-// Copyright (C) 2007-2014 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2015 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "MEDFileMeshLL.hxx"
#include "MEDFileMesh.hxx"
#include "MEDLoaderBase.hxx"
+#include "MEDFileSafeCaller.txx"
#include "MEDFileMeshReadSelector.hxx"
#include "MEDCouplingUMesh.hxx"
return 0;
}
-std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildrenWithNull() const
{
return std::vector<const BigMemoryObject *>();
}
med_axis_type axistype;
for(int i=0;i<n && !found;i++)
{
- int naxis=MEDmeshnAxis(fid,i+1);
+ int naxis(MEDmeshnAxis(fid,i+1));
INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- MEDmeshInfo(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit);
+ MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
std::string cur=MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa));
ms.push_back(cur);
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
switch(type_maillage)
- {
+ {
case MED_UNSTRUCTURED_MESH:
meshType=UNSTRUCTURED;
break;
case MED_STRUCTURED_MESH:
{
med_grid_type gt;
- MEDmeshGridTypeRd(fid,mname.c_str(),>);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mname.c_str(),>));
switch(gt)
- {
+ {
case MED_CARTESIAN_GRID:
meshType=CARTESIAN;
break;
break;
default:
throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
- }
+ }
break;
}
default:
throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
- }
+ }
med_int numdt,numit;
med_float dtt;
- MEDmeshComputationStepInfo(fid,mname.c_str(),1,&numdt,&numit,&dtt);
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mname.c_str(),1,&numdt,&numit,&dtt));
dt=numdt; it=numit;
return ret;
}
std::vector< std::pair<int,int> > p(nstep);
for(int i=0;i<nstep;i++)
{
- MEDmeshComputationStepInfo(fid,mName.c_str(),i+1,&numdt,&numit,&dtt);
- p[i]=std::make_pair<int,int>(numdt,numit);
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
+ p[i]=std::make_pair(numdt,numit);
found=(numdt==dt) && (numit==numit);
}
if(!found)
med_int spaceDim;
med_sorting_type stype;
med_axis_type axistype;
- int naxis=MEDmeshnAxis(fid,mId);
+ int naxis(MEDmeshnAxis(fid,mId));
INTERP_KERNEL::AutoPtr<char> nameTmp=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
INTERP_KERNEL::AutoPtr<char> univTmp=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE);
if(MEDmeshInfo(fid,mId,nameTmp,&spaceDim,&Mdim,&type_maillage,_description.getPointer(),_dt_unit.getPointer(),
- &stype,&nstep,&axistype,axisname,axisunit)!=0)
+ &stype,&nstep,&axistype,axisname,axisunit)!=0)
throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
- MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());
+ MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
switch(type_maillage)
- {
+ {
case MED_UNSTRUCTURED_MESH:
meshType=UNSTRUCTURED;
break;
case MED_STRUCTURED_MESH:
{
med_grid_type gt;
- MEDmeshGridTypeRd(fid,mName.c_str(),>);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
switch(gt)
- {
+ {
case MED_CARTESIAN_GRID:
meshType=CARTESIAN;
break;
break;
default:
throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
- }
+ }
break;
}
default:
throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
- }
+ }
//
std::vector<std::string> infosOnComp(naxis);
for(int i=0;i<naxis;i++)
{
}
-void MEDFileUMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+std::vector<std::string> MEDFileUMeshL2::loadCommonPart(med_idt fid, int mId, const std::string& mName, int dt, int it, int& Mdim)
{
+ Mdim=-3;
_name.set(mName.c_str());
int nstep;
- int Mdim;
ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,nstep,Mdim);
+ std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,nstep,Mdim));
+ if(nstep==0)
+ {
+ Mdim=-4;
+ return std::vector<std::string>();
+ }
if(meshType!=UNSTRUCTURED)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected an unstructured one whereas in file it is not an unstructured !");
_time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
_iteration=dt;
_order=it;
+ return ret;
+}
+
+void MEDFileUMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ int Mdim;
+ std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
+ if(Mdim==-4)
+ return ;
loadConnectivity(fid,Mdim,mName,dt,it,mrs);//to improve check (dt,it) coherency
loadCoords(fid,mId,infosOnComp,mName,dt,it);
}
+void MEDFileUMeshL2::loadPart(med_idt fid, int mId, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ int Mdim;
+ std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
+ if(Mdim==-4)
+ return ;
+ loadPartOfConnectivity(fid,Mdim,mName,types,slicPerTyp,dt,it,mrs);
+ med_bool changement,transformation;
+ int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
+ std::vector<bool> fetchedNodeIds(nCoords,false);
+ for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
+ int nMin(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true)));
+ int nMax(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true)));
+ nMax=nCoords-nMax;
+ for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
+ loadPartCoords(fid,mId,infosOnComp,mName,dt,it,nMin,nMax);
+}
+
void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
{
_per_type_mesh.resize(1);
_per_type_mesh[0].clear();
for(int j=0;j<MED_N_CELL_FIXED_GEO;j++)
{
- MEDFileUMeshPerType *tmp=MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs);
+ MEDFileUMeshPerType *tmp(MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs));
if(tmp)
_per_type_mesh[0].push_back(tmp);
}
sortTypes();
}
+void MEDFileUMeshL2::loadPartOfConnectivity(med_idt fid, int mdim, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ std::size_t nbOfTypes(types.size());
+ if(slicPerTyp.size()!=3*nbOfTypes)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : The size of slicPerTyp array is expected to be equal to 3 times size of array types !");
+ std::set<INTERP_KERNEL::NormalizedCellType> types2(types.begin(),types.end());
+ if(types2.size()!=nbOfTypes)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : the geometric types in types array must appear once !");
+ _per_type_mesh.resize(1);
+ _per_type_mesh[0].clear();
+ for(std::size_t ii=0;ii<nbOfTypes;ii++)
+ {
+ int strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
+ MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
+ _per_type_mesh[0].push_back(tmp);
+ }
+ sortTypes();
+}
+
void MEDFileUMeshL2::loadCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it)
{
- int spaceDim=infosOnComp.size();
+ int spaceDim((int)infosOnComp.size());
med_bool changement,transformation;
- int nCoords=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation);
+ int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
_coords=DataArrayDouble::New();
_coords->alloc(nCoords,spaceDim);
- double *coordsPtr=_coords->getPointer();
- MEDmeshNodeCoordinateRd(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr);
+ double *coordsPtr(_coords->getPointer());
+ if (nCoords)
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
_fam_coords=DataArrayInt::New();
_fam_coords->alloc(nCoords,1);
- MEDmeshEntityFamilyNumberRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer()));
}
else
_fam_coords=0;
{
_num_coords=DataArrayInt::New();
_num_coords->alloc(nCoords,1);
- MEDmeshEntityNumberRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer()));
}
else
_num_coords=0;
{
_name_coords=DataArrayAsciiChar::New();
_name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- MEDmeshEntityNameRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
_name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
}
else
_coords->setInfoOnComponent(i,infosOnComp[i]);
}
+void MEDFileUMeshL2::loadPartCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, int nMin, int nMax)
+{
+ med_bool changement,transformation;
+ int spaceDim((int)infosOnComp.size()),nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
+ _coords=DataArrayDouble::New();
+ int nbNodesToLoad(nMax-nMin);
+ _coords->alloc(nbNodesToLoad,spaceDim);
+ med_filter filter=MED_FILTER_INIT,filter2=MED_FILTER_INIT;
+ MEDfilterBlockOfEntityCr(fid,/*nentity*/nCoords,/*nvaluesperentity*/1,/*nconstituentpervalue*/spaceDim,
+ MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
+ /*start*/nMin+1,/*stride*/1,/*count*/1,/*blocksize*/nbNodesToLoad,
+ /*lastblocksize=useless because count=1*/0,&filter);
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
+ _part_coords=PartDefinition::New(nMin,nMax,1);
+ MEDfilterClose(&filter);
+ MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
+ MED_NO_PROFILE,nMin+1,1,1,nbNodesToLoad,0,&filter2);
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ _fam_coords=DataArrayInt::New();
+ _fam_coords->alloc(nbNodesToLoad,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer()));
+ }
+ else
+ _fam_coords=0;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ _num_coords=DataArrayInt::New();
+ _num_coords->alloc(nbNodesToLoad,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer()));
+ }
+ else
+ _num_coords=0;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
+ {
+ _name_coords=DataArrayAsciiChar::New();
+ _name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
+ _name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
+ }
+ else
+ _name_coords=0;
+ MEDfilterClose(&filter2);
+ _coords->setInfoOnComponents(infosOnComp);
+}
+
void MEDFileUMeshL2::sortTypes()
{
std::set<int> mdims;
{
if(!coords)
return ;
- MEDmeshNodeCoordinateWr(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer()));
if(famCoords)
- MEDmeshEntityFamilyNumberWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer()));
if(numCoords)
- MEDmeshEntityNumberWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer()));
if(nameCoords)
{
if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer()));
}
}
_order=it;
//
med_grid_type gridtype;
- MEDmeshGridTypeRd(fid,mName.c_str(),&gridtype);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
if(gridtype!=MED_CARTESIAN_GRID)
throw INTERP_KERNEL::Exception("Invalid structured mesh ! Expected cartesian mesh type !");
_cmesh=MEDCouplingCMesh::New();
{
med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbOfElt=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf);
+ int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbOfElt,1);
da->setInfoOnComponent(0,infosOnComp[i]);
- MEDmeshGridIndexCoordinateRd(fid,mName.c_str(),dt,it,i+1,da->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
_cmesh->setCoordsAt(i,da);
}
}
med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id)
{
switch(id)
- {
+ {
case 0:
return MED_COORDINATE_AXIS1;
case 1:
return MED_COORDINATE_AXIS3;
default:
throw INTERP_KERNEL::Exception("Invalid meshdim detected in Cartesian Grid !");
- }
+ }
}
MEDFileCLMeshL2::MEDFileCLMeshL2()
//
_clmesh=MEDCouplingCurveLinearMesh::New();
INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
- MEDmeshGridStructRd(fid,mName.c_str(),dt,it,stGrid);
+ MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,stGrid));
_clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbNodes=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf);
+ int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbNodes,infosOnComp.size());
da->setInfoOnComponents(infosOnComp);
- MEDmeshNodeCoordinateRd(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
_clmesh->setCoords(da);
}
_num_time=_st->_num->getTimeOfThis();
}
+std::vector<const BigMemoryObject *> MEDFileUMeshPermCompute::getDirectChildrenWithNull() const
+{
+ std::vector<const BigMemoryObject *> ret;
+ ret.push_back((const MEDCouplingUMesh *)_m);
+ return ret;
+}
+
+std::size_t MEDFileUMeshPermCompute::getHeapMemorySizeWithoutChildren() const
+{
+ return sizeof(MEDFileUMeshPermCompute);
+}
+
MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):RefCountObject(other),_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
{
}
int sz=v.size();
std::vector<const MEDCoupling1GTUMesh *> ms(sz);
std::vector<const DataArrayInt *> fams(sz),nums(sz);
- std::vector<const DataArrayChar *> names(sz);
+ std::vector<const DataArrayChar *> names(sz);
+ std::vector<const PartDefinition *> pds(sz);
for(int i=0;i<sz;i++)
{
MEDCoupling1GTUMesh *elt(v[i]->getMesh());
MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=l2.getCoords();
elt->setCoords(tmp2);
ms[i]=elt;
+ pds[i]=v[i]->getPartDef();
}
_m_by_types.assignParts(ms);
+ _m_by_types.assignDefParts(pds);
if(l2.isFamDefinedOnLev(id))
{
for(int i=0;i<sz;i++)
return 0;
}
-std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
ret.push_back(&_m_by_types);
- if((const DataArrayInt*)_fam)
- ret.push_back((const DataArrayInt*)_fam);
- if((const DataArrayInt*)_num)
- ret.push_back((const DataArrayInt*)_num);
- if((const DataArrayInt*)_rev_num)
- ret.push_back((const DataArrayInt*)_rev_num);
- if((const DataArrayAsciiChar*)_names)
- ret.push_back((const DataArrayAsciiChar*)_names);
+ ret.push_back(&_m);
+ ret.push_back((const DataArrayInt*)_fam);
+ ret.push_back((const DataArrayInt*)_num);
+ ret.push_back((const DataArrayInt*)_rev_num);
+ ret.push_back((const DataArrayAsciiChar*)_names);
return ret;
}
assignCommonPart();
}
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
+{
+}
+
void MEDFileUMeshSplitL1::assignCommonPart()
{
_fam=DataArrayInt::New();
return tmp.retn();
}
+int MEDFileUMeshSplitL1::getNumberOfCells() const
+{
+ return _m_by_types.getNumberOfCells();
+}
+
DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
{
const DataArrayInt *fam(_fam);
return _names;
}
+const PartDefinition *MEDFileUMeshSplitL1::getPartDef(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ return _m_by_types.getPartDefOfWithoutComputation(gt);
+}
+
void MEDFileUMeshSplitL1::eraseFamilyField()
{
_fam->fillWithZero();
* This method ignores _m and _m_by_types.
*/
void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,int>& familyIds,
- std::map<std::string, std::vector<std::string> >& groups) throw(INTERP_KERNEL::Exception)
+ std::map<std::string, std::vector<std::string> >& groups)
{
std::vector< DataArrayInt * > corr;
_m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N)
{
- MEDCouplingUMesh *m(_m_by_types.getUmesh());
- if(!m)
- return;
- m->renumberNodesInConn(newNodeNumbersO2N);
+ _m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
+}
+
+void MEDFileUMeshSplitL1::serialize(std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI) const
+{
+ bigArraysI.push_back(_fam);
+ bigArraysI.push_back(_num);
+ _m_by_types.serialize(tinyInt,bigArraysI);
+}
+
+void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
+{
+ _fam=bigArraysI.back(); bigArraysI.pop_back();
+ _num=bigArraysI.back(); bigArraysI.pop_back();
+ _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
}
void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
_fam=famArr;
}
+DataArrayInt *MEDFileUMeshSplitL1::getFamilyField()
+{
+ return _fam;
+}
+
void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
{
if(!renumArr)
return m;
}
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
+ ret->unserialize(name,coo,tinyInt,bigArraysI);
+ return ret.retn();
+}
+
MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
{
return Renumber2(_num,m,cellIds);
ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt); elt->incrRef();
}
_m_parts=ret;
+ _part_def.clear(); _part_def.resize(sz);
_mp_time=std::max(_mp_time,_m_time)+1;
_m=0;
}
+void MEDFileUMeshAggregateCompute::assignDefParts(const std::vector<const PartDefinition *>& partDefs)
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : the parts require a computation !");
+ std::size_t sz(partDefs.size());
+ if(_part_def.size()!=partDefs.size() || _part_def.size()!=_m_parts.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : sizes of vectors of part definition mismatch !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(partDefs[i]);
+ if(elt)
+ elt->incrRef();
+ _part_def[i]=const_cast<PartDefinition*>(elt);
+ }
+}
+
void MEDFileUMeshAggregateCompute::assignUMesh(MEDCouplingUMesh *m)
{
_m=m;
return _m;
}
+int MEDFileUMeshAggregateCompute::getNumberOfCells() const
+{
+ if(_mp_time<=_m_time)
+ return _m->getNumberOfCells();
+ int ret(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ ret+=(*it)->getNumberOfCells();
+ return ret;
+}
+
std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
{
if(_mp_time>=_m_time)
return _m->getAllGeoTypesSorted();
}
-std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::getPartsWithoutComputation() const
+std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
{
if(_mp_time<_m_time)
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartsWithoutComputation : the parts require a computation !");
{
if(_mp_time<_m_time)
forceComputationOfPartsFromUMesh();
- return getPartsWithoutComputation();
+ return retrievePartsWithoutComputation();
}
-MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::getPartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::retrievePartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
{
- std::vector<MEDCoupling1GTUMesh *> v(getPartsWithoutComputation());
+ std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
std::size_t sz(v.size());
for(std::size_t i=0;i<sz;i++)
{
void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, int& start, int& stop) const
{
start=0; stop=0;
- std::vector<MEDCoupling1GTUMesh *> v(getPartsWithoutComputation());
+ std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
std::size_t sz(v.size());
for(std::size_t i=0;i<sz;i++)
{
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation : the geometric type is not existing !");
}
+void MEDFileUMeshAggregateCompute::renumberNodesInConnWithoutComputation(const int *newNodeNumbersO2N)
+{
+ if(_mp_time>_m_time)
+ {
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ MEDCoupling1GTUMesh *m(*it);
+ if(m)
+ m->renumberNodesInConn(newNodeNumbersO2N);
+ }
+ }
+ else
+ {
+ MEDCouplingUMesh *m(getUmesh());
+ if(!m)
+ return;
+ m->renumberNodesInConn(newNodeNumbersO2N);
+ }
+}
+
void MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh() const
{
const MEDCouplingUMesh *m(_m);
if(!m)
- throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ {
+ if(_m_parts.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ else
+ return ;// no needs to compte parts they are already here !
+ }
std::vector<MEDCouplingUMesh *> ms(m->splitByType());
std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
std::size_t sz(msMSafe.size());
_m_parts.resize(sz);
for(std::size_t i=0;i<sz;i++)
_m_parts[i]=MEDCoupling1GTUMesh::New(ms[i]);
+ _part_def.clear();
+ _part_def.resize(_m_parts.size());
_mp_time=std::max(_mp_time,_m_time);
}
+const PartDefinition *MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : the parts require a computation !");
+ if(_m_parts.size()!=_part_def.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : size of arrays are expected to be the same !");
+ std::size_t sz(_m_parts.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(mesh)
+ if(mesh->getCellModelEnum()==gt)
+ return _part_def[i];
+ }
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
+}
+
+void MEDFileUMeshAggregateCompute::serialize(std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
+ std::size_t sz(_m_parts.size());
+ tinyInt.push_back((int)sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
+ tinyInt.push_back(mesh->getCellModelEnum());
+ const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
+ const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
+ if(mesh1)
+ {
+ DataArrayInt *elt(mesh1->getNodalConnectivity());
+ if(elt)
+ elt->incrRef();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt1(elt);
+ bigArraysI.push_back(elt1);
+ }
+ else if(mesh2)
+ {
+ DataArrayInt *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
+ if(elt1)
+ elt1->incrRef();
+ if(elt2)
+ elt2->incrRef();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt11(elt1),elt22(elt2);
+ bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
+ const PartDefinition *pd(_part_def[i]);
+ if(!pd)
+ tinyInt.push_back(-1);
+ else
+ {
+ std::vector<int> tinyTmp;
+ pd->serialize(tinyTmp,bigArraysI);
+ tinyInt.push_back((int)tinyTmp.size());
+ tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
+ }
+ }
+}
+
+void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
+{
+ int nbParts(tinyInt.back()); tinyInt.pop_back();
+ _part_def.clear(); _part_def.resize(nbParts);
+ _m_parts.clear(); _m_parts.resize(nbParts);
+ for(int i=0;i<nbParts;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
+ MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
+ mesh->setCoords(coo);
+ MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ if(mesh1)
+ {
+ mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
+ }
+ else if(mesh2)
+ {
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt0,elt1;
+ elt0=bigArraysI.back(); bigArraysI.pop_back();
+ elt1=bigArraysI.back(); bigArraysI.pop_back();
+ mesh2->setNodalConnectivity(elt0,elt1);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
+ _m_parts[i]=mesh;
+ int pdid(tinyInt.back()); tinyInt.pop_back();
+ if(pdid!=-1)
+ _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
+ _mp_time=std::max(_mp_time,_m_time)+1;
+ }
+}
+
+/*!
+ * This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
+ */
+bool MEDFileUMeshAggregateCompute::isStoredSplitByType() const
+{
+ return _mp_time>=_m_time;
+}
+
std::size_t MEDFileUMeshAggregateCompute::getTimeOfThis() const
{
if(_mp_time>_m_time)
return ret;
}
-std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
- {
- const MEDCoupling1GTUMesh *cur(*it);
- if(cur)
- ret.push_back(cur);
- }
- const MEDCouplingUMesh *m(_m);
- if(m)
- ret.push_back(m);
+ ret.push_back((const MEDCoupling1GTUMesh *)*it);
+ ret.push_back((const MEDCouplingUMesh *)_m);
return ret;
}
ret._m=static_cast<ParaMEDMEM::MEDCouplingUMesh*>(_m->deepCpy());
ret._m->setCoords(coords);
}
+ std::size_t sz(_part_def.size());
+ ret._part_def.clear(); ret._part_def.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(_part_def[i]);
+ if(elt)
+ ret._part_def[i]=elt->deepCpy();
+ }
return ret;
}
return false;
}
}
+ std::size_t sz(_part_def.size());
+ if(sz!=other._part_def.size())
+ {
+ what=std::string("number of subdivision per geo type for part definition is not the same !");
+ return false;
+ }
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
+ if(!pd0 && !pd1)
+ continue;
+ if((!pd0 && pd1) || (pd0 && !pd1))
+ {
+ what=std::string("a cell part def is defined only for one among this or other !");
+ return false;
+ }
+ bool ret(pd0->isEqual(pd1,what));
+ if(!ret)
+ return false;
+ }
return true;
}
return ((const MEDCouplingUMesh *)_m)==0;
//else _mp_time>=_m_time)
return _m_parts.empty();
-
}
int MEDFileUMeshAggregateCompute::getMeshDimension() const
