X-Git-Url: http://git.salome-platform.org/gitweb/?a=blobdiff_plain;f=src%2FMEDCoupling%2FMEDCouplingCartesianAMRMesh.hxx;h=4e8f110c7c35d4e018b0ee80cfe099c09394bc77;hb=af8a6b836ed960509fcb2d719d7396c187dfbf2b;hp=46cee80fc78492df082a62c8f1a206b630c6a269;hpb=2071ee6120854363d465e0310f47551248257685;p=tools%2Fmedcoupling.git diff --git a/src/MEDCoupling/MEDCouplingCartesianAMRMesh.hxx b/src/MEDCoupling/MEDCouplingCartesianAMRMesh.hxx index 46cee80fc..4e8f110c7 100644 --- a/src/MEDCoupling/MEDCouplingCartesianAMRMesh.hxx +++ b/src/MEDCoupling/MEDCouplingCartesianAMRMesh.hxx @@ -1,4 +1,4 @@ -// Copyright (C) 2007-2014 CEA/DEN, EDF R&D +// Copyright (C) 2007-2020 CEA/DEN, EDF R&D // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public @@ -24,39 +24,107 @@ #include "MEDCoupling.hxx" #include "MEDCouplingTimeLabel.hxx" #include "MEDCouplingRefCountObject.hxx" -#include "MEDCouplingAutoRefCountObjectPtr.hxx" +#include "MCAuto.hxx" +#include "MCType.hxx" +#include "BoxSplittingOptions.hxx" #include "InterpKernelException.hxx" -namespace ParaMEDMEM +namespace MEDCoupling { class MEDCouplingIMesh; class MEDCouplingUMesh; + class DataArrayIdType; + class DataArrayByte; + class DataArrayDouble; + class MEDCoupling1SGTUMesh; + class MEDCouplingFieldDouble; class MEDCouplingCartesianAMRMesh; + class MEDCouplingCartesianAMRMeshGen; /// @cond INTERNAL - class MEDCouplingCartesianAMRPatch : public RefCountObject + + /*! + * This class does not inherit from TimeLabel so only const method should exist. + */ + class MEDCouplingCartesianAMRPatchGen : public RefCountObject + { + public: + MEDCOUPLING_EXPORT virtual MEDCouplingCartesianAMRPatchGen *deepCopy(MEDCouplingCartesianAMRMeshGen *father) const = 0; + MEDCOUPLING_EXPORT mcIdType getNumberOfCellsRecursiveWithOverlap() const; + MEDCOUPLING_EXPORT mcIdType getNumberOfCellsRecursiveWithoutOverlap() const; + MEDCOUPLING_EXPORT mcIdType getMaxNumberOfLevelsRelativeToThis() const; + MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getMesh() const { return _mesh; } + protected: + MEDCouplingCartesianAMRPatchGen(const MEDCouplingCartesianAMRPatchGen& other, MEDCouplingCartesianAMRMeshGen *father); + MEDCouplingCartesianAMRPatchGen(MEDCouplingCartesianAMRMeshGen *mesh); + const MEDCouplingCartesianAMRMeshGen *getMeshSafe() const; + MEDCouplingCartesianAMRMeshGen *getMeshSafe(); + private: + std::vector getDirectChildrenWithNull() const; + protected: + MCAuto _mesh; + }; + + /*! + * This class does not inherit from TimeLabel so only const method should exist. + */ + class MEDCouplingCartesianAMRPatch : public MEDCouplingCartesianAMRPatchGen { public: - MEDCouplingCartesianAMRPatch(MEDCouplingCartesianAMRMesh *mesh, const std::vector< std::pair >& bottomLeftTopRight); + MEDCouplingCartesianAMRPatch(MEDCouplingCartesianAMRMeshGen *mesh, const std::vector< std::pair >& bottomLeftTopRight); + std::string getClassName() const override { return std::string("MEDCouplingCartesianAMRPatch"); } + MEDCouplingCartesianAMRPatch *deepCopy(MEDCouplingCartesianAMRMeshGen *father) const; // direct forward to _mesh - MEDCOUPLING_EXPORT int getNumberOfCellsRecursiveWithOverlap() const; - MEDCOUPLING_EXPORT int getNumberOfCellsRecursiveWithoutOverlap() const; - MEDCOUPLING_EXPORT int getMaxNumberOfLevelsRelativeToThis() const; - MEDCOUPLING_EXPORT void addPatch(const std::vector< std::pair >& bottomLeftTopRight, int factor); + MEDCOUPLING_EXPORT void addPatch(const std::vector< std::pair >& bottomLeftTopRight, const std::vector& factors); // end of direct forward to _mesh - MEDCOUPLING_EXPORT int getNumberOfOverlapedCellsForFather() const; + MEDCOUPLING_EXPORT mcIdType getNumberOfOverlapedCellsForFather() const; + MEDCOUPLING_EXPORT bool isInMyNeighborhood(const MEDCouplingCartesianAMRPatch *other, mcIdType ghostLev) const; + MEDCOUPLING_EXPORT bool isInMyNeighborhoodExt(const MEDCouplingCartesianAMRPatch *other, mcIdType ghostLev) const; + MEDCOUPLING_EXPORT bool isInMyNeighborhoodDiffLev(const MEDCouplingCartesianAMRPatch *other, mcIdType ghostLev) const; // basic set/get - MEDCOUPLING_EXPORT const std::vector< std::pair >& getBLTRRange() const { return _bl_tr; } - MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMesh *getMesh() const { return _mesh; } + MEDCOUPLING_EXPORT const std::vector< std::pair >& getBLTRRange() const { return _bl_tr; } + MEDCOUPLING_EXPORT std::vector< std::pair > getBLTRRangeRelativeToGF() const; + MEDCOUPLING_EXPORT std::vector computeCellGridSt() const; + MEDCOUPLING_EXPORT static bool IsInMyNeighborhood(mcIdType ghostLev, const std::vector< std::pair >& p1, const std::vector< std::pair >& p2); + // + static std::vector< std::vector< std::pair > > FindNeighborsOfSubPatchesOfSameLev(mcIdType ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2); + static void FindNeighborsOfSubPatchesOf(mcIdType ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, std::vector< std::pair >& ret); + static void UpdateNeighborsOfOneWithTwo(mcIdType ghostLev, const std::vector& factors, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2); + static void UpdateNeighborsOfOneWithTwoExt(mcIdType ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2); + static void UpdateNeighborsOfOneWithTwoMixedLev(mcIdType ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2, bool isConservative); + private: + static void ComputeZonesOfTwoRelativeToOneDiffLev(mcIdType ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, std::vector< std::pair >& p1Zone, std::vector< std::pair >& p2Zone, std::vector& factToApplyOn2); private: std::size_t getHeapMemorySizeWithoutChildren() const; - std::vector getDirectChildren() const; + static const MEDCouplingCartesianAMRMeshGen *FindCommonAncestor(const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, mcIdType& lev); + static std::vector ComputeOffsetFromTwoToOne(const MEDCouplingCartesianAMRMeshGen *comAncestor, mcIdType lev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2); + static void UpdateNeighborsOfOneWithTwoInternal(mcIdType ghostLev, const std::vector& factors, const std::vector< std::pair >&p1 ,const std::vector< std::pair >&p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2); + public: + static void ApplyFactorsOnCompactFrmt(std::vector< std::pair >& partBeforeFact, const std::vector& factors); + static void ApplyAllGhostOnCompactFrmt(std::vector< std::pair >& partBeforeFact, mcIdType ghostSize); + private: + MEDCouplingCartesianAMRPatch(const MEDCouplingCartesianAMRPatch& other, MEDCouplingCartesianAMRMeshGen *father); private: //! bottom left/top right cell range relative to \a _father - std::vector< std::pair > _bl_tr; - MEDCouplingAutoRefCountObjectPtr _mesh; + std::vector< std::pair > _bl_tr; + }; + + /*! + * This class does not inherit from TimeLabel so only const method should exist. + */ + class MEDCouplingCartesianAMRPatchGF : public MEDCouplingCartesianAMRPatchGen + { + public: + MEDCouplingCartesianAMRPatchGF(MEDCouplingCartesianAMRMesh *mesh); + std::string getClassName() const override { return std::string("MEDCouplingCartesianAMRPatchGF"); } + MEDCouplingCartesianAMRPatchGF *deepCopy(MEDCouplingCartesianAMRMeshGen *father) const; + private: + std::size_t getHeapMemorySizeWithoutChildren() const; + private: + MEDCouplingCartesianAMRPatchGF(const MEDCouplingCartesianAMRPatchGF& other, MEDCouplingCartesianAMRMeshGen *father); }; + /// @endcond /*! @@ -64,39 +132,130 @@ namespace ParaMEDMEM * This class does \b NOT inherit from MEDCouplingMesh because this class overlaps image grid structured meshes to perform adaptative mesh refinement. * But this class aggregates MEDCouplingMesh instances ! */ - class MEDCouplingCartesianAMRMesh : public RefCountObject, public TimeLabel + class MEDCouplingCartesianAMRMeshGen : public RefCountObject, public TimeLabel { public: - MEDCOUPLING_EXPORT static MEDCouplingCartesianAMRMesh *New(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop, - const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop); + MEDCOUPLING_EXPORT virtual MEDCouplingCartesianAMRMeshGen *deepCopy(MEDCouplingCartesianAMRMeshGen *father) const = 0; MEDCOUPLING_EXPORT int getSpaceDimension() const; - MEDCOUPLING_EXPORT int getMaxNumberOfLevelsRelativeToThis() const; - MEDCOUPLING_EXPORT int getNumberOfCellsAtCurrentLevel() const; - MEDCOUPLING_EXPORT int getNumberOfCellsRecursiveWithOverlap() const; - MEDCOUPLING_EXPORT int getNumberOfCellsRecursiveWithoutOverlap() const; + MEDCOUPLING_EXPORT const std::vector& getFactors() const { return _factors; } + MEDCOUPLING_EXPORT void setFactors(const std::vector& newFactors); + MEDCOUPLING_EXPORT mcIdType getMaxNumberOfLevelsRelativeToThis() const; + MEDCOUPLING_EXPORT mcIdType getNumberOfCellsAtCurrentLevel() const; + MEDCOUPLING_EXPORT mcIdType getNumberOfCellsAtCurrentLevelGhost(mcIdType ghostLev) const; + MEDCOUPLING_EXPORT mcIdType getNumberOfCellsRecursiveWithOverlap() const; + MEDCOUPLING_EXPORT mcIdType getNumberOfCellsRecursiveWithoutOverlap() const; + MEDCOUPLING_EXPORT const MEDCouplingIMesh *getImageMesh() const { return _mesh; } // - MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMesh *getFather() const; - MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMesh *getGodFather() const; - MEDCOUPLING_EXPORT void detachFromFather(); - MEDCOUPLING_EXPORT void addPatch(const std::vector< std::pair >& bottomLeftTopRight, int factor); - MEDCOUPLING_EXPORT void removePatch(int patchId); - MEDCOUPLING_EXPORT int getNumberOfPatches() const; - MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRPatch *getPatch(int patchId) const; + MEDCOUPLING_EXPORT virtual const MEDCouplingCartesianAMRMeshGen *getFather() const = 0; + MEDCOUPLING_EXPORT virtual const MEDCouplingCartesianAMRMeshGen *getGodFather() const = 0; + MEDCOUPLING_EXPORT virtual mcIdType getAbsoluteLevel() const = 0; + MEDCOUPLING_EXPORT virtual void detachFromFather() = 0; + MEDCOUPLING_EXPORT virtual std::vector< std::pair > positionRelativeToGodFather(std::vector& st) const = 0; + MEDCOUPLING_EXPORT virtual mcIdType getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const = 0; + MEDCOUPLING_EXPORT std::vector getPositionRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const; + MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRPatch *getPatchAtPosition(const std::vector& pos) const; + MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getMeshAtPosition(const std::vector& pos) const; + MEDCOUPLING_EXPORT virtual std::vector retrieveGridsAt(mcIdType absoluteLev) const; + MEDCOUPLING_EXPORT void addPatch(const std::vector< std::pair >& bottomLeftTopRight, const std::vector& factors); + MEDCOUPLING_EXPORT void removeAllPatches(); + MEDCOUPLING_EXPORT void removePatch(mcIdType patchId); + MEDCOUPLING_EXPORT mcIdType getNumberOfPatches() const; + MEDCOUPLING_EXPORT void createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const std::vector& criterion, const std::vector& factors); + MEDCOUPLING_EXPORT void createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const DataArrayByte *criterion, const std::vector& factors); + MEDCOUPLING_EXPORT void createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const DataArrayDouble *criterion, const std::vector& factors, double eps); + MEDCOUPLING_EXPORT mcIdType getPatchIdFromChildMesh(const MEDCouplingCartesianAMRMeshGen *mesh) const; + MEDCOUPLING_EXPORT std::vector< const MEDCouplingCartesianAMRPatch *> getPatches() const; + MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRPatch *getPatch(mcIdType patchId) const; + MEDCOUPLING_EXPORT bool isPatchInNeighborhoodOf(mcIdType patchId1, mcIdType patchId2, mcIdType ghostLev) const; + MEDCOUPLING_EXPORT DataArrayDouble *createCellFieldOnPatch(mcIdType patchId, const DataArrayDouble *cellFieldOnThis) const; + // coarse to fine + MEDCOUPLING_EXPORT void fillCellFieldOnPatch(mcIdType patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, bool isConservative=true) const; + MEDCOUPLING_EXPORT void fillCellFieldOnPatchGhost(mcIdType patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, mcIdType ghostLev, bool isConservative=true) const; + MEDCOUPLING_EXPORT void fillCellFieldOnPatchOnlyOnGhostZone(mcIdType patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, mcIdType ghostLev) const; + // coarse to fine + fine to fine + MEDCOUPLING_EXPORT void fillCellFieldOnPatchGhostAdv(mcIdType patchId, const DataArrayDouble *cellFieldOnThis, mcIdType ghostLev, const std::vector& arrsOnPatches, bool isConservative=true) const; + // fine to fine + MEDCOUPLING_EXPORT void fillCellFieldOnPatchOnlyGhostAdv(mcIdType patchId, mcIdType ghostLev, const std::vector& arrsOnPatches) const; + MEDCOUPLING_EXPORT void fillCellFieldOnPatchOnlyOnGhostZoneWith(mcIdType ghostLev, const MEDCouplingCartesianAMRPatch *patchToBeModified, const MEDCouplingCartesianAMRPatch *neighborPatch, DataArrayDouble *cellFieldOnPatch, const DataArrayDouble *cellFieldNeighbor) const; + // fine to coarse + MEDCOUPLING_EXPORT void fillCellFieldComingFromPatch(mcIdType patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, bool isConservative=true) const; + MEDCOUPLING_EXPORT void fillCellFieldComingFromPatchGhost(mcIdType patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, mcIdType ghostLev, bool isConservative=true) const; + // + MEDCOUPLING_EXPORT DataArrayIdType *findPatchesInTheNeighborhoodOf(mcIdType patchId, mcIdType ghostLev) const; // MEDCOUPLING_EXPORT MEDCouplingUMesh *buildUnstructured() const; - private: - MEDCouplingCartesianAMRMesh(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop, - const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop); - MEDCouplingCartesianAMRMesh(MEDCouplingCartesianAMRMesh *father, MEDCouplingIMesh *mesh); - void checkPatchId(int patchId) const; + MEDCOUPLING_EXPORT MEDCoupling1SGTUMesh *buildMeshFromPatchEnvelop() const; + MEDCOUPLING_EXPORT MEDCoupling1SGTUMesh *buildMeshOfDirectChildrenOnly() const; + MEDCOUPLING_EXPORT MEDCouplingFieldDouble *buildCellFieldOnRecurseWithoutOverlapWithoutGhost(mcIdType ghostSz, const std::vector& recurseArrs) const; + MEDCOUPLING_EXPORT DataArrayDouble *extractGhostFrom(mcIdType ghostSz, const DataArrayDouble *arr) const; + MEDCOUPLING_EXPORT std::vector getPatchIdsInTheNeighborhoodOf(mcIdType patchId, mcIdType ghostLev) const; + MEDCOUPLING_EXPORT std::string buildPythonDumpOfThis() const; + protected: + MEDCouplingCartesianAMRMeshGen(const MEDCouplingCartesianAMRMeshGen& other); + MEDCouplingCartesianAMRMeshGen(const std::string& meshName, int spaceDim, const mcIdType *nodeStrctStart, const mcIdType *nodeStrctStop, + const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop); + MEDCouplingCartesianAMRMeshGen(MEDCouplingIMesh *mesh); + void checkPatchId(mcIdType patchId) const; + void checkFactorsAndIfNotSetAssign(const std::vector& factors); + void retrieveGridsAtInternal(mcIdType lev, std::vector< MCAuto >& grids) const; + static mcIdType GetGhostLevelInFineRef(mcIdType ghostLev, const std::vector& factors); + std::vector extractSubTreeFromGlobalFlatten(const MEDCouplingCartesianAMRMeshGen *head, const std::vector& all) const; + void dumpPatchesOf(const std::string& varName, std::ostream& oss) const; + public: + virtual void getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector& ret) const = 0; protected: MEDCOUPLING_EXPORT std::size_t getHeapMemorySizeWithoutChildren() const; - MEDCOUPLING_EXPORT std::vector getDirectChildren() const; + MEDCOUPLING_EXPORT std::vector getDirectChildrenWithNull() const; MEDCOUPLING_EXPORT void updateTime() const; + protected: + MCAuto _mesh; + std::vector< MCAuto > _patches; + std::vector _factors; + }; + + class MEDCouplingCartesianAMRMeshSub : public MEDCouplingCartesianAMRMeshGen + { + public: + MEDCouplingCartesianAMRMeshSub(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh); + MEDCOUPLING_EXPORT std::string getClassName() const override { return std::string("MEDCouplingCartesianAMRMeshSub"); } + MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getFather() const; + MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getGodFather() const; + MEDCOUPLING_EXPORT mcIdType getAbsoluteLevel() const; + MEDCOUPLING_EXPORT void detachFromFather(); + MEDCOUPLING_EXPORT std::vector< std::pair > positionRelativeToGodFather(std::vector& st) const; + MEDCOUPLING_EXPORT mcIdType getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const; + private: + MEDCouplingCartesianAMRMeshSub(const MEDCouplingCartesianAMRMeshSub& other, MEDCouplingCartesianAMRMeshGen *father); + MEDCouplingCartesianAMRMeshSub *deepCopy(MEDCouplingCartesianAMRMeshGen *father) const; + void getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector& ret) const; + protected: + MEDCouplingCartesianAMRMeshGen *_father; + }; + + class MEDCouplingCartesianAMRMesh : public MEDCouplingCartesianAMRMeshGen + { + public: + MEDCOUPLING_EXPORT static MEDCouplingCartesianAMRMesh *New(const std::string& meshName, int spaceDim, const mcIdType *nodeStrctStart, const mcIdType *nodeStrctStop, + const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop); + MEDCOUPLING_EXPORT static MEDCouplingCartesianAMRMesh *New(MEDCouplingIMesh *mesh); + MEDCOUPLING_EXPORT std::string getClassName() const override { return std::string("MEDCouplingCartesianAMRMesh"); } + MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getFather() const; + MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getGodFather() const; + MEDCOUPLING_EXPORT mcIdType getAbsoluteLevel() const; + MEDCOUPLING_EXPORT void detachFromFather(); + MEDCOUPLING_EXPORT std::vector< std::pair > positionRelativeToGodFather(std::vector& st) const; + MEDCOUPLING_EXPORT mcIdType getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const; + MEDCOUPLING_EXPORT std::vector retrieveGridsAt(mcIdType absoluteLev) const; + MEDCouplingCartesianAMRMesh *deepCopy(MEDCouplingCartesianAMRMeshGen *father) const; + MEDCOUPLING_EXPORT void createPatchesFromCriterionML(const std::vector& bso, const DataArrayDouble *criterion, const std::vector< std::vector >& factors, double eps); private: - MEDCouplingCartesianAMRMesh *_father; - MEDCouplingAutoRefCountObjectPtr _mesh; - std::vector< MEDCouplingAutoRefCountObjectPtr > _patches; + void getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector& ret) const; + MEDCouplingCartesianAMRMesh(const MEDCouplingCartesianAMRMesh& other); + MEDCouplingCartesianAMRMesh(const std::string& meshName, int spaceDim, const mcIdType *nodeStrctStart, const mcIdType *nodeStrctStop, + const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop); + MEDCouplingCartesianAMRMesh(MEDCouplingIMesh *mesh); + MEDCOUPLING_EXPORT std::vector getDirectChildrenWithNull() const; + ~MEDCouplingCartesianAMRMesh(); }; }