMinimalPartOf3D(const std::vector& st, const std::vector& crit, std::vector< std::pair >& partCompactFormat) { - std::vector ret(getNodeGridStructure()); - std::transform(ret.begin(),ret.end(),ret.begin(),std::bind2nd(std::plus(),-1)); + if(st.size()!=3) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::FindMinimalPartOf3D : the input size of st must be equal to 3 !"); + mcIdType nxMin(std::numeric_limits::max()),nxMax(-std::numeric_limits::max()),nyMin(std::numeric_limits::max()),nyMax(-std::numeric_limits::max()),nzMin(std::numeric_limits::max()),nzMax(-std::numeric_limits::max()); + mcIdType it(0),nx(st[0]),ny(st[1]),nz(st[2]); + mcIdType ret(0); + for(mcIdType i=0;i& st, std::vector< std::pair >& partCompactFormat) +int MEDCouplingStructuredMesh::ZipNodeStructure(const mcIdType *nodeStBg, const mcIdType *nodeStEnd, mcIdType zipNodeSt[3]) { - int dim((int)st.size()); + std::size_t spaceDim(std::distance(nodeStBg,nodeStEnd)); + if(spaceDim>3 || spaceDim<1) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ZipNodeStructure : spaceDim must in [1,2,3] !"); + zipNodeSt[0]=0; zipNodeSt[1]=0; zipNodeSt[2]=0; + int zippedI(0); + for(std::size_t i=0;i=2) + zipNodeSt[zippedI++]=elt; + } + return zippedI; +} + +DataArrayIdType *MEDCouplingStructuredMesh::Build1GTNodalConnectivityOfSubLevelMesh2D(const mcIdType *nodeStBg) +{ + std::vector ngs(2); + mcIdType n0(nodeStBg[0]-1),n1(nodeStBg[1]-1); ngs[0]=n0; ngs[1]=n1; + mcIdType off0(nodeStBg[0]); + MCAuto conn(DataArrayIdType::New()); + conn->alloc(2*GetNumberOfCellsOfSubLevelMesh(ngs,2)); + mcIdType *cp(conn->getPointer()); + //X + for(mcIdType i=0;i()); + return std::accumulate(tmp,tmp+meshDim,0); +} + +/*! + * Returns a node id by its (i,j,k) index. + * \param [in] i - a index of node coordinates array along X axis. + * \param [in] j - a index of node coordinates array along Y axis. + * \param [in] k - a index of node coordinates array along Z axis. + * \return mcIdType - a node id in \a this mesh. + */ +mcIdType MEDCouplingStructuredMesh::getNodeIdFromPos(mcIdType i, mcIdType j, mcIdType k) const +{ + mcIdType tmp[3]={i,j,k}; + mcIdType tmp2[3]; + mcIdType spaceDim(getSpaceDimension()); + getSplitNodeValues(tmp2); + std::transform(tmp,tmp+spaceDim,tmp2,tmp,std::multiplies()); + return std::accumulate(tmp,tmp+spaceDim,0); +} + + +mcIdType MEDCouplingStructuredMesh::getNumberOfCells() const +{ + std::vector ngs(getNodeGridStructure()); + mcIdType ret(1); + bool isCatched(false); + std::size_t ii(0); + for(std::vector::const_iterator it=ngs.begin();it!=ngs.end();it++,ii++) + { + mcIdType elt(*it); + if(elt<=0) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::getNumberOfCells : at pos #" << ii << " the number of nodes in nodeStructure is " << *it << " ! Must be > 0 !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + if(elt>1) + { + ret*=elt-1; + isCatched=true; + } + } + return isCatched?ret:0; +} + +mcIdType MEDCouplingStructuredMesh::getNumberOfNodes() const +{ + std::vector ngs(getNodeGridStructure()); + mcIdType ret(1); + for(std::vector::const_iterator it=ngs.begin();it!=ngs.end();it++) + ret*=*it; + return ret; +} + +/*! + * This method returns for a cell which id is \a cellId the location (locX,locY,locZ) of this cell in \a this. + * + * \param [in] cellId + * \return - A vector of size this->getMeshDimension() + * \throw if \a cellId not in [ 0, this->getNumberOfCells() ) + */ +std::vector MEDCouplingStructuredMesh::getLocationFromCellId(mcIdType cellId) const +{ + int meshDim(getMeshDimension()); + std::vector ret(meshDim); + std::vector struc(getCellGridStructure()); + mcIdType nbCells(std::accumulate(struc.begin(),struc.end(),1,std::multiplies())); + if(cellId<0 || cellId>=nbCells) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::getLocationFromCellId : Input cell id (" << cellId << ") is invalid ! Should be in [0," << nbCells << ") !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + std::vector spt(GetSplitVectFromStruct(struc)); + GetPosFromId(cellId,meshDim,&spt[0],&ret[0]); + return ret; +} + +/*! + * This method returns for a node which id is \a nodeId the location (locX,locY,locZ) of this node in \a this. + * + * \param [in] nodeId + * \return - A vector of size this->getSpaceDimension() + * \throw if \a cellId not in [ 0, this->getNumberOfNodes() ) + */ +std::vector MEDCouplingStructuredMesh::getLocationFromNodeId(mcIdType nodeId) const +{ + int spaceDim(getSpaceDimension()); + std::vector ret(spaceDim); + std::vector struc(getNodeGridStructure()); + mcIdType nbNodes(std::accumulate(struc.begin(),struc.end(),1,std::multiplies())); + if(nodeId<0 || nodeId>=nbNodes) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::getLocationFromNodeId : Input node id (" << nodeId << ") is invalid ! Should be in [0," << nbNodes << ") !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + std::vector spt(GetSplitVectFromStruct(struc)); + GetPosFromId(nodeId,spaceDim,&spt[0],&ret[0]); + return ret; +} + +void MEDCouplingStructuredMesh::GetPosFromId(mcIdType eltId, int meshDim, const mcIdType *split, mcIdType *res) +{ + mcIdType work(eltId); + for(int i=meshDim-1;i>=0;i--) + { + mcIdType pos=work/split[i]; + work=work%split[i]; + res[i]=pos; + } +} + +std::vector MEDCouplingStructuredMesh::getCellGridStructure() const +{ + std::vector ret(getNodeGridStructure()); + std::transform(ret.begin(),ret.end(),ret.begin(),std::bind2nd(std::plus(),-1)); + return ret; +} + +/*! + * This method returns the squareness of \a this (quadrature). \a this is expected to be with a mesh dimension equal to 2 or 3. + */ +double MEDCouplingStructuredMesh::computeSquareness() const +{ + std::vector cgs(getCellGridStructure()); + if(cgs.empty()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::computeSquareness : empty mesh !"); + std::size_t dim(cgs.size()); + if(dim==1) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::computeSquareness : A segment cannot be square !"); + if(dim<4) + { + mcIdType minAx(cgs[0]),maxAx(cgs[0]); + for(std::size_t i=1;i MEDCouplingStructuredMesh::GetSplitVectFromStruct(const std::vector& strct) +{ + std::size_t spaceDim(strct.size()); + std::vector res(spaceDim); + for(std::size_t l=0;l& st, std::vector< std::pair >& partCompactFormat) +{ + int dim((int)st.size()); partCompactFormat.resize(dim); if(dim<1 || dim>3) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::isPartStructured : input structure must be of dimension in [1,2,3] !"); - std::vector tmp2(dim),tmp(dim),tmp3(dim),tmp4(dim); tmp2[0]=1; + std::vector tmp2(dim),tmp(dim),tmp3(dim),tmp4(dim); tmp2[0]=1; for(int i=1;i=st[i]) @@ -711,20 +1419,20 @@ bool MEDCouplingStructuredMesh::IsPartStructured(const int *startIds, const int return false; szExp*=tmp4[i]; } - if(szExp!=(int)sz) + if(szExp!=ToIdType(sz)) return false; - const int *w(startIds); + const mcIdType *w(startIds); switch(dim) - { + { case 3: { - for(int i=0;i MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(const std::vector< std::pair >& partCompactFormat) +{ + std::vector ret(partCompactFormat.size()); + for(std::size_t i=0;ipartCompactFormat[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt : For axis #" << i << " end is before start !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + ret[i]=partCompactFormat[i].second-partCompactFormat[i].first; + } + return ret; +} + +/*! + * This method takes in input a vector giving the number of entity per axis and returns for each axis a range starting from [0,0...] + * + * \throw if there is an axis in \a dims that is < 0. + * \sa GetDimensionsFromCompactFrmt, ChangeReferenceFromGlobalOfCompactFrmt, ChangeReferenceToGlobalOfCompactFrmt + */ +std::vector< std::pair > MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(const std::vector& dims) +{ + std::size_t sz(dims.size()); + std::vector< std::pair > ret(sz); + for(std::size_t i=0;i > MEDCouplingStructuredMesh::IntersectRanges(const std::vector< std::pair >& r1, const std::vector< std::pair >& r2) +{ + std::size_t sz(r1.size()); + if(sz!=r2.size()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::IntersectRanges : the two ranges must have the same dimension !"); + std::vector< std::pair > ret(sz); + for(std::size_t i=0;ir1[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::IntersectRanges : On axis " << i << " of range r1, end is before start !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + if(r2[i].first>r2[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::IntersectRanges : On axis " << i << " of range r2, end is before start !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + ret[i].first=std::max(r1[i].first,r2[i].first); + ret[i].second=std::min(r1[i].second,r2[i].second); + if(ret[i].first>ret[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::IntersectRanges : On axis " << i << " the intersection of r1 and r2 is empty !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + } + return ret; +} + +/*! + * This method states if \a r1 and \a r2 do overlap of not. If yes you can call IntersectRanges to know the intersection area. + * + * \sa IntersectRanges + */ +bool MEDCouplingStructuredMesh::AreRangesIntersect(const std::vector< std::pair >& r1, const std::vector< std::pair >& r2) +{ + std::size_t sz(r1.size()); + if(sz!=r2.size()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::AreRangesIntersect : the two ranges must have the same dimension !"); + for(std::size_t i=0;ir1[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::AreRangesIntersect : On axis " << i << " of range r1, end is before start !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + if(r2[i].first>r2[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::AreRangesIntersect : On axis " << i << " of range r2, end is before start !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + if(r1[i].second<=r2[i].first) + return false; + if(r1[i].first>=r2[i].second) + return false; + } + return true; +} + +/*! + * This method is close to BuildExplicitIdsFrom except that instead of returning a DataArrayIdType instance containing explicit ids it + * enable elems in the vector of booleans (for performance reasons). As it is method for performance, this method is \b not + * available in python. + * + * \param [in] st The entity structure. + * \param [in] partCompactFormat The compact subpart to be enabled. + * \param [in,out] vectToSwitchOn Vector which fetched items are enabled. + * + * \sa MEDCouplingStructuredMesh::BuildExplicitIdsFrom, ExtractFieldOfBoolFrom + */ +void MEDCouplingStructuredMesh::SwitchOnIdsFrom(const std::vector& st, const std::vector< std::pair >& partCompactFormat, std::vector& vectToSwitchOn) +{ + if(st.size()!=partCompactFormat.size()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::SwitchOnIdsFrom : input arrays must have the same size !"); + if(ToIdType(vectToSwitchOn.size())!=DeduceNumberOfGivenStructure(st)) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::SwitchOnIdsFrom : invalid size of input vector of boolean regarding the structure !"); + std::vector dims(GetDimensionsFromCompactFrmt(partCompactFormat)); + switch(st.size()) + { + case 3: + { + for(mcIdType i=0;i& st, const std::vector& fieldOfBool, const std::vector< std::pair >& partCompactFormat, std::vector& fieldOut) +{ + if(st.size()!=partCompactFormat.size()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ExtractFieldOfBoolFrom : input arrays must have the same size !"); + if(ToIdType(fieldOfBool.size())!=DeduceNumberOfGivenStructure(st)) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ExtractFieldOfBoolFrom : invalid size of input field of boolean regarding the structure !"); + std::vector dims(GetDimensionsFromCompactFrmt(partCompactFormat)); + mcIdType nbOfTuplesOfOutField(DeduceNumberOfGivenStructure(dims)); + fieldOut.resize(nbOfTuplesOfOutField); + mcIdType it(0); + switch(st.size()) + { + case 3: + { + for(mcIdType i=0;i& st, const DataArrayDouble *fieldOfDbl, const std::vector< std::pair >& partCompactFormat) +{ + if(!fieldOfDbl || !fieldOfDbl->isAllocated()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom : input array of double is NULL or not allocated!"); + if(st.size()!=partCompactFormat.size()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom : input arrays must have the same size !"); + if(fieldOfDbl->getNumberOfTuples()!=DeduceNumberOfGivenStructure(st)) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom : invalid size of input array of double regarding the structure !"); + std::vector dims(GetDimensionsFromCompactFrmt(partCompactFormat)); + mcIdType nbOfTuplesOfOutField(DeduceNumberOfGivenStructure(dims)); + std::size_t nbComp(fieldOfDbl->getNumberOfComponents()); + MCAuto ret(DataArrayDouble::New()); ret->alloc(nbOfTuplesOfOutField,nbComp); + ret->copyStringInfoFrom(*fieldOfDbl); + double *ptRet(ret->getPointer()); + const double *fieldOfDblPtr(fieldOfDbl->begin()); + switch(st.size()) + { + case 3: + { + for(mcIdType i=0;i& st, DataArrayDouble *fieldOfDbl, const std::vector< std::pair >& partCompactFormat, const DataArrayDouble *other) +{//to be optimized + std::vector facts(st.size(),1); + MEDCouplingIMesh::CondenseFineToCoarse(st,other,partCompactFormat,facts,fieldOfDbl); +} + +/*! + * This method changes the reference of a part of structured mesh \a partOfBigInAbs define in absolute reference to a new reference \a bigInAbs. + * So this method only performs a translation by doing \a partOfBigRelativeToBig = \a partOfBigInAbs - \a bigInAbs + * This method also checks (if \a check=true) that \a partOfBigInAbs is included in \a bigInAbs. + * This method is useful to extract a part from a field lying on a big mesh. + * + * \sa ChangeReferenceToGlobalOfCompactFrmt, BuildExplicitIdsFrom, SwitchOnIdsFrom, ExtractFieldOfBoolFrom, ExtractFieldOfDoubleFrom + */ +void MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(const std::vector< std::pair >& bigInAbs, const std::vector< std::pair >& partOfBigInAbs, std::vector< std::pair >& partOfBigRelativeToBig, bool check) +{ + std::size_t dim(bigInAbs.size()); + if(dim!=partOfBigInAbs.size()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt : The size of parts (dimension) must be the same !"); + partOfBigRelativeToBig.resize(dim); + for(std::size_t i=0;ibigInAbs[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt : Error at axis #" << i << " the input big part invalid, end before start !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + if(partOfBigInAbs[i].first=bigInAbs[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt : Error at axis #" << i << " the part is not included in the big one (start) !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + } + partOfBigRelativeToBig[i].first=partOfBigInAbs[i].first-bigInAbs[i].first; + if(check) + { + if(partOfBigInAbs[i].secondbigInAbs[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt : Error at axis #" << i << " the part is not included in the big one (end) !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + } + partOfBigRelativeToBig[i].second=partOfBigInAbs[i].second-bigInAbs[i].first; } } +/* + * This method is performs the opposite reference modification than explained in ChangeReferenceFromGlobalOfCompactFrmt. + * + * \sa ChangeReferenceFromGlobalOfCompactFrmt + */ +void MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt(const std::vector< std::pair >& bigInAbs, const std::vector< std::pair >& partOfBigRelativeToBig, std::vector< std::pair >& partOfBigInAbs, bool check) +{ + std::size_t dim(bigInAbs.size()); + if(dim!=partOfBigRelativeToBig.size()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt : The size of parts (dimension) must be the same !"); + partOfBigInAbs.resize(dim); + for(std::size_t i=0;ibigInAbs[i].second) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt : Error at axis #" << i << " the input big part invalid, end before start !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + if(partOfBigRelativeToBig[i].first<0 || partOfBigRelativeToBig[i].first>=bigInAbs[i].second-bigInAbs[i].first) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt : Error at axis #" << i << " the start of part is not in the big one !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + } + partOfBigInAbs[i].first=partOfBigRelativeToBig[i].first+bigInAbs[i].first; + if(check) + { + if(partOfBigRelativeToBig[i].secondbigInAbs[i].second-bigInAbs[i].first) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt : Error at axis #" << i << " the end of part is not in the big one !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + } + partOfBigInAbs[i].second=partOfBigRelativeToBig[i].second+bigInAbs[i].first; + } +} + +/*! + * This method performs a translation (defined by \a translation) of \a part and returns the result of translated part. + * + * \sa FindTranslationFrom + */ +std::vector< std::pair > MEDCouplingStructuredMesh::TranslateCompactFrmt(const std::vector< std::pair >& part, const std::vector& translation) +{ + std::size_t sz(part.size()); + if(translation.size()!=sz) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::TranslateCompactFrmt : the sizes are not equal !"); + std::vector< std::pair > ret(sz); + for(std::size_t i=0;i MEDCouplingStructuredMesh::FindTranslationFrom(const std::vector< std::pair >& startingFrom, const std::vector< std::pair >& goingTo) +{ + std::size_t sz(startingFrom.size()); + if(goingTo.size()!=sz) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::FindTranslationFrom : the sizes are not equal !"); + std::vector< mcIdType > ret(sz); + for(std::size_t i=0;i& st, const std::vector< std::pair >& partCompactFormat) +DataArrayIdType *MEDCouplingStructuredMesh::BuildExplicitIdsFrom(const std::vector& st, const std::vector< std::pair >& partCompactFormat) { if(st.size()!=partCompactFormat.size()) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::BuildExplicitIdsFrom : input arrays must have the same size !"); - int nbOfItems(1); - std::vector dims(st.size()); + mcIdType nbOfItems(1); + std::vector dims(st.size()); for(std::size_t i=0;ist[i]) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::BuildExplicitIdsFrom : invalid input range 1 !"); if(partCompactFormat[i].second<0 || partCompactFormat[i].second>st[i]) throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::BuildExplicitIdsFrom : invalid input range 2 !"); - if(partCompactFormat[i].second<=partCompactFormat[i].first) + if(partCompactFormat[i].second ret(DataArrayInt::New()); + MCAuto ret(DataArrayIdType::New()); ret->alloc(nbOfItems,1); - int *pt(ret->getPointer()); + mcIdType *pt(ret->getPointer()); switch(st.size()) - { + { case 3: { - for(int i=0;i& st, const std::vector< std::pair >& part, double factor, DataArrayDouble *da) +{ + if(!da || !da->isAllocated()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::MultiplyPartOf : DataArrayDouble instance must be not NULL and allocated !"); + if(st.size()!=part.size()) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::MultiplyPartOf : input arrays must have the same size !"); + std::vector dims(st.size()); + for(std::size_t i=0;ist[i]) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::MultiplyPartOf : invalid input range 1 !"); + if(part[i].second<0 || part[i].second>st[i]) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::MultiplyPartOf : invalid input range 2 !"); + if(part[i].secondgetNumberOfComponents()); + if(da->getNumberOfTuples()!=nbOfTuplesExp) + { + std::ostringstream oss; oss << "MEDCouplingStructuredMesh::MultiplyPartOf : invalid nb of tuples ! Expected " << nbOfTuplesExp << " having " << da->getNumberOfTuples() << " !"; + throw INTERP_KERNEL::Exception(oss.str().c_str()); + } + double *pt(da->getPointer()); + switch(st.size()) + { + case 3: + { + for(mcIdType i=0;i(),factor)); + } + } + } + break; + } + case 2: + { + for(mcIdType j=0;j(),factor)); + } + } + break; + } + case 1: + { + for(mcIdType k=0;k(),factor)); + } + break; + } + default: + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::MultiplyPartOf : Dimension supported are 1,2 or 3 !"); + } +} + +/*! + * This method multiplies by \a factor values in tuples located by \a part in \a da. + * + * \param [in] st - the structure of grid ( \b without considering ghost cells). + * \param [in] part - the part in the structure ( \b without considering ghost cells) contained in grid whose structure is defined by \a st. + * \param [in] ghostSize - \a ghostSize must be >= 0. + * \param [in] factor - the factor, the tuples in \a da will be multiply by. + * \param [in,out] da - The DataArray in which only tuples specified by \a part will be modified. + * + * \sa MultiplyPartOf, PutInGhostFormat + */ +void MEDCouplingStructuredMesh::MultiplyPartOfByGhost(const std::vector& st, const std::vector< std::pair >& part, mcIdType ghostSize, double factor, DataArrayDouble *da) +{ + std::vector stWG; + std::vector< std::pair > partWG; + PutInGhostFormat(ghostSize,st,part,stWG,partWG); + MultiplyPartOf(stWG,partWG,factor,da); +} + +/*! + * This method multiplies by \a factor values in tuples located by \a part in \a da. + * + * \param [in] st - the structure of grid ( \b without considering ghost cells). + * \param [in] part - the part in the structure ( \b without considering ghost cells) contained in grid whose structure is defined by \a st. + * \param [in] ghostSize - \a ghostSize must be >= 0. + * \param [out] stWithGhost - the structure considering ghost cells. + * \param [out] partWithGhost - the part considering the ghost cells. + * + * \sa MultiplyPartOf, PutInGhostFormat + */ +void MEDCouplingStructuredMesh::PutInGhostFormat(mcIdType ghostSize, const std::vector& st, const std::vector< std::pair >& part, std::vector& stWithGhost, std::vector< std::pair >&partWithGhost) +{ + if(ghostSize<0) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::PutInGhostFormat : ghost size must be >= 0 !"); + std::size_t dim(part.size()); + if(st.size()!=dim) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::PutInGhostFormat : the dimension of input vectors must be the same !"); + for(std::size_t i=0;ipart[i].second || part[i].second>st[i]) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::PutInGhostFormat : the specified part is invalid ! The begin must be >= 0 and <= end ! The end must be <= to the size at considered dimension !"); + stWithGhost.resize(st.size()); + std::transform(st.begin(),st.end(),stWithGhost.begin(),std::bind2nd(std::plus(),2*ghostSize)); + partWithGhost=part; + ApplyGhostOnCompactFrmt(partWithGhost,ghostSize); +} + +/*! + * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference. + * \param [in] ghostSize - the ghost size of zone for all axis. + */ +void MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(std::vector< std::pair >& partBeforeFact, mcIdType ghostSize) +{ + if(ghostSize<0) + throw INTERP_KERNEL::Exception("MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt : ghost size must be >= 0 !"); + std::size_t sz(partBeforeFact.size()); + for(std::size_t i=0;i& cgs, int mdim) +{ + mcIdType ret(0); + for(int i=0;i