-#-*-coding:iso-8859-1-*-
+# -*- coding: utf-8 -*-
#
-# Copyright (C) 2008-2014 EDF R&D
+# Copyright (C) 2008-2018 EDF R&D
#
-# This library is free software; you can redistribute it and/or
-# modify it under the terms of the GNU Lesser General Public
-# License as published by the Free Software Foundation; either
-# version 2.1 of the License.
+# This library is free software; you can redistribute it and/or
+# modify it under the terms of the GNU Lesser General Public
+# License as published by the Free Software Foundation; either
+# version 2.1 of the License.
#
-# This library is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-# Lesser General Public License for more details.
+# This library is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# Lesser General Public License for more details.
#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this library; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+# You should have received a copy of the GNU Lesser General Public
+# License along with this library; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
-# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
+# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
#
-# Author: Jean-Philippe Argaud, jean-philippe.argaud@edf.fr, EDF R&D
+# Author: Jean-Philippe Argaud, jean-philippe.argaud@edf.fr, EDF R&D
import logging
from daCore import BasicObjects
name = "StoreInternalVariables",
default = False,
typecast = bool,
- message = "Stockage des variables internes ou intermédiaires du calcul",
+ message = "Stockage des variables internes ou intermédiaires du calcul",
)
self.defineRequiredParameter(
name = "StoreSupplementaryCalculations",
default = [],
typecast = tuple,
- message = "Liste de calculs supplémentaires à stocker et/ou effectuer",
- listval = ["APosterioriCovariance", "BMA", "OMA", "OMB", "Innovation", "SigmaBck2", "SigmaObs2", "MahalanobisConsistency", "SimulationQuantiles"]
+ message = "Liste de calculs supplémentaires à stocker et/ou effectuer",
+ listval = [
+ "APosterioriCorrelations",
+ "APosterioriCovariance",
+ "APosterioriStandardDeviations",
+ "APosterioriVariances",
+ "BMA",
+ "OMA",
+ "OMB",
+ "CurrentState",
+ "CostFunctionJ",
+ "CostFunctionJb",
+ "CostFunctionJo",
+ "Innovation",
+ "SigmaBck2",
+ "SigmaObs2",
+ "MahalanobisConsistency",
+ "SimulationQuantiles",
+ "SimulatedObservationAtBackground",
+ "SimulatedObservationAtCurrentState",
+ "SimulatedObservationAtOptimum",
+ ]
)
self.defineRequiredParameter(
name = "Quantiles",
self.defineRequiredParameter(
name = "SetSeed",
typecast = numpy.random.seed,
- message = "Graine fixée pour le générateur aléatoire",
+ message = "Graine fixée pour le générateur aléatoire",
)
self.defineRequiredParameter(
name = "NumberOfSamplesForQuantiles",
default = 100,
typecast = int,
- message = "Nombre d'échantillons simulés pour le calcul des quantiles",
+ message = "Nombre d'échantillons simulés pour le calcul des quantiles",
minval = 1,
)
self.defineRequiredParameter(
message = "Type de simulation pour l'estimation des quantiles",
listval = ["Linear", "NonLinear"]
)
+ self.requireInputArguments(
+ mandatory= ("Xb", "Y", "HO", "R", "B"),
+ )
def run(self, Xb=None, Y=None, U=None, HO=None, EM=None, CM=None, R=None, B=None, Q=None, Parameters=None):
- self._pre_run()
- #
- # Paramètres de pilotage
- # ----------------------
- self.setParameters(Parameters)
+ self._pre_run(Parameters, Xb, Y, R, B, Q)
#
- # Opérateur d'observation
- # -----------------------
Hm = HO["Tangent"].asMatrix(Xb)
Hm = Hm.reshape(Y.size,Xb.size) # ADAO & check shape
Ha = HO["Adjoint"].asMatrix(Xb)
Ha = Ha.reshape(Xb.size,Y.size) # ADAO & check shape
#
- # Utilisation éventuelle d'un vecteur H(Xb) précalculé
+ # Utilisation éventuelle d'un vecteur H(Xb) précalculé
# ----------------------------------------------------
- if HO["AppliedToX"] is not None and HO["AppliedToX"].has_key("HXb"):
- HXb = HO["AppliedToX"]["HXb"]
+ if HO["AppliedInX"] is not None and "HXb" in HO["AppliedInX"]:
+ HXb = HO["AppliedInX"]["HXb"]
else:
HXb = Hm * Xb
HXb = numpy.asmatrix(numpy.ravel( HXb )).T
+ if Y.size != HXb.size:
+ raise ValueError("The size %i of observations Y and %i of observed calculation H(X) are different, they have to be identical."%(Y.size,HXb.size))
+ if max(Y.shape) != max(HXb.shape):
+ raise ValueError("The shapes %s of observations Y and %s of observed calculation H(X) are different, they have to be identical."%(Y.shape,HXb.shape))
#
- # Précalcul des inversions de B et R
+ # Précalcul des inversions de B et R
# ----------------------------------
BI = B.getI()
RI = R.getI()
#
# Calcul de l'innovation
# ----------------------
- if Y.size != HXb.size:
- raise ValueError("The size %i of observations Y and %i of observed calculation H(X) are different, they have to be identical."%(Y.size,HXb.size))
- if max(Y.shape) != max(HXb.shape):
- raise ValueError("The shapes %s of observations Y and %s of observed calculation H(X) are different, they have to be identical."%(Y.shape,HXb.shape))
d = Y - HXb
#
# Calcul de la matrice de gain et de l'analyse
# --------------------------------------------
if Y.size <= Xb.size:
- if Y.size > 100: # len(R)
- _A = R + Hm * B * Ha
- _u = numpy.linalg.solve( _A , d )
- Xa = Xb + B * Ha * _u
- else:
- K = B * Ha * (R + Hm * B * Ha).I
- Xa = Xb + K*d
+ _A = R + Hm * B * Ha
+ _u = numpy.linalg.solve( _A , d )
+ Xa = Xb + B * Ha * _u
else:
- if Y.size > 100: # len(R)
- _A = BI + Ha * RI * Hm
- _u = numpy.linalg.solve( _A , Ha * RI * d )
- Xa = Xb + _u
- else:
- K = (BI + Ha * RI * Hm).I * Ha * RI
- Xa = Xb + K*d
+ _A = BI + Ha * RI * Hm
+ _u = numpy.linalg.solve( _A , Ha * RI * d )
+ Xa = Xb + _u
self.StoredVariables["Analysis"].store( Xa.A1 )
#
- # Calcul de la fonction coût
+ # Calcul de la fonction coût
# --------------------------
if self._parameters["StoreInternalVariables"] or \
- "OMA" in self._parameters["StoreSupplementaryCalculations"] or \
- "SigmaObs2" in self._parameters["StoreSupplementaryCalculations"] or \
- "MahalanobisConsistency" in self._parameters["StoreSupplementaryCalculations"] or \
- "SimulationQuantiles" in self._parameters["StoreSupplementaryCalculations"]:
+ "CostFunctionJ" in self._parameters["StoreSupplementaryCalculations"] or \
+ "OMA" in self._parameters["StoreSupplementaryCalculations"] or \
+ "SigmaObs2" in self._parameters["StoreSupplementaryCalculations"] or \
+ "MahalanobisConsistency" in self._parameters["StoreSupplementaryCalculations"] or \
+ "SimulatedObservationAtCurrentState" in self._parameters["StoreSupplementaryCalculations"] or \
+ "SimulatedObservationAtOptimum" in self._parameters["StoreSupplementaryCalculations"] or \
+ "SimulationQuantiles" in self._parameters["StoreSupplementaryCalculations"]:
HXa = Hm * Xa
oma = Y - HXa
if self._parameters["StoreInternalVariables"] or \
- "MahalanobisConsistency" in self._parameters["StoreSupplementaryCalculations"]:
- Jb = 0.5 * (Xa - Xb).T * BI * (Xa - Xb)
- Jo = 0.5 * oma.T * RI * oma
- J = float( Jb ) + float( Jo )
+ "CostFunctionJ" in self._parameters["StoreSupplementaryCalculations"] or \
+ "MahalanobisConsistency" in self._parameters["StoreSupplementaryCalculations"]:
+ Jb = float( 0.5 * (Xa - Xb).T * BI * (Xa - Xb) )
+ Jo = float( 0.5 * oma.T * RI * oma )
+ J = Jb + Jo
self.StoredVariables["CostFunctionJb"].store( Jb )
self.StoredVariables["CostFunctionJo"].store( Jo )
self.StoredVariables["CostFunctionJ" ].store( J )
# Calcul de la covariance d'analyse
# ---------------------------------
if "APosterioriCovariance" in self._parameters["StoreSupplementaryCalculations"] or \
- "SimulationQuantiles" in self._parameters["StoreSupplementaryCalculations"]:
+ "SimulationQuantiles" in self._parameters["StoreSupplementaryCalculations"]:
+ if (Y.size <= Xb.size): K = B * Ha * (R + Hm * B * Ha).I
+ elif (Y.size > Xb.size): K = (BI + Ha * RI * Hm).I * Ha * RI
A = B - K * Hm * B
if min(A.shape) != max(A.shape):
raise ValueError("The %s a posteriori covariance matrix A is of shape %s, despites it has to be a squared matrix. There is an error in the observation operator, please check it."%(self._name,str(A.shape)))
raise ValueError("The %s a posteriori covariance matrix A is not symmetric positive-definite. Please check your a priori covariances and your observation operator."%(self._name,))
self.StoredVariables["APosterioriCovariance"].store( A )
#
- # Calculs et/ou stockages supplémentaires
+ # Calculs et/ou stockages supplémentaires
# ---------------------------------------
+ if self._parameters["StoreInternalVariables"] or "CurrentState" in self._parameters["StoreSupplementaryCalculations"]:
+ self.StoredVariables["CurrentState"].store( numpy.ravel(Xa) )
if "Innovation" in self._parameters["StoreSupplementaryCalculations"]:
self.StoredVariables["Innovation"].store( numpy.ravel(d) )
if "BMA" in self._parameters["StoreSupplementaryCalculations"]:
if "MahalanobisConsistency" in self._parameters["StoreSupplementaryCalculations"]:
self.StoredVariables["MahalanobisConsistency"].store( float( 2.*J/d.size ) )
if "SimulationQuantiles" in self._parameters["StoreSupplementaryCalculations"]:
- Qtls = self._parameters["Quantiles"]
nech = self._parameters["NumberOfSamplesForQuantiles"]
YfQ = None
for i in range(nech):
YfQ = numpy.hstack((YfQ,Yr))
YfQ.sort(axis=-1)
YQ = None
- for quantile in Qtls:
- if not (0. <= quantile <= 1.): continue
- indice = int(nech * quantile - 1./nech)
+ for quantile in self._parameters["Quantiles"]:
+ if not (0. <= float(quantile) <= 1.): continue
+ indice = int(nech * float(quantile) - 1./nech)
if YQ is None: YQ = YfQ[:,indice]
else: YQ = numpy.hstack((YQ,YfQ[:,indice]))
self.StoredVariables["SimulationQuantiles"].store( YQ )
+ if "SimulatedObservationAtBackground" in self._parameters["StoreSupplementaryCalculations"]:
+ self.StoredVariables["SimulatedObservationAtBackground"].store( numpy.ravel(HXb) )
+ if "SimulatedObservationAtCurrentState" in self._parameters["StoreSupplementaryCalculations"]:
+ self.StoredVariables["SimulatedObservationAtCurrentState"].store( numpy.ravel(HXa) )
+ if "SimulatedObservationAtOptimum" in self._parameters["StoreSupplementaryCalculations"]:
+ self.StoredVariables["SimulatedObservationAtOptimum"].store( numpy.ravel(HXa) )
#
self._post_run(HO)
return 0
# ==============================================================================
if __name__ == "__main__":
- print '\n AUTODIAGNOSTIC \n'
+ print('\n AUTODIAGNOSTIC \n')