else:
import pickle
+class StdOutRedirect(object):
+ def __init__(self,fileName):
+ import os,sys
+ sys.stderr.flush()
+ self.stdoutOld=os.dup(2)
+ self.fdOfSinkFile=os.open(fileName,os.O_CREAT | os.O_RDWR)
+ fd2=os.dup2(self.fdOfSinkFile,2)
+ self.origPyVal=sys.stderr
+ class FlushFile(object):
+ def __init__(self,f):
+ self.f=f
+ def write(self,st):
+ self.f.write(st)
+ self.f.flush()
+ def flush(self):
+ return self.f.flush()
+ def isatty(self):
+ return self.f.isatty()
+ def close(self):
+ os.fsync(self.f)
+ self.f.close();
+ sys.stderr=FlushFile(os.fdopen(self.fdOfSinkFile,"w"))
+ def __del__(self):
+ import os,sys
+ sys.stderr.close()
+ sys.stderr=self.origPyVal
+ os.fsync(2)
+ os.dup2(self.stdoutOld,2)
+ os.close(self.stdoutOld)
+
class MEDLoaderTest3(unittest.TestCase):
def testMEDMesh1(self):
fileName="Pyfile18.med"
ff1.setTime(3,4,2.3)
itt,orr,ti=ff1.getTime()
self.assertEqual(3,itt); self.assertEqual(4,orr); self.assertAlmostEqual(2.3,ti,14);
+ f1.setTime(5.5,7,8)
+ ff1.copyTimeInfoFrom(f1)
+ itt,orr,ti=ff1.getTime()
+ self.assertEqual(7,itt); self.assertEqual(8,orr); self.assertAlmostEqual(5.5,ti,14);
da,infos=ff1.getUndergroundDataArrayExt()
f2.getArray().setName(da.getName())#da has the same name than f2
self.assertTrue(da.isEqual(f2.getArray(),1e-12))
pass
# Tricky test of the case of in a MED file containing a Field on GAUSS_NE is lying on a profile that is reality represents all the geom entities of a level.
# By default when using setFieldProfile method such profile is not created because it is not useful ! So here a trick is used to force MEDLoader to do that
- # for the necessity of the test ! The idea is too create artificially a mesh having one more fictious cell per type and to roll back right after !
+ # for the necessity of the test ! The idea is too create artificially a mesh having one more fictitious cell per type and to roll back right after !
def testMEDField15(self):
fname="Pyfile36.med"
m0=MEDLoaderDataForTest.build2DMesh_1()
del tes0
#
tes1=f.getFieldOnMeshAtLevel(ON_NODES,1,m)
- self.assertEqual(ON_CELLS,tes1.getTypeOfField())# it is not a bug even if ON_NODES has been sepecified
+ self.assertEqual(ON_CELLS,tes1.getTypeOfField())# it is not a bug even if ON_NODES has been specified
self.assertEqual(0,tes1.getMesh().getMeshDimension())
self.assertEqual(2,tes1.getMesh().getNumberOfCells())
self.assertEqual(135,tes1.getMesh().getNumberOfNodes())
pass
#
tes3=f.getFieldOnMeshAtLevel(ON_NODES,1,m)
- self.assertEqual(ON_CELLS,tes3.getTypeOfField())# it is not a bug even if ON_NODES has been sepecified
+ self.assertEqual(ON_CELLS,tes3.getTypeOfField())# it is not a bug even if ON_NODES has been specified
self.assertEqual(0,tes3.getMesh().getMeshDimension())
self.assertEqual(2,tes3.getMesh().getNumberOfCells())
self.assertEqual(135,tes3.getMesh().getNumberOfNodes())
mm.write(fname,2)
def testBuildInnerBoundaryAlongM1Group4(self):
- """ Test case where cells touch the M1 group on some nodes only and not on full egdes (triangle mesh for ex)
+ """ Test case where cells touch the M1 group on some nodes only and not on full edges (triangle mesh for ex)
"""
coo = DataArrayDouble([0.,0., 1.,0., 2.,0., 3.,0.,
0.,1., 1.,1., 2.,1., 3.,1.,
mm.setFamiliesOnGroup("grp0",["MyOtherFam"])
mm.setFamiliesOnGroup("grpA",["MyOther-1"])
#
+ self.assertTrue(mm.getNodeFamiliesArr(["MyFam","MyOtherFam"]).isEqual(DataArrayInt([1,3,4,12]))) # find family id 2 and 3 into famCoo
+ #
daTest=DataArrayInt([1,3,4,6,9,10,12]) ; daTest.setName("grp1")
mm.addNodeGroup(daTest)
+ self.assertTrue(mm.getNodeGroupArr(daTest.getName()).isEqual(daTest)) # the node group has been pushed right before -> now read it
+ self.assertTrue(mm.getNodeGroupsArr(["grp1","grpA"]).isEqual(DataArrayInt([1,3,4,6,9,10,11,12])))#daTest+[11] because 11 is the rank of -1 (MyOther-1) in famCoo
+ #
+ expect1=DataArrayInt([1,4]) ; expect1.setName("MyFam")
+ self.assertTrue(mm.getNodeFamilyArr(expect1.getName()).isEqual(expect1))
+ #
self.assertTrue(mm.getGroupArr(1,daTest.getName()).isEqual(daTest))
self.assertTrue(mm.getFamilyFieldAtLevel(1).isEqual(DataArrayInt([6,2,6,8,2,6,5,6,6,7,7,4,8])))
for lev,arr in [(0,da0),(-1,da1),(-2,da2)]:
ff1.setFieldNoProfileSBT(f1)
a=ff1.getFieldOnMeshAtLevel(0,ON_CELLS,mm1)
self.assertEqual(a.getArray().getInfoOnComponents(),['power [MW/m^3]','density [g/cm^3]','temperature [K]'])
- self.assertTrue(a.isEqual(f1,1e-12,1e-12))
+ self.assertTrue(a.isEqual(f1,1e-12,0))
ff1.write(fname,0)
+ a,b=ff1.getUndergroundDataArrayExt()
+ self.assertEqual(a.getHiddenCppPointer(),ff1.getUndergroundDataArray().getHiddenCppPointer())
+ self.assertEqual(b,[((3,0),(0,2)),((4,0),(2,4)),((6,0),(4,5)),((5,0),(5,6))])
ff2=MEDFileAnyTypeField1TS.New(fname)
self.assertEqual(ff2.getName(),"VectorFieldOnCells")
self.assertEqual(ff2.getTime(),[0,1,2.0])
self.assertTrue(isinstance(ff2,MEDFileIntField1TS))
a=ff1.getFieldOnMeshAtLevel(ON_CELLS,0,mm1)
self.assertEqual(a.getArray().getInfoOnComponents(),['power [MW/m^3]','density [g/cm^3]','temperature [K]'])
- self.assertTrue(a.isEqual(f1,1e-12,1e-12))
+ self.assertTrue(a.isEqual(f1,1e-12,0))
ff2.setTime(1,2,3.)
c=ff2.getUndergroundDataArray() ; c*=2
- ff2.write(fname,0) # 2 time steps in
+ ff2.write(fname,0) # 2 time steps in
ffs1=MEDFileAnyTypeFieldMultiTS.New(fname,"VectorFieldOnCells")
self.assertEqual(ffs1.getTimeSteps(),[(0, 1, 2.0), (1, 2, 3.0)])
self.assertEqual(len(ffs1),2)
self.assertTrue(isinstance(ffs1,MEDFileIntFieldMultiTS))
a=ffs1[2.].getFieldOnMeshAtLevel(ON_CELLS,0,mm1)
- self.assertTrue(a.isEqual(f1,1e-12,1e-12))
+ self.assertTrue(a.isEqual(f1,1e-12,0))
a=ffs1.getFieldOnMeshAtLevel(ON_CELLS,0,1,0,mm1)
- self.assertTrue(a.isEqual(f1,1e-12,1e-12))
+ self.assertTrue(a.isEqual(f1,1e-12,0))
it=ffs1.__iter__() ; it.next() ; ff2bis=it.next()
a=ff2bis.getFieldOnMeshAtLevel(0,ON_CELLS,mm1)
self.assertTrue(a.getArray().isEqual(2*f1.getArray()))
f1.setTime(3.,1,2) ; f1.getArray()[:]*=2
- self.assertTrue(a.isEqual(f1,1e-12,1e-12)) ; f1.getArray()[:]/=2
+ self.assertTrue(a.isEqual(f1,1e-12,0)) ; f1.getArray()[:]/=2
bc=DataArrayInt(6,3) ; bc[:]=0 ; bc.setInfoOnComponents(['power [MW/m^3]','density [g/cm^3]','temperature [K]'])
for it in ffs1:
a=it.getFieldOnMeshAtLevel(ON_CELLS,0,mm1)
pass
def testMEDFileUMeshSetName(self):
- """ This test is a small but important one for MEDReader in sauv mode. When .sauv file is loaded the convertion is performed in memory and a preparation is done then.
+ """ This test is a small but important one for MEDReader in sauv mode. When .sauv file is loaded the conversion is performed in memory and a preparation is done then.
This preparation makes access to internal MEDCouplingMesh pointers whose name must be updated.
"""
fname="Pyfile79.med"
pass
def testMEDFileUMeshLoadPart1(self):
- """ This method tests MEDFileUMesh.LoadPart that loads only a part of a specified mesh in a MED file. The part is specfied using a slice of cell ids. Only nodes on which cells lies are loaded to reduce at most the amount of
+ """ This method tests MEDFileUMesh.LoadPart that loads only a part of a specified mesh in a MED file. The part is specified using a slice of cell ids. Only nodes on which cells lies are loaded to reduce at most the amount of
memory of the returned instance.
"""
fileName="Pyfile81.med"
grpExp=grp+delta ; grpExp.setName("%s_node"%grp.getName())
self.assertTrue(mm.getGroupArr(1,"%s_node"%grp.getName()).isEqual(grpExp))
pass
-
- pass
+
def testMEDFileJoint1(self):
fileName="Pyfile92.med"
coo=DataArrayDouble([(0,0,0),(1,0,0),(2,0,0)])
self.assertRaises( InterpKernelException, jointsR.getJointAtPos,1)
self.assertRaises( InterpKernelException, jointsR.destroyJointAtPos,1)
jointsR.destroyJointAtPos(0)
-
- pass
+ pass
+
def testMEDFileJoint2(self):
fileNameWr="Pyfile93.med"
coo=DataArrayDouble([(0,0,0),(1,0,0),(2,0,0)])
""" EDF11242 : check status of MED file calls to detect problems immediately. Sorry this test generates awful messages !"""
fname="Pyfile94.med"
errfname="Pyfile94.err"
- class StdOutRedirect(object):
- def __init__(self,fileName):
- import os,sys
- sys.stderr.flush()
- self.stdoutOld=os.dup(2)
- self.fdOfSinkFile=os.open(fileName,os.O_CREAT | os.O_RDWR)
- fd2=os.dup2(self.fdOfSinkFile,2)
- self.origPyVal=sys.stderr
- class FlushFile(object):
- def __init__(self,f):
- self.f=f
- def write(self,st):
- self.f.write(st)
- self.f.flush()
- def flush(self):
- return self.f.flush()
- def isatty(self):
- return self.f.isatty()
- sys.stderr=FlushFile(os.fdopen(self.fdOfSinkFile,"w"))
- def __del__(self):
- import os,sys
- sys.stderr=self.origPyVal
- if sys.version_info.major >= 3:
- self.fdOfSinkFile.close()
- pass
- #os.fsync(self.fdOfSinkFile)
- os.fsync(2)
- os.dup2(self.stdoutOld,2)
- os.close(self.stdoutOld)
+
import os
# first clean file if needed
if os.path.exists(fname):
self.assertEqual(mm.getFamiliesIdsOnGroup("RID"),(-4,3))
mm.write(fileName,2)
# now read such funny file !
- mm2=MEDFileMesh.New(fileName) # <- normaly mdump of Pyfile98.med must contain only RID and FAMILLE_ZERO families.
+ mm2=MEDFileMesh.New(fileName) # <- normally mdump of Pyfile98.med must contain only RID and FAMILLE_ZERO families.
self.assertTrue(mm.isEqual(mm2,1e-16))
self.assertEqual(mm2.getFamiliesNames(),("FAMILLE_ZERO",'RIDF!/__\\!0000','RIDF!/__\\!0001'))
self.assertEqual(mm2.getFamiliesNamesWithFilePointOfView(),("FAMILLE_ZERO","RIDF","RIDF"))
mm=MEDFileMesh.New(fname)
f1ts=MEDFileIntField1TS(fname,fieldName,6,7)
ftst0=f1ts.field(mm)
- self.assertTrue(f0.isEqual(ftst0,1e-12,1e-12))
+ self.assertTrue(f0.isEqual(ftst0,1e-12,0))
f1ts=MEDFileIntField1TS(fname,fieldName,8,9)
ftst1=f1ts.field(mm)
- self.assertTrue(f1.isEqual(ftst1,1e-12,1e-12))
+ self.assertTrue(f1.isEqual(ftst1,1e-12,0))
fmts=MEDFileIntFieldMultiTS(fname,fieldName)
- self.assertTrue(f1.isEqual(fmts.field(8,9,mm),1e-12,1e-12))
+ self.assertTrue(f1.isEqual(fmts.field(8,9,mm),1e-12,0))
## Basic test on nodes on top level
f2=MEDCouplingFieldInt(ON_NODES) ; arr2=DataArrayInt([200,201,202]) ; arr2.setInfoOnComponent(0,"tutu") ; f2.setArray(arr2) ; f2.setMesh(m) ; f2.setTime(22.,23,24)
f2.setName(fieldName)
#
mm=MEDFileMesh.New(fname)
f1ts=MEDFileIntField1TS(fname,fieldName,23,24)
- self.assertTrue(f2.isEqual(f1ts.field(mm),1e-12,1e-12))
+ self.assertTrue(f2.isEqual(f1ts.field(mm),1e-12,0))
fmts=MEDFileIntFieldMultiTS(fname,fieldName)
- self.assertTrue(f2.isEqual(fmts.field(23,24,mm),1e-12,1e-12))
+ self.assertTrue(f2.isEqual(fmts.field(23,24,mm),1e-12,0))
## Node on elements
f3=MEDCouplingFieldInt(ON_GAUSS_NE) ; f3.setMesh(m) ; arr3=DataArrayInt([0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19]) ; f3.setArray(arr3) ; f3.setTime(0.5,2,3)
f3.setName(fieldName) ; f3.checkConsistencyLight()
#
mm=MEDFileMesh.New(fname)
f1ts=MEDFileIntField1TS(fname,fieldName,2,3)
- self.assertTrue(f3.isEqual(f1ts.field(mm),1e-12,1e-12))
+ self.assertTrue(f3.isEqual(f1ts.field(mm),1e-12,0))
## Gauss
f4=MEDCouplingFieldInt(ON_GAUSS_PT) ; f4.setMesh(m) ; f4.setName(fieldName)
f4.setGaussLocalizationOnType(NORM_TRI3,[0.,0.,1.,0.,1.,1.],[0.1,0.1, 0.2,0.2, 0.3,0.3, 0.4,0.4, 0.5,0.5],[0.2,0.3,0.1,0.05,0.35])
#
mm=MEDFileMesh.New(fname)
f1ts=MEDFileIntField1TS(fname,fieldName,4,5)
- self.assertTrue(f4.isEqual(f1ts.field(mm),1e-12,1e-12))
+ self.assertTrue(f4.isEqual(f1ts.field(mm),1e-12,0))
pass
def testMEDFileFieldEasyField3(self):
f1ts=MEDFileIntField1TS() ; f1ts.setFieldNoProfileSBT(f1) ; f1ts.write(fname,0)
#
mm=MEDFileMesh.New(fname) ; f1ts=MEDFileIntField1TS(fname,fieldName,1,2)
- self.assertTrue(f1.isEqual(f1ts.field(mm),1e-12,1e-12))
+ self.assertTrue(f1.isEqual(f1ts.field(mm),1e-12,0))
# here f1 lying on level -1 not 0 check if "field" method detect it !
f1=MEDCouplingFieldInt(ON_CELLS) ; f1.setName(fieldName) ; f1.setArray(DataArrayInt([(0,100),(1,101),(0,100),(1,101),(0,100),(1,101)]))
f1.setMesh(mm[-1]) # -1 is very important
f1ts=MEDFileIntField1TS() ; f1ts.setFieldNoProfileSBT(f1) ; f1ts.write(fname,0)
#
mm=MEDFileMesh.New(fname) ; f1ts=MEDFileIntField1TS(fname,fieldName,3,4)
- self.assertTrue(f1.isEqual(f1ts.field(mm),1e-12,1e-12))
+ self.assertTrue(f1.isEqual(f1ts.field(mm),1e-12,0))
# nodes on elements
f3=MEDCouplingFieldInt(ON_GAUSS_NE)
f3.setMesh(mm[-1]) # this line is important
mm.write(fname,2) ; ff=MEDFileIntField1TS() ; ff.setFieldNoProfileSBT(f3) ; ff.write(fname,0)
#
mm=MEDFileMesh.New(fname) ; f1ts=MEDFileIntField1TS(fname,fieldName,2,3)
- self.assertTrue(f3.isEqual(f1ts.field(mm),1e-12,1e-12))
+ self.assertTrue(f3.isEqual(f1ts.field(mm),1e-12,0))
# gauss
f4=MEDCouplingFieldInt(ON_GAUSS_PT)
f4.setMesh(mm[-1]) # this line is important
f4.checkConsistencyLight()
mm.write(fname,2) ; ff=MEDFileIntField1TS() ; ff.setFieldNoProfileSBT(f4) ; ff.write(fname,0)
mm=MEDFileMesh.New(fname) ; f1ts=MEDFileIntField1TS(fname,fieldName,4,5)
- self.assertTrue(f4.isEqual(f1ts.field(mm),1e-12,1e-12))
+ self.assertTrue(f4.isEqual(f1ts.field(mm),1e-12,0))
pass
def testMEDFileFieldEasyField5(self):
mm=MEDFileUMesh() ; mm[0]=m
mm.setFamilyId("FAMILLE_ZERO",0)
#
- mm.write30(fname,2)
- assert(LooseVersion(MEDFileVersionOfFileStr(fname)).version[:2]==[3,0]) # checks that just written MED file has a version == 3.0.x
+ mm.write33(fname,2)
+ assert(LooseVersion(MEDFileVersionOfFileStr(fname)).version[:2]==[3,3]) # checks that just written MED file has a version == 3.0.x
mm2=MEDFileUMesh(fname)
self.assertTrue(mm.isEqual(mm2,1e-12))
#
fmts5=pickle.loads(st)
self.assertEqual(len(fs4[0]),len(fmts5))
self.assertTrue(isinstance(fmts5,MEDFileIntFieldMultiTS))
- self.assertTrue(fmts5[0].field(ms4[0]).isEqual((fs4[0][0]).field(ms4[0]),1e-12,1e-12))
+ self.assertTrue(fmts5[0].field(ms4[0]).isEqual((fs4[0][0]).field(ms4[0]),1e-12,0))
# MEDFileIntField1TS
st=pickle.dumps(fs4[0][0],pickle.HIGHEST_PROTOCOL)
f1ts6=pickle.loads(st)
self.assertTrue(isinstance(f1ts6,MEDFileIntField1TS))
- self.assertTrue(f1ts6.field(ms4[0]).isEqual((fs4[0][0]).field(ms4[0]),1e-12,1e-12))
+ self.assertTrue(f1ts6.field(ms4[0]).isEqual((fs4[0][0]).field(ms4[0]),1e-12,0))
# MEDFileParameters
self.testParameters1()# generates Pyfile56.med
params=MEDFileParameters("Pyfile56.med")
self.assertEqual(a.getArray().getInfoOnComponents(),['power [MW/m^3]','density [g/cm^3]','temperature [K]'])
self.assertTrue(a.isEqual(f1,1e-12,1e-12))
ff1.write(fname,0)
+ a,b=ff1.getUndergroundDataArrayExt()
+ self.assertEqual(a.getHiddenCppPointer(),ff1.getUndergroundDataArray().getHiddenCppPointer())
+ self.assertEqual(b,[((3,0),(0,2)),((4,0),(2,4)),((6,0),(4,5)),((5,0),(5,6))])
ff2=MEDFileAnyTypeField1TS.New(fname)
self.assertEqual(ff2.getName(),"VectorFieldOnCells")
self.assertEqual(ff2.getTime(),[0,1,2.0])
self.assertEqual(fs.getMeshesNames(),('3DSurfMesh','3DSurfMesh','3DSurfMesh','3DSurfMesh'))
self.assertTrue(not fs.changeMeshNames([('3DSurfMesh_1','3DSurfMesh')]))
pass
+
+ def testPenta18_1(self):
+ """EDF8478 : Test of read/write of penta18"""
+ fname="Pyfile115.med"
+ arr=DataArrayDouble([
+ (0.,1.,1.),(0.,0.,1.),(1.,0.,1.),
+ (0.,1.,0.),(0.,0.,0.),(1.,0.,0.),
+ (0.,0.5,1.),(0.5,0.,1.),(0.5,0.5,1.),
+ (0.,0.5,0.),(0.5,0.,0.),(0.5,0.5,0.),
+ (0.,1.,0.5),(0.,0.,0.5),(1.,0.,0.5),
+ (0.,0.5,0.5),(0.5,0.,0.5),(0.5,0.5,0.5)])
+ m=MEDCouplingUMesh("mesh",3)
+ m.setCoords(arr)
+ m.allocateCells(1)
+ m.insertNextCell(NORM_PENTA18,list(range(18)))
+ m.checkConsistencyLight()
+ #
+ f=MEDCouplingFieldDouble(ON_NODES)
+ f.setMesh(m)
+ f.setName("FieldOnPenta18")
+ f.setArray(DataArrayDouble(list(range(18))))
+ f.checkConsistencyLight()
+ #
+ m2,d,di,rd,rdi=m.buildDescendingConnectivity()
+ #
+ f2=MEDCouplingFieldDouble(ON_NODES)
+ f2.setMesh(m)
+ f2.setName("FieldOnPenta18Sub")
+ f2.setArray(DataArrayDouble(list(range(18))))
+ f2.checkConsistencyLight()
+ WriteField(fname,f2,True)
+ f3=ReadField(fname)
+ self.assertTrue(f2.isEqual(f3,1e-12,1e-12))
+ self.assertEqual(f3.getMesh().getNumberOfCells(),1)
+ self.assertEqual(f3.getMesh().getTypeOfCell(0),NORM_PENTA18)
+ pass
+
+ def testFieldsLinearToQuadratic(self):
+ fname="Pyfile117.med"
+ arr=DataArrayDouble([0,1])
+ m=MEDCouplingCMesh();
+ m.setCoords(arr,arr,arr)
+ m=m.buildUnstructured()
+ m2=m.deepCopy()
+ m2.translate([2,0,0])
+ m3=MEDCouplingUMesh.MergeUMeshes([m,m2])
+ m3.setName("mesh")
+ mm=MEDFileUMesh()
+ mm[0]=m3
+ mmq=mm.linearToQuadratic(0)
+ mms=MEDFileMeshes() ; mms.pushMesh(mm)
+ mmsq=MEDFileMeshes() ; mmsq.pushMesh(mmq)
+ #
+ f=MEDCouplingFieldDouble(ON_NODES)
+ f.setName("field")
+ f.setMesh(m3)
+ f.setTime(3.,1,2)
+ arr=DataArrayDouble(m3.getNumberOfNodes())
+ arr.iota()
+ f.setArray(arr)
+ f1ts=MEDFileField1TS()
+ f1ts.setFieldNoProfileSBT(f)
+ fmts=MEDFileFieldMultiTS()
+ fmts.pushBackTimeStep(f1ts)
+ f1ts_2=f1ts.deepCopy()
+ f1ts_2.setTime(3,4,5.)
+ f1ts_2.getUndergroundDataArray()[:]*=2.
+ fmts.pushBackTimeStep(f1ts_2)
+ fs=MEDFileFields()
+ fs.pushField(fmts)
+ fs2=fs.linearToQuadratic(mms,mmsq)
+ self.myTester1(fs2,mmsq[0])
+ # A small Write/Read and test again
+ mms.write(fname,2) ; fs.write(fname,0)
+ mms=MEDFileMeshes(fname) ; fs=MEDFileFields(fname)
+ mmq=mms[0].linearToQuadratic(0) ; mmqs=MEDFileMeshes() ; mmqs.pushMesh(mmq)
+ fs2=fs.linearToQuadratic(mms,mmqs)
+ self.myTester1(fs2,mmqs[0])
+ pass
+ def myTester1(self,fs2,mmq):
+ dataExp=DataArrayDouble([0.,0.,0.,1.,0.,0.,0.,1.,0.,1.,1.,0.,0.,0.,1.,1.,0.,1.,0.,1.,1.,1.,1.,1.,2.,0.,0.,3.,0.,0.,2.,1.,0.,3.,1.,0.,2.,0.,1.,3.,0.,1.,2.,1.,1.,3.,1.,1.,0.5, 0.,0.,0.,0.5, 0.,0.5, 1.,0.,1.,0.5, 0.,0.5, 0.,1.,0.,0.5, 1.,0.5, 1.,1.,1.,0.5, 1.,1.,0.,0.5, 0.,0.,0.5, 0.,1.,0.5, 1.,1.,0.5, 2.5, 0.,0.,2.,0.5, 0.,2.5, 1.,0.,3.,0.5, 0.,2.5, 0.,1.,2.,0.5, 1.,2.5, 1.,1.,3.,0.5, 1.,3.,0.,0.5, 2.,0.,0.5, 2.,1.,0.5, 3.,1.,0.5],40,3)
+ dataExp1=DataArrayInt([1,0,2,3,5,4,6,7,16,17,18,19,20,21,22,23,24,25,26,27,9,8,10,11,13,12,14,15,28,29,30,31,32,33,34,35,36,37,38,39])
+ dataExp2=DataArrayDouble([0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,0.5,1,2.5,2,4.5,5,6.5,6,3,2,4,5,8.5,9,10.5,10,12.5,13,14.5,14,11,10,12,13])
+ fToTest=fs2[0][0].field(mmq)
+ self.assertEqual(fToTest.getTime(),[3.,1,2])
+ mTest=MEDCoupling1SGTUMesh(fToTest.getMesh())
+ self.assertTrue(mTest.getNodalConnectivity().isEqual(dataExp1))
+ self.assertTrue(mTest.getCoords().isEqual(dataExp,1e-12))
+ self.assertTrue(fToTest.getArray().isEqual(dataExp2,1e-12))
+ # testing 2nd timestep
+ fToTest=fs2[0][1].field(mmq)
+ self.assertEqual(fToTest.getTime(),[5.,3,4])
+ mTest=MEDCoupling1SGTUMesh(fToTest.getMesh())
+ self.assertTrue(mTest.getNodalConnectivity().isEqual(dataExp1))
+ self.assertTrue(mTest.getCoords().isEqual(dataExp,1e-12))
+ self.assertTrue(fToTest.getArray().isEqual(2*dataExp2,1e-12))
+ pass
+
+ def testFieldsLinearToQuadratic2(self):
+ """Same than testFieldsLinearToQuadratic but with profile on NODES"""
+ fname="Pyfile118.med"
+ arr=DataArrayDouble([0,1])
+ m=MEDCouplingCMesh();
+ m.setCoords(arr,arr,arr)
+ m=m.buildUnstructured()
+ m2=m.deepCopy()
+ m2.translate([2,0,0])
+ m3=MEDCouplingUMesh.MergeUMeshes([m,m2])
+ m3.setName("mesh")
+ # add a point for fun
+ m3.setCoords(DataArrayDouble.Aggregate(m3.getCoords(),DataArrayDouble([1.5,1.5,1.5],1,3)))
+ #
+ mm=MEDFileUMesh()
+ mm[0]=m3
+ mmq=mm.linearToQuadratic(0)
+ mms=MEDFileMeshes() ; mms.pushMesh(mm)
+ mmsq=MEDFileMeshes() ; mmsq.pushMesh(mmq)
+ #
+ f=MEDCouplingFieldDouble(ON_NODES)
+ f.setName("field")
+ f.setMesh(m3)
+ f.setTime(3.,1,2)
+ arr=DataArrayDouble(8) ; arr.iota()
+ arr.iota()
+ f.setArray(arr)
+ f1ts=MEDFileField1TS()
+ pfl=DataArrayInt([8,9,10,11,12,13,14,15]) ; pfl.setName("pfl")
+ f1ts.setFieldProfile(f,mm,0,pfl) # f lying on 8 nodes of cell #1
+ f1ts_2=f1ts.deepCopy()
+ f1ts_2.setTime(3,4,5.)
+ f1ts_2.getUndergroundDataArray()[:]*=4.
+ fmts=MEDFileFieldMultiTS()
+ fmts.pushBackTimeStep(f1ts)
+ fmts.pushBackTimeStep(f1ts_2)
+ fs=MEDFileFields()
+ fs.pushField(fmts)
+ fs2=fs.linearToQuadratic(mms,mmsq)
+ mms.write(fname,2) ; fs.write(fname,0)
+ #
+ self.myTester2(fs2,mmq)
+ # Read/write
+ mms=MEDFileMeshes(fname) ; fs=MEDFileFields(fname)
+ mmq=mms[0].linearToQuadratic(0) ; mmqs=MEDFileMeshes() ; mmqs.pushMesh(mmq)
+ fs2=fs.linearToQuadratic(mms,mmqs)
+ self.myTester2(fs2,mmq)
+ ## More vicious add single node 16
+ mm=MEDFileUMesh()
+ mm[0]=m3
+ mmq=mm.linearToQuadratic(0)
+ mms=MEDFileMeshes() ; mms.pushMesh(mm)
+ mmsq=MEDFileMeshes() ; mmsq.pushMesh(mmq)
+ #
+ f=MEDCouplingFieldDouble(ON_NODES)
+ f.setName("field")
+ f.setMesh(m3)
+ f.setTime(3.,1,2)
+ arr=DataArrayDouble(9) ; arr.iota()
+ arr.iota()
+ f.setArray(arr)
+ f1ts=MEDFileField1TS()
+ pfl=DataArrayInt([8,9,10,11,12,13,14,15,16]) ; pfl.setName("pfl")
+ f1ts.setFieldProfile(f,mm,0,pfl) # f lying on 9 nodes of cell #1 + orphan node
+ fmts=MEDFileFieldMultiTS()
+ fmts.pushBackTimeStep(f1ts)
+ fs=MEDFileFields()
+ fs.pushField(fmts)
+ fs2=fs.linearToQuadratic(mms,mmsq)
+ #
+ pflExpected=DataArrayInt([8,9,10,11,12,13,14,15,16,29,30,31,32,33,34,35,36,37,38,39,40]) ; pflExpected.setName("pfl_NODE")
+ f1tsToTest=fs2[0][0]
+ exp1=DataArrayDouble([0,1,2,3,4,5,6,7,8,0.5,1,2.5,2,4.5,5,6.5,6,3,2,4,5])
+ assert(f1tsToTest.getProfile("pfl_NODE").isEqual(pflExpected))
+ assert(f1tsToTest.getUndergroundDataArray().isEqual(exp1,1e-12))
+ assert(f1tsToTest.getFieldSplitedByType()==[(40,[(1,(0,21),'pfl_NODE','')])])
+ pass
+
+ def myTester2(self,fs2,mmq):
+ pflExpected=DataArrayInt([8,9,10,11,12,13,14,15,29,30,31,32,33,34,35,36,37,38,39,40]) ; pflExpected.setName("pfl_NODE")
+ f1tsToTest=fs2[0][0]
+ exp1=DataArrayDouble([0,1,2,3,4,5,6,7,0.5,1,2.5,2,4.5,5,6.5,6,3,2,4,5])
+ self.assertTrue(f1tsToTest.getProfile("pfl_NODE").isEqual(pflExpected))
+ self.assertTrue(f1tsToTest.getUndergroundDataArray().isEqual(exp1,1e-12))
+ self.assertEqual(f1tsToTest.getFieldSplitedByType(),[(NORM_ERROR,[(1,(0,20),'pfl_NODE','')])])
+ fToTest=fs2[0][0].field(mmq)
+ self.assertEqual(fToTest.getTime(),[3.,1,2])
+ mTest=MEDCoupling1SGTUMesh(fToTest.getMesh())
+ self.assertTrue(mTest.getNodalConnectivity().isEqual(DataArrayInt([1,0,2,3,5,4,6,7,8,9,10,11,12,13,14,15,16,17,18,19])))
+ self.assertTrue(mTest.getCoords().isEqual(DataArrayDouble([(2,0,0),(3,0,0),(2,1,0),(3,1,0),(2,0,1),(3,0,1),(2,1,1),(3,1,1),(2.5,0,0),(2,0.5,0),(2.5,1,0),(3,0.5,0),(2.5,0,1),(2,0.5,1),(2.5,1,1),(3,0.5,1),(3,0,0.5),(2,0,0.5),(2,1,0.5),(3,1,0.5)],20,3),1e-12))
+ self.assertTrue(fToTest.getArray().isEqual(exp1,1e-12))
+ # 2nd Time step
+ f1tsToTest=fs2[0][1]
+ self.assertTrue(f1tsToTest.getProfile("pfl_NODE").isEqual(pflExpected))
+ self.assertTrue(f1tsToTest.getUndergroundDataArray().isEqual(4*exp1,1e-12))
+ self.assertEqual(f1tsToTest.getFieldSplitedByType(),[(NORM_ERROR,[(1,(0,20),'pfl_NODE','')])])
+ fToTest=fs2[0][1].field(mmq)
+ self.assertEqual(fToTest.getTime(),[5.,3,4])
+ mTest=MEDCoupling1SGTUMesh(fToTest.getMesh())
+ self.assertTrue(mTest.getNodalConnectivity().isEqual(DataArrayInt([1,0,2,3,5,4,6,7,8,9,10,11,12,13,14,15,16,17,18,19])))
+ self.assertTrue(mTest.getCoords().isEqual(DataArrayDouble([(2,0,0),(3,0,0),(2,1,0),(3,1,0),(2,0,1),(3,0,1),(2,1,1),(3,1,1),(2.5,0,0),(2,0.5,0),(2.5,1,0),(3,0.5,0),(2.5,0,1),(2,0.5,1),(2.5,1,1),(3,0.5,1),(3,0,0.5),(2,0,0.5),(2,1,0.5),(3,1,0.5)],20,3),1e-12))
+ self.assertTrue(fToTest.getArray().isEqual(4*exp1,1e-12))
+
+ pass
+
+ def testSetFieldProfileFlatly1(self):
+ """ Sometimes for downstream code fan of profiles, profile are requested unconditionally. setFieldProfile try to reduce at most profile usage. So setFieldProfileFlatly has been added to always create
+ a profile."""
+ arr=DataArrayDouble(10) ; arr.iota()
+ m=MEDCouplingCMesh() ; m.setCoords(arr,arr)
+ m=m.buildUnstructured()
+ m2=m.deepCopy()
+ m2.simplexize(0)
+ m=MEDCouplingUMesh.MergeUMeshes(m2,m)
+ m.setName("mesh")
+ mm=MEDFileUMesh()
+ mm[0]=m
+ f=MEDCouplingFieldDouble(ON_CELLS)
+ f.setMesh(m)
+ arr=DataArrayDouble(m.getNumberOfCells())
+ arr.iota()
+ f.setArray(arr)
+ f.setName("field")
+ pfl=DataArrayInt(m.getNumberOfCells()) ; pfl.iota() ; pfl.setName("pfl")
+ #
+ refSp=[(3,[(0,(0,162),'','')]),(4,[(0,(162,243),'','')])]
+ refSp1=[(3,[(0,(0,162),'pfl_NORM_TRI3','')]),(4,[(0,(162,243),'pfl_NORM_QUAD4','')])]
+ #
+ f1ts=MEDFileField1TS()
+ f1ts.setFieldProfile(f,mm,0,pfl)
+ self.assertEqual(f1ts.getPfls(),()) # here setFieldProfile has detected useless pfl -> no pfl
+ self.assertEqual(f1ts.getFieldSplitedByType(),refSp)
+ self.assertTrue(f1ts.field(mm).isEqual(f,1e-12,1e-12)) # the essential
+ #
+ f1ts=MEDFileField1TS()
+ f1ts.setFieldProfileFlatly(f,mm,0,pfl) # no optimization attempt. Create pfl unconditionally
+ self.assertEqual(f1ts.getPfls(),("%s_NORM_TRI3"%pfl.getName(),"%s_NORM_QUAD4"%pfl.getName()))
+ self.assertEqual(f1ts.getFieldSplitedByType(),refSp1)
+ self.assertTrue(f1ts.field(mm).isEqual(f,1e-12,1e-12)) # the essential
+ self.assertTrue(f1ts.getProfile("pfl_NORM_TRI3").isIota(162))
+ self.assertTrue(f1ts.getProfile("pfl_NORM_QUAD4").isIota(81))
+ pass
+
+ def testRmGroupAtSpeLevelAndMultiLevGrpCreation(self):
+ """ Here multi level groups are created"""
+ arr=DataArrayDouble(11) ; arr.iota()
+ m=MEDCouplingCMesh() ; m.setCoords(arr,arr)
+ m=m.buildUnstructured()
+ m.setName("mesh")
+ m1=m.buildDescendingConnectivity()[0]
+ mm=MEDFileUMesh()
+ mm[0]=m ; mm[-1]=m1
+ ################
+ grpName="grp0"
+ grp0_0=DataArrayInt([0,1,2,6]) ; grp0_0.setName(grpName)
+ grp0_1=DataArrayInt([0,1,2,7]) ; grp0_1.setName(grpName)
+ grp1=DataArrayInt([1,2,3,5,6]) ; grp1.setName("grp1")
+ grp2=DataArrayInt([2,3,5,8]) ; grp2.setName("grp2")
+ ################ ajouter un groupe sur plusieurs niveau
+ mm.addGroup(0,grp1)
+ mm.addGroup(-1,grp2)
+ mm.addGroup(0,grp0_0)
+ mm.addGroup(-1,grp0_1)
+ self.assertEqual(mm.getGrpNonEmptyLevels(grpName),(0,-1))
+ self.assertTrue(mm.getGroupArr(0,grpName).isEqual(grp0_0))
+ self.assertTrue(mm.getGroupArr(-1,grpName).isEqual(grp0_1))
+ self.assertTrue(mm.getGroupArr(0,"grp1").isEqual(grp1))
+ self.assertTrue(mm.getGroupArr(-1,"grp2").isEqual(grp2))
+ self.assertRaises(InterpKernelException,mm.addGroup,-1,grp0_1) # raise
+ self.assertTrue(mm.getGroupArr(0,grpName).isEqual(grp0_0))
+ self.assertTrue(mm.getGroupArr(-1,grpName).isEqual(grp0_1))
+ self.assertTrue(mm.getGroupArr(0,"grp1").isEqual(grp1))
+ self.assertTrue(mm.getGroupArr(-1,"grp2").isEqual(grp2))
+ mm.removeGroupAtLevel(0,grpName)
+ self.assertEqual(mm.getGrpNonEmptyLevels(grpName),(-1,))
+ self.assertTrue(mm.getGroupArr(-1,grpName).isEqual(grp0_1))
+ self.assertTrue(mm.getGroupArr(0,"grp1").isEqual(grp1))
+ self.assertTrue(mm.getGroupArr(-1,"grp2").isEqual(grp2))
+ mm.removeGroupAtLevel(-1,grpName)
+ self.assertEqual(mm.getGrpNonEmptyLevels(grpName),())
+ self.assertRaises(InterpKernelException,mm.removeGroupAtLevel,-2,grpName)
+ mm.addGroup(-1,grp0_1)
+ mm.addGroup(0,grp0_0)
+ self.assertEqual(mm.getGrpNonEmptyLevels(grpName),(0,-1))
+ self.assertTrue(mm.getGroupArr(0,grpName).isEqual(grp0_0))
+ self.assertTrue(mm.getGroupArr(-1,grpName).isEqual(grp0_1))
+ self.assertTrue(mm.getGroupArr(0,"grp1").isEqual(grp1))
+ self.assertTrue(mm.getGroupArr(-1,"grp2").isEqual(grp2))
+ pass
+
+ def testYutaka(self):
+ """ Thank you to Yutaka Nishizawa for having report this bug. At level -1, adding a first group on all entities leads to a group lying on family 0...
+ Then rearrange method removes unused entites by putting 0 on them -> Previously group has been modified by rearrange. Should not !"""
+ mn="mesh"
+ m=MEDCouplingCMesh()
+ arr=DataArrayDouble(4) ; arr.iota()
+ m.setCoords(arr,arr,arr)
+ m=m.buildUnstructured()
+ m.setName(mn)
+ #
+ m=m.buildUnstructured()
+ m1=m.buildDescendingConnectivity()[0]
+ #
+ mm=MEDFileUMesh()
+ mm[0]=m
+ mm[-1]=m1
+ #
+ grp0=DataArrayInt([0,1,2]) ; grp0.setName("grp0")
+ mm.addGroup(0,grp0)
+ grp1=DataArrayInt([3,4,5,6]) ; grp1.setName("grp1")
+ mm.addGroup(0,grp1)
+ grp2=DataArrayInt([7,8,9]) ; grp2.setName("grp2")
+ mm.addGroup(0,grp2)
+ grp3=DataArrayInt.Range(0,m1.getNumberOfCells(),1) ; grp3.setName("grp3")
+ mm.addGroup(-1,grp3)
+ self.assertNotIn(0,mm.getFamiliesIdsOnGroup("grp3")) # bug was here !
+ grp4=DataArrayInt([3,5,8,10]) ; grp4.setName("grp4")
+ mm.addNodeGroup(grp4)
+ mm.rearrangeFamilies()
+ self.assertEqual(mm.getGrpNonEmptyLevelsExt("grp0"),(0,))
+ self.assertEqual(mm.getGrpNonEmptyLevelsExt("grp1"),(0,))
+ self.assertEqual(mm.getGrpNonEmptyLevelsExt("grp2"),(0,))
+ self.assertEqual(mm.getGrpNonEmptyLevelsExt("grp3"),(-1,))
+ self.assertEqual(mm.getGrpNonEmptyLevelsExt("grp4"),(1,))
+
+ for grp in [grp0,grp1,grp2,grp3,grp4]:
+ self.assertTrue(mm.getGroupArr(mm.getGrpNonEmptyLevelsExt(grp.getName())[0],grp.getName()).isEqual(grp))
+ pass
+ pass
+
+ def tessContxtMger1TS(self):
+ fname="Pyfile119.med"
+ coo=DataArrayDouble(1000) ; coo.iota()
+ m=MEDCouplingUMesh.Build0DMeshFromCoords(coo)
+ m.setName("mesh")
+ WriteMesh(fname,m,True)
+ f=MEDCouplingFieldDouble(ON_CELLS)
+ f.setMesh(m)
+ f.setName("Field")
+ arr=DataArrayDouble(m.getNumberOfCells())
+ f.setArray(arr)
+ f.checkConsistencyLight()
+ for i in range(10):
+ arr[:]=float(i+1)
+ f.setTime(float(i),i,0)
+ WriteFieldUsingAlreadyWrittenMesh(fname,f)
+ pass
+ #
+ mm=MEDFileMesh.New(fname)
+ fmts=MEDFileFieldMultiTS(fname,False)
+ refSize=fmts.getHeapMemorySize()
+ for f1ts in fmts:
+ with f1ts:
+ f=f1ts.field(mm)
+ pass
+ pass
+ self.assertIn(fmts.getHeapMemorySize(),range(refSize,refSize+refSize//10))
+ pass
+
pass
if __name__ == "__main__":
