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[modules/paravis.git] / src / Plugins / MEDReader / IO / MEDFileFieldRepresentationTree.cxx
index 6cf1d8034caae68beeeadd883a4de46d51dd91c9..dbae71be8cc5026703b4fe773bb9c65a786a6a40 100644 (file)
@@ -1,4 +1,4 @@
-// Copyright (C) 2010-2014  CEA/DEN, EDF R&D
+// Copyright (C) 2010-2016  CEA/DEN, EDF R&D
 //
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
@@ -42,6 +42,7 @@
 #include "vtkInformationQuadratureSchemeDefinitionVectorKey.h"
 #include "vtkInformationIntegerKey.h"
 #include "vtkInformation.h"
+#include "vtkDataArrayTemplate.h"
 #include "vtkIdTypeArray.h"
 #include "vtkDoubleArray.h"
 #include "vtkIntArray.h"
@@ -50,9 +51,6 @@
 #include "vtkFieldData.h"
 #include "vtkCellData.h"
 
-#include "vtksys/stl/string"
-#include "vtksys/ios/fstream"
-#include "vtksys/stl/algorithm"
 #include "vtkMutableDirectedGraph.h"
 
 using namespace ParaMEDMEM;
@@ -110,7 +108,7 @@ vtkIdTypeArray *ELGACmp::isExisting(const std::vector<std::string>& locsReallyUs
 
 vtkIdTypeArray *ELGACmp::createNew(const ParaMEDMEM::MEDFileFieldGlobsReal *globs, const std::vector<std::string>& locsReallyUsed, vtkDoubleArray *vtkd, vtkDataSet *ds) const
 {
-  static const int VTK_DATA_ARRAY_DELETE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_DELETE;
+  const int VTK_DATA_ARRAY_DELETE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_DELETE;
   std::vector< std::vector<std::string> > locNames(_loc_names);
   std::vector<vtkIdTypeArray *> elgas(_elgas);
   std::vector< std::pair< vtkQuadratureSchemeDefinition *, unsigned char > > defs;
@@ -167,7 +165,7 @@ vtkIdTypeArray *ELGACmp::createNew(const ParaMEDMEM::MEDFileFieldGlobsReal *glob
       offset+=delta;
     }
   elga->GetInformation()->Set(MEDUtilities::ELGA(),1);
-  elga->SetArray(pt,ncell,0,VTK_DATA_ARRAY_DELETE);
+  elga->SetVoidArray(pt,ncell,0,VTK_DATA_ARRAY_DELETE);
   std::ostringstream oss; oss << "ELGA" << "@" << _loc_names.size();
   std::string ossStr(oss.str());
   elga->SetName(ossStr.c_str());
@@ -178,6 +176,7 @@ vtkIdTypeArray *ELGACmp::createNew(const ParaMEDMEM::MEDFileFieldGlobsReal *glob
   _loc_names=locNames;
   _elgas=elgas;
   _defs.push_back(defs);
+  return elga;
 }
 
 void ELGACmp::appendELGAIfAny(vtkDataSet *ds) const
@@ -275,8 +274,8 @@ bool MEDFileFieldRepresentationLeavesArrays::setStatus(bool status) const
 
 void MEDFileFieldRepresentationLeavesArrays::appendFields(const MEDTimeReq *tr, const ParaMEDMEM::MEDFileFieldGlobsReal *globs, const ParaMEDMEM::MEDMeshMultiLev *mml, const ParaMEDMEM::MEDFileMeshStruct *mst, vtkDataSet *ds) const
 {
-  static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
-  static const int VTK_DATA_ARRAY_DELETE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_DELETE;
+  const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+  const int VTK_DATA_ARRAY_DELETE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_DELETE;
   tr->setNumberOfTS((operator->())->getNumberOfTS());
   tr->initIterator();
   for(int timeStepId=0;timeStepId<tr->size();timeStepId++,++(*tr))
@@ -366,7 +365,7 @@ void MEDFileFieldRepresentationLeavesArrays::appendFields(const MEDTimeReq *tr,
                   offset+=delta;
                 }
               elno->GetInformation()->Set(MEDUtilities::ELNO(),1);
-              elno->SetArray(pt,ncell,0,VTK_DATA_ARRAY_DELETE);
+              elno->SetVoidArray(pt,ncell,0,VTK_DATA_ARRAY_DELETE);
               std::string nameElno("ELNO"); nameElno+="@"; nameElno+=name;
               elno->SetName(nameElno.c_str());
               ds->GetCellData()->AddArray(elno);
@@ -535,6 +534,12 @@ bool MEDFileFieldRepresentationLeaves::containZeName(const char *name, int& id)
   return false;
 }
 
+void MEDFileFieldRepresentationLeaves::dumpState(std::map<std::string,bool>& status) const
+{
+  for(std::vector<MEDFileFieldRepresentationLeavesArrays>::const_iterator it=_arrays.begin();it!=_arrays.end();it++)
+    status[(*it).getZeName()]=(*it).getStatus();
+}
+
 bool MEDFileFieldRepresentationLeaves::isActivated() const
 {
   for(std::vector<MEDFileFieldRepresentationLeavesArrays>::const_iterator it=_arrays.begin();it!=_arrays.end();it++)
@@ -628,7 +633,7 @@ void MEDFileFieldRepresentationLeaves::appendFields(const MEDTimeReq *tr, const
 
 vtkUnstructuredGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInterpolationUnstructured(MEDUMeshMultiLev *mm) const
 {
-  static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+  const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
   DataArrayDouble *coordsMC(0);
   DataArrayByte *typesMC(0);
   DataArrayInt *cellLocationsMC(0),*cellsMC(0),*faceLocationsMC(0),*facesMC(0);
@@ -642,18 +647,18 @@ vtkUnstructuredGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInt
   vtkUnsignedCharArray *cellTypes(vtkUnsignedCharArray::New());
   cellTypes->SetArray(reinterpret_cast<unsigned char *>(typesSafe->getPointer()),nbOfCells,0,VTK_DATA_ARRAY_FREE); typesSafe->accessToMemArray().setSpecificDeallocator(0);
   vtkIdTypeArray *cellLocations(vtkIdTypeArray::New());
-  cellLocations->SetArray(cellLocationsSafe->getPointer(),nbOfCells,0,VTK_DATA_ARRAY_FREE); cellLocationsSafe->accessToMemArray().setSpecificDeallocator(0);
+  cellLocations->SetVoidArray(cellLocationsSafe->getPointer(),nbOfCells,0,VTK_DATA_ARRAY_FREE); cellLocationsSafe->accessToMemArray().setSpecificDeallocator(0);
   vtkCellArray *cells(vtkCellArray::New());
   vtkIdTypeArray *cells2(vtkIdTypeArray::New());
-  cells2->SetArray(cellsSafe->getPointer(),cellsSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); cellsSafe->accessToMemArray().setSpecificDeallocator(0);
+  cells2->SetVoidArray(cellsSafe->getPointer(),cellsSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); cellsSafe->accessToMemArray().setSpecificDeallocator(0);
   cells->SetCells(nbOfCells,cells2);
   cells2->Delete();
   if(faceLocationsMC!=0 && facesMC!=0)
     {
       vtkIdTypeArray *faces(vtkIdTypeArray::New());
-      faces->SetArray(facesSafe->getPointer(),facesSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); facesSafe->accessToMemArray().setSpecificDeallocator(0);
+      faces->SetVoidArray(facesSafe->getPointer(),facesSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); facesSafe->accessToMemArray().setSpecificDeallocator(0);
       vtkIdTypeArray *faceLocations(vtkIdTypeArray::New());
-      faceLocations->SetArray(faceLocationsSafe->getPointer(),faceLocationsSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); faceLocationsSafe->accessToMemArray().setSpecificDeallocator(0);
+      faceLocations->SetVoidArray(faceLocationsSafe->getPointer(),faceLocationsSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); faceLocationsSafe->accessToMemArray().setSpecificDeallocator(0);
       ret->SetCells(cellTypes,cellLocations,cells,faceLocations,faces);
       faceLocations->Delete();
       faces->Delete();
@@ -683,7 +688,7 @@ vtkUnstructuredGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInt
 
 vtkRectilinearGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInterpolationCartesian(ParaMEDMEM::MEDCMeshMultiLev *mm) const
 {
-  static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+  const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
   bool isInternal;
   std::vector< DataArrayDouble * > arrs(mm->buildVTUArrays(isInternal));
   vtkDoubleArray *vtkTmp(0);
@@ -736,7 +741,7 @@ vtkRectilinearGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInte
 
 vtkStructuredGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInterpolationCurveLinear(ParaMEDMEM::MEDCurveLinearMeshMultiLev *mm) const
 {
-  static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+  const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
   int meshStr[3]={1,1,1};
   DataArrayDouble *coords(0);
   std::vector<int> nodeStrct;
@@ -778,7 +783,7 @@ vtkStructuredGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInter
  
 vtkDataSet *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInterpolation(const MEDTimeReq *tr, const MEDFileFieldGlobsReal *globs, const ParaMEDMEM::MEDFileMeshes *meshes) const
 {
-  static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+  const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
   vtkDataSet *ret(0);
   //_fsp->isDataSetSupportEqualToThePreviousOne(i,globs);
   MEDCouplingAutoRefCountObjectPtr<MEDMeshMultiLev> mml(_fsp->buildFromScratchDataSetSupport(0,globs));//0=timestep Id. Make the hypothesis that support does not change 
@@ -1144,6 +1149,7 @@ void MEDFileFieldRepresentationTree::loadMainStructureOfFile(const char *fileNam
     {
       AppendFieldFromMeshes(_ms,_fields);
     }
+  _ms->cartesianizeMe();
   _fields->removeFieldsWithoutAnyTimeStep();
   std::vector<std::string> meshNames(_ms->getMeshesNames());
   std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileFields> > fields_per_mesh(meshNames.size());
@@ -1201,12 +1207,12 @@ void MEDFileFieldRepresentationTree::loadMainStructureOfFile(const char *fileNam
   this->_data_structure.resize(allFMTSLeavesPerTimeSeriesSafe.size());
   for(std::size_t i=0;i<allFMTSLeavesPerTimeSeriesSafe.size();i++)
     {
-      vtksys_stl::vector< vtksys_stl::string > meshNamesLoc;
+      std::vector< std::string > meshNamesLoc;
       std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileAnyTypeFieldMultiTS> > > splitByMeshName;
       for(std::size_t j=0;j<allFMTSLeavesPerTimeSeriesSafe[i].size();j++)
         {
           std::string meshName(allFMTSLeavesPerTimeSeriesSafe[i][j]->getMeshName());
-          vtksys_stl::vector< vtksys_stl::string >::iterator it(std::find(meshNamesLoc.begin(),meshNamesLoc.end(),meshName));
+          std::vector< std::string >::iterator it(std::find(meshNamesLoc.begin(),meshNamesLoc.end(),meshName));
           if(it==meshNamesLoc.end())
             {
               meshNamesLoc.push_back(meshName);
@@ -1393,6 +1399,16 @@ void MEDFileFieldRepresentationTree::printMySelf(std::ostream& os) const
     os << "$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$" << std::endl;
 }
 
+std::map<std::string,bool> MEDFileFieldRepresentationTree::dumpState() const
+{
+  std::map<std::string,bool> ret;
+  for(std::vector< std::vector< std::vector< MEDFileFieldRepresentationLeaves > > >::const_iterator it0=_data_structure.begin();it0!=_data_structure.end();it0++)
+    for(std::vector< std::vector< MEDFileFieldRepresentationLeaves > >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+      for(std::vector< MEDFileFieldRepresentationLeaves >::const_iterator it2=(*it1).begin();it2!=(*it1).end();it2++)
+        (*it2).dumpState(ret);
+  return ret;
+}
+
 void MEDFileFieldRepresentationTree::AppendFieldFromMeshes(const ParaMEDMEM::MEDFileMeshes *ms, ParaMEDMEM::MEDFileFields *ret)
 {
   if(!ret)
@@ -1404,53 +1420,53 @@ void MEDFileFieldRepresentationTree::AppendFieldFromMeshes(const ParaMEDMEM::MED
       ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDFileField1TS> f1tsMultiLev(ParaMEDMEM::MEDFileField1TS::New());
       MEDFileUMesh *mmu(dynamic_cast<MEDFileUMesh *>(mm));
       if(mmu)
-       {
-         for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
-           {
-             std::vector<INTERP_KERNEL::NormalizedCellType> gts(mmu->getGeoTypesAtLevel(*it));
-             for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator gt=gts.begin();gt!=gts.end();gt++)
-               {
-                 ParaMEDMEM::MEDCouplingMesh *m(mmu->getDirectUndergroundSingleGeoTypeMesh(*gt));
-                 ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
-                 f->setMesh(m);
-                 ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
-                 arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
-                 arr->iota();
-                 f->setArray(arr);
-                 f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
-                 f1tsMultiLev->setFieldNoProfileSBT(f);
-               }
-           }
-         if(levs.empty())
-           {
-             std::vector<int> levsExt(mm->getNonEmptyLevelsExt());
-             if(levsExt.size()==levs.size()+1)
-               {
-                 ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getGenMeshAtLevel(1));
-                 ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_NODES));
-                 f->setMesh(m);
-                 ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(m->getNumberOfNodes());
-                 arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
-                 arr->iota(); f->setArray(arr);
-                 f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
-                 f1tsMultiLev->setFieldNoProfileSBT(f);
-               }
-             else
-               continue;
-           }
-       }
+        {
+          for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
+            {
+              std::vector<INTERP_KERNEL::NormalizedCellType> gts(mmu->getGeoTypesAtLevel(*it));
+              for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator gt=gts.begin();gt!=gts.end();gt++)
+                {
+                  ParaMEDMEM::MEDCouplingMesh *m(mmu->getDirectUndergroundSingleGeoTypeMesh(*gt));
+                  ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
+                  f->setMesh(m);
+                  ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
+                  arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+                  arr->iota();
+                  f->setArray(arr);
+                  f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+                  f1tsMultiLev->setFieldNoProfileSBT(f);
+                }
+            }
+          if(levs.empty())
+            {
+              std::vector<int> levsExt(mm->getNonEmptyLevelsExt());
+              if(levsExt.size()==levs.size()+1)
+                {
+                  ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getMeshAtLevel(1));
+                  ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_NODES));
+                  f->setMesh(m);
+                  ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(m->getNumberOfNodes());
+                  arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+                  arr->iota(); f->setArray(arr);
+                  f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+                  f1tsMultiLev->setFieldNoProfileSBT(f);
+                }
+              else
+                continue;
+            }
+        }
       else
-       {
-         ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getGenMeshAtLevel(0));
-         ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
-         f->setMesh(m);
-         ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
-         arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
-         arr->iota();
-         f->setArray(arr);
-         f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
-         f1tsMultiLev->setFieldNoProfileSBT(f);
-       }
+        {
+          ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getMeshAtLevel(0));
+          ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
+          f->setMesh(m);
+          ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
+          arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+          arr->iota();
+          f->setArray(arr);
+          f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+          f1tsMultiLev->setFieldNoProfileSBT(f);
+        }
       //
       ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDFileFieldMultiTS> fmtsMultiLev(ParaMEDMEM::MEDFileFieldMultiTS::New());
       fmtsMultiLev->pushBackTimeStep(f1tsMultiLev);
@@ -1460,7 +1476,7 @@ void MEDFileFieldRepresentationTree::AppendFieldFromMeshes(const ParaMEDMEM::MED
 
 std::string MEDFileFieldRepresentationTree::BuildAUniqueArrayNameForMesh(const std::string& meshName, const ParaMEDMEM::MEDFileFields *ret)
 {
-  static const char KEY_STR_TO_AVOID_COLLIDE[]="MESH@";
+  const char KEY_STR_TO_AVOID_COLLIDE[]="MESH@";
   if(!ret)
     throw INTERP_KERNEL::Exception("MEDFileFieldRepresentationTree::BuildAUniqueArrayNameForMesh : internal error ! NULL ret !");
   std::vector<std::string> fieldNamesAlreadyExisting(ret->getFieldsNames());
@@ -1520,7 +1536,7 @@ std::vector<std::string> MEDFileFieldRepresentationTree::SplitFieldNameIntoParts
 */
 std::string MEDFileFieldRepresentationTree::PostProcessFieldName(const std::string& fullFieldName)
 {
-  static const char SEP('_');
+  const char SEP('_');
   std::vector<std::string> v(SplitFieldNameIntoParts(fullFieldName,SEP));
   if(v.empty())
     return fullFieldName;//should never happen