-// Copyright (C) 2007-2013 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2021 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
-// version 2.1 of the License.
+// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
#include "MEDFileMeshLL.hxx"
#include "MEDFileMesh.hxx"
#include "MEDLoaderBase.hxx"
+#include "MEDFileSafeCaller.txx"
#include "MEDFileMeshReadSelector.hxx"
+#include "MEDFileStructureElement.hxx"
+#include "MEDFileMeshSupport.hxx"
#include "MEDCouplingUMesh.hxx"
#include "CellModel.hxx"
#include <set>
+#include <iomanip>
+// From MEDLOader.cxx TU
extern med_geometry_type typmai[MED_N_CELL_FIXED_GEO];
extern INTERP_KERNEL::NormalizedCellType typmai2[MED_N_CELL_FIXED_GEO];
extern med_geometry_type typmainoeud[1];
-using namespace ParaMEDMEM;
+using namespace MEDCoupling;
-MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
-{
-}
+const char MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS[]="!/__\\!";//important start by - because ord('!')==33 the smallest (!=' ') to preserve orders at most.
-std::size_t MEDFileMeshL2::getHeapMemorySizeWithoutChildren() const
-{
- return 0;
-}
+int MEDFileMeshL2::ZE_SEP2_FOR_FAMILY_KILLERS=4;
-std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildren() const
-{
- return std::vector<const BigMemoryObject *>();
-}
-
-int MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const char *mname, ParaMEDMEM::MEDCouplingMeshType& meshType, int& dt, int& it, std::string& dtunit1)
+std::vector<std::string> MeshCls::getAxisInfoOnMesh(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim, MEDFileString& description, MEDFileString& dtunit, MEDFileString& univName) const
{
med_mesh_type type_maillage;
- char maillage_description[MED_COMMENT_SIZE+1];
- char dtunit[MED_LNAME_SIZE+1];
- med_int spaceDim,dim;
- char nommaa[MED_NAME_SIZE+1];
- med_int n=MEDnMesh(fid);
- bool found=false;
- int ret=-1;
+ med_int spaceDim, meshDim, nbSteps;
med_sorting_type stype;
- std::vector<std::string> ms;
- int nstep;
med_axis_type axistype;
- for(int i=0;i<n && !found;i++)
- {
- int naxis=MEDmeshnAxis(fid,i+1);
- INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- MEDmeshInfo(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit);
- dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
- std::string cur=MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa));
- ms.push_back(cur);
- if(cur==mname)
- {
- found=true;
- ret=i+1;
- }
- }
- if(!found)
- {
- std::ostringstream oss;
- oss << "No such meshname (" << mname << ") in file ! Must be in : ";
- std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
- throw INTERP_KERNEL::Exception(oss.str().c_str());
- }
+ med_int naxis(MEDmeshnAxis(fid,getID()));
+ INTERP_KERNEL::AutoPtr<char> nameTmp(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
+ INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
+ INTERP_KERNEL::AutoPtr<char> axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
+ INTERP_KERNEL::AutoPtr<char> univTmp(MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE));
+ if(MEDmeshInfo(fid,getID(),nameTmp,&spaceDim,&meshDim,&type_maillage,description.getPointer(),dtunit.getPointer(),
+ &stype,&nbSteps,&axistype,axisname,axisunit)!=0)
+ throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
+ Mdim=FromMedInt<int>(meshDim);
+ nstep=FromMedInt<int>(nbSteps);
+ MEDmeshUniversalNameRd(fid,nameTmp,univName.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
+ axType=MEDFileMeshL2::TraduceAxisType(axistype);
switch(type_maillage)
- {
+ {
case MED_UNSTRUCTURED_MESH:
meshType=UNSTRUCTURED;
break;
case MED_STRUCTURED_MESH:
{
med_grid_type gt;
- MEDmeshGridTypeRd(fid,mname,>);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
switch(gt)
- {
+ {
case MED_CARTESIAN_GRID:
meshType=CARTESIAN;
break;
case MED_CURVILINEAR_GRID:
meshType=CURVE_LINEAR;
break;
+ case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
+ meshType=CARTESIAN;
+ break;
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
- }
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ }
break;
}
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
+ }
+ //
+ std::vector<std::string> infosOnComp(naxis);
+ for(int i=0;i<naxis;i++)
+ {
+ std::string info(MEDLoaderBase::buildUnionUnit(((char *)axisname)+i*MED_SNAME_SIZE,MED_SNAME_SIZE,((char *)axisunit)+i*MED_SNAME_SIZE,MED_SNAME_SIZE));
+ infosOnComp[i]=info;
}
- med_int numdt,numit;
- med_float dtt;
- MEDmeshComputationStepInfo(fid,mname,1,&numdt,&numit,&dtt);
- dt=numdt; it=numit;
- return ret;
+ return infosOnComp;
}
-double MEDFileMeshL2::CheckMeshTimeStep(med_idt fid, const char *mName, int nstep, int dt, int it)
+double MeshCls::checkMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it) const
{
bool found=false;
med_int numdt,numit;
- med_float dtt;
+ med_float dtt=0.0;
std::vector< std::pair<int,int> > p(nstep);
for(int i=0;i<nstep;i++)
{
- MEDmeshComputationStepInfo(fid,mName,i+1,&numdt,&numit,&dtt);
- p[i]=std::make_pair<int,int>(numdt,numit);
- found=(numdt==dt) && (numit==numit);
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
+ p[i]=std::make_pair((int)numdt,(int)numit);
+ found=(numdt==dt) && (numit==it);
+ if (found) break;
}
if(!found)
{
return dtt;
}
-std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, int mId, const char *mName, ParaMEDMEM::MEDCouplingMeshType& meshType, int& nstep, int& Mdim)
+std::vector<std::string> StructMeshCls::getAxisInfoOnMesh(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim, MEDFileString& description, MEDFileString& dtunit, MEDFileString& univName) const
+{
+ INTERP_KERNEL::AutoPtr<char> msn(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
+ INTERP_KERNEL::AutoPtr<char> zeDescription(MEDLoaderBase::buildEmptyString(MED_COMMENT_SIZE));
+ med_axis_type medAxType;
+ med_int nAxis(MEDsupportMeshnAxis(fid,getID()));
+ INTERP_KERNEL::AutoPtr<char> axisName(new char[MED_SNAME_SIZE*nAxis+1]),axisUnit(new char[MED_SNAME_SIZE*nAxis+1]);
+ med_int spaceDim(0),meshDim(0);
+ MEDFILESAFECALLERRD0(MEDsupportMeshInfo,(fid,getID(),msn,&spaceDim,&meshDim,zeDescription,&medAxType,axisName,axisUnit));
+ std::string descriptionCpp(MEDLoaderBase::buildStringFromFortran(zeDescription,MED_COMMENT_SIZE));
+ description.set(descriptionCpp.c_str());
+ dtunit.clear(); univName.clear(); meshType=UNSTRUCTURED; nstep=1;
+ axType=MEDFileMeshL2::TraduceAxisType(medAxType);
+ //int nmodels(0);
+ //med_bool chgt=MED_FALSE,trsf=MED_FALSE;
+ //nmodels=MEDmeshnEntity(fid,_name.c_str(),MED_NO_DT,MED_NO_IT,MED_STRUCT_ELEMENT,MED_GEO_ALL,MED_CONNECTIVITY,MED_NODAL,&chgt,&trsf);
+ std::vector<std::string> ret;
+ for(int i=0;i<nAxis;i++)
+ {
+ std::string info(DataArray::BuildInfoFromVarAndUnit(MEDLoaderBase::buildStringFromFortran(axisName+i*MED_SNAME_SIZE,MED_SNAME_SIZE),
+ MEDLoaderBase::buildStringFromFortran(axisUnit+i*MED_SNAME_SIZE,MED_SNAME_SIZE)));
+ ret.push_back(info);
+ }
+ return ret;
+}
+
+double StructMeshCls::checkMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it) const
{
- med_mesh_type type_maillage;
- med_int spaceDim;
+ return 0.;
+}
+
+MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
+{
+}
+
+std::size_t MEDFileMeshL2::getHeapMemorySizeWithoutChildren() const
+{
+ return 0;
+}
+
+std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildrenWithNull() const
+{
+ return std::vector<const BigMemoryObject *>();
+}
+
+INTERP_KERNEL::AutoCppPtr<MeshOrStructMeshCls> MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& dt, int& it, std::string& dtunit1)
+{
+ med_mesh_type type_maillage=MED_UNDEF_MESH_TYPE;
+ char maillage_description[MED_COMMENT_SIZE+1];
+ char dtunit[MED_LNAME_SIZE+1];
+ med_int spaceDim,dim;
+ char nommaa[MED_NAME_SIZE+1];
+ med_int n=MEDnMesh(fid);
+ char found(0);
+ int ret=-1;
med_sorting_type stype;
- med_axis_type axistype;
- int naxis=MEDmeshnAxis(fid,mId);
- INTERP_KERNEL::AutoPtr<char> nameTmp=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
- INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- INTERP_KERNEL::AutoPtr<char> univTmp=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE);
- if(MEDmeshInfo(fid,mId,nameTmp,&spaceDim,&Mdim,&type_maillage,_description.getPointer(),_dt_unit.getPointer(),
- &stype,&nstep,&axistype,axisname,axisunit)!=0)
- throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
- MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());
- switch(type_maillage)
+ std::vector<std::string> ms;
+ med_int nstep;
+ med_axis_type axistype=MED_UNDEF_AXIS_TYPE;
+ for(int i=0;i<n && found==0;i++)
{
- case MED_UNSTRUCTURED_MESH:
- meshType=UNSTRUCTURED;
- break;
- case MED_STRUCTURED_MESH:
+ med_int naxis(MEDmeshnAxis(fid,i+1));
+ INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE)),axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
+ MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
+ dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
+ std::string cur(MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa)));
+ ms.push_back(cur);
+ if(cur==mName)
+ {
+ found=1;
+ ret=i+1;
+ }
+ }
+ if(found==0)
+ {//last chance ! Is it a support mesh ?
+ med_int nbSM(MEDnSupportMesh(fid));
+ for(int i=0;i<nbSM && found==0;i++)
+ {
+ med_int naxis(MEDsupportMeshnAxis(fid,i+1));
+ INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE)),axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
+ MEDFILESAFECALLERRD0(MEDsupportMeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,maillage_description,&axistype,axisname,axisunit));
+ std::string cur(MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa)));
+ ms.push_back(cur);
+ if(cur==mName)
+ {
+ found=2;
+ ret=i+1;
+ }
+ }
+ }
+ ////////////////////////
+ switch(found)
+ {
+ case 1:
{
- med_grid_type gt;
- MEDmeshGridTypeRd(fid,mName,>);
- switch(gt)
+ axType=TraduceAxisType(axistype);
+ switch(type_maillage)
{
- case MED_CARTESIAN_GRID:
- meshType=CARTESIAN;
- break;
- case MED_CURVILINEAR_GRID:
- meshType=CURVE_LINEAR;
+ case MED_UNSTRUCTURED_MESH:
+ meshType=UNSTRUCTURED;
break;
+ case MED_STRUCTURED_MESH:
+ {
+ med_grid_type gt;
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
+ switch(gt)
+ {
+ case MED_CARTESIAN_GRID:
+ meshType=CARTESIAN;
+ break;
+ case MED_CURVILINEAR_GRID:
+ meshType=CURVE_LINEAR;
+ break;
+ case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
+ meshType=CARTESIAN;
+ break;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ }
+ break;
+ }
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
}
- break;
+ med_int numdt,numit;
+ med_float dtt;
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),1,&numdt,&numit,&dtt));
+ dt=FromMedInt<int>(numdt); it=FromMedInt<int>(numit);
+ return new MeshCls(ret);
+ }
+ case 2:
+ {
+ meshType=UNSTRUCTURED;
+ dt=MED_NO_DT; it=MED_NO_IT; dtunit1.clear();
+ axType=TraduceAxisType(axistype);
+ return new StructMeshCls(ret);
}
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
- }
- //
- std::vector<std::string> infosOnComp(naxis);
- for(int i=0;i<naxis;i++)
- {
- std::string info=MEDLoaderBase::buildUnionUnit(((char *)axisname)+i*MED_SNAME_SIZE,MED_SNAME_SIZE,((char *)axisunit)+i*MED_SNAME_SIZE,MED_SNAME_SIZE);
- infosOnComp[i]=info;
+ {
+ std::ostringstream oss;
+ oss << "No such meshname (" << mName << ") in file ! Must be in : ";
+ std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
}
- return infosOnComp;
+
}
-void MEDFileMeshL2::ReadFamiliesAndGrps(med_idt fid, const char *meshName, std::map<std::string,int>& fams, std::map<std::string, std::vector<std::string> >& grps, MEDFileMeshReadSelector *mrs)
+/*!
+ * non static and non const method because _description, _dt_unit... are set in this method.
+ */
+std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim)
+{
+ return mId->getAxisInfoOnMesh(fid,mName,meshType,axType,nstep,Mdim,_description,_dt_unit,_univ_name);
+}
+
+void MEDFileMeshL2::ReadFamiliesAndGrps(med_idt fid, const std::string& meshName, std::map<std::string,mcIdType>& fams, std::map<std::string, std::vector<std::string> >& grps, MEDFileMeshReadSelector *mrs)
{
if(mrs && !(mrs->isCellFamilyFieldReading() || mrs->isNodeFamilyFieldReading()))
return ;
char nomfam[MED_NAME_SIZE+1];
med_int numfam;
- int nfam=MEDnFamily(fid,meshName);
+ med_int nfam=MEDnFamily(fid,meshName.c_str());
+ std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > > crudeFams(nfam);
for(int i=0;i<nfam;i++)
{
- int ngro=MEDnFamilyGroup(fid,meshName,i+1);
- med_int natt=MEDnFamily23Attribute(fid,meshName,i+1);
+ med_int ngro=MEDnFamilyGroup(fid,meshName.c_str(),i+1);
+ med_int natt=MEDnFamily23Attribute(fid,meshName.c_str(),i+1);
INTERP_KERNEL::AutoPtr<med_int> attide=new med_int[natt];
INTERP_KERNEL::AutoPtr<med_int> attval=new med_int[natt];
INTERP_KERNEL::AutoPtr<char> attdes=new char[MED_COMMENT_SIZE*natt+1];
INTERP_KERNEL::AutoPtr<char> gro=new char[MED_LNAME_SIZE*ngro+1];
- MEDfamily23Info(fid,meshName,i+1,nomfam,attide,attval,attdes,&numfam,gro);
- std::string famName=MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE);
- fams[famName]=numfam;
+ MEDfamily23Info(fid,meshName.c_str(),i+1,nomfam,attide,attval,attdes,&numfam,gro);
+ std::string famName(MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE));
+ std::vector<std::string> grps2(ngro);
for(int j=0;j<ngro;j++)
- {
- std::string groupname=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
- grps[groupname].push_back(famName);
- }
+ grps2[j]=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
+ crudeFams[i]=std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > >(famName,std::pair<mcIdType,std::vector<std::string> >(numfam,grps2));
+ }
+ RenameFamiliesFromFileToMemInternal(crudeFams);
+ for(std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > >::const_iterator it0=crudeFams.begin();it0!=crudeFams.end();it0++)
+ {
+ fams[(*it0).first]=(*it0).second.first;
+ for(std::vector<std::string>::const_iterator it1=(*it0).second.second.begin();it1!=(*it0).second.second.end();it1++)
+ grps[*it1].push_back((*it0).first);
}
}
-void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const char *mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
+void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const std::string& mname, const std::map<std::string,mcIdType>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
{
- for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++)
+ std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > > crudeFams(fams.size());
+ std::size_t ii(0);
+ for(std::map<std::string,mcIdType>::const_iterator it=fams.begin();it!=fams.end();it++,ii++)
{
std::vector<std::string> grpsOfFam;
for(std::map<std::string, std::vector<std::string> >::const_iterator it1=grps.begin();it1!=grps.end();it1++)
if(std::find((*it1).second.begin(),(*it1).second.end(),(*it).first)!=(*it1).second.end())
grpsOfFam.push_back((*it1).first);
}
- int ngro=grpsOfFam.size();
+ crudeFams[ii]=std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > >((*it).first,std::pair<mcIdType,std::vector<std::string> >((*it).second,grpsOfFam));
+ }
+ RenameFamiliesFromMemToFileInternal(crudeFams);
+ for(std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++)
+ {
+ std::size_t ngro((*it).second.second.size());
INTERP_KERNEL::AutoPtr<char> groName=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE*ngro);
int i=0;
- for(std::vector<std::string>::const_iterator it2=grpsOfFam.begin();it2!=grpsOfFam.end();it2++,i++)
- MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE-1,groName+i*MED_LNAME_SIZE,tooLongStrPol);
+ for(std::vector<std::string>::const_iterator it2=(*it).second.second.begin();it2!=(*it).second.second.end();it2++,i++)
+ MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE,groName+i*MED_LNAME_SIZE,tooLongStrPol);
INTERP_KERNEL::AutoPtr<char> famName=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
MEDLoaderBase::safeStrCpy((*it).first.c_str(),MED_NAME_SIZE,famName,tooLongStrPol);
- int ret=MEDfamilyCr(fid,mname,famName,(*it).second,ngro,groName);
+ med_int ret=MEDfamilyCr(fid,mname.c_str(),famName,ToMedInt((*it).second.first),ToMedInt(ngro),groName);
ret++;
}
}
+void MEDFileMeshL2::RenameFamiliesPatternInternal(std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > >& crudeFams, RenameFamiliesPatternFunc func)
+{
+ std::size_t ii(0);
+ std::vector<std::string> fams(crudeFams.size());
+ for(std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
+ fams[ii]=(*it).first;
+ if(!func(fams))
+ return ;
+ ii=0;
+ for(std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > >::iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
+ (*it).first=fams[ii];
+}
+
+/*!
+ * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
+ * So this method renames families (if needed generally not !) in order to have a discriminant name for families.
+ */
+void MEDFileMeshL2::RenameFamiliesFromFileToMemInternal(std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > >& crudeFams)
+{
+ RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromFileToMem);
+}
+
+bool MEDFileMeshL2::RenameFamiliesFromFileToMem(std::vector< std::string >& famNames)
+{
+ std::map<std::string,mcIdType> m;
+ std::set<std::string> s;
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ if(s.find(*it)!=s.end())
+ m[*it]=0;
+ s.insert(*it);
+ }
+ if(m.empty())
+ return false;// the general case !
+ for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::map<std::string,mcIdType>::iterator it2(m.find(*it));
+ if(it2!=m.end())
+ {
+ std::ostringstream oss; oss << *it << ZE_SEP_FOR_FAMILY_KILLERS << std::setfill('0') << std::setw(ZE_SEP2_FOR_FAMILY_KILLERS) << (*it2).second++;
+ *it=oss.str();
+ }
+ }
+ return true;
+}
+
+/*!
+ * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
+ * So this method renames families (if needed generally not !) in order to have a discriminant name for families.
+ */
+void MEDFileMeshL2::RenameFamiliesFromMemToFileInternal(std::vector< std::pair<std::string,std::pair<mcIdType,std::vector<std::string> > > >& crudeFams)
+{
+ RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromMemToFile);
+}
+
+bool MEDFileMeshL2::RenameFamiliesFromMemToFile(std::vector< std::string >& famNames)
+{
+ bool isSmthingStrange(false);
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
+ if(found!=std::string::npos)
+ isSmthingStrange=true;
+ }
+ if(!isSmthingStrange)
+ return false;
+ // pattern matching
+ std::map< std::string, std::vector<std::string> > m;
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
+ if(found!=std::string::npos && found>=1)
+ {
+ std::string s1((*it).substr(found+sizeof(ZE_SEP_FOR_FAMILY_KILLERS)-1));
+ if((int)s1.size()!=ZE_SEP2_FOR_FAMILY_KILLERS)
+ continue;
+ int k(-1);
+ std::istringstream iss(s1);
+ iss >> k;
+ bool isOK((iss.rdstate() & ( std::istream::failbit | std::istream::eofbit)) == std::istream::eofbit);
+ if(isOK && k>=0)
+ {
+ std::string s0((*it).substr(0,found));
+ m[s0].push_back(*it);
+ }
+ }
+ }
+ if(m.empty())
+ return false;
+ // filtering
+ std::map<std::string,std::string> zeMap;
+ for(std::map< std::string, std::vector<std::string> >::const_iterator it=m.begin();it!=m.end();it++)
+ {
+ if((*it).second.size()==1)
+ continue;
+ for(std::vector<std::string>::const_iterator it1=(*it).second.begin();it1!=(*it).second.end();it1++)
+ zeMap[*it1]=(*it).first;
+ }
+ if(zeMap.empty())
+ return false;
+ // traduce
+ for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::map<std::string,std::string>::iterator it1(zeMap.find(*it));
+ if(it1!=zeMap.end())
+ *it=(*it1).second;
+ }
+ return true;
+}
+
+MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisType(med_axis_type at)
+{
+ switch(at)
+ {
+ case MED_CARTESIAN:
+ return AX_CART;
+ case MED_CYLINDRICAL:
+ return AX_CYL;
+ case MED_SPHERICAL:
+ return AX_SPHER;
+ case MED_UNDEF_AXIS_TYPE:
+ return AX_CART;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisType : unrecognized axis type !");
+ }
+}
+
+MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisTypeStruct(med_grid_type gt)
+{
+ switch(gt)
+ {
+ case MED_CARTESIAN_GRID:
+ return AX_CART;
+ case MED_POLAR_GRID:
+ return AX_CYL;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeStruct : only Cartesian and Cylindrical supported by MED file !");
+ }
+}
+
+med_axis_type MEDFileMeshL2::TraduceAxisTypeRev(MEDCoupling::MEDCouplingAxisType at)
+{
+ switch(at)
+ {
+ case AX_CART:
+ return MED_CARTESIAN;
+ case AX_CYL:
+ return MED_CYLINDRICAL;
+ case AX_SPHER:
+ return MED_SPHERICAL;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRev : unrecognized axis type !");
+ }
+}
+
+med_grid_type MEDFileMeshL2::TraduceAxisTypeRevStruct(MEDCoupling::MEDCouplingAxisType at)
+{
+ switch(at)
+ {
+ case AX_CART:
+ return MED_CARTESIAN_GRID;
+ case AX_CYL:
+ return MED_POLAR_GRID;
+ case AX_SPHER:
+ return MED_POLAR_GRID;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRevStruct : unrecognized axis type !");
+ }
+}
+
MEDFileUMeshL2::MEDFileUMeshL2()
{
}
-void MEDFileUMeshL2::loadAll(med_idt fid, int mId, const char *mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+std::vector<std::string> MEDFileUMeshL2::loadCommonPart(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it, int& Mdim)
{
- _name.set(mName);
+ Mdim=-3;
+ _name.set(mName.c_str());
int nstep;
- int Mdim;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
+ if(nstep==0)
+ {
+ Mdim=-4;
+ return std::vector<std::string>();
+ }
if(meshType!=UNSTRUCTURED)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected an unstructured one whereas in file it is not an unstructured !");
- _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
+ _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
_iteration=dt;
_order=it;
+ return ret;
+}
+
+void MEDFileUMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ int Mdim;
+ std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
+ if(Mdim==-4)
+ return ;
loadConnectivity(fid,Mdim,mName,dt,it,mrs);//to improve check (dt,it) coherency
- loadCoords(fid,mId,infosOnComp,mName,dt,it);
+ loadCoords(fid,infosOnComp,mName,dt,it);
+}
+
+void MEDFileUMeshL2::loadPart(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<mcIdType>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ int Mdim;
+ std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
+ if(Mdim==-4)
+ return ;
+ loadPartOfConnectivity(fid,Mdim,mName,types,slicPerTyp,dt,it,mrs);
+ med_bool changement,transformation;
+ mcIdType nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
+ std::vector<bool> fetchedNodeIds(nCoords,false);
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
+ if(!mrs || mrs->getNumberOfCoordsLoadSessions()==1)
+ {
+ mcIdType nMin(ToIdType(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true))));
+ mcIdType nMax(ToIdType(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true))));
+ nMax=nCoords-nMax;
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
+ this->loadPartCoords(fid,infosOnComp,mName,dt,it,nMin,nMax);
+ }
+ else
+ {
+ mcIdType nbOfCooLS(mrs->getNumberOfCoordsLoadSessions());
+ MCAuto<DataArrayIdType> fni(DataArrayIdType::BuildListOfSwitchedOn(fetchedNodeIds));
+ MCAuto< MapKeyVal<mcIdType, mcIdType> > o2n(fni->invertArrayN2O2O2NOptimized());
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->renumberNodesInConn(o2n->data());
+ this->loadPartCoordsSlice(fid,infosOnComp,mName,dt,it,fni,nbOfCooLS);
+ }
}
-void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const char *mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
{
_per_type_mesh.resize(1);
_per_type_mesh[0].clear();
for(int j=0;j<MED_N_CELL_FIXED_GEO;j++)
{
- MEDFileUMeshPerType *tmp=MEDFileUMeshPerType::New(fid,mName,dt,it,mdim,typmai[j],typmai2[j],mrs);
+ MEDFileUMeshPerType *tmp(MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs));
if(tmp)
_per_type_mesh[0].push_back(tmp);
}
sortTypes();
}
-void MEDFileUMeshL2::loadCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const char *mName, int dt, int it)
+void MEDFileUMeshL2::loadPartOfConnectivity(med_idt fid, int mdim, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<mcIdType>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ std::size_t nbOfTypes(types.size());
+ if(slicPerTyp.size()!=3*nbOfTypes)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : The size of slicPerTyp array is expected to be equal to 3 times size of array types !");
+ std::set<INTERP_KERNEL::NormalizedCellType> types2(types.begin(),types.end());
+ if(types2.size()!=nbOfTypes)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : the geometric types in types array must appear once !");
+ _per_type_mesh.resize(1);
+ _per_type_mesh[0].clear();
+ for(std::size_t ii=0;ii<nbOfTypes;ii++)
+ {
+ mcIdType strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
+ MCAuto<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
+ _per_type_mesh[0].push_back(tmp);
+ }
+ sortTypes();
+}
+
+void MEDFileUMeshL2::loadCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it)
{
- int spaceDim=infosOnComp.size();
+ int spaceDim((int)infosOnComp.size());
med_bool changement,transformation;
- int nCoords=MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation);
+ med_int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
_coords=DataArrayDouble::New();
_coords->alloc(nCoords,spaceDim);
- double *coordsPtr=_coords->getPointer();
- MEDmeshNodeCoordinateRd(fid,mName,dt,it,MED_FULL_INTERLACE,coordsPtr);
- if(MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ double *coordsPtr(_coords->getPointer());
+ if (nCoords)
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
- _fam_coords=DataArrayInt::New();
- _fam_coords->alloc(nCoords,1);
- MEDmeshEntityFamilyNumberRd(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer());
+ MCAuto<DataArrayMedInt> miFamCoord=DataArrayMedInt::New();
+ miFamCoord->alloc(nCoords,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,miFamCoord->getPointer()));
+ _fam_coords=FromMedIntArray<mcIdType>(miFamCoord);
}
else
_fam_coords=0;
- if(MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
- _num_coords=DataArrayInt::New();
- _num_coords->alloc(nCoords,1);
- MEDmeshEntityNumberRd(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer());
+ MCAuto<DataArrayMedInt> miNumCoord=DataArrayMedInt::New();
+ miNumCoord->alloc(nCoords,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,miNumCoord->getPointer()));
+ _num_coords=FromMedIntArray<mcIdType>(miNumCoord);
}
else
_num_coords=0;
- if(MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
{
_name_coords=DataArrayAsciiChar::New();
_name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- MEDmeshEntityNameRd(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
_name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
}
else
_name_coords=0;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_GLOBAL_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ MCAuto<DataArrayMedInt> miNumCoord=DataArrayMedInt::New();
+ miNumCoord->alloc(nCoords,1);
+ MEDFILESAFECALLERRD0(MEDmeshGlobalNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,miNumCoord->getPointer()));
+ _global_num_coords=FromMedIntArray<mcIdType>(miNumCoord);
+ }
for(int i=0;i<spaceDim;i++)
- _coords->setInfoOnComponent(i,infosOnComp[i].c_str());
+ _coords->setInfoOnComponent(i,infosOnComp[i]);
+}
+
+void MEDFileUMeshL2::LoadPartCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, mcIdType nMin, mcIdType nMax,
+MCAuto<DataArrayDouble>& _coords, MCAuto<PartDefinition>& _part_coords, MCAuto<DataArrayIdType>& _fam_coords, MCAuto<DataArrayIdType>& _num_coords, MCAuto<DataArrayAsciiChar>& _name_coords)
+{
+ med_bool changement,transformation;
+ med_int spaceDim((int)infosOnComp.size()),nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
+ _coords=DataArrayDouble::New();
+ mcIdType nbNodesToLoad(nMax-nMin);
+ _coords->alloc(nbNodesToLoad,spaceDim);
+ med_filter filter=MED_FILTER_INIT,filter2=MED_FILTER_INIT;
+ MEDfilterBlockOfEntityCr(fid,/*nentity*/nCoords,/*nvaluesperentity*/1,/*nconstituentpervalue*/spaceDim,
+ MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
+ /*start*/ToMedInt(nMin+1),/*stride*/1,/*count*/1,/*blocksize*/ToMedInt(nbNodesToLoad),
+ /*lastblocksize=useless because count=1*/0,&filter);
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
+ _part_coords=PartDefinition::New(nMin,nMax,1);
+ MEDfilterClose(&filter);
+ MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
+ MED_NO_PROFILE,ToMedInt(nMin+1),1,1,ToMedInt(nbNodesToLoad),0,&filter2);
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ MCAuto<DataArrayMedInt> miFamCoord=DataArrayMedInt::New();
+ miFamCoord->alloc(nbNodesToLoad,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,miFamCoord->getPointer()));
+ _fam_coords=FromMedIntArray<mcIdType>(miFamCoord);
+ }
+ else
+ _fam_coords=nullptr;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ MCAuto<DataArrayMedInt> miNumCoord=DataArrayMedInt::New();
+ miNumCoord->alloc(nbNodesToLoad,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,miNumCoord->getPointer()));
+ _num_coords=FromMedIntArray<mcIdType>(miNumCoord);
+ }
+ else
+ _num_coords=nullptr;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
+ {
+ _name_coords=DataArrayAsciiChar::New();
+ _name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
+ _name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
+ }
+ else
+ _name_coords=nullptr;
+ MEDfilterClose(&filter2);
+ _coords->setInfoOnComponents(infosOnComp);
+}
+
+/*!
+ * For performance reasons LoadPartCoordsArray method calls LoadPartCoords
+ */
+void MEDFileUMeshL2::LoadPartCoordsArray(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, const DataArrayIdType *nodeIds,
+MCAuto<DataArrayDouble>& _coords, MCAuto<DataArrayIdType>& _fam_coords, MCAuto<DataArrayIdType>& _num_coords, MCAuto<DataArrayAsciiChar>& _name_coords)
+{
+ MCAuto<PartDefinition> useless;
+ nodeIds->checkAllocated();
+ nodeIds->checkNbOfComps(1,"loadPartCoordsSlice : Only one component expected !");
+ mcIdType nMin(0),nMax(0);
+ if(!nodeIds->empty())
+ { nMin = nodeIds->front(); nMax = nodeIds->back()+1; }
+ LoadPartCoords(fid,infosOnComp,mName,dt,it,nMin,nMax,_coords,useless,_fam_coords,_num_coords,_name_coords);
+ if(nodeIds->empty())
+ return ;
+ MCAuto<DataArrayIdType> nodeIds2(nodeIds->deepCopy());
+ nodeIds2->applyLin(1,-nMin);
+ _coords = _coords->selectByTupleIdSafe(nodeIds2->begin(),nodeIds2->end());
+ if(_fam_coords.isNotNull())
+ _fam_coords = _fam_coords->selectByTupleIdSafe(nodeIds2->begin(),nodeIds2->end());
+ if(_num_coords.isNotNull())
+ _num_coords = _num_coords->selectByTupleIdSafe(nodeIds2->begin(),nodeIds2->end());
+ if(_name_coords.isNotNull())
+ {
+ MCAuto<DataArrayChar> tmp(_name_coords->selectByTupleIdSafe(nodeIds2->begin(),nodeIds2->end()));
+ _name_coords = DynamicCastSafe<DataArrayChar,DataArrayAsciiChar>( tmp );
+ }
+}
+
+void MEDFileUMeshL2::loadPartCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, mcIdType nMin, mcIdType nMax)
+{
+ LoadPartCoords(fid,infosOnComp,mName,dt,it,nMin,nMax,_coords,_part_coords,_fam_coords,_num_coords,_name_coords);
+}
+
+void MEDFileUMeshL2::loadPartCoordsSlice(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, const DataArrayIdType *nodeIds, mcIdType nbOfCoordLS)
+{
+ nodeIds->checkAllocated();
+ nodeIds->checkNbOfComps(1,"loadPartCoordsSlice : Only one component expected !");
+ if(nodeIds->empty())
+ return ;
+ if( nbOfCoordLS<1 )
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartCoordsSlice : nb of coords load session must be >=1 !");
+ mcIdType nMin(nodeIds->front()),nMax(nodeIds->back()+1);
+ std::vector< MCAuto<DataArrayDouble> > coords(nbOfCoordLS);
+ std::vector< MCAuto<DataArrayIdType> > famCoords(nbOfCoordLS);
+ std::vector< MCAuto<DataArrayIdType> > numCoords(nbOfCoordLS);
+ std::vector< MCAuto<DataArrayAsciiChar> > nameCoords(nbOfCoordLS);
+ for(mcIdType ipart = 0 ; ipart < nbOfCoordLS ; ++ipart)
+ {
+ mcIdType partStart,partStop;
+ DataArray::GetSlice(nMin,nMax,1,ipart,nbOfCoordLS,partStart,partStop);
+ MCAuto<DataArrayIdType> idsNodeIdsToKeep(nodeIds->findIdsInRange(partStart,partStop));
+ MCAuto<DataArrayIdType> nodeIdsToKeep( nodeIds->selectByTupleIdSafe(idsNodeIdsToKeep->begin(),idsNodeIdsToKeep->end()) );
+ LoadPartCoordsArray(fid,infosOnComp,mName,dt,it,nodeIdsToKeep,coords[ipart],famCoords[ipart],numCoords[ipart],nameCoords[ipart]);
+ }
+ _coords = DataArrayDouble::Aggregate(ToConstVect<DataArrayDouble>(coords));
+ if(famCoords[0].isNotNull())
+ _fam_coords = DataArrayIdType::Aggregate(ToConstVect<DataArrayIdType>(famCoords));
+ if(numCoords[0].isNotNull())
+ _num_coords = DataArrayIdType::Aggregate(ToConstVect<DataArrayIdType>(numCoords));
+ if(nameCoords[0].isNotNull())
+ {
+ std::vector< MCAuto<DataArrayChar> > nameCoords2(nameCoords.begin(),nameCoords.end());
+ std::for_each(nameCoords2.begin(),nameCoords2.end(),[](MCAuto<DataArrayChar>& elt){ elt->incrRef(); });
+ MCAuto<DataArrayChar> tmp( DataArrayChar::Aggregate(ToConstVect<DataArrayChar>(nameCoords2)) );
+ _name_coords = DynamicCastSafe<DataArrayChar,DataArrayAsciiChar>( tmp );
+ }
+ _part_coords = DataArrayPartDefinition::New( const_cast<DataArrayIdType *>(nodeIds) );
}
void MEDFileUMeshL2::sortTypes()
{
std::set<int> mdims;
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
+ std::vector< MCAuto<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
_per_type_mesh.clear();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
mdims.insert((*it)->getDim());
if(mdims.empty())
return;
_per_type_mesh.resize(mdim+1);
for(int dim=mdim+1;dim!=0;dim--)
{
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
+ std::vector< MCAuto<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
if((*it)->getDim()==dim-1)
elt.push_back(*it);
}
// suppression of contiguous empty levels at the end of _per_type_mesh.
int nbOfUselessLev=0;
bool isFirst=true;
- for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
{
if((*it2).empty() && isFirst)
{
_per_type_mesh.resize(_per_type_mesh.size()-nbOfUselessLev);
}
-void MEDFileUMeshL2::WriteCoords(med_idt fid, const char *mname, int dt, int it, double time, const DataArrayDouble *coords, const DataArrayInt *famCoords, const DataArrayInt *numCoords, const DataArrayAsciiChar *nameCoords)
+void MEDFileUMeshL2::WriteCoords(med_idt fid, const std::string& mname, int dt, int it, double time, const DataArrayDouble *coords, const DataArrayIdType *famCoords, const DataArrayIdType *numCoords, const DataArrayAsciiChar *nameCoords, const DataArrayIdType *globalNumCoords)
{
if(!coords)
return ;
- MEDmeshNodeCoordinateWr(fid,mname,dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,ToMedInt(coords->getNumberOfTuples()),coords->begin()));
if(famCoords)
- MEDmeshEntityFamilyNumberWr(fid,mname,dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,ToMedInt(famCoords->getNumberOfTuples()),ToMedIntArray<mcIdType>(famCoords)->begin()));
if(numCoords)
- MEDmeshEntityNumberWr(fid,mname,dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,ToMedInt(numCoords->getNumberOfTuples()),ToMedIntArray<mcIdType>(numCoords)->begin()));
if(nameCoords)
{
if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,mname,dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,ToMedInt(nameCoords->getNumberOfTuples()),nameCoords->begin()));
}
+ if(globalNumCoords)
+ MEDFILESAFECALLERWR0(MEDmeshGlobalNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NONE,ToMedInt(globalNumCoords->getNumberOfTuples()),ToMedIntArray<mcIdType>(globalNumCoords)->begin()));
}
bool MEDFileUMeshL2::isFamDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getFam()==0)
return false;
return true;
bool MEDFileUMeshL2::isNumDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getNum()==0)
return false;
return true;
bool MEDFileUMeshL2::isNamesDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getNames()==0)
return false;
return true;
}
-MEDFileCMeshL2::MEDFileCMeshL2()
+MEDFileCMeshL2::MEDFileCMeshL2():_ax_type(AX_CART)
{
}
-void MEDFileCMeshL2::loadAll(med_idt fid, int mId, const char *mName, int dt, int it)
+void MEDFileCMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it)
{
- _name.set(mName);
+ _name.set(mName.c_str());
int nstep;
int Mdim;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> infosOnComp(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
if(meshType!=CARTESIAN)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
- _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
+ _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
_iteration=dt;
_order=it;
//
med_grid_type gridtype;
- MEDmeshGridTypeRd(fid,mName,&gridtype);
- if(gridtype!=MED_CARTESIAN_GRID)
- throw INTERP_KERNEL::Exception("Invalid structured mesh ! Expected cartesian mesh type !");
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
+ if(gridtype!=MED_CARTESIAN_GRID && gridtype!=MED_POLAR_GRID)
+ throw INTERP_KERNEL::Exception("Invalid rectilinear mesh ! Only cartesian and polar are supported !");
+ _ax_type=TraduceAxisTypeStruct(gridtype);
_cmesh=MEDCouplingCMesh::New();
for(int i=0;i<Mdim;i++)
{
med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbOfElt=MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf);
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
+ med_int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
+ MCAuto<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbOfElt,1);
- da->setInfoOnComponent(0,infosOnComp[i].c_str());
- MEDmeshGridIndexCoordinateRd(fid,mName,dt,it,i+1,da->getPointer());
+ da->setInfoOnComponent(0,infosOnComp[i]);
+ MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
_cmesh->setCoordsAt(i,da);
}
}
med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id)
{
switch(id)
- {
+ {
case 0:
return MED_COORDINATE_AXIS1;
case 1:
return MED_COORDINATE_AXIS3;
default:
throw INTERP_KERNEL::Exception("Invalid meshdim detected in Cartesian Grid !");
- }
+ }
}
MEDFileCLMeshL2::MEDFileCLMeshL2()
{
}
-void MEDFileCLMeshL2::loadAll(med_idt fid, int mId, const char *mName, int dt, int it)
+void MEDFileCLMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it)
{
- _name.set(mName);
+ _name.set(mName.c_str());
int nstep;
int Mdim;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> infosOnComp(getAxisInfoOnMesh(fid,mId,mName,meshType,dummy3,nstep,Mdim));
if(meshType!=CURVE_LINEAR)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
- _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
+ _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
_iteration=dt;
_order=it;
//
_clmesh=MEDCouplingCurveLinearMesh::New();
- INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
- MEDmeshGridStructRd(fid,mName,dt,it,stGrid);
- _clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
+ MCAuto<DataArrayMedInt> miStGrid=DataArrayMedInt::New();
+ miStGrid->alloc(Mdim,1);
+ MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,miStGrid->getPointer()));
+ MCAuto<DataArrayIdType> stGrid=FromMedIntArray<mcIdType>(miStGrid);
+ _clmesh->setNodeGridStructure(stGrid->begin(),stGrid->end());
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbNodes=MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf);
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
+ med_int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
+ MCAuto<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbNodes,infosOnComp.size());
da->setInfoOnComponents(infosOnComp);
- MEDmeshNodeCoordinateRd(fid,mName,dt,it,MED_FULL_INTERLACE,da->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
_clmesh->setCoords(da);
}
if((MEDCouplingUMesh *)_m==0)
{
updateTime();
- _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCpy());
- _m->renumberCells(_st->_num->getConstPointer(),true);
+ _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
+ _m->renumberCells(_st->_num->begin(),true);
return _m.retn();
}
else
else
{
updateTime();
- _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCpy());
- _m->renumberCells(_st->_num->getConstPointer(),true);
+ _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
+ _m->renumberCells(_st->_num->begin(),true);
return _m.retn();
}
}
_num_time=_st->_num->getTimeOfThis();
}
+std::vector<const BigMemoryObject *> MEDFileUMeshPermCompute::getDirectChildrenWithNull() const
+{
+ std::vector<const BigMemoryObject *> ret;
+ ret.push_back((const MEDCouplingUMesh *)_m);
+ return ret;
+}
+
+std::size_t MEDFileUMeshPermCompute::getHeapMemorySizeWithoutChildren() const
+{
+ return sizeof(MEDFileUMeshPermCompute);
+}
+
MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):RefCountObject(other),_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
{
}
-MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const char *mName, int id):_m(this)
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const std::string& mName, int id):_m(this)
{
- const std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& v=l2.getLev(id);
+ const std::vector< MCAuto<MEDFileUMeshPerType> >& v=l2.getLev(id);
if(v.empty())
return;
- int sz=v.size();
+ std::size_t sz=v.size();
std::vector<const MEDCoupling1GTUMesh *> ms(sz);
- std::vector<const DataArrayInt *> fams(sz),nums(sz);
- std::vector<const DataArrayChar *> names(sz);
- for(int i=0;i<sz;i++)
+ std::vector<const DataArrayIdType *> fams(sz),nums(sz);
+ std::vector<const DataArrayChar *> names(sz);
+ std::vector<const PartDefinition *> pds(sz);
+ for(std::size_t i=0;i<sz;i++)
{
MEDCoupling1GTUMesh *elt(v[i]->getMesh());
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=l2.getCoords();
+ MCAuto<DataArrayDouble> tmp2=l2.getCoords();
elt->setCoords(tmp2);
ms[i]=elt;
+ pds[i]=v[i]->getPartDef();
}
_m_by_types.assignParts(ms);
+ _m_by_types.assignDefParts(pds);
if(l2.isFamDefinedOnLev(id))
{
- for(int i=0;i<sz;i++)
+ for(std::size_t i=0;i<sz;i++)
fams[i]=v[i]->getFam();
if(sz!=1)
- _fam=DataArrayInt::Aggregate(fams);
+ _fam=DataArrayIdType::Aggregate(fams);
else
{
fams[0]->incrRef();
- _fam=const_cast<DataArrayInt *>(fams[0]);
+ _fam=const_cast<DataArrayIdType *>(fams[0]);
}
}
if(l2.isNumDefinedOnLev(id))
{
- for(int i=0;i<sz;i++)
+ for(std::size_t i=0;i<sz;i++)
nums[i]=v[i]->getNum();
if(sz!=1)
- _num=DataArrayInt::Aggregate(nums);
+ _num=DataArrayIdType::Aggregate(nums);
else
{
nums[0]->incrRef();
- _num=const_cast<DataArrayInt *>(nums[0]);
+ _num=const_cast<DataArrayIdType *>(nums[0]);
}
computeRevNum();
}
if(l2.isNamesDefinedOnLev(id))
{
- for(int i=0;i<sz;i++)
+ for(std::size_t i=0;i<sz;i++)
names[i]=v[i]->getNames();
_names=dynamic_cast<DataArrayAsciiChar *>(DataArrayChar::Aggregate(names));
}
assignMesh(m,newOrOld);
}
+void MEDFileUMeshSplitL1::setName(const std::string& name)
+{
+ _m_by_types.setName(name);
+}
+
std::size_t MEDFileUMeshSplitL1::getHeapMemorySizeWithoutChildren() const
{
return 0;
}
-std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
ret.push_back(&_m_by_types);
- if((const DataArrayInt*)_fam)
- ret.push_back((const DataArrayInt*)_fam);
- if((const DataArrayInt*)_num)
- ret.push_back((const DataArrayInt*)_num);
- if((const DataArrayInt*)_rev_num)
- ret.push_back((const DataArrayInt*)_rev_num);
- if((const DataArrayAsciiChar*)_names)
- ret.push_back((const DataArrayAsciiChar*)_names);
+ ret.push_back(&_m);
+ ret.push_back((const DataArrayIdType*)_fam);
+ ret.push_back((const DataArrayIdType*)_num);
+ ret.push_back((const DataArrayIdType*)_rev_num);
+ ret.push_back((const DataArrayAsciiChar*)_names);
return ret;
}
-MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCpy(DataArrayDouble *coords) const
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::shallowCpyUsingCoords(DataArrayDouble *coords) const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret=new MEDFileUMeshSplitL1(*this);
- ret->_m_by_types=_m_by_types.deepCpy(coords);
- if((const DataArrayInt *)_fam)
- ret->_fam=_fam->deepCpy();
- if((const DataArrayInt *)_num)
- ret->_num=_num->deepCpy();
- if((const DataArrayInt *)_rev_num)
- ret->_rev_num=_rev_num->deepCpy();
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
+ ret->_m_by_types.shallowCpyMeshes();
+ ret->_m_by_types.setCoords(coords);
+ return ret.retn();
+}
+
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCopy(DataArrayDouble *coords) const
+{
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
+ ret->_m_by_types=_m_by_types.deepCopy(coords);
+ if((const DataArrayIdType *)_fam)
+ ret->_fam=_fam->deepCopy();
+ if((const DataArrayIdType *)_num)
+ ret->_num=_num->deepCopy();
+ if((const DataArrayIdType *)_rev_num)
+ ret->_rev_num=_rev_num->deepCopy();
if((const DataArrayAsciiChar *)_names)
- ret->_names=_names->deepCpy();
+ ret->_names=_names->deepCopy();
return ret.retn();
}
+void MEDFileUMeshSplitL1::checkConsistency() const
+{
+ if (!_fam || _fam->getNumberOfTuples() != getSize())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): internal family array has an invalid size!");
+ mcIdType nbCells = getSize();
+ if (_num)
+ {
+ _num->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array!");
+ mcIdType pos;
+ mcIdType maxValue=_num->getMaxValue(pos);
+ if (!_rev_num || _rev_num->getNumberOfTuples() != (maxValue+1))
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal revert node numbering array!");
+ }
+ if ((_num && !_rev_num) || (!_num && _rev_num))
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal numbering arrays (one is null)!");
+ if (_num && !_num->hasUniqueValues())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array: duplicates found!");
+ if (_names)
+ _names->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): internal cell naming array has an invalid size!");
+
+ _m_by_types.checkConsistency();
+}
+
bool MEDFileUMeshSplitL1::isEqual(const MEDFileUMeshSplitL1 *other, double eps, std::string& what) const
{
if(!_m_by_types.isEqual(other->_m_by_types,eps,what))
return false;
- const DataArrayInt *d1=_fam;
- const DataArrayInt *d2=other->_fam;
+ const DataArrayIdType *d1=_fam;
+ const DataArrayIdType *d2=other->_fam;
if((d1==0 && d2!=0) || (d1!=0 && d2==0))
{
what="Presence of family arr in one sublevel and not in other!";
{
m->incrRef();
_m=m;
- _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCpy()));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
- if(!da->isIdentity())
+ _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCopy()));
+ MCAuto<DataArrayIdType> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
+ if(!da->isIota(m->getNumberOfCells()))
{
_num=da->invertArrayO2N2N2O(m->getNumberOfCells());
_m.updateTime();
computeRevNum();
- _m_by_types.getUmesh()->renumberCells(da->getConstPointer(),false);
+ _m_by_types.getUmesh()->renumberCells(da->begin(),false);
}
}
else
{
if(!m->checkConsecutiveCellTypesAndOrder(typmai2,typmai2+MED_N_CELL_FIXED_GEO))
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh : the mode of mesh setting expects to follow the MED file numbering convention ! it is not the case !");
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh(): the mesh does not follow the MED file numbering convention! Invoke sortCellsInMEDFileFrmt() first!");
m->incrRef();
_m_by_types.assignUMesh(m);
}
assignCommonPart();
}
+void MEDFileUMeshSplitL1::forceComputationOfParts() const
+{
+ _m_by_types.forceComputationOfPartsFromUMesh();
+}
+
void MEDFileUMeshSplitL1::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
{
_m_by_types.assignParts(mParts);
assignCommonPart();
}
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
+{
+}
+
void MEDFileUMeshSplitL1::assignCommonPart()
{
- _fam=DataArrayInt::New();
+ _fam=DataArrayIdType::New();
_fam->alloc(_m_by_types.getSize(),1);
_fam->fillWithValue(0);
}
return _m_by_types.empty();
}
-bool MEDFileUMeshSplitL1::presenceOfOneFams(const std::vector<int>& ids) const
+bool MEDFileUMeshSplitL1::presenceOfOneFams(const std::vector<mcIdType>& ids) const
{
- const DataArrayInt *fam=_fam;
+ const DataArrayIdType *fam=_fam;
if(!fam)
return false;
return fam->presenceOfValue(ids);
void MEDFileUMeshSplitL1::simpleRepr(std::ostream& oss) const
{
- std::vector<int> code=_m_by_types.getDistributionOfTypes();
- int nbOfTypes=code.size()/3;
- for(int i=0;i<nbOfTypes;i++)
+ std::vector<mcIdType> code=_m_by_types.getDistributionOfTypes();
+ std::size_t nbOfTypes=code.size()/3;
+ for(std::size_t i=0;i<nbOfTypes;i++)
{
INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType) code[3*i];
oss << " - Number of cells with type " << INTERP_KERNEL::CellModel::GetCellModel(typ).getRepr() << " : " << code[3*i+1] << std::endl;
}
}
-int MEDFileUMeshSplitL1::getSize() const
+mcIdType MEDFileUMeshSplitL1::getSize() const
{
return _m_by_types.getSize();
}
-MEDCouplingUMesh *MEDFileUMeshSplitL1::getFamilyPart(const int *idsBg, const int *idsEnd, bool renum) const
+MEDCouplingUMesh *MEDFileUMeshSplitL1::getFamilyPart(const mcIdType *idsBg, const mcIdType *idsEnd, bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> eltsToKeep=_fam->getIdsEqualList(idsBg,idsEnd);
- MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types.getUmesh()->buildPartOfMySelf(eltsToKeep->getConstPointer(),eltsToKeep->getConstPointer()+eltsToKeep->getNumberOfTuples(),true);
+ MCAuto<DataArrayIdType> eltsToKeep=_fam->findIdsEqualList(idsBg,idsEnd);
+ MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types.getUmesh()->buildPartOfMySelf(eltsToKeep->begin(),eltsToKeep->end(),true);
if(renum)
- return renumIfNeeded(m,eltsToKeep->getConstPointer());
+ return renumIfNeeded(m,eltsToKeep->begin());
return m;
}
-DataArrayInt *MEDFileUMeshSplitL1::getFamilyPartArr(const int *idsBg, const int *idsEnd, bool renum) const
+DataArrayIdType *MEDFileUMeshSplitL1::getFamilyPartArr(const mcIdType *idsBg, const mcIdType *idsEnd, bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_fam->getIdsEqualList(idsBg,idsEnd);
+ MCAuto<DataArrayIdType> da=_fam->findIdsEqualList(idsBg,idsEnd);
if(renum)
return renumIfNeededArr(da);
return da.retn();
return _m_by_types.getGeoTypes();
}
+mcIdType MEDFileUMeshSplitL1::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ return _m_by_types.getNumberOfCellsWithType(ct);
+}
+
MEDCouplingUMesh *MEDFileUMeshSplitL1::getWholeMesh(bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp;
- if(renum && ((const DataArrayInt *)_num))
+ MCAuto<MEDCouplingUMesh> tmp;
+ if(renum && ((const DataArrayIdType *)_num))
tmp=_m;
else
{ tmp=_m_by_types.getUmesh(); if(tmp) tmp->incrRef(); }
return tmp.retn();
}
-DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
+mcIdType MEDFileUMeshSplitL1::getNumberOfCells() const
+{
+ return _m_by_types.getNumberOfCells();
+}
+
+DataArrayIdType *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
{
- const DataArrayInt *fam(_fam);
+ const DataArrayIdType *fam(_fam);
if(!fam)
return 0;
- int start(0),stop(0);
+ mcIdType start(0),stop(0);
_m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
- return fam->selectByTupleId2(start,stop,1);
+ return fam->selectByTupleIdSafeSlice(start,stop,1);
}
-DataArrayInt *MEDFileUMeshSplitL1::extractNumberFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
+DataArrayIdType *MEDFileUMeshSplitL1::extractNumberFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
{
- const DataArrayInt *num(_num);
+ const DataArrayIdType *num(_num);
if(!num)
return 0;
- int start(0),stop(0);
+ mcIdType start(0),stop(0);
_m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
- return num->selectByTupleId2(start,stop,1);
+ return num->selectByTupleIdSafeSlice(start,stop,1);
}
-DataArrayInt *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField()
+DataArrayIdType *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField()
{
- if((DataArrayInt *)_fam)
+ if((DataArrayIdType *)_fam)
return _fam;
- int nbOfTuples=_m_by_types.getSize();
- _fam=DataArrayInt::New(); _fam->alloc(nbOfTuples,1); _fam->fillWithZero();
+ mcIdType nbOfTuples=_m_by_types.getSize();
+ _fam=DataArrayIdType::New(); _fam->alloc(nbOfTuples,1); _fam->fillWithZero();
return _fam;
}
-const DataArrayInt *MEDFileUMeshSplitL1::getFamilyField() const
+const DataArrayIdType *MEDFileUMeshSplitL1::getFamilyField() const
{
return _fam;
}
-const DataArrayInt *MEDFileUMeshSplitL1::getNumberField() const
+const DataArrayIdType *MEDFileUMeshSplitL1::getNumberField() const
{
return _num;
}
-const DataArrayInt *MEDFileUMeshSplitL1::getRevNumberField() const
+const DataArrayIdType *MEDFileUMeshSplitL1::getRevNumberField() const
{
return _rev_num;
}
return _names;
}
+const PartDefinition *MEDFileUMeshSplitL1::getPartDef(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ return _m_by_types.getPartDefOfWithoutComputation(gt);
+}
+
void MEDFileUMeshSplitL1::eraseFamilyField()
{
_fam->fillWithZero();
/*!
* This method ignores _m and _m_by_types.
*/
-void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,int>& familyIds,
- std::map<std::string, std::vector<std::string> >& groups) throw(INTERP_KERNEL::Exception)
+void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,mcIdType>& familyIds,
+ std::map<std::string, std::vector<std::string> >& groups)
{
- std::vector< DataArrayInt * > corr;
+ std::vector< DataArrayIdType * > corr;
_m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
- std::vector< std::vector<int> > fidsOfGroups;
- std::vector< const DataArrayInt * > corr2(corr.begin(),corr.end());
- _fam=DataArrayInt::MakePartition(corr2,((MEDCouplingUMesh *)_m)->getNumberOfCells(),fidsOfGroups);
- int nbOfCells=((MEDCouplingUMesh *)_m)->getNumberOfCells();
- std::map<int,std::string> newfams;
- std::map<int,int> famIdTrad;
+ std::vector< MCAuto<DataArrayIdType> > corrMSafe(corr.begin(),corr.end());
+ std::vector< std::vector<mcIdType> > fidsOfGroups;
+ std::vector< const DataArrayIdType * > corr2(corr.begin(),corr.end());
+ _fam=DataArrayIdType::MakePartition(corr2,((MEDCouplingUMesh *)_m)->getNumberOfCells(),fidsOfGroups);
+ mcIdType nbOfCells=((MEDCouplingUMesh *)_m)->getNumberOfCells();
+ std::map<mcIdType,std::string> newfams;
+ std::map<mcIdType,mcIdType> famIdTrad;
TraduceFamilyNumber(fidsOfGroups,familyIds,famIdTrad,newfams);
- int *w=_fam->getPointer();
- for(int i=0;i<nbOfCells;i++,w++)
+ mcIdType *w=_fam->getPointer();
+ for(mcIdType i=0;i<nbOfCells;i++,w++)
*w=famIdTrad[*w];
}
-void MEDFileUMeshSplitL1::write(med_idt fid, const char *mName, int mdim) const
+void MEDFileUMeshSplitL1::write(med_idt fid, const std::string& mName, int mdim) const
{
std::vector<MEDCoupling1GTUMesh *> ms(_m_by_types.getParts());
- int start=0;
+ mcIdType start=0;
for(std::vector<MEDCoupling1GTUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
{
- int nbCells=(*it)->getNumberOfCells();
- int end=start+nbCells;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> fam,num;
- MEDCouplingAutoRefCountObjectPtr<DataArrayAsciiChar> names;
- if((const DataArrayInt *)_fam)
- fam=_fam->substr(start,end);
- if((const DataArrayInt *)_num)
- num=_num->substr(start,end);
+ mcIdType nbCells=(*it)->getNumberOfCells();
+ mcIdType end=start+nbCells;
+ MCAuto<DataArrayIdType> fam,num;
+ MCAuto<DataArrayAsciiChar> names;
+ if((const DataArrayIdType *)_fam)
+ fam=_fam->subArray(start,end);
+ if((const DataArrayIdType *)_num)
+ num=_num->subArray(start,end);
if((const DataArrayAsciiChar *)_names)
- names=static_cast<DataArrayAsciiChar *>(_names->substr(start,end));
+ names=static_cast<DataArrayAsciiChar *>(_names->subArray(start,end));
MEDFileUMeshPerType::Write(fid,mName,mdim,(*it),fam,num,names);
start=end;
}
}
-void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N)
+void MEDFileUMeshSplitL1::renumberNodesInConn(const mcIdType *newNodeNumbersO2N)
{
- MEDCouplingUMesh *m(_m_by_types.getUmesh());
- if(!m)
- return;
- m->renumberNodesInConn(newNodeNumbersO2N);
+ _m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
+}
+
+void MEDFileUMeshSplitL1::serialize(std::vector<mcIdType>& tinyInt, std::vector< MCAuto<DataArrayIdType> >& bigArraysI) const
+{
+ bigArraysI.push_back(_fam);
+ bigArraysI.push_back(_num);
+ _m_by_types.serialize(tinyInt,bigArraysI);
}
-void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
+void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<mcIdType>& tinyInt, std::vector< MCAuto<DataArrayIdType> >& bigArraysI)
{
- DataArrayInt *arr=_fam;
+ _fam=bigArraysI.back(); bigArraysI.pop_back();
+ _num=bigArraysI.back(); bigArraysI.pop_back();
+ _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
+}
+
+void MEDFileUMeshSplitL1::changeFamilyIdArr(mcIdType oldId, mcIdType newId)
+{
+ DataArrayIdType *arr=_fam;
if(arr)
arr->changeValue(oldId,newId);
}
-void MEDFileUMeshSplitL1::setFamilyArr(DataArrayInt *famArr)
+void MEDFileUMeshSplitL1::setFamilyArr(DataArrayIdType *famArr)
{
if(!famArr)
{
_fam=0;
return ;
}
- int sz(_m_by_types.getSize());
+ mcIdType sz(_m_by_types.getSize());
famArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setFamilyArr : Problem in size of Family arr ! ");
famArr->incrRef();
_fam=famArr;
}
-void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
+DataArrayIdType *MEDFileUMeshSplitL1::getFamilyField()
+{
+ return _fam;
+}
+
+void MEDFileUMeshSplitL1::setRenumArr(DataArrayIdType *renumArr)
{
if(!renumArr)
{
_rev_num=0;
return ;
}
- int sz(_m_by_types.getSize());
+ mcIdType sz(_m_by_types.getSize());
renumArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setRenumArr : Problem in size of numbering arr ! ");
renumArr->incrRef();
_num=renumArr;
_names=0;
return ;
}
- int sz(_m_by_types.getSize());
+ mcIdType sz(_m_by_types.getSize());
nameArr->checkNbOfTuplesAndComp(sz,MED_SNAME_SIZE,"MEDFileUMeshSplitL1::setNameArr : Problem in size of name arr ! ");
nameArr->incrRef();
_names=nameArr;
}
-MEDCouplingUMesh *MEDFileUMeshSplitL1::Renumber2(const DataArrayInt *renum, MEDCouplingUMesh *m, const int *cellIds)
+MEDCouplingUMesh *MEDFileUMeshSplitL1::Renumber2(const DataArrayIdType *renum, MEDCouplingUMesh *m, const mcIdType *cellIds)
{
if(renum==0)
return m;
if(cellIds==0)
- m->renumberCells(renum->getConstPointer(),true);
+ m->renumberCells(renum->begin(),true);
else
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
- m->renumberCells(locnum->getConstPointer(),true);
+ MCAuto<DataArrayIdType> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
+ m->renumberCells(locnum->begin(),true);
}
return m;
}
-MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<mcIdType>& tinyInt, std::vector< MCAuto<DataArrayIdType> >& bigArraysI)
+{
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
+ ret->unserialize(name,coo,tinyInt,bigArraysI);
+ return ret.retn();
+}
+
+MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const mcIdType *cellIds) const
{
return Renumber2(_num,m,cellIds);
}
-DataArrayInt *MEDFileUMeshSplitL1::Renumber(const DataArrayInt *renum, const DataArrayInt *da)
+DataArrayIdType *MEDFileUMeshSplitL1::Renumber(const DataArrayIdType *renum, const DataArrayIdType *da)
{
- if((const DataArrayInt *)renum==0)
+ if((const DataArrayIdType *)renum==0)
{
da->incrRef();
- return const_cast<DataArrayInt *>(da);
+ return const_cast<DataArrayIdType *>(da);
}
- return renum->selectByTupleId(da->getConstPointer(),da->getConstPointer()+da->getNumberOfTuples());
+ return renum->selectByTupleId(da->begin(),da->end());
}
-DataArrayInt *MEDFileUMeshSplitL1::renumIfNeededArr(const DataArrayInt *da) const
+DataArrayIdType *MEDFileUMeshSplitL1::renumIfNeededArr(const DataArrayIdType *da) const
{
return Renumber(_num,da);
}
-std::vector<int> MEDFileUMeshSplitL1::GetNewFamiliesNumber(int nb, const std::map<std::string,int>& families)
+std::vector<mcIdType> MEDFileUMeshSplitL1::GetNewFamiliesNumber(mcIdType nb, const std::map<std::string,mcIdType>& families)
{
- int id=-1;
- for(std::map<std::string,int>::const_iterator it=families.begin();it!=families.end();it++)
+ mcIdType id=-1;
+ for(std::map<std::string,mcIdType>::const_iterator it=families.begin();it!=families.end();it++)
id=std::max(id,(*it).second);
if(id==-1)
id=0;
- std::vector<int> ret(nb);
- for(int i=1;i<=nb;i++)
+ std::vector<mcIdType> ret(nb);
+ for(mcIdType i=1;i<=nb;i++)
ret[i]=id+i;
return ret;
}
-void MEDFileUMeshSplitL1::TraduceFamilyNumber(const std::vector< std::vector<int> >& fidsGrps, std::map<std::string,int>& familyIds,
- std::map<int,int>& famIdTrad, std::map<int,std::string>& newfams)
+void MEDFileUMeshSplitL1::TraduceFamilyNumber(const std::vector< std::vector<mcIdType> >& fidsGrps, std::map<std::string,mcIdType>& familyIds,
+ std::map<mcIdType,mcIdType>& famIdTrad, std::map<mcIdType,std::string>& newfams)
{
- std::set<int> allfids;
+ std::set<mcIdType> allfids;
//tony
}
void MEDFileUMeshSplitL1::computeRevNum() const
{
- int pos;
- int maxValue=_num->getMaxValue(pos);
- _rev_num=_num->invertArrayN2O2O2N(maxValue+1);
+ mcIdType pos;
+ if(!_num->empty())
+ {
+ mcIdType maxValue=_num->getMaxValue(pos);
+ _rev_num=_num->invertArrayN2O2O2N(maxValue+1);
+ }
+ else
+ {
+ _rev_num = DataArrayIdType::New();
+ _rev_num->alloc(0,1);
+ }
+
}
//=
{
}
+void MEDFileUMeshAggregateCompute::setName(const std::string& name)
+{
+ if(_m_time>=_mp_time)
+ {
+ MEDCouplingUMesh *um(_m);
+ if(um)
+ um->setName(name);
+ }
+ if(_mp_time>=_m_time)
+ {
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ MEDCoupling1GTUMesh *tmp(*it);
+ if(tmp)
+ tmp->setName(name);
+ }
+ }
+}
+
void MEDFileUMeshAggregateCompute::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
{
std::size_t sz(mParts.size());
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> > ret(sz);
+ std::vector< MCAuto<MEDCoupling1GTUMesh> > ret(sz);
for(std::size_t i=0;i<sz;i++)
{
const MEDCoupling1GTUMesh *elt(mParts[i]);
ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt); elt->incrRef();
}
_m_parts=ret;
+ _part_def.clear(); _part_def.resize(sz);
_mp_time=std::max(_mp_time,_m_time)+1;
_m=0;
}
+void MEDFileUMeshAggregateCompute::assignDefParts(const std::vector<const PartDefinition *>& partDefs)
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : the parts require a computation !");
+ std::size_t sz(partDefs.size());
+ if(_part_def.size()!=partDefs.size() || _part_def.size()!=_m_parts.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : sizes of vectors of part definition mismatch !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(partDefs[i]);
+ if(elt)
+ elt->incrRef();
+ _part_def[i]=const_cast<PartDefinition*>(elt);
+ }
+}
+
void MEDFileUMeshAggregateCompute::assignUMesh(MEDCouplingUMesh *m)
{
_m=m;
return _m;
}
+mcIdType MEDFileUMeshAggregateCompute::getNumberOfCells() const
+{
+ if(_mp_time<=_m_time)
+ return _m->getNumberOfCells();
+ mcIdType ret(0);
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ ret+=(*it)->getNumberOfCells();
+ return ret;
+}
+
std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
{
if(_mp_time>=_m_time)
return _m->getAllGeoTypesSorted();
}
-std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::getPartsWithoutComputation() const
+mcIdType MEDFileUMeshAggregateCompute::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ if(_mp_time>=_m_time)
+ {
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(elt && elt->getCellModelEnum()==ct)
+ return elt->getNumberOfCells();
+ }
+ return 0;
+ }
+ else
+ return _m->getNumberOfCellsWithType(ct);
+}
+
+std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
{
if(_mp_time<_m_time)
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartsWithoutComputation : the parts require a computation !");
//
std::vector<MEDCoupling1GTUMesh *> ret(_m_parts.size());
std::size_t i(0);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
{
const MEDCoupling1GTUMesh *elt(*it);
ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt);
{
if(_mp_time<_m_time)
forceComputationOfPartsFromUMesh();
- return getPartsWithoutComputation();
+ return retrievePartsWithoutComputation();
}
-MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::getPartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+void MEDFileUMeshAggregateCompute::highlightUsedNodes(std::vector<bool>& nodesToBeHighlighted) const
{
- std::vector<MEDCoupling1GTUMesh *> v(getPartsWithoutComputation());
+ if(_mp_time<_m_time)
+ forceComputationOfPartsFromUMesh();
+ for(auto part : this->_m_parts)
+ {
+ part->computeNodeIdsAlg(nodesToBeHighlighted);
+ }
+}
+
+MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::retrievePartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
std::size_t sz(v.size());
for(std::size_t i=0;i<sz;i++)
{
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartWithoutComputation : the geometric type is not existing !");
}
-void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, int& start, int& stop) const
+void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, mcIdType& start, mcIdType& stop) const
{
start=0; stop=0;
- std::vector<MEDCoupling1GTUMesh *> v(getPartsWithoutComputation());
+ std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
std::size_t sz(v.size());
for(std::size_t i=0;i<sz;i++)
{
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation : the geometric type is not existing !");
}
+void MEDFileUMeshAggregateCompute::renumberNodesInConnWithoutComputation(const mcIdType *newNodeNumbersO2N)
+{
+ if(_mp_time>_m_time)
+ {
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ MEDCoupling1GTUMesh *m(*it);
+ if(m)
+ m->renumberNodesInConn(newNodeNumbersO2N);
+ }
+ }
+ else
+ {
+ MEDCouplingUMesh *m(getUmesh());
+ if(!m)
+ return;
+ m->renumberNodesInConn(newNodeNumbersO2N);
+ // if _mp_time == _m_time notify for future clients that _m_parts is obsolete
+ _m_parts.clear();
+ _m_time = std::max(_m_time,_mp_time+1);
+ }
+}
+
void MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh() const
{
const MEDCouplingUMesh *m(_m);
if(!m)
- throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ {
+ if(_m_parts.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ else
+ return ;// no needs to compte parts they are already here !
+ }
std::vector<MEDCouplingUMesh *> ms(m->splitByType());
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
+ std::vector< MCAuto<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
std::size_t sz(msMSafe.size());
_m_parts.resize(sz);
for(std::size_t i=0;i<sz;i++)
_m_parts[i]=MEDCoupling1GTUMesh::New(ms[i]);
- _mp_time=std::max(_mp_time,_m_time)+1;
+ _part_def.clear();
+ _part_def.resize(_m_parts.size());
+ _mp_time=std::max(_mp_time,_m_time);
+}
+
+const PartDefinition *MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : the parts require a computation !");
+ if(_m_parts.size()!=_part_def.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : size of arrays are expected to be the same !");
+ std::size_t sz(_m_parts.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(mesh)
+ if(mesh->getCellModelEnum()==gt)
+ return _part_def[i];
+ }
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
+}
+
+void MEDFileUMeshAggregateCompute::serialize(std::vector<mcIdType>& tinyInt, std::vector< MCAuto<DataArrayIdType> >& bigArraysI) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
+ std::size_t sz(_m_parts.size());
+ tinyInt.push_back((mcIdType)sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
+ tinyInt.push_back(mesh->getCellModelEnum());
+ const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
+ const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
+ if(mesh1)
+ {
+ DataArrayIdType *elt(mesh1->getNodalConnectivity());
+ if(elt)
+ elt->incrRef();
+ MCAuto<DataArrayIdType> elt1(elt);
+ bigArraysI.push_back(elt1);
+ }
+ else if(mesh2)
+ {
+ DataArrayIdType *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
+ if(elt1)
+ elt1->incrRef();
+ if(elt2)
+ elt2->incrRef();
+ MCAuto<DataArrayIdType> elt11(elt1),elt22(elt2);
+ bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
+ const PartDefinition *pd(_part_def[i]);
+ if(!pd)
+ tinyInt.push_back(-1);
+ else
+ {
+ std::vector<mcIdType> tinyTmp;
+ pd->serialize(tinyTmp,bigArraysI);
+ tinyInt.push_back((mcIdType)tinyTmp.size());
+ tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
+ }
+ }
+}
+
+void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<mcIdType>& tinyInt, std::vector< MCAuto<DataArrayIdType> >& bigArraysI)
+{
+ mcIdType nbParts(tinyInt.back()); tinyInt.pop_back();
+ _part_def.clear(); _part_def.resize(nbParts);
+ _m_parts.clear(); _m_parts.resize(nbParts);
+ for(mcIdType i=0;i<nbParts;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
+ MCAuto<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
+ mesh->setCoords(coo);
+ MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ if(mesh1)
+ {
+ mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
+ }
+ else if(mesh2)
+ {
+ MCAuto<DataArrayIdType> elt0,elt1;
+ elt0=bigArraysI.back(); bigArraysI.pop_back();
+ elt1=bigArraysI.back(); bigArraysI.pop_back();
+ mesh2->setNodalConnectivity(elt0,elt1);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
+ _m_parts[i]=mesh;
+ mcIdType pdid(tinyInt.back()); tinyInt.pop_back();
+ if(pdid!=-1)
+ _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
+ _mp_time=std::max(_mp_time,_m_time)+1;
+ }
+}
+
+/*!
+ * This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
+ */
+bool MEDFileUMeshAggregateCompute::isStoredSplitByType() const
+{
+ return _mp_time>=_m_time;
}
std::size_t MEDFileUMeshAggregateCompute::getTimeOfThis() const
std::size_t MEDFileUMeshAggregateCompute::getTimeOfParts() const
{
std::size_t ret(0);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
const MEDCoupling1GTUMesh *elt(*it);
if(!elt)
std::size_t MEDFileUMeshAggregateCompute::getHeapMemorySizeWithoutChildren() const
{
- std::size_t ret(_m_parts.size()*sizeof(MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh>));
+ std::size_t ret(_m_parts.size()*sizeof(MCAuto<MEDCoupling1GTUMesh>));
return ret;
}
-std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
- {
- const MEDCoupling1GTUMesh *cur(*it);
- if(cur)
- ret.push_back(cur);
- }
- const MEDCouplingUMesh *m(_m);
- if(m)
- ret.push_back(m);
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ ret.push_back((const MEDCoupling1GTUMesh *)*it);
+ ret.push_back((const MEDCouplingUMesh *)_m);
return ret;
}
-MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCpy(DataArrayDouble *coords) const
+MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCopy(DataArrayDouble *coords) const
{
MEDFileUMeshAggregateCompute ret;
ret._m_parts.resize(_m_parts.size());
const MEDCoupling1GTUMesh *elt(_m_parts[i]);
if(elt)
{
- ret._m_parts[i]=static_cast<ParaMEDMEM::MEDCoupling1GTUMesh*>(elt->deepCpy());
+ ret._m_parts[i]=static_cast<MEDCoupling::MEDCoupling1GTUMesh*>(elt->deepCopy());
ret._m_parts[i]->setCoords(coords);
}
}
ret._mp_time=_mp_time; ret._m_time=_m_time;
if((const MEDCouplingUMesh *)_m)
{
- ret._m=static_cast<ParaMEDMEM::MEDCouplingUMesh*>(_m->deepCpy());
+ ret._m=static_cast<MEDCoupling::MEDCouplingUMesh*>(_m->deepCopy());
ret._m->setCoords(coords);
}
+ std::size_t sz(_part_def.size());
+ ret._part_def.clear(); ret._part_def.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(_part_def[i]);
+ if(elt)
+ ret._part_def[i]=elt->deepCopy();
+ }
return ret;
}
+void MEDFileUMeshAggregateCompute::shallowCpyMeshes()
+{
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(elt)
+ {
+ MCAuto<MEDCouplingMesh> elt2(elt->clone(false));
+ *it=DynamicCastSafe<MEDCouplingMesh,MEDCoupling1GTUMesh>(elt2);
+ }
+ }
+ const MEDCouplingUMesh *m(_m);
+ if(m)
+ _m=m->clone(false);
+}
+
bool MEDFileUMeshAggregateCompute::isEqual(const MEDFileUMeshAggregateCompute& other, double eps, std::string& what) const
{
const MEDCouplingUMesh *m1(getUmesh());
return false;
}
}
+ std::size_t sz(_part_def.size());
+ if(sz!=other._part_def.size())
+ {
+ what=std::string("number of subdivision per geo type for part definition is not the same !");
+ return false;
+ }
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
+ if(!pd0 && !pd1)
+ continue;
+ if((!pd0 && pd1) || (pd0 && !pd1))
+ {
+ what=std::string("a cell part def is defined only for one among this or other !");
+ return false;
+ }
+ bool ret(pd0->isEqual(pd1,what));
+ if(!ret)
+ return false;
+ }
return true;
}
+void MEDFileUMeshAggregateCompute::checkConsistency() const
+{
+ if(_mp_time >= _m_time)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();
+ it!=_m_parts.end(); it++)
+ (*it)->checkConsistency();
+ else
+ _m->checkConsistency();
+}
+
void MEDFileUMeshAggregateCompute::clearNonDiscrAttributes() const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
MEDFileUMeshSplitL1::ClearNonDiscrAttributes(*it);
MEDFileUMeshSplitL1::ClearNonDiscrAttributes(_m);
}
void MEDFileUMeshAggregateCompute::synchronizeTinyInfo(const MEDFileMesh& master) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
const MEDCoupling1GTUMesh *tmp(*it);
if(tmp)
return ((const MEDCouplingUMesh *)_m)==0;
//else _mp_time>=_m_time)
return _m_parts.empty();
-
}
int MEDFileUMeshAggregateCompute::getMeshDimension() const
}
}
-std::vector<int> MEDFileUMeshAggregateCompute::getDistributionOfTypes() const
+std::vector<mcIdType> MEDFileUMeshAggregateCompute::getDistributionOfTypes() const
{
if(_mp_time<_m_time)
{
}
else
{
- std::vector<int> ret;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ std::vector<mcIdType> ret;
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
const MEDCoupling1GTUMesh *tmp(*it);
if(!tmp)
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : part mesh contains null instance !");
- std::vector<int> ret0(tmp->getDistributionOfTypes());
+ std::vector<mcIdType> ret0(tmp->getDistributionOfTypes());
ret.insert(ret.end(),ret0.begin(),ret0.end());
}
return ret;
}
}
-int MEDFileUMeshAggregateCompute::getSize() const
+mcIdType MEDFileUMeshAggregateCompute::getSize() const
{
if(_mp_time<_m_time)
{
}
else
{
- int ret=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ mcIdType ret=0;
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
const MEDCoupling1GTUMesh *m(*it);
if(!m)
void MEDFileUMeshAggregateCompute::setCoords(DataArrayDouble *coords)
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
MEDCoupling1GTUMesh *tmp(*it);
if(tmp)
if(m)
m->setCoords(coords);
}
+
+MEDFileEltStruct4Mesh *MEDFileEltStruct4Mesh::New(med_idt fid, const std::string& mName, int dt, int it, int iterOnStEltOfMesh, MEDFileMeshReadSelector *mrs)
+{
+ return new MEDFileEltStruct4Mesh(fid,mName,dt,it,iterOnStEltOfMesh,mrs);
+}
+
+std::size_t MEDFileEltStruct4Mesh::getHeapMemorySizeWithoutChildren() const
+{
+ return _geo_type_name.capacity()+_vars.capacity()*sizeof(MCAuto<DataArray>);
+}
+
+std::vector<const MEDCoupling::BigMemoryObject*> MEDFileEltStruct4Mesh::getDirectChildrenWithNull() const
+{
+ std::vector<const MEDCoupling::BigMemoryObject*> ret;
+ ret.push_back(_conn);
+ ret.push_back(_common);
+ for(std::vector< MCAuto<DataArray> >::const_iterator it=_vars.begin();it!=_vars.end();it++)
+ ret.push_back(*it);
+ return ret;
+}
+
+MEDFileEltStruct4Mesh::MEDFileEltStruct4Mesh(med_idt fid, const std::string& mName, int dt, int it, int iterOnStEltOfMesh, MEDFileMeshReadSelector *mrs)
+{
+ med_geometry_type geoType;
+ INTERP_KERNEL::AutoPtr<char> geoTypeName(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
+ MEDFILESAFECALLERRD0(MEDmeshEntityInfo,(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,iterOnStEltOfMesh+1,geoTypeName,&geoType));
+ _geo_type=geoType;
+ _geo_type_name=MEDLoaderBase::buildStringFromFortran(geoTypeName,MED_NAME_SIZE);
+ mcIdType nCells(0);
+ {
+ med_bool chgt=MED_FALSE,trsf=MED_FALSE;
+ nCells=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,geoType,MED_CONNECTIVITY,MED_NODAL,&chgt,&trsf);
+ }
+ MCAuto<MEDFileMeshSupports> mss(MEDFileMeshSupports::New(fid));
+ MCAuto<MEDFileStructureElements> mse(MEDFileStructureElements::New(fid,mss));
+ mcIdType nbEntities(mse->getNumberOfNodesPerSE(_geo_type_name));
+ MCAuto<DataArrayMedInt> miConn=DataArrayMedInt::New(); miConn->alloc(nCells*nbEntities);
+ MEDFILESAFECALLERRD0(MEDmeshElementConnectivityRd,(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,_geo_type,MED_NODAL,MED_FULL_INTERLACE,miConn->getPointer()));
+ _conn=FromMedIntArray<mcIdType>(miConn);
+ _conn->applyLin(1,-1);
+ _conn->rearrange(nbEntities);
+ _common=MEDFileUMeshPerTypeCommon::New();
+ _common->loadCommonPart(fid,mName.c_str(),dt,it,nCells,geoType,MED_STRUCT_ELEMENT,mrs);
+ std::vector<std::string> vns(mse->getVarAttsOf(_geo_type_name));
+ std::size_t sz(vns.size());
+ _vars.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDFileSEVarAtt *var(mse->getVarAttOf(_geo_type_name,vns[i]));
+ MCAuto<DataArray> gen(var->getGenerator());
+ MCAuto<DataArray> arr(gen->buildNewEmptyInstance());
+ arr->alloc(nCells,var->getNbOfComponents());
+ arr->setName(vns[i]);
+ MEDFILESAFECALLERRD0(MEDmeshStructElementVarAttRd,(fid,mName.c_str(),dt,it,_geo_type,vns[i].c_str(),arr->getVoidStarPointer()));
+ _vars[i]=arr;
+ }
+}
