-// Copyright (C) 2007-2014 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2020 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "InterpolationOptions.hxx"
#include <mpi.h>
+#include <string>
-namespace ParaMEDMEM
+namespace ICoCo {
+ class MEDField;
+}
+
+namespace MEDCoupling
{
class OverlapInterpolationMatrix;
+ class OverlapElementLocator;
class ProcessorGroup;
class ParaFIELD;
+ /*!
+ \anchor OverlapDEC-det
+ \class OverlapDEC
+
+ \section OverlapDEC-over Overview
+
+ The \c OverlapDEC enables the \ref InterpKerRemapGlobal "conservative remapping" of fields between
+ two parallel codes. This remapping is based on the computation of intersection volumes on
+ a \b single \b processor \b group. On this processor group are defined two field-templates called A
+ and B. The computation is possible for 3D meshes, 2D meshes, 3D-surface meshes, 1D meshes and
+ 2D-curve meshes. Dimensions must be similar for the distribution templates A and B.
+
+ The main difference with \ref InterpKernelDEC-det "InterpKernelDEC" is that this
+ \ref para-dec "DEC" works with a *single* processor group, in which processors will share the work.
+ Consequently each processor manages two \ref MEDCouplingFieldTemplatesPage "field templates" (A and B)
+ called source and target.
+ Furthermore all processors in the processor group cooperate in the global interpolation matrix
+ computation. In this respect \c InterpKernelDEC is a specialization of \c OverlapDEC.
+
+ \section ParaMEDMEMOverlapDECAlgorithmDescription Algorithm description
+
+ Let's consider the following use case that is ran in ParaMEDMEMTest_OverlapDEC.cxx to describes
+ the different steps of the computation. The processor group contains 3 processors.
+ \anchor ParaMEDMEMOverlapDECImgTest1
+ \image html OverlapDEC1.png "Example split of the source and target mesh among the 3 procs"
+
+ \subsection ParaMEDMEMOverlapDECAlgoStep1 Step 1 : Bounding box exchange and global interaction between procs computation.
+
+ In order to reduce as much as possible the amount of communications between distant processors,
+ every processor computes a bounding box for A and B. Then a AllToAll communication is performed
+ so that
+ every processor can compute the \b global interactions between processor.
+ This computation leads every processor to compute the same global TODO list expressed as a list
+ of pair. A pair ( x, y ) means that proc \b x fieldtemplate A can interact with fieltemplate B of
+ proc \b y because the two bounding boxes interact.
+ In the \ref ParaMEDMEMOverlapDECImgTest1 "example above" this computation leads to the following
+ a \b global TODO list :
+
+ \b (0,0),(0,1),(1,0),(1,2),(2,0),(2,1),(2,2)
+
+ Here the pair (0,2) does not appear because the bounding box of fieldtemplateA of proc#2 does
+ not intersect that of fieldtemplate B on proc#0.
+
+ Stage performed by MEDCoupling::OverlapElementLocator::computeBoundingBoxes.
+
+ \subsection ParaMEDMEMOverlapDECAlgoStep2 Step 2 : Computation of local TODO list
+
+ Starting from the global interaction previously computed in \ref ParaMEDMEMOverlapDECAlgoStep1
+ "Step 1", each proc computes the TODO list per proc.
+ The following rules is chosen : a pair (x,y) can be treated by either proc \#x or proc \#y,
+ in order to reduce the amount of data transfers among
+ processors. The algorithm chosen for load balancing is the following : Each processor has
+ an empty \b local TODO list at the beginning. Then for each pair (k,m) in
+ \b global TODO list, if proc\#k has less temporary local list than proc\#m pair, (k,m) is added
+ to temporary local TODO list of proc\#k.
+ If proc\#m has less temporary local TODO list than proc\#k pair, (k,m) is added to temporary
+ local TODO list of proc\#m.
+ If proc\#k and proc\#m have the same amount of temporary local TODO list pair, (k,m) is added to
+ temporary local TODO list of proc\#k.
+
+ In the \ref ParaMEDMEMOverlapDECImgTest1 "example above" this computation leads to the following
+ local TODO list :
+
+ - proc\#0 : (0,0)
+ - proc\#1 : (0,1),(1,0)
+ - proc\#2 : (1,2),(2,0),(2,1),(2,2)
+
+ The algorithm described here is not perfect for this use case, we hope to enhance it soon.
+
+ At this stage each proc knows precisely its \b local TODO list (with regard to interpolation).
+ The \b local TODO list of other procs than local
+ is kept for future computations.
+
+ \subsection ParaMEDMEMOverlapDECAlgoStep3 Step 3 : Matrix echange between procs
+
+ Knowing the \b local TODO list, the aim now is to exchange field-templates between procs.
+ Each proc computes knowing TODO list per
+ proc computed in \ref ParaMEDMEMOverlapDECAlgoStep2 "Step 2" the exchange TODO list :
+
+ In the \ref ParaMEDMEMOverlapDECImgTest1 "example above" the exchange TODO list gives the
+ following results :
+
+ Sending TODO list per proc :
+
+ - proc \#0 : Send fieldtemplate A to Proc\#1, Send fieldtemplate B to Proc\#1, Send fieldtemplate
+ B to Proc\#2
+ - Proc \#1 : Send fieldtemplate A to Proc\#2, Send fieldtemplate B to Proc\#2
+ - Proc \#2 : No send.
+
+ Receiving TODO list per proc :
+
+ - proc \#0 : No receiving
+ - proc \#1 : receiving fieldtemplate A from Proc\#0, receiving fieldtemplate B from Proc\#0
+ - proc \#2 : receiving fieldtemplate B from Proc\#0, receiving fieldtemplate A from Proc\#1,
+ receiving fieldtemplate B from Proc\#1
+
+ To avoid as much as possible large volumes of transfers between procs, only relevant parts of
+ meshes are sent. In order for proc\#k to send fieldtemplate A to fieldtemplate B
+ of proc \#m., proc\#k computes the part of mesh A contained in the boundingbox B of proc\#m. It
+ implies that the corresponding cellIds or nodeIds of the
+ corresponding part are sent to proc \#m too.
+
+ Let's consider the couple (k,m) in the TODO list. This couple is treated by either k or m as
+ seen in \ref ParaMEDMEMOverlapDECAlgoStep2 "here in Step2".
+
+ As will be dealt in Step 6, for final matrix-vector computations, the resulting matrix of the
+ couple (k,m) wherever it is computed (proc \#k or proc \#m)
+ will be stored in \b proc\#m.
+
+ - If proc \#k is in charge (performs the matrix computation) for this couple (k,m), target ids
+ (cells or nodes) of the mesh in proc \#m are renumbered, because proc \#m has seelected a sub mesh
+ of the target mesh to avoid large amounts of data to transfer. In this case as proc \#m is ultimately
+ in charge of the matrix, proc \#k must keep preciously the
+ source ids needed to be sent to proc\#m. No problem will appear for matrix assembling in proc m
+ for source ids because no restriction was done.
+ Concerning source ids to be sent for the matrix-vector computation, proc k will know precisely
+ which source ids field values to send to proc \#m.
+ This is embodied by OverlapMapping::keepTracksOfTargetIds in proc m.
+
+ - If proc \#m is in charge (performs matrix computation) for this couple (k,m), source ids (cells
+ or nodes) of the mesh in proc \#k are renumbered, because proc \#k has selected a sub mesh of the
+ source mesh to avoid large amounts of data to transfer. In this case as proc \#k is ultimately
+ in charge of the matrix, proc \#m receives the source ids
+ from remote proc \#k, and thus the matrix is directly correct, no need for renumbering as
+ in \ref ParaMEDMEMOverlapDECAlgoStep5 "Step 5". However proc \#k must
+ keep track of the ids sent to proc \#m for the matrix-vector computation.
+ This is incarnated by OverlapMapping::keepTracksOfSourceIds in proc k.
+
+ This step is performed in MEDCoupling::OverlapElementLocator::exchangeMeshes method.
+
+ \subsection ParaMEDMEMOverlapDECAlgoStep4 Step 4 : Computation of the interpolation matrix
+
+ After mesh exchange in \ref ParaMEDMEMOverlapDECAlgoStep3 "Step3" each processor has all the
+ required information to treat its \b local TODO list computed in
+ \ref ParaMEDMEMOverlapDECAlgoStep2 "Step2". This step is potentially CPU costly, which is why
+ the \b local TODO list per proc is expected to
+ be as well balanced as possible.
+
+ The interpolation is performed as the \ref MEDCoupling::MEDCouplingRemapper "remapper" does.
+
+ This operation is performed by OverlapInterpolationMatrix::addContribution method.
+
+ \subsection ParaMEDMEMOverlapDECAlgoStep5 Step 5 : Global matrix construction.
+
+ After having performed the TODO list at the end of \ref ParaMEDMEMOverlapDECAlgoStep4 "Step4"
+ we need to assemble the final matrix.
+
+ The final aim is to have a distributed matrix \f$ M_k \f$ on each proc\#k. In order to reduce
+ data exchange during the matrix product process,
+ \f$ M_k \f$ is built using sizeof(Proc group) \c std::vector< \c std::map<int,double> \c >.
+
+ For a proc\#k, it is necessary to fetch info of all matrices built in
+ \ref ParaMEDMEMOverlapDECAlgoStep4 "Step4" where the first element in pair (i,j)
+ is equal to k.
+
+ After this step, the matrix repartition is the following after a call to
+ MEDCoupling::OverlapMapping::prepare :
+
+ - proc\#0 : (0,0),(1,0),(2,0)
+ - proc\#1 : (0,1),(2,1)
+ - proc\#2 : (1,2),(2,2)
+
+ Tuple (2,1) computed on proc 2 is stored in proc 1 after execution of the function
+ "prepare". This is an example of item 0 in \ref ParaMEDMEMOverlapDECAlgoStep2 "Step2".
+ Tuple (0,1) computed on proc 1 is stored in proc 1 too. This is an example of item 1 in \ref ParaMEDMEMOverlapDECAlgoStep2 "Step2".
+
+ In the end MEDCoupling::OverlapMapping::_proc_ids_to_send_vector_st will contain :
+
+ - Proc\#0 : 0,1
+ - Proc\#1 : 0,2
+ - Proc\#2 : 0,1,2
+
+ In the end MEDCoupling::OverlapMapping::_proc_ids_to_recv_vector_st will contain :
+
+ - Proc\#0 : 0,1,2
+ - Proc\#1 : 0,2
+ - Proc\#2 : 1,2
+
+ The method in charge to perform this is : MEDCoupling::OverlapMapping::prepare.
+ */
+
class OverlapDEC : public DEC, public INTERP_KERNEL::InterpolationOptions
{
public:
void synchronize();
void attachSourceLocalField(ParaFIELD *field, bool ownPt=false);
void attachTargetLocalField(ParaFIELD *field, bool ownPt=false);
- ProcessorGroup *getGrp() { return _group; }
+ void attachSourceLocalField(MEDCouplingFieldDouble *field);
+ void attachTargetLocalField(MEDCouplingFieldDouble *field);
+ void attachSourceLocalField(ICoCo::MEDField *field);
+ void attachTargetLocalField(ICoCo::MEDField *field);
+ ProcessorGroup *getGroup() { return _group; }
bool isInGroup() const;
+
+ void setDefaultValue(double val) {_default_field_value = val;}
+ //! 0 means initial algo from Antho, 1 or 2 means Adrien's algo (2 should be better). Make your choice :-))
+ void setWorkSharingAlgo(int method) { _load_balancing_algo = method; }
+
+ void debugPrintWorkSharing(std::ostream & ostr) const;
private:
+ int _load_balancing_algo;
+
bool _own_group;
OverlapInterpolationMatrix* _interpolation_matrix;
+ OverlapElementLocator* _locator;
ProcessorGroup *_group;
- private:
+
+ double _default_field_value;
+
ParaFIELD *_source_field;
bool _own_source_field;
ParaFIELD *_target_field;
bool _own_target_field;
+ MPI_Comm _comm;
};
}