# -*- coding: utf-8 -*-
#
-# Copyright (C) 2008-2019 EDF R&D
+# Copyright (C) 2008-2021 EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
import sys
import logging
import copy
+import time
import numpy
from functools import partial
-from daCore import Persistence
-from daCore import PlatformInfo
-from daCore import Interfaces
+from daCore import Persistence, PlatformInfo, Interfaces
from daCore import Templates
-from daCore.Interfaces import ImportFromScript, ImportFromFile
# ==============================================================================
class CacheManager(object):
lenghtOfRedundancy = -1,
):
"""
- Les caractéristiques de tolérance peuvent être modifées à la création.
+ Les caractéristiques de tolérance peuvent être modifiées à la création.
"""
- self.__tolerBP = float(toleranceInRedundancy)
- self.__lenghtOR = int(lenghtOfRedundancy)
- self.__initlnOR = self.__lenghtOR
+ self.__tolerBP = float(toleranceInRedundancy)
+ self.__lenghtOR = int(lenghtOfRedundancy)
+ self.__initlnOR = self.__lenghtOR
+ self.__seenNames = []
+ self.__enabled = True
self.clearCache()
def clearCache(self):
"Vide le cache"
- self.__listOPCV = [] # Operator Previous Calculated Points, Results, Point Norms
+ self.__listOPCV = [] # Previous Calculated Points, Results, Point Norms, Operator
+ self.__seenNames = []
# logging.debug("CM Tolerance de determination des doublons : %.2e", self.__tolerBP)
- def wasCalculatedIn(self, xValue ): #, info="" ):
+ def wasCalculatedIn(self, xValue, oName="" ): #, info="" ):
"Vérifie l'existence d'un calcul correspondant à la valeur"
__alc = False
__HxV = None
- for i in range(min(len(self.__listOPCV),self.__lenghtOR)-1,-1,-1):
- if not hasattr(xValue, 'size') or (xValue.size != self.__listOPCV[i][0].size):
- # logging.debug("CM Différence de la taille %s de X et de celle %s du point %i déjà calculé", xValue.shape,i,self.__listOPCP[i].shape)
- continue
- if numpy.linalg.norm(numpy.ravel(xValue) - self.__listOPCV[i][0]) < self.__tolerBP * self.__listOPCV[i][2]:
- __alc = True
- __HxV = self.__listOPCV[i][1]
- # logging.debug("CM Cas%s déja calculé, portant le numéro %i", info, i)
- break
+ if self.__enabled:
+ for i in range(min(len(self.__listOPCV),self.__lenghtOR)-1,-1,-1):
+ if not hasattr(xValue, 'size') or (str(oName) != self.__listOPCV[i][3]) or (xValue.size != self.__listOPCV[i][0].size):
+ # logging.debug("CM Différence de la taille %s de X et de celle %s du point %i déjà calculé", xValue.shape,i,self.__listOPCP[i].shape)
+ pass
+ elif numpy.linalg.norm(numpy.ravel(xValue) - self.__listOPCV[i][0]) < self.__tolerBP * self.__listOPCV[i][2]:
+ __alc = True
+ __HxV = self.__listOPCV[i][1]
+ # logging.debug("CM Cas%s déja calculé, portant le numéro %i", info, i)
+ break
return __alc, __HxV
- def storeValueInX(self, xValue, HxValue ):
- "Stocke un calcul correspondant à la valeur"
+ def storeValueInX(self, xValue, HxValue, oName="" ):
+ "Stocke pour un opérateur o un calcul Hx correspondant à la valeur x"
if self.__lenghtOR < 0:
self.__lenghtOR = 2 * xValue.size + 2
self.__initlnOR = self.__lenghtOR
+ self.__seenNames.append(str(oName))
+ if str(oName) not in self.__seenNames: # Etend la liste si nouveau
+ self.__lenghtOR += 2 * xValue.size + 2
+ self.__initlnOR += self.__lenghtOR
+ self.__seenNames.append(str(oName))
while len(self.__listOPCV) > self.__lenghtOR:
# logging.debug("CM Réduction de la liste des cas à %i éléments par suppression du premier", self.__lenghtOR)
self.__listOPCV.pop(0)
copy.copy(numpy.ravel(xValue)),
copy.copy(HxValue),
numpy.linalg.norm(xValue),
+ str(oName),
) )
def disable(self):
"Inactive le cache"
self.__initlnOR = self.__lenghtOR
self.__lenghtOR = 0
+ self.__enabled = False
def enable(self):
"Active le cache"
self.__lenghtOR = self.__initlnOR
+ self.__enabled = True
# ==============================================================================
class Operator(object):
CM = CacheManager()
#
def __init__(self,
+ name = "GenericOperator",
fromMethod = None,
fromMatrix = None,
avoidingRedundancy = True,
inputAsMultiFunction = False,
+ enableMultiProcess = False,
extraArguments = None,
):
"""
deux mots-clé, soit une fonction ou un multi-fonction python, soit une
matrice.
Arguments :
+ - name : nom d'opérateur
- fromMethod : argument de type fonction Python
- fromMatrix : argument adapté au constructeur numpy.matrix
- avoidingRedundancy : booléen évitant (ou pas) les calculs redondants
- extraArguments : arguments supplémentaires passés à la fonction de
base et ses dérivées (tuple ou dictionnaire)
"""
+ self.__name = str(name)
self.__NbCallsAsMatrix, self.__NbCallsAsMethod, self.__NbCallsOfCached = 0, 0, 0
self.__AvoidRC = bool( avoidingRedundancy )
self.__inputAsMF = bool( inputAsMultiFunction )
+ self.__mpEnabled = bool( enableMultiProcess )
self.__extraArgs = extraArguments
if fromMethod is not None and self.__inputAsMF:
self.__Method = fromMethod # logtimer(fromMethod)
self.__Matrix = None
self.__Type = "Method"
elif fromMethod is not None and not self.__inputAsMF:
- self.__Method = partial( MultiFonction, _sFunction=fromMethod)
+ self.__Method = partial( MultiFonction, _sFunction=fromMethod, _mpEnabled=self.__mpEnabled)
self.__Matrix = None
self.__Type = "Method"
elif fromMatrix is not None:
"Renvoie le type"
return self.__Type
- def appliedTo(self, xValue, HValue = None, argsAsSerie = False):
+ def appliedTo(self, xValue, HValue = None, argsAsSerie = False, returnSerieAsArrayMatrix = False):
"""
Permet de restituer le résultat de l'application de l'opérateur à une
série d'arguments xValue. Cette méthode se contente d'appliquer, chaque
#
if _HValue is not None:
assert len(_xValue) == len(_HValue), "Incompatible number of elements in xValue and HValue"
- HxValue = []
+ _HxValue = []
for i in range(len(_HValue)):
- HxValue.append( numpy.asmatrix( numpy.ravel( _HValue[i] ) ).T )
+ _HxValue.append( numpy.asmatrix( numpy.ravel( _HValue[i] ) ).T )
if self.__AvoidRC:
- Operator.CM.storeValueInX(_xValue[i],HxValue[-1])
+ Operator.CM.storeValueInX(_xValue[i],_HxValue[-1],self.__name)
else:
- HxValue = []
+ _HxValue = []
_xserie = []
_hindex = []
for i, xv in enumerate(_xValue):
if self.__AvoidRC:
- __alreadyCalculated, __HxV = Operator.CM.wasCalculatedIn(xv)
+ __alreadyCalculated, __HxV = Operator.CM.wasCalculatedIn(xv,self.__name)
else:
__alreadyCalculated = False
#
_xserie.append( xv )
_hindex.append( i )
_hv = None
- HxValue.append( _hv )
+ _HxValue.append( _hv )
#
if len(_xserie)>0 and self.__Matrix is None:
if self.__extraArgs is None:
for i in _hindex:
_xv = _xserie.pop(0)
_hv = _hserie.pop(0)
- HxValue[i] = _hv
+ _HxValue[i] = _hv
if self.__AvoidRC:
- Operator.CM.storeValueInX(_xv,_hv)
+ Operator.CM.storeValueInX(_xv,_hv,self.__name)
#
- if argsAsSerie: return HxValue
- else: return HxValue[-1]
+ if returnSerieAsArrayMatrix:
+ _HxValue = numpy.stack([numpy.ravel(_hv) for _hv in _HxValue], axis=1)
+ #
+ if argsAsSerie: return _HxValue
+ else: return _HxValue[-1]
- def appliedControledFormTo(self, paires, argsAsSerie = False ):
+ def appliedControledFormTo(self, paires, argsAsSerie = False, returnSerieAsArrayMatrix = False):
"""
Permet de restituer le résultat de l'application de l'opérateur à des
paires (xValue, uValue). Cette méthode se contente d'appliquer, son
PlatformInfo.isIterable( _xuValue, True, " in Operator.appliedControledFormTo" )
#
if self.__Matrix is not None:
- HxValue = []
+ _HxValue = []
for paire in _xuValue:
_xValue, _uValue = paire
self.__addOneMatrixCall()
- HxValue.append( self.__Matrix * _xValue )
+ _HxValue.append( self.__Matrix * _xValue )
else:
- HxValue = []
+ _xuArgs = []
for paire in _xuValue:
- _xuValue = []
_xValue, _uValue = paire
if _uValue is not None:
- _xuValue.append( paire )
+ _xuArgs.append( paire )
else:
- _xuValue.append( _xValue )
- self.__addOneMethodCall( len(_xuValue) )
+ _xuArgs.append( _xValue )
+ self.__addOneMethodCall( len(_xuArgs) )
if self.__extraArgs is None:
- HxValue = self.__Method( _xuValue ) # Calcul MF
+ _HxValue = self.__Method( _xuArgs ) # Calcul MF
else:
- HxValue = self.__Method( _xuValue, self.__extraArgs ) # Calcul MF
+ _HxValue = self.__Method( _xuArgs, self.__extraArgs ) # Calcul MF
+ #
+ if returnSerieAsArrayMatrix:
+ _HxValue = numpy.stack([numpy.ravel(_hv) for _hv in _HxValue], axis=1)
#
- if argsAsSerie: return HxValue
- else: return HxValue[-1]
+ if argsAsSerie: return _HxValue
+ else: return _HxValue[-1]
- def appliedInXTo(self, paires, argsAsSerie = False ):
+ def appliedInXTo(self, paires, argsAsSerie = False, returnSerieAsArrayMatrix = False):
"""
Permet de restituer le résultat de l'application de l'opérateur à une
série d'arguments xValue, sachant que l'opérateur est valable en
PlatformInfo.isIterable( _nxValue, True, " in Operator.appliedInXTo" )
#
if self.__Matrix is not None:
- HxValue = []
+ _HxValue = []
for paire in _nxValue:
_xNominal, _xValue = paire
self.__addOneMatrixCall()
- HxValue.append( self.__Matrix * _xValue )
+ _HxValue.append( self.__Matrix * _xValue )
else:
self.__addOneMethodCall( len(_nxValue) )
if self.__extraArgs is None:
- HxValue = self.__Method( _nxValue ) # Calcul MF
+ _HxValue = self.__Method( _nxValue ) # Calcul MF
else:
- HxValue = self.__Method( _nxValue, self.__extraArgs ) # Calcul MF
+ _HxValue = self.__Method( _nxValue, self.__extraArgs ) # Calcul MF
#
- if argsAsSerie: return HxValue
- else: return HxValue[-1]
+ if returnSerieAsArrayMatrix:
+ _HxValue = numpy.stack([numpy.ravel(_hv) for _hv in _HxValue], axis=1)
+ #
+ if argsAsSerie: return _HxValue
+ else: return _HxValue[-1]
def asMatrix(self, ValueForMethodForm = "UnknownVoidValue", argsAsSerie = False):
"""
if self.__Matrix is not None:
self.__addOneMatrixCall()
mValue = [self.__Matrix,]
- elif ValueForMethodForm is not "UnknownVoidValue": # Ne pas utiliser "None"
+ elif not isinstance(ValueForMethodForm,str) or ValueForMethodForm != "UnknownVoidValue": # Ne pas utiliser "None"
mValue = []
if argsAsSerie:
self.__addOneMethodCall( len(ValueForMethodForm) )
__Parameters = {}
if (asDict is not None) and isinstance(asDict, dict):
__Parameters.update( asDict )
- if "DifferentialIncrement" in asDict:
- __Parameters["withIncrement"] = asDict["DifferentialIncrement"]
- if "CenteredFiniteDifference" in asDict:
- __Parameters["withCenteredDF"] = asDict["CenteredFiniteDifference"]
- if "EnableMultiProcessing" in asDict:
- __Parameters["withmpEnabled"] = asDict["EnableMultiProcessing"]
- if "NumberOfProcesses" in asDict:
- __Parameters["withmpWorkers"] = asDict["NumberOfProcesses"]
+ # Priorité à EnableMultiProcessingInDerivatives=True
+ if "EnableMultiProcessing" in __Parameters and __Parameters["EnableMultiProcessing"]:
+ __Parameters["EnableMultiProcessingInDerivatives"] = True
+ __Parameters["EnableMultiProcessingInEvaluation"] = False
+ if "EnableMultiProcessingInDerivatives" not in __Parameters:
+ __Parameters["EnableMultiProcessingInDerivatives"] = False
+ if __Parameters["EnableMultiProcessingInDerivatives"]:
+ __Parameters["EnableMultiProcessingInEvaluation"] = False
+ if "EnableMultiProcessingInEvaluation" not in __Parameters:
+ __Parameters["EnableMultiProcessingInEvaluation"] = False
+ if "withIncrement" in __Parameters: # Temporaire
+ __Parameters["DifferentialIncrement"] = __Parameters["withIncrement"]
#
if asScript is not None:
__Matrix, __Function = None, None
if asMatrix:
- __Matrix = ImportFromScript(asScript).getvalue( self.__name )
+ __Matrix = Interfaces.ImportFromScript(asScript).getvalue( self.__name )
elif asOneFunction:
- __Function = { "Direct":ImportFromScript(asScript).getvalue( "DirectOperator" ) }
+ __Function = { "Direct":Interfaces.ImportFromScript(asScript).getvalue( "DirectOperator" ) }
__Function.update({"useApproximatedDerivatives":True})
__Function.update(__Parameters)
elif asThreeFunctions:
__Function = {
- "Direct" :ImportFromScript(asScript).getvalue( "DirectOperator" ),
- "Tangent":ImportFromScript(asScript).getvalue( "TangentOperator" ),
- "Adjoint":ImportFromScript(asScript).getvalue( "AdjointOperator" ),
+ "Direct" :Interfaces.ImportFromScript(asScript).getvalue( "DirectOperator" ),
+ "Tangent":Interfaces.ImportFromScript(asScript).getvalue( "TangentOperator" ),
+ "Adjoint":Interfaces.ImportFromScript(asScript).getvalue( "AdjointOperator" ),
}
__Function.update(__Parameters)
else:
if isinstance(__Function, dict) and \
("useApproximatedDerivatives" in __Function) and bool(__Function["useApproximatedDerivatives"]) and \
("Direct" in __Function) and (__Function["Direct"] is not None):
- if "withCenteredDF" not in __Function: __Function["withCenteredDF"] = False
- if "withIncrement" not in __Function: __Function["withIncrement"] = 0.01
- if "withdX" not in __Function: __Function["withdX"] = None
- if "withAvoidingRedundancy" not in __Function: __Function["withAvoidingRedundancy"] = avoidRC
- if "withToleranceInRedundancy" not in __Function: __Function["withToleranceInRedundancy"] = 1.e-18
- if "withLenghtOfRedundancy" not in __Function: __Function["withLenghtOfRedundancy"] = -1
- if "withmpEnabled" not in __Function: __Function["withmpEnabled"] = False
- if "withmpWorkers" not in __Function: __Function["withmpWorkers"] = None
- if "withmfEnabled" not in __Function: __Function["withmfEnabled"] = inputAsMF
- from daNumerics.ApproximatedDerivatives import FDApproximation
- FDA = FDApproximation(
+ if "CenteredFiniteDifference" not in __Function: __Function["CenteredFiniteDifference"] = False
+ if "DifferentialIncrement" not in __Function: __Function["DifferentialIncrement"] = 0.01
+ if "withdX" not in __Function: __Function["withdX"] = None
+ if "withAvoidingRedundancy" not in __Function: __Function["withAvoidingRedundancy"] = avoidRC
+ if "withToleranceInRedundancy" not in __Function: __Function["withToleranceInRedundancy"] = 1.e-18
+ if "withLenghtOfRedundancy" not in __Function: __Function["withLenghtOfRedundancy"] = -1
+ if "NumberOfProcesses" not in __Function: __Function["NumberOfProcesses"] = None
+ if "withmfEnabled" not in __Function: __Function["withmfEnabled"] = inputAsMF
+ from daCore import NumericObjects
+ FDA = NumericObjects.FDApproximation(
+ name = self.__name,
Function = __Function["Direct"],
- centeredDF = __Function["withCenteredDF"],
- increment = __Function["withIncrement"],
+ centeredDF = __Function["CenteredFiniteDifference"],
+ increment = __Function["DifferentialIncrement"],
dX = __Function["withdX"],
avoidingRedundancy = __Function["withAvoidingRedundancy"],
toleranceInRedundancy = __Function["withToleranceInRedundancy"],
lenghtOfRedundancy = __Function["withLenghtOfRedundancy"],
- mpEnabled = __Function["withmpEnabled"],
- mpWorkers = __Function["withmpWorkers"],
+ mpEnabled = __Function["EnableMultiProcessingInDerivatives"],
+ mpWorkers = __Function["NumberOfProcesses"],
mfEnabled = __Function["withmfEnabled"],
)
- self.__FO["Direct"] = Operator( fromMethod = FDA.DirectOperator, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
- self.__FO["Tangent"] = Operator( fromMethod = FDA.TangentOperator, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
- self.__FO["Adjoint"] = Operator( fromMethod = FDA.AdjointOperator, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
+ self.__FO["Direct"] = Operator( name = self.__name, fromMethod = FDA.DirectOperator, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs, enableMultiProcess = __Parameters["EnableMultiProcessingInEvaluation"] )
+ self.__FO["Tangent"] = Operator( name = self.__name+"Tangent", fromMethod = FDA.TangentOperator, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
+ self.__FO["Adjoint"] = Operator( name = self.__name+"Adjoint", fromMethod = FDA.AdjointOperator, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
elif isinstance(__Function, dict) and \
("Direct" in __Function) and ("Tangent" in __Function) and ("Adjoint" in __Function) and \
(__Function["Direct"] is not None) and (__Function["Tangent"] is not None) and (__Function["Adjoint"] is not None):
- self.__FO["Direct"] = Operator( fromMethod = __Function["Direct"], avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
- self.__FO["Tangent"] = Operator( fromMethod = __Function["Tangent"], avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
- self.__FO["Adjoint"] = Operator( fromMethod = __Function["Adjoint"], avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
+ self.__FO["Direct"] = Operator( name = self.__name, fromMethod = __Function["Direct"], avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs, enableMultiProcess = __Parameters["EnableMultiProcessingInEvaluation"] )
+ self.__FO["Tangent"] = Operator( name = self.__name+"Tangent", fromMethod = __Function["Tangent"], avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
+ self.__FO["Adjoint"] = Operator( name = self.__name+"Adjoint", fromMethod = __Function["Adjoint"], avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, extraArguments = self.__extraArgs )
elif asMatrix is not None:
__matrice = numpy.matrix( __Matrix, numpy.float )
- self.__FO["Direct"] = Operator( fromMatrix = __matrice, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF )
- self.__FO["Tangent"] = Operator( fromMatrix = __matrice, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF )
- self.__FO["Adjoint"] = Operator( fromMatrix = __matrice.T, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF )
+ self.__FO["Direct"] = Operator( name = self.__name, fromMatrix = __matrice, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF, enableMultiProcess = __Parameters["EnableMultiProcessingInEvaluation"] )
+ self.__FO["Tangent"] = Operator( name = self.__name+"Tangent", fromMatrix = __matrice, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF )
+ self.__FO["Adjoint"] = Operator( name = self.__name+"Adjoint", fromMatrix = __matrice.T, avoidingRedundancy = avoidRC, inputAsMultiFunction = inputAsMF )
del __matrice
else:
- raise ValueError("Improperly defined observation operator, it requires at minima either a matrix, a Direct for approximate derivatives or a Tangent/Adjoint pair.")
+ raise ValueError("The %s object is improperly defined or undefined, it requires at minima either a matrix, a Direct operator for approximate derivatives or a Tangent/Adjoint operators pair. Please check your operator input."%self.__name)
#
if __appliedInX is not None:
self.__FO["AppliedInX"] = {}
def __repr__(self):
"x.__repr__() <==> repr(x)"
- return repr(self.__V)
+ return repr(self.__FO)
def __str__(self):
"x.__str__() <==> str(x)"
- return str(self.__V)
+ return str(self.__FO)
# ==============================================================================
class Algorithm(object):
- CostFunctionJbAtCurrentOptimum : partie ébauche à l'état optimal courant lors d'itérations
- CostFunctionJo : partie observations de la fonction-coût : Jo
- CostFunctionJoAtCurrentOptimum : partie observations à l'état optimal courant lors d'itérations
+ - CurrentIterationNumber : numéro courant d'itération dans les algorithmes itératifs, à partir de 0
- CurrentOptimum : état optimal courant lors d'itérations
- CurrentState : état courant lors d'itérations
- GradientOfCostFunctionJ : gradient de la fonction-coût globale
- MahalanobisConsistency : indicateur de consistance des covariances
- OMA : Observation moins Analyse : Y - Xa
- OMB : Observation moins Background : Y - Xb
- - PredictedState : état prédit courant lors d'itérations
+ - ForecastState : état prédit courant lors d'itérations
- Residu : dans le cas des algorithmes de vérification
- SigmaBck2 : indicateur de correction optimale des erreurs d'ébauche
- SigmaObs2 : indicateur de correction optimale des erreurs d'observation
self._name = str( name )
self._parameters = {"StoreSupplementaryCalculations":[]}
self.__required_parameters = {}
- self.__required_inputs = {"RequiredInputValues":{"mandatory":(), "optional":()}}
+ self.__required_inputs = {
+ "RequiredInputValues":{"mandatory":(), "optional":()},
+ "ClassificationTags":[],
+ }
+ self.__variable_names_not_public = {"nextStep":False} # Duplication dans AlgorithmAndParameters
+ self.__canonical_parameter_name = {} # Correspondance "lower"->"correct"
+ self.__canonical_stored_name = {} # Correspondance "lower"->"correct"
#
self.StoredVariables = {}
self.StoredVariables["APosterioriCorrelations"] = Persistence.OneMatrix(name = "APosterioriCorrelations")
self.StoredVariables["CostFunctionJbAtCurrentOptimum"] = Persistence.OneScalar(name = "CostFunctionJbAtCurrentOptimum")
self.StoredVariables["CostFunctionJo"] = Persistence.OneScalar(name = "CostFunctionJo")
self.StoredVariables["CostFunctionJoAtCurrentOptimum"] = Persistence.OneScalar(name = "CostFunctionJoAtCurrentOptimum")
+ self.StoredVariables["CurrentIterationNumber"] = Persistence.OneIndex(name = "CurrentIterationNumber")
self.StoredVariables["CurrentOptimum"] = Persistence.OneVector(name = "CurrentOptimum")
self.StoredVariables["CurrentState"] = Persistence.OneVector(name = "CurrentState")
+ self.StoredVariables["ForecastState"] = Persistence.OneVector(name = "ForecastState")
self.StoredVariables["GradientOfCostFunctionJ"] = Persistence.OneVector(name = "GradientOfCostFunctionJ")
self.StoredVariables["GradientOfCostFunctionJb"] = Persistence.OneVector(name = "GradientOfCostFunctionJb")
self.StoredVariables["GradientOfCostFunctionJo"] = Persistence.OneVector(name = "GradientOfCostFunctionJo")
- self.StoredVariables["IndexOfOptimum"] = Persistence.OneIndex(name = "IndexOfOptimum")
+ self.StoredVariables["IndexOfOptimum"] = Persistence.OneIndex(name = "IndexOfOptimum")
self.StoredVariables["Innovation"] = Persistence.OneVector(name = "Innovation")
+ self.StoredVariables["InnovationAtCurrentAnalysis"] = Persistence.OneVector(name = "InnovationAtCurrentAnalysis")
self.StoredVariables["InnovationAtCurrentState"] = Persistence.OneVector(name = "InnovationAtCurrentState")
self.StoredVariables["JacobianMatrixAtBackground"] = Persistence.OneMatrix(name = "JacobianMatrixAtBackground")
self.StoredVariables["JacobianMatrixAtCurrentState"] = Persistence.OneMatrix(name = "JacobianMatrixAtCurrentState")
self.StoredVariables["MahalanobisConsistency"] = Persistence.OneScalar(name = "MahalanobisConsistency")
self.StoredVariables["OMA"] = Persistence.OneVector(name = "OMA")
self.StoredVariables["OMB"] = Persistence.OneVector(name = "OMB")
- self.StoredVariables["PredictedState"] = Persistence.OneVector(name = "PredictedState")
self.StoredVariables["Residu"] = Persistence.OneScalar(name = "Residu")
self.StoredVariables["SigmaBck2"] = Persistence.OneScalar(name = "SigmaBck2")
self.StoredVariables["SigmaObs2"] = Persistence.OneScalar(name = "SigmaObs2")
self.StoredVariables["SimulatedObservationAtBackground"] = Persistence.OneVector(name = "SimulatedObservationAtBackground")
+ self.StoredVariables["SimulatedObservationAtCurrentAnalysis"]= Persistence.OneVector(name = "SimulatedObservationAtCurrentAnalysis")
self.StoredVariables["SimulatedObservationAtCurrentOptimum"] = Persistence.OneVector(name = "SimulatedObservationAtCurrentOptimum")
self.StoredVariables["SimulatedObservationAtCurrentState"] = Persistence.OneVector(name = "SimulatedObservationAtCurrentState")
self.StoredVariables["SimulatedObservationAtOptimum"] = Persistence.OneVector(name = "SimulatedObservationAtOptimum")
self.StoredVariables["SimulationQuantiles"] = Persistence.OneMatrix(name = "SimulationQuantiles")
+ #
+ for k in self.StoredVariables:
+ self.__canonical_stored_name[k.lower()] = k
+ #
+ for k, v in self.__variable_names_not_public.items():
+ self.__canonical_parameter_name[k.lower()] = k
+ self.__canonical_parameter_name["algorithm"] = "Algorithm"
+ self.__canonical_parameter_name["storesupplementarycalculations"] = "StoreSupplementaryCalculations"
- def _pre_run(self, Parameters, Xb=None, Y=None, R=None, B=None, Q=None ):
+ def _pre_run(self, Parameters, Xb=None, Y=None, U=None, HO=None, EM=None, CM=None, R=None, B=None, Q=None ):
"Pré-calcul"
logging.debug("%s Lancement", self._name)
- logging.debug("%s Taille mémoire utilisée de %.0f Mio", self._name, self._m.getUsedMemory("Mio"))
- #
- # Mise a jour de self._parameters avec Parameters
- self.__setParameters(Parameters)
- #
- # Corrections et complements
- def __test_vvalue(argument, variable, argname):
+ logging.debug("%s Taille mémoire utilisée de %.0f Mio"%(self._name, self._m.getUsedMemory("Mio")))
+ self._getTimeState(reset=True)
+ #
+ # Mise a jour des paramètres internes avec le contenu de Parameters, en
+ # reprenant les valeurs par défauts pour toutes celles non définies
+ self.__setParameters(Parameters, reset=True)
+ for k, v in self.__variable_names_not_public.items():
+ if k not in self._parameters: self.__setParameters( {k:v} )
+ #
+ # Corrections et compléments des vecteurs
+ def __test_vvalue(argument, variable, argname, symbol=None):
+ if symbol is None: symbol = variable
if argument is None:
if variable in self.__required_inputs["RequiredInputValues"]["mandatory"]:
- raise ValueError("%s %s vector %s has to be properly defined!"%(self._name,argname,variable))
+ raise ValueError("%s %s vector %s is not set and has to be properly defined!"%(self._name,argname,symbol))
elif variable in self.__required_inputs["RequiredInputValues"]["optional"]:
- logging.debug("%s %s vector %s is not set, but is optional."%(self._name,argname,variable))
+ logging.debug("%s %s vector %s is not set, but is optional."%(self._name,argname,symbol))
else:
- logging.debug("%s %s vector %s is not set, but is not required."%(self._name,argname,variable))
+ logging.debug("%s %s vector %s is not set, but is not required."%(self._name,argname,symbol))
else:
- logging.debug("%s %s vector %s is set, and its size is %i."%(self._name,argname,variable,numpy.array(argument).size))
+ logging.debug("%s %s vector %s is set, and its size is %i."%(self._name,argname,symbol,numpy.array(argument).size))
return 0
__test_vvalue( Xb, "Xb", "Background or initial state" )
__test_vvalue( Y, "Y", "Observation" )
+ __test_vvalue( U, "U", "Control" )
#
- def __test_cvalue(argument, variable, argname):
+ # Corrections et compléments des covariances
+ def __test_cvalue(argument, variable, argname, symbol=None):
+ if symbol is None: symbol = variable
if argument is None:
if variable in self.__required_inputs["RequiredInputValues"]["mandatory"]:
- raise ValueError("%s %s error covariance matrix %s has to be properly defined!"%(self._name,argname,variable))
+ raise ValueError("%s %s error covariance matrix %s is not set and has to be properly defined!"%(self._name,argname,symbol))
elif variable in self.__required_inputs["RequiredInputValues"]["optional"]:
- logging.debug("%s %s error covariance matrix %s is not set, but is optional."%(self._name,argname,variable))
+ logging.debug("%s %s error covariance matrix %s is not set, but is optional."%(self._name,argname,symbol))
else:
- logging.debug("%s %s error covariance matrix %s is not set, but is not required."%(self._name,argname,variable))
+ logging.debug("%s %s error covariance matrix %s is not set, but is not required."%(self._name,argname,symbol))
else:
- logging.debug("%s %s error covariance matrix %s is set."%(self._name,argname,variable))
+ logging.debug("%s %s error covariance matrix %s is set."%(self._name,argname,symbol))
return 0
- __test_cvalue( R, "R", "Observation" )
__test_cvalue( B, "B", "Background" )
+ __test_cvalue( R, "R", "Observation" )
__test_cvalue( Q, "Q", "Evolution" )
#
+ # Corrections et compléments des opérateurs
+ def __test_ovalue(argument, variable, argname, symbol=None):
+ if symbol is None: symbol = variable
+ if argument is None or (isinstance(argument,dict) and len(argument)==0):
+ if variable in self.__required_inputs["RequiredInputValues"]["mandatory"]:
+ raise ValueError("%s %s operator %s is not set and has to be properly defined!"%(self._name,argname,symbol))
+ elif variable in self.__required_inputs["RequiredInputValues"]["optional"]:
+ logging.debug("%s %s operator %s is not set, but is optional."%(self._name,argname,symbol))
+ else:
+ logging.debug("%s %s operator %s is not set, but is not required."%(self._name,argname,symbol))
+ else:
+ logging.debug("%s %s operator %s is set."%(self._name,argname,symbol))
+ return 0
+ __test_ovalue( HO, "HO", "Observation", "H" )
+ __test_ovalue( EM, "EM", "Evolution", "M" )
+ __test_ovalue( CM, "CM", "Control Model", "C" )
+ #
if ("Bounds" in self._parameters) and isinstance(self._parameters["Bounds"], (list, tuple)) and (len(self._parameters["Bounds"]) > 0):
logging.debug("%s Prise en compte des bornes effectuee"%(self._name,))
else:
_EI = numpy.diag(1./numpy.sqrt(numpy.diag(_A)))
_C = numpy.dot(_EI, numpy.dot(_A, _EI))
self.StoredVariables["APosterioriCorrelations"].store( _C )
- if _oH is not None:
+ if _oH is not None and "Direct" in _oH and "Tangent" in _oH and "Adjoint" in _oH:
logging.debug("%s Nombre d'évaluation(s) de l'opérateur d'observation direct/tangent/adjoint.: %i/%i/%i", self._name, _oH["Direct"].nbcalls(0),_oH["Tangent"].nbcalls(0),_oH["Adjoint"].nbcalls(0))
logging.debug("%s Nombre d'appels au cache d'opérateur d'observation direct/tangent/adjoint..: %i/%i/%i", self._name, _oH["Direct"].nbcalls(3),_oH["Tangent"].nbcalls(3),_oH["Adjoint"].nbcalls(3))
logging.debug("%s Taille mémoire utilisée de %.0f Mio", self._name, self._m.getUsedMemory("Mio"))
+ logging.debug("%s Durées d'utilisation CPU de %.1fs et elapsed de %.1fs", self._name, self._getTimeState()[0], self._getTimeState()[1])
logging.debug("%s Terminé", self._name)
return 0
des classes de persistance.
"""
if key is not None:
- return self.StoredVariables[key]
+ return self.StoredVariables[self.__canonical_stored_name[key.lower()]]
else:
return self.StoredVariables
def __contains__(self, key=None):
"D.__contains__(k) -> True if D has a key k, else False"
- return key in self.StoredVariables
+ if key is None or key.lower() not in self.__canonical_stored_name:
+ return False
+ else:
+ return self.__canonical_stored_name[key.lower()] in self.StoredVariables
def keys(self):
"D.keys() -> list of D's keys"
def pop(self, k, d):
"D.pop(k[,d]) -> v, remove specified key and return the corresponding value"
- if hasattr(self, "StoredVariables"):
- return self.StoredVariables.pop(k, d)
+ if hasattr(self, "StoredVariables") and k.lower() in self.__canonical_stored_name:
+ return self.StoredVariables.pop(self.__canonical_stored_name[k.lower()], d)
else:
try:
msg = "'%s'"%k
"""
raise NotImplementedError("Mathematical assimilation calculation has not been implemented!")
- def defineRequiredParameter(self, name = None, default = None, typecast = None, message = None, minval = None, maxval = None, listval = None):
+ def defineRequiredParameter(self, name = None, default = None, typecast = None, message = None, minval = None, maxval = None, listval = None, listadv = None):
"""
Permet de définir dans l'algorithme des paramètres requis et leurs
caractéristiques par défaut.
"minval" : minval,
"maxval" : maxval,
"listval" : listval,
+ "listadv" : listadv,
"message" : message,
}
+ self.__canonical_parameter_name[name.lower()] = name
logging.debug("%s %s (valeur par défaut = %s)", self._name, message, self.setParameterValue(name))
def getRequiredParameters(self, noDetails=True):
"""
Renvoie la valeur d'un paramètre requis de manière contrôlée
"""
- default = self.__required_parameters[name]["default"]
- typecast = self.__required_parameters[name]["typecast"]
- minval = self.__required_parameters[name]["minval"]
- maxval = self.__required_parameters[name]["maxval"]
- listval = self.__required_parameters[name]["listval"]
+ __k = self.__canonical_parameter_name[name.lower()]
+ default = self.__required_parameters[__k]["default"]
+ typecast = self.__required_parameters[__k]["typecast"]
+ minval = self.__required_parameters[__k]["minval"]
+ maxval = self.__required_parameters[__k]["maxval"]
+ listval = self.__required_parameters[__k]["listval"]
+ listadv = self.__required_parameters[__k]["listadv"]
#
if value is None and default is None:
__val = None
else: __val = typecast( default )
else:
if typecast is None: __val = value
- else: __val = typecast( value )
+ else:
+ try:
+ __val = typecast( value )
+ except:
+ raise ValueError("The value '%s' for the parameter named '%s' can not be correctly evaluated with type '%s'."%(value, __k, typecast))
#
if minval is not None and (numpy.array(__val, float) < minval).any():
- raise ValueError("The parameter named \"%s\" of value \"%s\" can not be less than %s."%(name, __val, minval))
+ raise ValueError("The parameter named '%s' of value '%s' can not be less than %s."%(__k, __val, minval))
if maxval is not None and (numpy.array(__val, float) > maxval).any():
- raise ValueError("The parameter named \"%s\" of value \"%s\" can not be greater than %s."%(name, __val, maxval))
- if listval is not None:
+ raise ValueError("The parameter named '%s' of value '%s' can not be greater than %s."%(__k, __val, maxval))
+ if listval is not None or listadv is not None:
if typecast is list or typecast is tuple or isinstance(__val,list) or isinstance(__val,tuple):
for v in __val:
- if v not in listval:
- raise ValueError("The value \"%s\" of the parameter named \"%s\" is not allowed, it has to be in the list %s."%(v, name, listval))
- elif __val not in listval:
- raise ValueError("The value \"%s\" of the parameter named \"%s\" is not allowed, it has to be in the list %s."%( __val, name,listval))
+ if listval is not None and v in listval: continue
+ elif listadv is not None and v in listadv: continue
+ else:
+ raise ValueError("The value '%s' is not allowed for the parameter named '%s', it has to be in the list %s."%(v, __k, listval))
+ elif not (listval is not None and __val in listval) and not (listadv is not None and __val in listadv):
+ raise ValueError("The value '%s' is not allowed for the parameter named '%s', it has to be in the list %s."%( __val, __k,listval))
+ #
return __val
def requireInputArguments(self, mandatory=(), optional=()):
"""
- Permet d'imposer des arguments requises en entrée
+ Permet d'imposer des arguments de calcul requis en entrée.
"""
self.__required_inputs["RequiredInputValues"]["mandatory"] = tuple( mandatory )
self.__required_inputs["RequiredInputValues"]["optional"] = tuple( optional )
- def __setParameters(self, fromDico={}):
+ def getInputArguments(self):
+ """
+ Permet d'obtenir les listes des arguments de calcul requis en entrée.
+ """
+ return self.__required_inputs["RequiredInputValues"]["mandatory"], self.__required_inputs["RequiredInputValues"]["optional"]
+
+ def setAttributes(self, tags=()):
+ """
+ Permet d'adjoindre des attributs comme les tags de classification.
+ Renvoie la liste actuelle dans tous les cas.
+ """
+ self.__required_inputs["ClassificationTags"].extend( tags )
+ return self.__required_inputs["ClassificationTags"]
+
+ def __setParameters(self, fromDico={}, reset=False):
"""
Permet de stocker les paramètres reçus dans le dictionnaire interne.
"""
self._parameters.update( fromDico )
+ __inverse_fromDico_keys = {}
+ for k in fromDico.keys():
+ if k.lower() in self.__canonical_parameter_name:
+ __inverse_fromDico_keys[self.__canonical_parameter_name[k.lower()]] = k
+ #~ __inverse_fromDico_keys = dict([(self.__canonical_parameter_name[k.lower()],k) for k in fromDico.keys()])
+ __canonic_fromDico_keys = __inverse_fromDico_keys.keys()
for k in self.__required_parameters.keys():
- if k in fromDico.keys():
- self._parameters[k] = self.setParameterValue(k,fromDico[k])
- else:
+ if k in __canonic_fromDico_keys:
+ self._parameters[k] = self.setParameterValue(k,fromDico[__inverse_fromDico_keys[k]])
+ elif reset:
self._parameters[k] = self.setParameterValue(k)
+ else:
+ pass
logging.debug("%s %s : %s", self._name, self.__required_parameters[k]["message"], self._parameters[k])
+ def _getTimeState(self, reset=False):
+ """
+ Initialise ou restitue le temps de calcul (cpu/elapsed) à la seconde
+ """
+ if reset:
+ self.__initial_cpu_time = time.process_time()
+ self.__initial_elapsed_time = time.perf_counter()
+ return 0., 0.
+ else:
+ self.__cpu_time = time.process_time() - self.__initial_cpu_time
+ self.__elapsed_time = time.perf_counter() - self.__initial_elapsed_time
+ return self.__cpu_time, self.__elapsed_time
+
+ def _StopOnTimeLimit(self, X=None, withReason=False):
+ "Stop criteria on time limit: True/False [+ Reason]"
+ c, e = self._getTimeState()
+ if "MaximumCpuTime" in self._parameters and c > self._parameters["MaximumCpuTime"]:
+ __SC, __SR = True, "Reached maximum CPU time (%.1fs > %.1fs)"%(c, self._parameters["MaximumCpuTime"])
+ elif "MaximumElapsedTime" in self._parameters and e > self._parameters["MaximumElapsedTime"]:
+ __SC, __SR = True, "Reached maximum elapsed time (%.1fs > %.1fs)"%(e, self._parameters["MaximumElapsedTime"])
+ else:
+ __SC, __SR = False, ""
+ if withReason:
+ return __SC, __SR
+ else:
+ return __SC
+
# ==============================================================================
class AlgorithmAndParameters(object):
"""
self.updateParameters( asDict, asScript )
#
if asAlgorithm is None and asScript is not None:
- __Algo = ImportFromScript(asScript).getvalue( "Algorithm" )
+ __Algo = Interfaces.ImportFromScript(asScript).getvalue( "Algorithm" )
else:
__Algo = asAlgorithm
#
self.__P.update( {"Algorithm":self.__A} )
#
self.__setAlgorithm( self.__A )
+ #
+ self.__variable_names_not_public = {"nextStep":False} # Duplication dans Algorithm
def updateParameters(self,
asDict = None,
):
"Mise a jour des parametres"
if asDict is None and asScript is not None:
- __Dict = ImportFromScript(asScript).getvalue( self.__name, "Parameters" )
+ __Dict = Interfaces.ImportFromScript(asScript).getvalue( self.__name, "Parameters" )
else:
__Dict = asDict
#
elif key in self.__P:
return self.__P[key]
else:
- return self.__P
+ allvariables = self.__P
+ for k in self.__variable_names_not_public: allvariables.pop(k, None)
+ return allvariables
def pop(self, k, d):
"Necessaire pour le pickling"
"Renvoie la liste des paramètres requis selon l'algorithme"
return self.__algorithm.getRequiredParameters(noDetails)
+ def getAlgorithmInputArguments(self):
+ "Renvoie la liste des entrées requises selon l'algorithme"
+ return self.__algorithm.getInputArguments()
+
+ def getAlgorithmAttributes(self):
+ "Renvoie la liste des attributs selon l'algorithme"
+ return self.__algorithm.setAttributes()
+
def setObserver(self, __V, __O, __I, __S):
if self.__algorithm is None \
or isinstance(self.__algorithm, dict) \
return self.__algorithm.StoredVariables[ __V ].hasDataObserver()
def keys(self):
- return list(self.__algorithm.keys()) + list(self.__P.keys())
+ __allvariables = list(self.__algorithm.keys()) + list(self.__P.keys())
+ for k in self.__variable_names_not_public:
+ if k in __allvariables: __allvariables.remove(k)
+ return __allvariables
def __contains__(self, key=None):
"D.__contains__(k) -> True if D has a key k, else False"
self.__P = {}
#
if asAlgorithm is None and asScript is not None:
- __Algo = ImportFromScript(asScript).getvalue( "Algorithm" )
+ __Algo = Interfaces.ImportFromScript(asScript).getvalue( "Algorithm" )
else:
__Algo = asAlgorithm
#
if asDict is None and asScript is not None:
- __Dict = ImportFromScript(asScript).getvalue( self.__name, "Parameters" )
+ __Dict = Interfaces.ImportFromScript(asScript).getvalue( self.__name, "Parameters" )
else:
__Dict = asDict
#
self.__P.update( dict(__Dict) )
#
if __Algo is not None:
- self.__P.update( {"Algorithm":self.__A} )
+ self.__P.update( {"Algorithm":str(__Algo)} )
def get(self, key = None):
"Vérifie l'existence d'une clé de variable ou de paramètres"
else:
raise ValueError("setting an observer has to be done over a variable name or a list of variable names.")
#
- if asString is not None:
- __FunctionText = asString
- elif (asTemplate is not None) and (asTemplate in Templates.ObserverTemplates):
- __FunctionText = Templates.ObserverTemplates[asTemplate]
- elif asScript is not None:
- __FunctionText = ImportFromScript(asScript).getstring()
- else:
- __FunctionText = ""
- __Function = ObserverF(__FunctionText)
- #
if asObsObject is not None:
self.__O = asObsObject
else:
+ __FunctionText = str(UserScript('Observer', asTemplate, asString, asScript))
+ __Function = Observer2Func(__FunctionText)
self.__O = __Function.getfunc()
#
for k in range(len(self.__V)):
"x.__str__() <==> str(x)"
return str(self.__V)+"\n"+str(self.__O)
+# ==============================================================================
+class UserScript(object):
+ """
+ Classe générale d'interface de type texte de script utilisateur
+ """
+ def __init__(self,
+ name = "GenericUserScript",
+ asTemplate = None,
+ asString = None,
+ asScript = None,
+ ):
+ """
+ """
+ self.__name = str(name)
+ #
+ if asString is not None:
+ self.__F = asString
+ elif self.__name == "UserPostAnalysis" and (asTemplate is not None) and (asTemplate in Templates.UserPostAnalysisTemplates):
+ self.__F = Templates.UserPostAnalysisTemplates[asTemplate]
+ elif self.__name == "Observer" and (asTemplate is not None) and (asTemplate in Templates.ObserverTemplates):
+ self.__F = Templates.ObserverTemplates[asTemplate]
+ elif asScript is not None:
+ self.__F = Interfaces.ImportFromScript(asScript).getstring()
+ else:
+ self.__F = ""
+
+ def __repr__(self):
+ "x.__repr__() <==> repr(x)"
+ return repr(self.__F)
+
+ def __str__(self):
+ "x.__str__() <==> str(x)"
+ return str(self.__F)
+
+# ==============================================================================
+class ExternalParameters(object):
+ """
+ Classe générale d'interface de type texte de script utilisateur
+ """
+ def __init__(self,
+ name = "GenericExternalParameters",
+ asDict = None,
+ asScript = None,
+ ):
+ """
+ """
+ self.__name = str(name)
+ self.__P = {}
+ #
+ self.updateParameters( asDict, asScript )
+
+ def updateParameters(self,
+ asDict = None,
+ asScript = None,
+ ):
+ "Mise a jour des parametres"
+ if asDict is None and asScript is not None:
+ __Dict = Interfaces.ImportFromScript(asScript).getvalue( self.__name, "ExternalParameters" )
+ else:
+ __Dict = asDict
+ #
+ if __Dict is not None:
+ self.__P.update( dict(__Dict) )
+
+ def get(self, key = None):
+ if key in self.__P:
+ return self.__P[key]
+ else:
+ return list(self.__P.keys())
+
+ def keys(self):
+ return list(self.__P.keys())
+
+ def pop(self, k, d):
+ return self.__P.pop(k, d)
+
+ def items(self):
+ return self.__P.items()
+
+ def __contains__(self, key=None):
+ "D.__contains__(k) -> True if D has a key k, else False"
+ return key in self.__P
+
# ==============================================================================
class State(object):
"""
contenant des valeurs en colonnes, elles-mêmes nommées "colNames"
(s'il n'y a pas de nom de colonne indiquée, on cherche une colonne
nommée "name"), on récupère les colonnes et on les range ligne après
- ligne (colMajor=False) ou colonne après colonne (colMajor=True). La
- variable résultante est de type "asVector" (par défaut) ou
- "asPersistentVector" selon que l'une de ces variables est placée à
- "True".
+ ligne (colMajor=False, par défaut) ou colonne après colonne
+ (colMajor=True). La variable résultante est de type "asVector" (par
+ défaut) ou "asPersistentVector" selon que l'une de ces variables est
+ placée à "True".
"""
self.__name = str(name)
self.__check = bool(toBeChecked)
if asScript is not None:
__Vector, __Series = None, None
if asPersistentVector:
- __Series = ImportFromScript(asScript).getvalue( self.__name )
+ __Series = Interfaces.ImportFromScript(asScript).getvalue( self.__name )
else:
- __Vector = ImportFromScript(asScript).getvalue( self.__name )
+ __Vector = Interfaces.ImportFromScript(asScript).getvalue( self.__name )
elif asDataFile is not None:
__Vector, __Series = None, None
if asPersistentVector:
if colNames is not None:
- __Series = ImportFromFile(asDataFile).getvalue( colNames )[1]
+ __Series = Interfaces.ImportFromFile(asDataFile).getvalue( colNames )[1]
else:
- __Series = ImportFromFile(asDataFile).getvalue( [self.__name,] )[1]
- if bool(colMajor) and not ImportFromFile(asDataFile).getformat() == "application/numpy.npz":
+ __Series = Interfaces.ImportFromFile(asDataFile).getvalue( [self.__name,] )[1]
+ if bool(colMajor) and not Interfaces.ImportFromFile(asDataFile).getformat() == "application/numpy.npz":
__Series = numpy.transpose(__Series)
- elif not bool(colMajor) and ImportFromFile(asDataFile).getformat() == "application/numpy.npz":
+ elif not bool(colMajor) and Interfaces.ImportFromFile(asDataFile).getformat() == "application/numpy.npz":
__Series = numpy.transpose(__Series)
else:
if colNames is not None:
- __Vector = ImportFromFile(asDataFile).getvalue( colNames )[1]
+ __Vector = Interfaces.ImportFromFile(asDataFile).getvalue( colNames )[1]
else:
- __Vector = ImportFromFile(asDataFile).getvalue( [self.__name,] )[1]
+ __Vector = Interfaces.ImportFromFile(asDataFile).getvalue( [self.__name,] )[1]
if bool(colMajor):
__Vector = numpy.ravel(__Vector, order = "F")
else:
self.shape = (self.shape[0],1)
self.size = self.shape[0] * self.shape[1]
else:
- raise ValueError("The %s object is improperly defined, it requires at minima either a vector, a list/tuple of vectors or a persistent object. Please check your vector input."%self.__name)
+ raise ValueError("The %s object is improperly defined or undefined, it requires at minima either a vector, a list/tuple of vectors or a persistent object. Please check your vector input."%self.__name)
#
if scheduledBy is not None:
self.__T = scheduledBy
if asScript is not None:
__Matrix, __Scalar, __Vector, __Object = None, None, None, None
if asEyeByScalar:
- __Scalar = ImportFromScript(asScript).getvalue( self.__name )
+ __Scalar = Interfaces.ImportFromScript(asScript).getvalue( self.__name )
elif asEyeByVector:
- __Vector = ImportFromScript(asScript).getvalue( self.__name )
+ __Vector = Interfaces.ImportFromScript(asScript).getvalue( self.__name )
elif asCovObject:
- __Object = ImportFromScript(asScript).getvalue( self.__name )
+ __Object = Interfaces.ImportFromScript(asScript).getvalue( self.__name )
else:
- __Matrix = ImportFromScript(asScript).getvalue( self.__name )
+ __Matrix = Interfaces.ImportFromScript(asScript).getvalue( self.__name )
else:
__Matrix, __Scalar, __Vector, __Object = asCovariance, asEyeByScalar, asEyeByVector, asCovObject
#
elif self.isobject() and hasattr(self.__C,"choleskyI"):
return Covariance(self.__name+"H", asCovObject = self.__C.choleskyI() )
+ def sqrtm(self):
+ "Racine carrée matricielle"
+ if self.ismatrix():
+ import scipy
+ return Covariance(self.__name+"C", asCovariance = scipy.linalg.sqrtm(self.__C) )
+ elif self.isvector():
+ return Covariance(self.__name+"C", asEyeByVector = numpy.sqrt( self.__C ) )
+ elif self.isscalar():
+ return Covariance(self.__name+"C", asEyeByScalar = numpy.sqrt( self.__C ) )
+ elif self.isobject() and hasattr(self.__C,"sqrt"):
+ return Covariance(self.__name+"C", asCovObject = self.__C.sqrt() )
+
+ def sqrtmI(self):
+ "Inversion de la racine carrée matricielle"
+ if self.ismatrix():
+ import scipy
+ return Covariance(self.__name+"H", asCovariance = scipy.linalg.sqrtm(self.__C).I )
+ elif self.isvector():
+ return Covariance(self.__name+"H", asEyeByVector = 1.0 / numpy.sqrt( self.__C ) )
+ elif self.isscalar():
+ return Covariance(self.__name+"H", asEyeByScalar = 1.0 / numpy.sqrt( self.__C ) )
+ elif self.isobject() and hasattr(self.__C,"sqrtI"):
+ return Covariance(self.__name+"H", asCovObject = self.__C.sqrtI() )
+
def diag(self, msize=None):
"Diagonale de la matrice"
if self.ismatrix():
return self.shape[0]
# ==============================================================================
-class ObserverF(object):
+class Observer2Func(object):
"""
Creation d'une fonction d'observateur a partir de son texte
"""
return __formater.load(__filename, __content, __object)
# ==============================================================================
-def MultiFonction( __xserie, _extraArguments = None, _sFunction = lambda x: x ):
+def MultiFonction(
+ __xserie,
+ _extraArguments = None,
+ _sFunction = lambda x: x,
+ _mpEnabled = False,
+ _mpWorkers = None,
+ ):
"""
Pour une liste ordonnée de vecteurs en entrée, renvoie en sortie la liste
correspondante de valeurs de la fonction en argument
"""
+ # Vérifications et définitions initiales
+ # logging.debug("MULTF Internal multifonction calculations begin with function %s"%(_sFunction.__name__,))
if not PlatformInfo.isIterable( __xserie ):
raise TypeError("MultiFonction not iterable unkown input type: %s"%(type(__xserie),))
+ if _mpEnabled:
+ if (_mpWorkers is None) or (_mpWorkers is not None and _mpWorkers < 1):
+ __mpWorkers = None
+ else:
+ __mpWorkers = int(_mpWorkers)
+ try:
+ import multiprocessing
+ __mpEnabled = True
+ except ImportError:
+ __mpEnabled = False
+ else:
+ __mpEnabled = False
+ __mpWorkers = None
#
- __multiHX = []
- if _extraArguments is None:
- for __xvalue in __xserie:
- __multiHX.append( _sFunction( __xvalue ) )
- elif _extraArguments is not None and isinstance(_extraArguments, (list, tuple, map)):
- for __xvalue in __xserie:
- __multiHX.append( _sFunction( __xvalue, *_extraArguments ) )
- elif _extraArguments is not None and isinstance(_extraArguments, dict):
- for __xvalue in __xserie:
- __multiHX.append( _sFunction( __xvalue, **_extraArguments ) )
+ # Calculs effectifs
+ if __mpEnabled:
+ _jobs = []
+ if _extraArguments is None:
+ _jobs = __xserie
+ elif _extraArguments is not None and isinstance(_extraArguments, (list, tuple, map)):
+ for __xvalue in __xserie:
+ _jobs.append( [__xvalue, ] + list(_extraArguments) )
+ else:
+ raise TypeError("MultiFonction extra arguments unkown input type: %s"%(type(_extraArguments),))
+ # logging.debug("MULTF Internal multiprocessing calculations begin : evaluation of %i point(s)"%(len(_jobs),))
+ import multiprocessing
+ with multiprocessing.Pool(__mpWorkers) as pool:
+ __multiHX = pool.map( _sFunction, _jobs )
+ pool.close()
+ pool.join()
+ # logging.debug("MULTF Internal multiprocessing calculation end")
else:
- raise TypeError("MultiFonction extra arguments unkown input type: %s"%(type(_extraArguments),))
+ # logging.debug("MULTF Internal monoprocessing calculation begin")
+ __multiHX = []
+ if _extraArguments is None:
+ for __xvalue in __xserie:
+ __multiHX.append( _sFunction( __xvalue ) )
+ elif _extraArguments is not None and isinstance(_extraArguments, (list, tuple, map)):
+ for __xvalue in __xserie:
+ __multiHX.append( _sFunction( __xvalue, *_extraArguments ) )
+ elif _extraArguments is not None and isinstance(_extraArguments, dict):
+ for __xvalue in __xserie:
+ __multiHX.append( _sFunction( __xvalue, **_extraArguments ) )
+ else:
+ raise TypeError("MultiFonction extra arguments unkown input type: %s"%(type(_extraArguments),))
+ # logging.debug("MULTF Internal monoprocessing calculation end")
#
+ # logging.debug("MULTF Internal multifonction calculations end")
return __multiHX
# ==============================================================================
# ==============================================================================
if __name__ == "__main__":
- print('\n AUTODIAGNOSTIC \n')
+ print('\n AUTODIAGNOSTIC\n')
