// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
-// version 2.1 of the License.
+// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
#include "MEDFileData.hxx"
#include "SauvReader.hxx"
+#ifdef MEDREADER_USE_MPI
+ #include "ParaMEDFileMesh.hxx"
+#endif
+
#include "vtkXMLUnstructuredGridWriter.h"//
#include "vtkUnstructuredGrid.h"
for(int i=0;i<nbGaussPt;i++)
{
const double *pt0(calculator.getFunctionValues(i));
- std::copy(pt0,pt0+nbPtsPerCell,shape+nbPtsPerCell*i);
+ if(ct!=INTERP_KERNEL::NORM_HEXA27)
+ std::copy(pt0,pt0+nbPtsPerCell,shape+nbPtsPerCell*i);
+ else
+ {
+ for(int j=0;j<27;j++)
+ shape[nbPtsPerCell*i+j]=pt0[MEDMeshMultiLev::HEXA27_PERM_ARRAY[j]];
+ }
}
unsigned char vtkType(MEDMeshMultiLev::PARAMEDMEM_2_VTKTYPE[ct]);
m[vtkType]=nbGaussPt;
return _ze_full_name;
}
-void MEDFileFieldRepresentationLeavesArrays::feedSIL(vtkMutableDirectedGraph* sil, vtkIdType root, vtkVariantArray *edge, const std::string& tsName, const std::string& meshName, const std::string& comSupStr, std::vector<std::string>& names) const
+const char *MEDFileFieldRepresentationLeavesArrays::getZeNameC() const
+{
+ return _ze_full_name.c_str();
+}
+
+void MEDFileFieldRepresentationLeavesArrays::feedSIL(vtkMutableDirectedGraph* sil, vtkIdType root, vtkVariantArray *edge, std::vector<std::string>& names) const
{
vtkIdType refId(sil->AddChild(root,edge));
names.push_back(_ze_name);
- std::ostringstream oss3; oss3 << tsName << "/" << meshName << "/" << comSupStr << "/" << _ze_name;
- _ze_full_name=oss3.str();
//
if(MEDFileFieldRepresentationTree::IsFieldMeshRegardingInfo(((operator->())->getInfo())))
{
}
}
+void MEDFileFieldRepresentationLeavesArrays::computeFullNameInLeaves(const std::string& tsName, const std::string& meshName, const std::string& comSupStr) const
+{
+ std::ostringstream oss3; oss3 << tsName << "/" << meshName << "/" << comSupStr << "/" << _ze_name;
+ _ze_full_name=oss3.str();
+}
+
bool MEDFileFieldRepresentationLeavesArrays::getStatus() const
{
return _activated;
return _arrays[0]->getNumberOfTS();
}
-void MEDFileFieldRepresentationLeaves::feedSIL(vtkMutableDirectedGraph* sil, vtkIdType root, vtkVariantArray *edge, const std::string& tsName, const std::string& meshName, const std::string& comSupStr, std::vector<std::string>& names) const
+void MEDFileFieldRepresentationLeaves::computeFullNameInLeaves(const std::string& tsName, const std::string& meshName, const std::string& comSupStr) const
+{
+ for(std::vector<MEDFileFieldRepresentationLeavesArrays>::const_iterator it=_arrays.begin();it!=_arrays.end();it++)
+ (*it).computeFullNameInLeaves(tsName,meshName,comSupStr);
+}
+
+/*!
+ * \param [in] ms is the meshes pointer. It can be used only for information of geometric types. No special processing will be requested on ms.
+ */
+void MEDFileFieldRepresentationLeaves::feedSIL(const ParaMEDMEM::MEDFileMeshes *ms, const std::string& meshName, vtkMutableDirectedGraph* sil, vtkIdType root, vtkVariantArray *edge, std::vector<std::string>& names) const
{
+ vtkIdType root2(sil->AddChild(root,edge));
+ names.push_back(std::string("Arrs"));
for(std::vector<MEDFileFieldRepresentationLeavesArrays>::const_iterator it=_arrays.begin();it!=_arrays.end();it++)
- (*it).feedSIL(sil,root,edge,tsName,meshName,comSupStr,names);
+ (*it).feedSIL(sil,root2,edge,names);
+ //
+ vtkIdType root3(sil->AddChild(root,edge));
+ names.push_back(std::string("InfoOnGeoType"));
+ const ParaMEDMEM::MEDFileMesh *m(0);
+ if(ms)
+ m=ms->getMeshWithName(meshName);
+ const ParaMEDMEM::MEDFileFastCellSupportComparator *fsp(_fsp);
+ if(!fsp || fsp->getNumberOfTS()==0)
+ return ;
+ std::vector< INTERP_KERNEL::NormalizedCellType > gts(fsp->getGeoTypesAt(0,m));
+ for(std::vector< INTERP_KERNEL::NormalizedCellType >::const_iterator it2=gts.begin();it2!=gts.end();it2++)
+ {
+ const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(*it2));
+ std::string cmStr(cm.getRepr()); cmStr=cmStr.substr(5);//skip "NORM_"
+ sil->AddChild(root3,edge);
+ names.push_back(cmStr);
+ }
}
bool MEDFileFieldRepresentationLeaves::containId(int id) const
for(std::vector< MEDFileFieldRepresentationLeaves >::const_iterator it2=(*it1).begin();it2!=(*it1).end();it2++)
(*it2).setId(zeId);
}
+
+void MEDFileFieldRepresentationTree::computeFullNameInLeaves() const
+{
+ std::size_t it0Cnt(0);
+ for(std::vector< std::vector< std::vector< MEDFileFieldRepresentationLeaves > > >::const_iterator it0=_data_structure.begin();it0!=_data_structure.end();it0++,it0Cnt++)
+ {
+ std::ostringstream oss; oss << MEDFileFieldRepresentationLeavesArrays::TS_STR << it0Cnt;
+ std::string tsName(oss.str());
+ for(std::vector< std::vector< MEDFileFieldRepresentationLeaves > >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ {
+ std::string meshName((*it1)[0].getMeshName());
+ std::size_t it2Cnt(0);
+ for(std::vector< MEDFileFieldRepresentationLeaves >::const_iterator it2=(*it1).begin();it2!=(*it1).end();it2++,it2Cnt++)
+ {
+ std::ostringstream oss2; oss2 << MEDFileFieldRepresentationLeavesArrays::COM_SUP_STR << it2Cnt;
+ std::string comSupStr(oss2.str());
+ (*it2).computeFullNameInLeaves(tsName,meshName,comSupStr);
+ }
+ }
+ }
+}
+
void MEDFileFieldRepresentationTree::activateTheFirst() const
{
for(std::vector< std::vector< std::vector< MEDFileFieldRepresentationLeaves > > >::const_iterator it0=_data_structure.begin();it0!=_data_structure.end();it0++)
std::string comSupStr(oss2.str());
vtkIdType typeId2(sil->AddChild(typeId1,edge));
names.push_back(comSupStr);
- (*it2).feedSIL(sil,typeId2,edge,tsName,meshName,comSupStr,names);
+ (*it2).feedSIL(_ms,meshName,sil,typeId2,edge,names);
}
}
}
return elt.getZeName();
}
+const char *MEDFileFieldRepresentationTree::getNameOfC(int id) const
+{
+ const MEDFileFieldRepresentationLeavesArrays& elt(getLeafArr(id));
+ return elt.getZeNameC();
+}
+
bool MEDFileFieldRepresentationTree::getStatusOf(int id) const
{
const MEDFileFieldRepresentationLeavesArrays& elt(getLeafArr(id));
for(std::vector< MEDFileFieldRepresentationLeaves >::const_iterator it2=(*it1).begin();it2!=(*it1).end();it2++)
if((*it2).containZeName(name,ret))
return ret;
- throw INTERP_KERNEL::Exception("MEDFileFieldRepresentationTree::getIdHavingZeName : No such a name !");
+ std::ostringstream msg; msg << "MEDFileFieldRepresentationTree::getIdHavingZeName : No such a name \"" << name << "\" !";
+ throw INTERP_KERNEL::Exception(msg.str().c_str());
}
bool MEDFileFieldRepresentationTree::changeStatusOfAndUpdateToHaveCoherentVTKDataSet(int id, bool status) const
/*!
*
*/
-void MEDFileFieldRepresentationTree::loadMainStructureOfFile(const char *fileName, bool isMEDOrSauv)
+void MEDFileFieldRepresentationTree::loadMainStructureOfFile(const char *fileName, bool isMEDOrSauv, int iPart, int nbOfParts)
{
if(isMEDOrSauv)
{
- _ms=MEDFileMeshes::New(fileName);
- _fields=MEDFileFields::New(fileName,false);//false is important to not read the values
+ if((iPart==-1 && nbOfParts==-1) || (iPart==0 && nbOfParts==1))
+ {
+ _ms=MEDFileMeshes::New(fileName);
+ _fields=MEDFileFields::New(fileName,false);//false is important to not read the values
+ }
+ else
+ {
+#ifdef MEDREADER_USE_MPI
+ _ms=ParaMEDFileMeshes::New(iPart,nbOfParts,fileName);
+ int nbMeshes(_ms->getNumberOfMeshes());
+ for(int i=0;i<nbMeshes;i++)
+ {
+ ParaMEDMEM::MEDFileMesh *tmp(_ms->getMeshAtPos(i));
+ ParaMEDMEM::MEDFileUMesh *tmp2(dynamic_cast<ParaMEDMEM::MEDFileUMesh *>(tmp));
+ if(tmp2)
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp3(tmp2->zipCoords());
+ }
+ _fields=MEDFileFields::LoadPartOf(fileName,false,_ms);//false is important to not read the values
+#else
+ std::ostringstream oss; oss << "MEDFileFieldRepresentationTree::loadMainStructureOfFile : request for iPart/nbOfParts=" << iPart << "/" << nbOfParts << " whereas Plugin not compiled with MPI !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+#endif
+ }
}
else
{
{
AppendFieldFromMeshes(_ms,_fields);
}
+ _fields->removeFieldsWithoutAnyTimeStep();
std::vector<std::string> meshNames(_ms->getMeshesNames());
std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileFields> > fields_per_mesh(meshNames.size());
for(std::size_t i=0;i<meshNames.size();i++)
{
MEDCouplingAutoRefCountObjectPtr<MEDFileAnyTypeFieldMultiTS> fmts((*fields)->getFieldAtPos((int)j));
std::vector< MEDCouplingAutoRefCountObjectPtr< MEDFileAnyTypeFieldMultiTS > > tmp(fmts->splitDiscretizations());
- allFMTSLeavesToDisplaySafe.insert(allFMTSLeavesToDisplaySafe.end(),tmp.begin(),tmp.end());
+ // EDF 8655
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr< MEDFileAnyTypeFieldMultiTS > >::const_iterator it=tmp.begin();it!=tmp.end();it++)
+ {
+ if(!(*it)->presenceOfMultiDiscPerGeoType())
+ allFMTSLeavesToDisplaySafe.push_back(*it);
+ else
+ {// The case of some parts of field have more than one discretization per geo type.
+ std::vector< MEDCouplingAutoRefCountObjectPtr< MEDFileAnyTypeFieldMultiTS > > subTmp((*it)->splitMultiDiscrPerGeoTypes());
+ std::size_t it0Cnt(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr< MEDFileAnyTypeFieldMultiTS > >::iterator it0=subTmp.begin();it0!=subTmp.end();it0++,it0Cnt++)//not const because setName
+ {
+ std::ostringstream oss; oss << (*it0)->getName() << "_" << std::setfill('M') << std::setw(3) << it0Cnt;
+ (*it0)->setName(oss.str());
+ allFMTSLeavesToDisplaySafe.push_back(*it0);
+ }
+ }
+ }
+ // end EDF 8655
}
}
std::vector< MEDFileAnyTypeFieldMultiTS *> allFMTSLeavesToDisplay(allFMTSLeavesToDisplaySafe.size());
}
this->removeEmptyLeaves();
this->assignIds();
+ this->computeFullNameInLeaves();
}
void MEDFileFieldRepresentationTree::removeEmptyLeaves()
if(!isStdOrMode)
tr=new MEDStdTimeReq((int)zeTimeId);
else
- tr=new MEDModeTimeReq(tk.getTheVectOfBool());
+ tr=new MEDModeTimeReq(tk.getTheVectOfBool(),tk.getPostProcessedTime());
vtkDataSet *ret(leaf.buildVTKInstanceNoTimeInterpolation(tr,_fields,_ms));
delete tr;
return ret;
void MEDFileFieldRepresentationTree::AppendFieldFromMeshes(const ParaMEDMEM::MEDFileMeshes *ms, ParaMEDMEM::MEDFileFields *ret)
{
+ if(!ret)
+ throw INTERP_KERNEL::Exception("MEDFileFieldRepresentationTree::AppendFieldFromMeshes : internal error ! NULL ret !");
for(int i=0;i<ms->getNumberOfMeshes();i++)
{
MEDFileMesh *mm(ms->getMeshAtPos(i));
- MEDFileUMesh *mmu(dynamic_cast<MEDFileUMesh *>(mm));
- if(!mmu)
- continue;
std::vector<int> levs(mm->getNonEmptyLevels());
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDFileField1TS> f1tsMultiLev(ParaMEDMEM::MEDFileField1TS::New());
- for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
- {
- std::vector<INTERP_KERNEL::NormalizedCellType> gts(mmu->getGeoTypesAtLevel(*it));
- for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator gt=gts.begin();gt!=gts.end();gt++)
- {
- ParaMEDMEM::MEDCouplingMesh *m(mmu->getDirectUndergroundSingleGeoTypeMesh(*gt));
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
- f->setMesh(m);
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
- arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
- arr->iota();
- f->setArray(arr);
- f->setName(mm->getName());
- f1tsMultiLev->setFieldNoProfileSBT(f);
- }
- }
- if(levs.empty())
- {
- std::vector<int> levsExt(mm->getNonEmptyLevelsExt());
- if(levsExt.size()==levs.size()+1)
- {
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getGenMeshAtLevel(1));
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_NODES));
- f->setMesh(m);
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(m->getNumberOfNodes());
- arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
- arr->iota(); f->setArray(arr);
- f->setName(mm->getName());
- f1tsMultiLev->setFieldNoProfileSBT(f);
- }
- else
- continue;
- }
+ MEDFileUMesh *mmu(dynamic_cast<MEDFileUMesh *>(mm));
+ if(mmu)
+ {
+ for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
+ {
+ std::vector<INTERP_KERNEL::NormalizedCellType> gts(mmu->getGeoTypesAtLevel(*it));
+ for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator gt=gts.begin();gt!=gts.end();gt++)
+ {
+ ParaMEDMEM::MEDCouplingMesh *m(mmu->getDirectUndergroundSingleGeoTypeMesh(*gt));
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
+ f->setMesh(m);
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
+ arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+ arr->iota();
+ f->setArray(arr);
+ f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+ f1tsMultiLev->setFieldNoProfileSBT(f);
+ }
+ }
+ if(levs.empty())
+ {
+ std::vector<int> levsExt(mm->getNonEmptyLevelsExt());
+ if(levsExt.size()==levs.size()+1)
+ {
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getGenMeshAtLevel(1));
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_NODES));
+ f->setMesh(m);
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(m->getNumberOfNodes());
+ arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+ arr->iota(); f->setArray(arr);
+ f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+ f1tsMultiLev->setFieldNoProfileSBT(f);
+ }
+ else
+ continue;
+ }
+ }
+ else
+ {
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getGenMeshAtLevel(0));
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
+ f->setMesh(m);
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
+ arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+ arr->iota();
+ f->setArray(arr);
+ f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+ f1tsMultiLev->setFieldNoProfileSBT(f);
+ }
//
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDFileFieldMultiTS> fmtsMultiLev(ParaMEDMEM::MEDFileFieldMultiTS::New());
fmtsMultiLev->pushBackTimeStep(f1tsMultiLev);
}
}
+std::string MEDFileFieldRepresentationTree::BuildAUniqueArrayNameForMesh(const std::string& meshName, const ParaMEDMEM::MEDFileFields *ret)
+{
+ static const char KEY_STR_TO_AVOID_COLLIDE[]="MESH@";
+ if(!ret)
+ throw INTERP_KERNEL::Exception("MEDFileFieldRepresentationTree::BuildAUniqueArrayNameForMesh : internal error ! NULL ret !");
+ std::vector<std::string> fieldNamesAlreadyExisting(ret->getFieldsNames());
+ if(std::find(fieldNamesAlreadyExisting.begin(),fieldNamesAlreadyExisting.end(),meshName)==fieldNamesAlreadyExisting.end())
+ return meshName;
+ std::string tmpName(KEY_STR_TO_AVOID_COLLIDE); tmpName+=meshName;
+ while(std::find(fieldNamesAlreadyExisting.begin(),fieldNamesAlreadyExisting.end(),tmpName)!=fieldNamesAlreadyExisting.end())
+ tmpName=std::string(KEY_STR_TO_AVOID_COLLIDE)+tmpName;
+ return tmpName;
+}
+
ParaMEDMEM::MEDFileFields *MEDFileFieldRepresentationTree::BuildFieldFromMeshes(const ParaMEDMEM::MEDFileMeshes *ms)
{
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDFileFields> ret(ParaMEDMEM::MEDFileFields::New());
return ret.retn();
}
+std::vector<std::string> MEDFileFieldRepresentationTree::SplitFieldNameIntoParts(const std::string& fullFieldName, char sep)
+{
+ std::vector<std::string> ret;
+ std::size_t pos(0);
+ while(pos!=std::string::npos)
+ {
+ std::size_t curPos(fullFieldName.find_first_of(sep,pos));
+ std::string elt(fullFieldName.substr(pos,curPos!=std::string::npos?curPos-pos:std::string::npos));
+ ret.push_back(elt);
+ pos=fullFieldName.find_first_not_of(sep,curPos);
+ }
+ return ret;
+}
+
+/*!
+ * Here the non regression tests.
+ * const char inp0[]="";
+ * const char exp0[]="";
+ * const char inp1[]="field";
+ * const char exp1[]="field";
+ * const char inp2[]="_________";
+ * const char exp2[]="_________";
+ * const char inp3[]="field_p";
+ * const char exp3[]="field_p";
+ * const char inp4[]="field__p";
+ * const char exp4[]="field_p";
+ * const char inp5[]="field_p__";
+ * const char exp5[]="field_p";
+ * const char inp6[]="field_p_";
+ * const char exp6[]="field_p";
+ * const char inp7[]="field_____EDFGEG//sdkjf_____PP_______________";
+ * const char exp7[]="field_EDFGEG//sdkjf_PP";
+ * const char inp8[]="field_____EDFGEG//sdkjf_____PP";
+ * const char exp8[]="field_EDFGEG//sdkjf_PP";
+ * const char inp9[]="_field_____EDFGEG//sdkjf_____PP_______________";
+ * const char exp9[]="field_EDFGEG//sdkjf_PP";
+ * const char inp10[]="___field_____EDFGEG//sdkjf_____PP_______________";
+ * const char exp10[]="field_EDFGEG//sdkjf_PP";
+*/
+std::string MEDFileFieldRepresentationTree::PostProcessFieldName(const std::string& fullFieldName)
+{
+ static const char SEP('_');
+ std::vector<std::string> v(SplitFieldNameIntoParts(fullFieldName,SEP));
+ if(v.empty())
+ return fullFieldName;//should never happen
+ if(v.size()==1)
+ {
+ if(v[0].empty())
+ return fullFieldName;
+ else
+ return v[0];
+ }
+ std::string ret(v[0]);
+ for(std::size_t i=1;i<v.size();i++)
+ {
+ if(!v[i].empty())
+ {
+ if(!ret.empty())
+ { ret+=SEP; ret+=v[i]; }
+ else
+ ret=v[i];
+ }
+ }
+ if(ret.empty())
+ return fullFieldName;
+ return ret;
+}
+
///////////
TimeKeeper::TimeKeeper(int policy):_policy(policy)
