-// Copyright (C) 2010-2014 CEA/DEN, EDF R&D
+// Copyright (C) 2010-2015 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "vtkFieldData.h"
#include "vtkCellData.h"
-#include "vtksys/stl/string"
-#include "vtksys/ios/fstream"
-#include "vtksys/stl/algorithm"
#include "vtkMutableDirectedGraph.h"
using namespace ParaMEDMEM;
vtkIdTypeArray *ELGACmp::createNew(const ParaMEDMEM::MEDFileFieldGlobsReal *globs, const std::vector<std::string>& locsReallyUsed, vtkDoubleArray *vtkd, vtkDataSet *ds) const
{
- static const int VTK_DATA_ARRAY_DELETE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_DELETE;
+ const int VTK_DATA_ARRAY_DELETE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_DELETE;
std::vector< std::vector<std::string> > locNames(_loc_names);
std::vector<vtkIdTypeArray *> elgas(_elgas);
std::vector< std::pair< vtkQuadratureSchemeDefinition *, unsigned char > > defs;
offset+=delta;
}
elga->GetInformation()->Set(MEDUtilities::ELGA(),1);
- elga->SetArray(pt,ncell,0,VTK_DATA_ARRAY_DELETE);
+ elga->SetVoidArray(pt,ncell,0,VTK_DATA_ARRAY_DELETE);
std::ostringstream oss; oss << "ELGA" << "@" << _loc_names.size();
std::string ossStr(oss.str());
elga->SetName(ossStr.c_str());
void MEDFileFieldRepresentationLeavesArrays::appendFields(const MEDTimeReq *tr, const ParaMEDMEM::MEDFileFieldGlobsReal *globs, const ParaMEDMEM::MEDMeshMultiLev *mml, const ParaMEDMEM::MEDFileMeshStruct *mst, vtkDataSet *ds) const
{
- static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
- static const int VTK_DATA_ARRAY_DELETE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_DELETE;
+ const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+ const int VTK_DATA_ARRAY_DELETE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_DELETE;
tr->setNumberOfTS((operator->())->getNumberOfTS());
tr->initIterator();
for(int timeStepId=0;timeStepId<tr->size();timeStepId++,++(*tr))
offset+=delta;
}
elno->GetInformation()->Set(MEDUtilities::ELNO(),1);
- elno->SetArray(pt,ncell,0,VTK_DATA_ARRAY_DELETE);
+ elno->SetVoidArray(pt,ncell,0,VTK_DATA_ARRAY_DELETE);
std::string nameElno("ELNO"); nameElno+="@"; nameElno+=name;
elno->SetName(nameElno.c_str());
ds->GetCellData()->AddArray(elno);
return false;
}
+void MEDFileFieldRepresentationLeaves::dumpState(std::map<std::string,bool>& status) const
+{
+ for(std::vector<MEDFileFieldRepresentationLeavesArrays>::const_iterator it=_arrays.begin();it!=_arrays.end();it++)
+ status[(*it).getZeName()]=(*it).getStatus();
+}
+
bool MEDFileFieldRepresentationLeaves::isActivated() const
{
for(std::vector<MEDFileFieldRepresentationLeavesArrays>::const_iterator it=_arrays.begin();it!=_arrays.end();it++)
vtkUnstructuredGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInterpolationUnstructured(MEDUMeshMultiLev *mm) const
{
- static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+ const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
DataArrayDouble *coordsMC(0);
DataArrayByte *typesMC(0);
DataArrayInt *cellLocationsMC(0),*cellsMC(0),*faceLocationsMC(0),*facesMC(0);
vtkUnsignedCharArray *cellTypes(vtkUnsignedCharArray::New());
cellTypes->SetArray(reinterpret_cast<unsigned char *>(typesSafe->getPointer()),nbOfCells,0,VTK_DATA_ARRAY_FREE); typesSafe->accessToMemArray().setSpecificDeallocator(0);
vtkIdTypeArray *cellLocations(vtkIdTypeArray::New());
- cellLocations->SetArray(cellLocationsSafe->getPointer(),nbOfCells,0,VTK_DATA_ARRAY_FREE); cellLocationsSafe->accessToMemArray().setSpecificDeallocator(0);
+ cellLocations->SetVoidArray(cellLocationsSafe->getPointer(),nbOfCells,0,VTK_DATA_ARRAY_FREE); cellLocationsSafe->accessToMemArray().setSpecificDeallocator(0);
vtkCellArray *cells(vtkCellArray::New());
vtkIdTypeArray *cells2(vtkIdTypeArray::New());
- cells2->SetArray(cellsSafe->getPointer(),cellsSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); cellsSafe->accessToMemArray().setSpecificDeallocator(0);
+ cells2->SetVoidArray(cellsSafe->getPointer(),cellsSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); cellsSafe->accessToMemArray().setSpecificDeallocator(0);
cells->SetCells(nbOfCells,cells2);
cells2->Delete();
if(faceLocationsMC!=0 && facesMC!=0)
{
vtkIdTypeArray *faces(vtkIdTypeArray::New());
- faces->SetArray(facesSafe->getPointer(),facesSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); facesSafe->accessToMemArray().setSpecificDeallocator(0);
+ faces->SetVoidArray(facesSafe->getPointer(),facesSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); facesSafe->accessToMemArray().setSpecificDeallocator(0);
vtkIdTypeArray *faceLocations(vtkIdTypeArray::New());
- faceLocations->SetArray(faceLocationsSafe->getPointer(),faceLocationsSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); faceLocationsSafe->accessToMemArray().setSpecificDeallocator(0);
+ faceLocations->SetVoidArray(faceLocationsSafe->getPointer(),faceLocationsSafe->getNbOfElems(),0,VTK_DATA_ARRAY_FREE); faceLocationsSafe->accessToMemArray().setSpecificDeallocator(0);
ret->SetCells(cellTypes,cellLocations,cells,faceLocations,faces);
faceLocations->Delete();
faces->Delete();
vtkRectilinearGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInterpolationCartesian(ParaMEDMEM::MEDCMeshMultiLev *mm) const
{
- static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+ const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
bool isInternal;
std::vector< DataArrayDouble * > arrs(mm->buildVTUArrays(isInternal));
vtkDoubleArray *vtkTmp(0);
vtkStructuredGrid *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInterpolationCurveLinear(ParaMEDMEM::MEDCurveLinearMeshMultiLev *mm) const
{
- static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+ const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
int meshStr[3]={1,1,1};
DataArrayDouble *coords(0);
std::vector<int> nodeStrct;
vtkDataSet *MEDFileFieldRepresentationLeaves::buildVTKInstanceNoTimeInterpolation(const MEDTimeReq *tr, const MEDFileFieldGlobsReal *globs, const ParaMEDMEM::MEDFileMeshes *meshes) const
{
- static const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
+ const int VTK_DATA_ARRAY_FREE=vtkDataArrayTemplate<double>::VTK_DATA_ARRAY_FREE;
vtkDataSet *ret(0);
//_fsp->isDataSetSupportEqualToThePreviousOne(i,globs);
MEDCouplingAutoRefCountObjectPtr<MEDMeshMultiLev> mml(_fsp->buildFromScratchDataSetSupport(0,globs));//0=timestep Id. Make the hypothesis that support does not change
{
#ifdef MEDREADER_USE_MPI
_ms=ParaMEDFileMeshes::New(iPart,nbOfParts,fileName);
+ int nbMeshes(_ms->getNumberOfMeshes());
+ for(int i=0;i<nbMeshes;i++)
+ {
+ ParaMEDMEM::MEDFileMesh *tmp(_ms->getMeshAtPos(i));
+ ParaMEDMEM::MEDFileUMesh *tmp2(dynamic_cast<ParaMEDMEM::MEDFileUMesh *>(tmp));
+ if(tmp2)
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp3(tmp2->zipCoords());
+ }
_fields=MEDFileFields::LoadPartOf(fileName,false,_ms);//false is important to not read the values
#else
std::ostringstream oss; oss << "MEDFileFieldRepresentationTree::loadMainStructureOfFile : request for iPart/nbOfParts=" << iPart << "/" << nbOfParts << " whereas Plugin not compiled with MPI !";
{
AppendFieldFromMeshes(_ms,_fields);
}
+ _ms->cartesianizeMe();
_fields->removeFieldsWithoutAnyTimeStep();
std::vector<std::string> meshNames(_ms->getMeshesNames());
std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileFields> > fields_per_mesh(meshNames.size());
{
MEDCouplingAutoRefCountObjectPtr<MEDFileAnyTypeFieldMultiTS> fmts((*fields)->getFieldAtPos((int)j));
std::vector< MEDCouplingAutoRefCountObjectPtr< MEDFileAnyTypeFieldMultiTS > > tmp(fmts->splitDiscretizations());
- allFMTSLeavesToDisplaySafe.insert(allFMTSLeavesToDisplaySafe.end(),tmp.begin(),tmp.end());
+ // EDF 8655
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr< MEDFileAnyTypeFieldMultiTS > >::const_iterator it=tmp.begin();it!=tmp.end();it++)
+ {
+ if(!(*it)->presenceOfMultiDiscPerGeoType())
+ allFMTSLeavesToDisplaySafe.push_back(*it);
+ else
+ {// The case of some parts of field have more than one discretization per geo type.
+ std::vector< MEDCouplingAutoRefCountObjectPtr< MEDFileAnyTypeFieldMultiTS > > subTmp((*it)->splitMultiDiscrPerGeoTypes());
+ std::size_t it0Cnt(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr< MEDFileAnyTypeFieldMultiTS > >::iterator it0=subTmp.begin();it0!=subTmp.end();it0++,it0Cnt++)//not const because setName
+ {
+ std::ostringstream oss; oss << (*it0)->getName() << "_" << std::setfill('M') << std::setw(3) << it0Cnt;
+ (*it0)->setName(oss.str());
+ allFMTSLeavesToDisplaySafe.push_back(*it0);
+ }
+ }
+ }
+ // end EDF 8655
}
}
std::vector< MEDFileAnyTypeFieldMultiTS *> allFMTSLeavesToDisplay(allFMTSLeavesToDisplaySafe.size());
this->_data_structure.resize(allFMTSLeavesPerTimeSeriesSafe.size());
for(std::size_t i=0;i<allFMTSLeavesPerTimeSeriesSafe.size();i++)
{
- vtksys_stl::vector< vtksys_stl::string > meshNamesLoc;
+ std::vector< std::string > meshNamesLoc;
std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileAnyTypeFieldMultiTS> > > splitByMeshName;
for(std::size_t j=0;j<allFMTSLeavesPerTimeSeriesSafe[i].size();j++)
{
std::string meshName(allFMTSLeavesPerTimeSeriesSafe[i][j]->getMeshName());
- vtksys_stl::vector< vtksys_stl::string >::iterator it(std::find(meshNamesLoc.begin(),meshNamesLoc.end(),meshName));
+ std::vector< std::string >::iterator it(std::find(meshNamesLoc.begin(),meshNamesLoc.end(),meshName));
if(it==meshNamesLoc.end())
{
meshNamesLoc.push_back(meshName);
os << "$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$" << std::endl;
}
+std::map<std::string,bool> MEDFileFieldRepresentationTree::dumpState() const
+{
+ std::map<std::string,bool> ret;
+ for(std::vector< std::vector< std::vector< MEDFileFieldRepresentationLeaves > > >::const_iterator it0=_data_structure.begin();it0!=_data_structure.end();it0++)
+ for(std::vector< std::vector< MEDFileFieldRepresentationLeaves > >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ for(std::vector< MEDFileFieldRepresentationLeaves >::const_iterator it2=(*it1).begin();it2!=(*it1).end();it2++)
+ (*it2).dumpState(ret);
+ return ret;
+}
+
void MEDFileFieldRepresentationTree::AppendFieldFromMeshes(const ParaMEDMEM::MEDFileMeshes *ms, ParaMEDMEM::MEDFileFields *ret)
{
+ if(!ret)
+ throw INTERP_KERNEL::Exception("MEDFileFieldRepresentationTree::AppendFieldFromMeshes : internal error ! NULL ret !");
for(int i=0;i<ms->getNumberOfMeshes();i++)
{
MEDFileMesh *mm(ms->getMeshAtPos(i));
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDFileField1TS> f1tsMultiLev(ParaMEDMEM::MEDFileField1TS::New());
MEDFileUMesh *mmu(dynamic_cast<MEDFileUMesh *>(mm));
if(mmu)
- {
- for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
- {
- std::vector<INTERP_KERNEL::NormalizedCellType> gts(mmu->getGeoTypesAtLevel(*it));
- for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator gt=gts.begin();gt!=gts.end();gt++)
- {
- ParaMEDMEM::MEDCouplingMesh *m(mmu->getDirectUndergroundSingleGeoTypeMesh(*gt));
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
- f->setMesh(m);
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
- arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
- arr->iota();
- f->setArray(arr);
- f->setName(mm->getName());
- f1tsMultiLev->setFieldNoProfileSBT(f);
- }
- }
- if(levs.empty())
- {
- std::vector<int> levsExt(mm->getNonEmptyLevelsExt());
- if(levsExt.size()==levs.size()+1)
- {
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getGenMeshAtLevel(1));
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_NODES));
- f->setMesh(m);
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(m->getNumberOfNodes());
- arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
- arr->iota(); f->setArray(arr);
- f->setName(mm->getName());
- f1tsMultiLev->setFieldNoProfileSBT(f);
- }
- else
- continue;
- }
- }
+ {
+ for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
+ {
+ std::vector<INTERP_KERNEL::NormalizedCellType> gts(mmu->getGeoTypesAtLevel(*it));
+ for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator gt=gts.begin();gt!=gts.end();gt++)
+ {
+ ParaMEDMEM::MEDCouplingMesh *m(mmu->getDirectUndergroundSingleGeoTypeMesh(*gt));
+
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
+ f->setMesh(m);
+
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
+ arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+ arr->iota();
+ f->setArray(arr);
+ f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+ f1tsMultiLev->setFieldNoProfileSBT(f);
+ }
+ }
+ if(levs.empty())
+ {
+ std::vector<int> levsExt(mm->getNonEmptyLevelsExt());
+ if(levsExt.size()==levs.size()+1)
+ {
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getMeshAtLevel(1));
+
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_NODES));
+ f->setMesh(m);
+
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(m->getNumberOfNodes());
+ arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+ arr->iota(); f->setArray(arr);
+ f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+ f1tsMultiLev->setFieldNoProfileSBT(f);
+ }
+ else
+ continue;
+ }
+ }
else
- {
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getGenMeshAtLevel(0));
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
- f->setMesh(m);
- ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
- arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
- arr->iota();
- f->setArray(arr);
- f->setName(mm->getName());
- f1tsMultiLev->setFieldNoProfileSBT(f);
- }
+ {
+ ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingMesh> m(mm->getMeshAtLevel(0));
+
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDCouplingFieldDouble> f(ParaMEDMEM::MEDCouplingFieldDouble::New(ParaMEDMEM::ON_CELLS));
+ f->setMesh(m);
+
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::DataArrayDouble> arr(ParaMEDMEM::DataArrayDouble::New()); arr->alloc(f->getNumberOfTuplesExpected());
+ arr->setInfoOnComponent(0,std::string(COMPO_STR_TO_LOCATE_MESH_DA));
+ arr->iota();
+ f->setArray(arr);
+ f->setName(BuildAUniqueArrayNameForMesh(mm->getName(),ret));
+ f1tsMultiLev->setFieldNoProfileSBT(f);
+ }
//
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDFileFieldMultiTS> fmtsMultiLev(ParaMEDMEM::MEDFileFieldMultiTS::New());
fmtsMultiLev->pushBackTimeStep(f1tsMultiLev);
}
}
+std::string MEDFileFieldRepresentationTree::BuildAUniqueArrayNameForMesh(const std::string& meshName, const ParaMEDMEM::MEDFileFields *ret)
+{
+ const char KEY_STR_TO_AVOID_COLLIDE[]="MESH@";
+ if(!ret)
+ throw INTERP_KERNEL::Exception("MEDFileFieldRepresentationTree::BuildAUniqueArrayNameForMesh : internal error ! NULL ret !");
+ std::vector<std::string> fieldNamesAlreadyExisting(ret->getFieldsNames());
+ if(std::find(fieldNamesAlreadyExisting.begin(),fieldNamesAlreadyExisting.end(),meshName)==fieldNamesAlreadyExisting.end())
+ return meshName;
+ std::string tmpName(KEY_STR_TO_AVOID_COLLIDE); tmpName+=meshName;
+ while(std::find(fieldNamesAlreadyExisting.begin(),fieldNamesAlreadyExisting.end(),tmpName)!=fieldNamesAlreadyExisting.end())
+ tmpName=std::string(KEY_STR_TO_AVOID_COLLIDE)+tmpName;
+ return tmpName;
+}
+
ParaMEDMEM::MEDFileFields *MEDFileFieldRepresentationTree::BuildFieldFromMeshes(const ParaMEDMEM::MEDFileMeshes *ms)
{
ParaMEDMEM::MEDCouplingAutoRefCountObjectPtr<ParaMEDMEM::MEDFileFields> ret(ParaMEDMEM::MEDFileFields::New());
*/
std::string MEDFileFieldRepresentationTree::PostProcessFieldName(const std::string& fullFieldName)
{
- static const char SEP('_');
+ const char SEP('_');
std::vector<std::string> v(SplitFieldNameIntoParts(fullFieldName,SEP));
if(v.empty())
return fullFieldName;//should never happen
