X-Git-Url: http://git.salome-platform.org/gitweb/?a=blobdiff_plain;f=CMakeLists.txt;h=c50d4143e1f8f83010ee2f104b2430864ee55bda;hb=405d8e2251234e3bc217f0d3d8ec9c0f49f0418e;hp=9fb3c8ccb808260995e79f139ef5c76b014e9b50;hpb=996f1077afc4864091bed476a9580c224f1178ca;p=tools%2Fsolverlab.git diff --git a/CMakeLists.txt b/CMakeLists.txt index 9fb3c8c..c50d414 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -4,15 +4,17 @@ set(CMAKE_CXX_STANDARD_REQUIRED ON) # Project name project (SOLVERLAB C CXX) -set (SOLVERLAB_VERSION_MAJOR 0) -set (SOLVERLAB_VERSION_MINOR 1) +set (SOLVERLAB_VERSION_MAJOR 9) +set (SOLVERLAB_VERSION_MINOR 7) +set (SOLVERLAB_VERSION_SUBMINOR alpha) option (SOLVERLAB_WITH_DOCUMENTATION "Generate SOLVERLAB documentation" ON) -option (SOLVERLAB_WITH_PYTHON "Compile Python interface of SOLVERLAB" ON) +option (SOLVERLAB_WITH_PYTHON "Generate Python interface of SOLVERLAB using SWIG" ON) option (SOLVERLAB_WITH_GUI "Compile a Graphic user Interface for SOLVERLAB" OFF) option (SOLVERLAB_WITH_PACKAGE "Generate RPM, Debian and tarball packages" OFF) option (SOLVERLAB_WITH_COREFLOWS "Generate COREFLOWS module" ON) option (SOLVERLAB_WITH_TESTS "Generate SOLVERLAB example tests" ON) +option (SOLVERLAB_WITH_MPI "Generate a parallel version of SOLVERLAB" OFF) #Path to installed libraries set (PETSC_DIR OFF CACHE STRING "PETSc library path" ) @@ -21,11 +23,13 @@ set (HDF5_ROOT OFF CACHE STRING "HDF5 library path" )#For the compila set (MEDFILE_ROOT_DIR OFF CACHE STRING "MED library path" ) set (MEDCOUPLING_ROOT_DIR OFF CACHE STRING "MEDCoupling library path" ) set (PYTHON_ROOT_DIR OFF CACHE STRING "Python library path" ) +set (PARAVIEW_ROOT_DIR OFF CACHE STRING "PARAVIEW library path" ) +set (MPI4PY_ROOT_DIR OFF CACHE STRING "MPI4PY library path" ) #url of tarball librairies -set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.14.0.tar.gz +set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.16.0.tar.gz CACHE STRING "PETSc tarball path/url" ) -set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.14.0.tar.gz +set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.16.0.tar.gz CACHE STRING "SLEPC tarball path/url" ) set (DOWNLOAD_F2CBLASLAPACK https://www.mcs.anl.gov/petsc/mirror/externalpackages/f2cblaslapack-3.4.2.q4.tar.gz CACHE STRING "F2CBLASLAPACK tarball path/url" ) @@ -33,14 +37,70 @@ set (DOWNLOAD_HDF5 https://support.hdfgroup.org/ftp/HDF5/releases/hdf5- CACHE STRING "HDF5 tarball path/url" ) set (DOWNLOAD_MED http://files.salome-platform.org/Salome/other/med-4.1.0.tar.gz CACHE STRING "MED tarball path/url") -set (DOWNLOAD_MEDCOUPLING http://files.salome-platform.org/Salome/other/medCoupling-9.4.0.tar.gz +set (DOWNLOAD_MEDCOUPLING http://files.salome-platform.org/Salome/other/medCoupling-9.7.0.tar.gz CACHE STRING "MEDCoupling tarball path/url" ) +set (DOWNLOAD_OPENMPI https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.6.tar.gz + CACHE STRING "OPENMPI tarball path/url" ) +set (DOWNLOAD_HYPRE https://github.com/hypre-space/hypre/archive/v2.23.0.zip + CACHE STRING "HYPRE tarball path/url" ) +set (DOWNLOAD_MPI4PY https://bitbucket.org/mpi4py/mpi4py/downloads/mpi4py-3.1.2.tar.gz + CACHE STRING "MPY4PY tarball path/url" ) set (CMAKE_BUILD_TYPE Release CACHE STRING "Installation mode") +include(ExternalProject)#For PETSc, MED and MEDCoupling + list (APPEND CMAKE_MODULE_PATH "${SOLVERLAB_SOURCE_DIR}/cmake_files") -include(ExternalProject)#For PETSc, MED and MEDCoupling + +##################### +# Detection of MPI # +##################### +if ( DEFINED ENV{MPI_ROOT_DIR} OR DEFINED MPI_ROOT_DIR ) + if ( DEFINED ENV{MPI_ROOT_DIR} ) + set(MPI_HOME $ENV{MPI_ROOT_DIR}) + else ( DEFINED ENV{MPI_ROOT_DIR} ) + set(MPI_HOME ${MPI_ROOT_DIR}) + endif( DEFINED ENV{MPI_ROOT_DIR} ) +endif( DEFINED ENV{MPI_ROOT_DIR} OR DEFINED MPI_ROOT_DIR ) + +# Definition of SOLVERLAB_WITH_MPI +if( DEFINED ENV{MPI_HOME} OR MPI_HOME ) + set(SOLVERLAB_WITH_MPI ON) + find_package(MPI) + if( ${MPI_LIBRARY} STREQUAL "MPI_LIBRARY-NOTFOUND") + set ( MPI_LIBRARY ${MPI_HOME}/lib/libmpi.so ) + endif(${MPI_LIBRARY} STREQUAL "MPI_LIBRARY-NOTFOUND") + message ( STATUS "MPI executable is ${MPIEXEC}" ) +else( DEFINED ENV{MPI_HOME} OR MPI_HOME ) + set(SOLVERLAB_WITH_MPI OFF) +endif( DEFINED ENV{MPI_HOME} OR MPI_HOME ) + +# Definition of MPI4PY_ROOT_DIR +if( ${SOLVERLAB_WITH_PYTHON} AND ${SOLVERLAB_WITH_MPI} AND NOT ${MPI4PY_ROOT_DIR}) + message(STATUS "Defining MPI4PY directory" ) + if( DEFINED ENV{MPI4PY_ROOT_DIR}) + set(MPI4PY_ROOT_DIR $ENV{MPI4PY_ROOT_DIR}) + else( DEFINED ENV{MPI4PY_ROOT_DIR}) + set(MPI4PY_ROOT_DIR ${PETSC_DIR}/${PETSC_ARCH}/lib/mpi4py) + endif( DEFINED ENV{MPI4PY_ROOT_DIR}) +endif(${SOLVERLAB_WITH_PYTHON} AND ${SOLVERLAB_WITH_MPI} AND NOT ${MPI4PY_ROOT_DIR}) + +if( MPI4PY_ROOT_DIR) + message(STATUS "MPI4PY directory is ${MPI4PY_ROOT_DIR}" ) + SET(CMAKE_SWIG_FLAGS ${CMAKE_SWIG_FLAGS} -DMPI4PY_ROOT_DIR=${MPI4PY_ROOT_DIR}) +endif( MPI4PY_ROOT_DIR) + +############################ +# Definition of HDF5_ROOT # +############################ +if ( DEFINED ENV{HDF5_ROOT_DIR} OR DEFINED HDF5_ROOT_DIR ) + if ( DEFINED ENV{HDF5_ROOT_DIR} ) + set(HDF5_ROOT $ENV{HDF5_ROOT_DIR}) + else ( DEFINED ENV{HDF5_ROOT_DIR} ) + set(HDF5_ROOT ${HDF5_ROOT_DIR}) + endif( DEFINED ENV{HDF5_ROOT_DIR} ) +endif( DEFINED ENV{HDF5_ROOT_DIR} OR DEFINED HDF5_ROOT_DIR ) ###################################################### # Detection or compilation of PETSc+SLEPc+HDF5 # @@ -57,6 +117,9 @@ include(ExternalProject)#For PETSc, MED and MEDCoupling petsc_get_version () message ( STATUS "PETSc found. Version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}" ) + message ( STATUS "PETSc compiler is ${PETSC_COMPILER}" ) + message ( STATUS "PETSc executable is ${PETSC_MPIEXEC}") + set(PETSC_INSTALL ${PETSC_DIR}) #Define and search slepc variables @@ -86,8 +149,13 @@ include(ExternalProject)#For PETSc, MED and MEDCoupling set(HDF5_ROOT ${PETSC_DIR}/${PETSC_ARCH})# define hint for hdf5/med installation in petsc external packages endif( DEFINED ENV{HDF5_ROOT} ) endif( NOT HDF5_ROOT ) - set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib) - set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include) + + find_package(HDF5 COMPONENTS CXX HL) + if ( NOT HDF5_FOUND) + set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib) + set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include) + endif( NOT HDF5_FOUND) + else ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR ) message ( STATUS "PETSC_DIR not set, searching PETSc and SLEPc in the system" ) @@ -98,7 +166,32 @@ include(ExternalProject)#For PETSc, MED and MEDCoupling set(PETSC_INCLUDES /usr/include/petsc /usr/include/petsc/petsc/mpiuni) set(PETSC_LIBRARIES /usr/lib64/libpetsc.so) - set(PETSC_VERSION "3.8") #3.8 for fedora 26 , 3.9 for fedora 29 , 3.10 for fedora 30, , 3.12 for fedora 32 + file(STRINGS /usr/include/petsc/petscversion.h petscversion_file) + FOREACH(line ${petscversion_file}) + string(FIND "${line}" "#define PETSC_VERSION_MAJOR " pos) + IF(NOT ${pos} EQUAL -1) + string(LENGTH ${line} line_length_major)#length of the line + MATH(EXPR petsc_version_major "${line_length_major}-1")#line ends with "x", that counts for 1 character + string(SUBSTRING ${line} ${petsc_version_major} 1 PETSC_VERSION_MAJOR) + break() + ENDIF(NOT ${pos} EQUAL -1) + ENDFOREACH(line ${petscversion_file}) + FOREACH(line ${petscversion_file}) + string(FIND "${line}" "#define PETSC_VERSION_MINOR " pos) + IF(NOT ${pos} EQUAL -1) + string(LENGTH ${line} line_length_minor)#length of the line + if(${line_length_minor} EQUAL ${line_length_major}) + MATH(EXPR petsc_version_minor "${line_length_minor}-1")#line ends with "y", that counts for 1 character + string(SUBSTRING ${line} ${petsc_version_minor} 1 PETSC_VERSION_MINOR) + break() + else(${line_length_minor} EQUAL ${line_length_major}) + MATH(EXPR petsc_version_minor "${line_length_minor}-2")#line ends with "yy", that counts for two characters + string(SUBSTRING ${line} ${petsc_version_minor} 2 PETSC_VERSION_MINOR) + endif(${line_length_minor} EQUAL ${line_length_major}) + ENDIF(NOT ${pos} EQUAL -1) + ENDFOREACH(line ${petscversion_file}) + set(PETSC_VERSION ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}) #3.8 for fedora 26 , 3.9 for fedora 29 , 3.10 for fedora 30 , 3.12 for fedora 32 , 3.14 for fedora 34 , 3.15 for fedora 35 + message(STATUS "PETSc detected, version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}" ) set(CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, petsc-devel (>= 3.4)") # This is not fully working yet. set(PETSC_INSTALL ${PETSC_DIR}) @@ -110,6 +203,32 @@ include(ExternalProject)#For PETSc, MED and MEDCoupling set(SLEPC_DIR /usr/) set(SLEPC_INCLUDES ${SLEPC_DIR}/include) set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so) + file(STRINGS /usr/include/slepc/slepcversion.h slepcversion_file) + FOREACH(line ${slepcversion_file}) + string(FIND "${line}" "#define SLEPC_VERSION_MAJOR " pos) + IF(NOT ${pos} EQUAL -1) + string(LENGTH ${line} line_length_major)#length of the line + MATH(EXPR slepc_version_major "${line_length_major}-1")#line ends with "x", that counts for 1 character + string(SUBSTRING ${line} ${slepc_version_major} 1 SLEPC_VERSION_MAJOR) + break() + ENDIF(NOT ${pos} EQUAL -1) + ENDFOREACH(line ${slepcversion_file}) + FOREACH(line ${slepcversion_file}) + string(FIND "${line}" "#define SLEPC_VERSION_MINOR " pos) + IF(NOT ${pos} EQUAL -1) + string(LENGTH ${line} line_length_minor)#length of the line + if(${line_length_minor} EQUAL ${line_length_major}) + MATH(EXPR slepc_version_minor "${line_length_minor}-1")#line ends with "y", that counts for 1 character + string(SUBSTRING ${line} ${slepc_version_minor} 1 SLEPC_VERSION_MINOR) + break() + else(${line_length_minor} EQUAL ${line_length_major}) + MATH(EXPR slepc_version_minor "${line_length_minor}-2")#line ends with "yy", that counts for two characters + string(SUBSTRING ${line} ${slepc_version_minor} 2 SLEPC_VERSION_MINOR) + endif(${line_length_minor} EQUAL ${line_length_major}) + ENDIF(NOT ${pos} EQUAL -1) + ENDFOREACH(line ${slepcversion_file}) + set(SLEPC_VERSION ${SLEPC_VERSION_MAJOR}.${SLEPC_VERSION_MINOR}) #3.8 for fedora 26 , 3.9 for fedora 29 , 3.10 for fedora 30 , 3.12 for fedora 32 , 3.14 for fedora 34 , 3.15 for fedora 35 + message(STATUS "SLEPc detected, version is ${SLEPC_VERSION_MAJOR}.${SLEPC_VERSION_MINOR}" ) set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, slepc-devel (>= 3.4)") # This is not fully working yet. else ( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" ) message( FATAL_ERROR "SLEPc not found in the system" ) @@ -153,7 +272,7 @@ include(ExternalProject)#For PETSc, MED and MEDCoupling message (STATUS "SLEPC will be downloaded and compiled from ${DOWNLOAD_SLEPC}" ) message (STATUS "HDF5 will be downloaded and compiled from ${DOWNLOAD_HDF5}" ) - #extract tarball name + #extract petsc tarball name string(LENGTH "${DOWNLOAD_PETSC}" tarball_url_length)#length of the tarball string(FIND "${DOWNLOAD_PETSC}" "/" start_tarball_name REVERSE )# last occurence of "/" MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/" @@ -162,13 +281,13 @@ include(ExternalProject)#For PETSc, MED and MEDCoupling set(PETSC_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${PETSC_TARBALL_NAME}) # Location of the final install set(PETSC_ARCH arch-linux-c-opt) - set(PETSC_INSTALL ${CMAKE_INSTALL_PREFIX}/share/petsc)#folder to copy petsc libraries and include files + set(PETSC_INSTALL ${CMAKE_INSTALL_PREFIX}/lib/petsc)#folder to copy petsc libraries and include files ExternalProject_Add (PETSc URL ${DOWNLOAD_PETSC} SOURCE_DIR ${PETSC_DIR} BUILD_IN_SOURCE TRUE - CONFIGURE_COMMAND /configure --prefix=${PETSC_INSTALL} --with-debugging=0 --with-mpi=0 --download-f2cblaslapack=${DOWNLOAD_F2CBLASLAPACK} --with-fc=0 --download-slepc=${DOWNLOAD_SLEPC} --download-hdf5=${DOWNLOAD_HDF5} + CONFIGURE_COMMAND /configure --prefix=${PETSC_INSTALL} --with-debugging=0 --download-f2cblaslapack=${DOWNLOAD_F2CBLASLAPACK} --with-mpi=0 --with-fc=0 --download-slepc=${DOWNLOAD_SLEPC} --download-hdf5=${DOWNLOAD_HDF5} --with-petsc4py=yes --download-slepc-configure-arguments="--with-slepc4py=yes" # --download-openmpi=${DOWNLOAD_OPENMPI} --download-hypre=${DOWNLOAD_HYPRE} --download-mpi4py=${DOWNLOAD_MPI4PY} BUILD_COMMAND make all TEST_COMMAND make check INSTALL_COMMAND make install @@ -193,10 +312,24 @@ include(ExternalProject)#For PETSc, MED and MEDCoupling set(PETSC_INCLUDES ${PETSC_DIR}/${PETSC_ARCH}/include ${PETSC_DIR}/include) set(PETSC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/lib/libpetsc.so) + #extract slepc tarball name + string(LENGTH "${DOWNLOAD_SLEPC}" tarball_url_length)#length of the tarball + string(FIND "${DOWNLOAD_SLEPC}" "/" start_tarball_name REVERSE )# last occurence of "/" + MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/" + MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters + string(SUBSTRING ${DOWNLOAD_SLEPC} ${start_tarball_name} ${tarball_name_length} SLEPC_TARBALL_NAME) + + #extract slepc version + string(LENGTH "${SLEPC_TARBALL_NAME}" tarball_name_length)#length of the tarball + string(FIND "${SLEPC_TARBALL_NAME}" "-" start_version_name REVERSE )# last occurence of "-" + MATH(EXPR start_version_name "${start_version_name}+1")#start after the occurence of "/" + string(SUBSTRING ${SLEPC_TARBALL_NAME} ${start_version_name} ${tarball_name_length} SLEPC_VERSION) + message( STATUS "SLEPc version ${SLEPC_VERSION} will be installed" ) + #define slepc variables set(SLEPC_DIR ${PETSC_INSTALL}) - set(SLEPC_INCLUDES ${SLEPC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/installed-arch-linux2-c-opt/include) - set(SLEPC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/installed-arch-linux2-c-opt/lib/libslepc.so) + set(SLEPC_INCLUDES ${SLEPC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/${SLEPC_TARBALL_NAME}/include ) + set(SLEPC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/${SLEPC_TARBALL_NAME}/installed-arch-linux2-c-opt/lib/libslepc.so) message( STATUS "SLEPc includes ${SLEPC_INCLUDES}") #define hdf5 variables @@ -210,6 +343,13 @@ include(ExternalProject)#For PETSc, MED and MEDCoupling set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib) set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include) + #define MPI variables + #set(SOLVERLAB_WITH_MPI ON) + #set(MPI_HOME ${PETSC_INSTALL} ) + #set(MPI_LIBRARY ${PETSC_INSTALL}/lib/libmpi.so) + #set(MPIEXEC ${PETSC_INSTALL}/bin/mpiexec) + #set(MPI4PY_ROOT_DIR ${PETSC_INSTALL}/lib/mpi4py ) + endif ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" ) endif ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR ) @@ -240,7 +380,7 @@ else( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR}) message(STATUS "MED will be downloaded and installed from ${DOWNLOAD_MED}") set(MACHINE PCLINUX) set(MEDFILE_DEFINITIONS "-D${MACHINE} -DMEDFILE_INSTALL_DOC=OFF")#Comment ne pas compiler la doc ? - set(MEDFILE_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/med) # Location of the final install + set(MEDFILE_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/lib/med) # Location of the final install #extraction of the tarball archive name string(LENGTH "${DOWNLOAD_MED}" tarball_url_length)#length of the name of the tarball @@ -253,7 +393,7 @@ else( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR}) URL ${DOWNLOAD_MED} #location of med tarball SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MED_TARBALL_NAME} BUILD_IN_SOURCE TRUE - CONFIGURE_COMMAND /configure --prefix=${MEDFILE_ROOT_DIR} --with-hdf5=${HDF5_ROOT} --with-hdf5-include=${HDF5_ROOT}/include --with-hdf5-lib=${HDF5_LIBRARY_DIR} --with-hdf5-bin=${HDF5_ROOT}/bin --with-swig=yes + CONFIGURE_COMMAND /configure --prefix=${MEDFILE_ROOT_DIR} --with-hdf5=${HDF5_ROOT} --with-hdf5-include=${HDF5_ROOT}/include --with-hdf5-lib=${HDF5_LIBRARY_DIR} --with-hdf5-bin=${HDF5_ROOT}/bin --with-swig=yes --disable-fortran #CC=${PETSC_INSTALL}/bin/mpicc BUILD_COMMAND make INSTALL_COMMAND make install INSTALL_DIR ${MEDFILE_ROOT_DIR} @@ -284,34 +424,19 @@ string(REPLACE ";" ":" MEDFILE_LIBRARIES_INSTALL "${MEDFILE_LIBRARIES}")# use c ###################################################### if( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR}) - if( NOT MEDCOUPLING_ROOT_DIR ) + if ( NOT MEDCOUPLING_ROOT_DIR ) set(MEDCOUPLING_ROOT_DIR $ENV{MEDCOUPLING_ROOT_DIR} ) endif( NOT MEDCOUPLING_ROOT_DIR ) message (STATUS "Seeking MEDCoupling library in ${MEDCOUPLING_ROOT_DIR}") - if( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx) - message (FATAL_ERROR "MEDCoupling library not found in ${MEDCOUPLING_ROOT_DIR}") - else( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx) - message (STATUS "MEDCoupling library found in ${MEDCOUPLING_ROOT_DIR}") - endif( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx) - - add_library(medloader SHARED IMPORTED ) - set_property(TARGET medloader PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so) - add_library(interpkernel SHARED IMPORTED ) - set_property(TARGET interpkernel PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libinterpkernel.so) - add_library(medcouplingremapper SHARED IMPORTED ) - set_property(TARGET medcouplingremapper PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedcouplingremapper.so) - add_library(medcouplingcpp SHARED IMPORTED ) - set_property(TARGET medcouplingcpp PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedcouplingcpp.so) - set(MEDCoupling_DIR ${MEDCOUPLING_ROOT_DIR}/cmake_files) find_package(MEDCoupling CONFIG REQUIRED) # CONFIG is important ! message( STATUS "MEDCoupling found. Version is ${MEDCoupling_VERSION}") else( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR}) message(STATUS "MEDCoupling will be downloaded and installed from ${DOWNLOAD_MEDCOUPLING}") - set(MEDCOUPLING_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/medcoupling) # Location of the final install + set(MEDCOUPLING_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/lib/medcoupling) # Location of the final install SET(ENV{HDF5_ROOT} ${HDF5_ROOT})#MEDCoupling install process seems to require an environment variable #extraction of the tarball archive name @@ -322,13 +447,13 @@ else( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR}) string(SUBSTRING ${DOWNLOAD_MEDCOUPLING} ${start_tarball_name} ${tarball_name_length} MEDCOUPLING_TARBALL_NAME) string(SUBSTRING ${MEDCOUPLING_TARBALL_NAME} 12 ${tarball_name_length} MEDCoupling_VERSION) - message(STATUS "MEDCoupling version will be ${MEDCoupling_VERSION}") + message(STATUS "MEDCoupling will be installed at ${MEDCOUPLING_ROOT_DIR}") ExternalProject_Add (MEDCoupling URL ${DOWNLOAD_MEDCOUPLING} #location of medcoupling tarball SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MEDCOUPLING_TARBALL_NAME} -# BUILD_IN_SOURCE FALSE - CONFIGURE_COMMAND cmake /${MEDCOUPLING_TARBALL_NAME} -DCMAKE_INSTALL_PREFIX=${MEDCOUPLING_ROOT_DIR} -DCONFIGURATION_ROOT_DIR=/configuration-${MEDCoupling_VERSION} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ENABLE_PARTITIONER=OFF -DMEDCOUPLING_PARTITIONER_METIS=OFF -DMEDCOUPLING_PARTITIONER_SCOTCH=OFF -DMEDCOUPLING_ENABLE_RENUMBER=OFF -DMEDCOUPLING_BUILD_DOC=OFF -DHDF5_ROOT_DIR=${HDF5_ROOT} + BUILD_IN_SOURCE TRUE + CONFIGURE_COMMAND cmake /${MEDCOUPLING_TARBALL_NAME} -DCMAKE_INSTALL_PREFIX=${MEDCOUPLING_ROOT_DIR} -DCONFIGURATION_ROOT_DIR=/configuration-${MEDCoupling_VERSION} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ENABLE_PARTITIONER=OFF -DMEDCOUPLING_PARTITIONER_METIS=OFF -DMEDCOUPLING_PARTITIONER_SCOTCH=OFF -DMEDCOUPLING_ENABLE_RENUMBER=OFF -DMEDCOUPLING_BUILD_DOC=OFF -DHDF5_ROOT_DIR=${HDF5_ROOT} -DMEDCOUPLING_USE_64BIT_IDS=ON #-DSALOME_USE_MPI=ON BUILD_COMMAND make INSTALL_COMMAND make install INSTALL_DIR ${MEDCOUPLING_ROOT_DIR} @@ -344,6 +469,8 @@ else( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR}) add_library(medloader SHARED IMPORTED ) set_property(TARGET medloader PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so) + SET(MEDCOUPLING_USE_64BIT_IDS ON) + endif( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR} ) set(MEDCOUPLING_INCLUDE_DIR ${MEDCOUPLING_ROOT_DIR}/include) @@ -377,20 +504,20 @@ ENDIF(MEDCOUPLING_USE_64BIT_IDS) #################### # Paraview variables to choose python version and for env_SOLVERLAB.sh -if ( DEFINED PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR}) - if ( DEFINED PARAVIEW_ROOT_DIR ) +if ( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR}) + if ( PARAVIEW_ROOT_DIR ) set( PARAVIEW_INCLUDE_DIR ${PARAVIEW_ROOT_DIR}/include) set( PARAVIEW_LIBRARIES_DIR ${PARAVIEW_ROOT_DIR}/lib) - else( DEFINED PARAVIEW_ROOT_DIR ) + else( PARAVIEW_ROOT_DIR ) set( PARAVIEW_ROOT_DIR $ENV{PARAVIEW_ROOT_DIR} ) set( PARAVIEW_INCLUDE_DIR $ENV{PARAVIEW_ROOT_DIR}/include) set( PARAVIEW_LIBRARIES_DIR $ENV{PARAVIEW_ROOT_DIR}/lib) - endif( DEFINED PARAVIEW_ROOT_DIR ) -else( DEFINED PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR}) - message(STATUS "PARAVIEW_ROOT_DIR not set. Trying to detect paraview.") + endif( PARAVIEW_ROOT_DIR ) +else( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR}) + message(STATUS "PARAVIEW_ROOT_DIR not set. Trying to detect paraview in the system.") set( PARAVIEW_INCLUDE_DIR /usr/include/paraview/) - set( PARAVIEW_LIBRARIES_DIR /usr/lib/paraview/:/usr/lib64/paraview/:/usr/lib64/vtk/:/usr/lib/vtk/) -endif( DEFINED PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR}) + set( PARAVIEW_LIBRARIES_DIR /usr/lib/paraview/:/usr/lib64/paraview/:/usr/lib64/vtk/:/usr/lib/vtk/:/usr/lib/x86_64-linux-gnu) +endif( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR}) if ( DEFINED PARAVIEW_VERSION OR DEFINED ENV{PARAVIEW_VERSION} ) if ( NOT DEFINED PARAVIEW_VERSION ) @@ -404,7 +531,7 @@ else( DEFINED PARAVIEW_VERSION OR DEFINED ENV{PARAVIEW_VERSION} ) #extraction of the paraview version" IF ( ${vtkConfig_file} STREQUAL "vtkConfig_file-NOTFOUND" ) message(WARNING "Could not find ParaView configuration file vtkPVConfig.h in folder ${PARAVIEW_INCLUDE_DIR} and subdirectories ${PARAVIEW_SUFFIXES}. Postprocessing may not work") - set( PARAVIEW_VERSION "5.0") + set( PARAVIEW_VERSION "5.8") ELSE ( ${vtkConfig_file} STREQUAL "vtkConfig_file-NOTFOUND" ) message( STATUS "Found vtkPVConfig.h in ${vtkConfig_file}") file(STRINGS ${vtkConfig_file} vtkConfig) @@ -431,13 +558,13 @@ ELSE ( ${PARAVIEW_VERSION} STRGREATER "5.6" OR ${PARAVIEW_VERSION} STREQUAL "5.6 ENDIF( ${PARAVIEW_VERSION} STRGREATER "5.6" OR ${PARAVIEW_VERSION} STREQUAL "5.6" ) # Find python -IF ( PYTHON_ROOT_DIR OR ENV{PYTHON_ROOT_DIR}) +IF ( PYTHON_ROOT_DIR OR DEFINED ENV{PYTHON_ROOT_DIR}) IF ( PYTHON_ROOT_DIR ) set(Python_ROOT_DIR ${PYTHON_ROOT_DIR} ) ELSE( PYTHON_ROOT_DIR ) set(Python_ROOT_DIR $ENV{PYTHON_ROOT_DIR} ) ENDIF( PYTHON_ROOT_DIR) -ENDIF(PYTHON_ROOT_DIR OR ENV{PYTHON_ROOT_DIR}) +ENDIF( PYTHON_ROOT_DIR OR DEFINED ENV{PYTHON_ROOT_DIR}) IF (${CMAKE_VERSION} VERSION_GREATER "3.12.0") find_package(Python ${PYTHON2OR3} REQUIRED COMPONENTS Interpreter Development ) @@ -452,50 +579,97 @@ ELSE (${CMAKE_VERSION} VERSION_GREATER "3.12.0") set(Python_VERSION_MINOR ${PYTHON_VERSION_MINOR}) ENDIF(${CMAKE_VERSION} VERSION_GREATER "3.12.0") -#PyQt5 -IF ( NOT PYQT5_ROOT_DIR ) - set(PYQT5_ROOT_DIR $ENV{PYQT5_ROOT_DIR} ) -ENDIF( NOT PYQT5_ROOT_DIR ) +message(STATUS "Python version found is ${Python_VERSION}") -#Matplotlib -IF ( NOT MATPLOTLIB_ROOT_DIR ) +#Matplotlib root dir +IF ( NOT DEFINED MATPLOTLIB_ROOT_DIR ) set(MATPLOTLIB_ROOT_DIR $ENV{MATPLOTLIB_ROOT_DIR} ) -ENDIF( NOT MATPLOTLIB_ROOT_DIR ) - -#HDF5_ROOT_DIR -IF ( NOT HDF5_ROOT_DIR ) - IF ( ENV{HDF5_ROOT_DIR} ) - set(HDF5_ROOT_DIR $ENV{HDF5_ROOT_DIR} ) - ELSE( ENV{HDF5_ROOT_DIR} ) - set(HDF5_ROOT_DIR ${HDF5_ROOT} ) - ENDIF( ENV{HDF5_ROOT_DIR} ) -ENDIF( NOT HDF5_ROOT_DIR ) +ENDIF( NOT DEFINED MATPLOTLIB_ROOT_DIR ) +#PyQt5 root dir +IF ( NOT DEFINED PYQT5_ROOT_DIR ) + set(PYQT5_ROOT_DIR $ENV{PYQT5_ROOT_DIR} ) +ENDIF( NOT DEFINED PYQT5_ROOT_DIR ) #Paraview library paths set (PV_LIB_DIR /usr/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/dist-packages/paraview/:/usr/lib64/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtk/:${MATPLOTLIB_ROOT_DIR}/lib/:${PARAVIEW_LIBRARIES_DIR}) -set (PV_PYTHON_DIR /usr/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/dist-packages/paraview/:/usr/lib64/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtk/:/usr/lib64/paraview/site-packages/:/usr/lib64/paraview/site-packages/paraview/:/usr/lib64/paraview/site-packages/vtk/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/paraview/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtkmodules:/usr/lib/paraview/site-packages/paraview:/usr/lib/paraview/site-packages/paraview/vtk:${PARAVIEW_ROOT_DIR}/lib/:${PARAVIEW_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/:${PARAVIEW_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtkmodules/:${MATPLOTLIB_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages:${PYQT5_ROOT_DIR}:${PYQT5_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages) - -message(STATUS "Python version found is ${Python_VERSION}") +set (PV_PYTHON_DIR /usr/lib/python${Python_VERSION_MAJOR}/dist-packages/:/usr/lib/python${Python_VERSION_MAJOR}/dist-packages/paraview/:/usr/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/dist-packages/paraview/:/usr/lib64/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtk/:/usr/lib64/paraview/site-packages/:/usr/lib64/paraview/site-packages/paraview/:/usr/lib64/paraview/site-packages/vtk/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/paraview/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtkmodules:/usr/lib/paraview/site-packages/paraview:/usr/lib/paraview/site-packages/paraview/vtk:${PARAVIEW_ROOT_DIR}/lib/:${PARAVIEW_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/:${PARAVIEW_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtkmodules/:${MATPLOTLIB_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages:${PYQT5_ROOT_DIR}:${PYQT5_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages) + +# Detection of python-paraview +string(REPLACE ":" ";" PV_PYTHON_DIR_PATHS "${PV_PYTHON_DIR}")# use semicolon instead of colon in PATH search +find_file(python-paraview simple.py PATHS ${PV_PYTHON_DIR_PATHS}) +if( ${python-paraview} STREQUAL "python-paraview-NOTFOUND" ) + message(WARNING "Python Paraview library not found. Post processing will fail in SOLVERLAB scripts.") + set(PRELOAD_NETCDF_ON_UBUNTU20 OFF) +else( ${python-paraview} STREQUAL "python-paraview-NOTFOUND" ) + if( ${python-paraview} STREQUAL "/usr/lib/python3/dist-packages/paraview/simple.py" ) + message ( STATUS "Using system Paraview python libraries on Ubuntu 20.04 requires the presence and preload of library netcdf (bug in linkage)." ) + if( EXISTS "/usr/lib/x86_64-linux-gnu/libnetcdf.so" ) + message ( STATUS "Library netcdf found in the system. Paraview python libraries should be functional." ) + set(PRELOAD_NETCDF_ON_UBUNTU20 ON) + else( EXISTS "/usr/lib/x86_64-linux-gnu/libnetcdf.so" ) + message ( WARNING "Library netcdf not found in system. Paraview python libraries may not be functional (bug in linkage)." ) + set(PRELOAD_NETCDF_ON_UBUNTU20 OFF) + endif( EXISTS "/usr/lib/x86_64-linux-gnu/libnetcdf.so" ) + else( ${python-paraview} STREQUAL "/usr/lib/python3/dist-packages/paraview/simple.py" ) + message(STATUS "Python Paraview library found. Post processing will work in SOLVERLAB scripts.") + set(PRELOAD_NETCDF_ON_UBUNTU20 OFF) + endif( ${python-paraview} STREQUAL "/usr/lib/python3/dist-packages/paraview/simple.py" ) +endif( ${python-paraview} STREQUAL "python-paraview-NOTFOUND" ) + +# Find SWIG +IF ( DEFINED SWIG_ROOT_DIR OR DEFINED ENV{SWIG_ROOT_DIR}) + IF ( DEFINED SWIG_ROOT_DIR ) + set(SWIG_EXECUTABLE ${SWIG_ROOT_DIR}/bin/swig ) + ELSE ( DEFINED SWIG_ROOT_DIR ) + set(SWIG_EXECUTABLE $ENV{SWIG_ROOT_DIR}/bin/swig ) + ENDIF( DEFINED SWIG_ROOT_DIR) +ENDIF( DEFINED SWIG_ROOT_DIR OR DEFINED ENV{SWIG_ROOT_DIR}) find_package (SWIG 3.0 REQUIRED) +# Find Doxygen if (SOLVERLAB_WITH_DOCUMENTATION) # + IF ( DEFINED DOXYGEN_ROOT_DIR OR DEFINED ENV{DOXYGEN_ROOT_DIR}) + IF ( DEFINED DOXYGEN_ROOT_DIR ) + set(DOXYGEN_EXECUTABLE ${DOXYGEN_ROOT_DIR}/bin/doxygen ) + ELSE ( DEFINED DOXYGEN_ROOT_DIR ) + set(DOXYGEN_EXECUTABLE $ENV{DOXYGEN_ROOT_DIR}/bin/doxygen ) + ENDIF( DEFINED DOXYGEN_ROOT_DIR) + ENDIF( DEFINED DOXYGEN_ROOT_DIR OR DEFINED ENV{DOXYGEN_ROOT_DIR}) find_package (Doxygen) # set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, doxygen, graphviz, mscgen") set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, doxygen, graphviz, mscgen") if (NOT DOXYGEN_FOUND) message (FATAL_ERROR "Doxygen is needed to build the documentation. Please install it correctly.") endif(NOT DOXYGEN_FOUND) -endif() +endif(SOLVERLAB_WITH_DOCUMENTATION) + if (SOLVERLAB_WITH_TESTS) # enable_testing () + IF ( DEFINED CPPUNIT_ROOT_DIR OR DEFINED ENV{CPPUNIT_ROOT_DIR}) + IF ( DEFINED CPPUNIT_ROOT_DIR ) + set(CPPUNIT_ROOT_USER ${CPPUNIT_ROOT_DIR} ) + ELSE ( DEFINED CPPUNIT_ROOT_DIR ) + set(CPPUNIT_ROOT_USER $ENV{CPPUNIT_ROOT_DIR} ) + ENDIF( DEFINED CPPUNIT_ROOT_DIR) + ENDIF( DEFINED CPPUNIT_ROOT_DIR OR DEFINED ENV{CPPUNIT_ROOT_DIR}) find_package (CPPUNIT REQUIRED) -endif() -find_package (XDR REQUIRED) +endif(SOLVERLAB_WITH_TESTS) # Enter subdirectories +set(CDMATH_WITH_POSTPRO ${SOLVERLAB_WITH_POSTPRO} ) +set(CDMATH_WITH_PETSC ${SOLVERLAB_WITH_PETSC} ) +set(CDMATH_WITH_DOCUMENTATION ${SOLVERLAB_WITH_DOCUMENTATION} ) +set(CDMATH_WITH_PYTHON ${SOLVERLAB_WITH_PYTHON} ) +set(CDMATH_WITH_PACKAGE ${SOLVERLAB_WITH_PACKAGE} ) +set(CDMATH_WITH_TESTS ${SOLVERLAB_WITH_TESTS} ) add_subdirectory (CDMATH) if(SOLVERLAB_WITH_COREFLOWS) + set(COREFLOWS_WITH_DOCUMENTATION ${SOLVERLAB_WITH_DOCUMENTATION} ) + set(COREFLOWS_WITH_PYTHON ${SOLVERLAB_WITH_PYTHON} ) + set(COREFLOWS_WITH_GUI ${SOLVERLAB_WITH_GUI} ) + set(COREFLOWS_WITH_PACKAGE ${SOLVERLAB_WITH_PACKAGE} ) + set(COREFLOWS_WITH_TESTS ${SOLVERLAB_WITH_TESTS} ) add_subdirectory (CoreFlows) endif(SOLVERLAB_WITH_COREFLOWS) @@ -506,4 +680,3 @@ configure_file( @ONLY ) -