-// Copyright (C) 2007-2014 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2015 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "MEDFileMeshLL.hxx"
#include "MEDFileMesh.hxx"
#include "MEDLoaderBase.hxx"
+#include "MEDFileSafeCaller.txx"
#include "MEDFileMeshReadSelector.hxx"
#include "MEDCouplingUMesh.hxx"
#include "CellModel.hxx"
#include <set>
+#include <iomanip>
extern med_geometry_type typmai[MED_N_CELL_FIXED_GEO];
extern INTERP_KERNEL::NormalizedCellType typmai2[MED_N_CELL_FIXED_GEO];
using namespace ParaMEDMEM;
+const char MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS[]="!/__\\!";//important start by - because ord('!')==33 the smallest (!=' ') to preserve orders at most.
+
+int MEDFileMeshL2::ZE_SEP2_FOR_FAMILY_KILLERS=4;
+
MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
{
}
return 0;
}
-std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildrenWithNull() const
{
return std::vector<const BigMemoryObject *>();
}
-int MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mname, ParaMEDMEM::MEDCouplingMeshType& meshType, int& dt, int& it, std::string& dtunit1)
+int MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mname, ParaMEDMEM::MEDCouplingMeshType& meshType, ParaMEDMEM::MEDCouplingAxisType& axType, int& dt, int& it, std::string& dtunit1)
{
med_mesh_type type_maillage;
char maillage_description[MED_COMMENT_SIZE+1];
med_axis_type axistype;
for(int i=0;i<n && !found;i++)
{
- int naxis=MEDmeshnAxis(fid,i+1);
+ int naxis(MEDmeshnAxis(fid,i+1));
INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- MEDmeshInfo(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit);
+ MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
+
dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
std::string cur=MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa));
ms.push_back(cur);
std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
+ axType=TraduceAxisType(axistype);
switch(type_maillage)
- {
+ {
case MED_UNSTRUCTURED_MESH:
meshType=UNSTRUCTURED;
break;
case MED_STRUCTURED_MESH:
{
med_grid_type gt;
- MEDmeshGridTypeRd(fid,mname.c_str(),>);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mname.c_str(),>));
switch(gt)
- {
+ {
case MED_CARTESIAN_GRID:
meshType=CARTESIAN;
break;
case MED_CURVILINEAR_GRID:
meshType=CURVE_LINEAR;
break;
+ case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
+ meshType=CARTESIAN;
+ break;
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
- }
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ }
break;
}
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
- }
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
+ }
med_int numdt,numit;
med_float dtt;
- MEDmeshComputationStepInfo(fid,mname.c_str(),1,&numdt,&numit,&dtt);
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mname.c_str(),1,&numdt,&numit,&dtt));
dt=numdt; it=numit;
return ret;
}
std::vector< std::pair<int,int> > p(nstep);
for(int i=0;i<nstep;i++)
{
- MEDmeshComputationStepInfo(fid,mName.c_str(),i+1,&numdt,&numit,&dtt);
- p[i]=std::make_pair<int,int>(numdt,numit);
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
+ p[i]=std::make_pair(numdt,numit);
found=(numdt==dt) && (numit==numit);
}
if(!found)
return dtt;
}
-std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, int mId, const std::string& mName, ParaMEDMEM::MEDCouplingMeshType& meshType, int& nstep, int& Mdim)
+/*!
+ * non static and non const method because _description, _dt_unit... are set in this method.
+ */
+std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, int mId, const std::string& mName, ParaMEDMEM::MEDCouplingMeshType& meshType, ParaMEDMEM::MEDCouplingAxisType& axType, int& nstep, int& Mdim)
{
med_mesh_type type_maillage;
med_int spaceDim;
med_sorting_type stype;
med_axis_type axistype;
- int naxis=MEDmeshnAxis(fid,mId);
+ int naxis(MEDmeshnAxis(fid,mId));
INTERP_KERNEL::AutoPtr<char> nameTmp=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
INTERP_KERNEL::AutoPtr<char> univTmp=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE);
if(MEDmeshInfo(fid,mId,nameTmp,&spaceDim,&Mdim,&type_maillage,_description.getPointer(),_dt_unit.getPointer(),
- &stype,&nstep,&axistype,axisname,axisunit)!=0)
+ &stype,&nstep,&axistype,axisname,axisunit)!=0)
throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
- MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());
+ MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
+ axType=TraduceAxisType(axistype);
switch(type_maillage)
- {
+ {
case MED_UNSTRUCTURED_MESH:
meshType=UNSTRUCTURED;
break;
case MED_STRUCTURED_MESH:
{
med_grid_type gt;
- MEDmeshGridTypeRd(fid,mName.c_str(),>);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
switch(gt)
- {
+ {
case MED_CARTESIAN_GRID:
meshType=CARTESIAN;
break;
case MED_CURVILINEAR_GRID:
meshType=CURVE_LINEAR;
break;
+ case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
+ meshType=CARTESIAN;
+ break;
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
- }
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ }
break;
}
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
- }
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
+ }
//
std::vector<std::string> infosOnComp(naxis);
for(int i=0;i<naxis;i++)
char nomfam[MED_NAME_SIZE+1];
med_int numfam;
int nfam=MEDnFamily(fid,meshName.c_str());
+ std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(nfam);
for(int i=0;i<nfam;i++)
{
int ngro=MEDnFamilyGroup(fid,meshName.c_str(),i+1);
INTERP_KERNEL::AutoPtr<char> attdes=new char[MED_COMMENT_SIZE*natt+1];
INTERP_KERNEL::AutoPtr<char> gro=new char[MED_LNAME_SIZE*ngro+1];
MEDfamily23Info(fid,meshName.c_str(),i+1,nomfam,attide,attval,attdes,&numfam,gro);
- std::string famName=MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE);
- fams[famName]=numfam;
+ std::string famName(MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE));
+ std::vector<std::string> grps(ngro);
for(int j=0;j<ngro;j++)
- {
- std::string groupname=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
- grps[groupname].push_back(famName);
- }
+ grps[j]=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
+ crudeFams[i]=std::pair<std::string,std::pair<int,std::vector<std::string> > >(famName,std::pair<int,std::vector<std::string> >(numfam,grps));
+ }
+ RenameFamiliesFromFileToMemInternal(crudeFams);
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it0=crudeFams.begin();it0!=crudeFams.end();it0++)
+ {
+ fams[(*it0).first]=(*it0).second.first;
+ for(std::vector<std::string>::const_iterator it1=(*it0).second.second.begin();it1!=(*it0).second.second.end();it1++)
+ grps[*it1].push_back((*it0).first);
}
}
void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const std::string& mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
{
- for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++)
+ std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(fams.size());
+ std::size_t ii(0);
+ for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++,ii++)
{
std::vector<std::string> grpsOfFam;
for(std::map<std::string, std::vector<std::string> >::const_iterator it1=grps.begin();it1!=grps.end();it1++)
if(std::find((*it1).second.begin(),(*it1).second.end(),(*it).first)!=(*it1).second.end())
grpsOfFam.push_back((*it1).first);
}
- int ngro=grpsOfFam.size();
+ crudeFams[ii]=std::pair<std::string,std::pair<int,std::vector<std::string> > >((*it).first,std::pair<int,std::vector<std::string> >((*it).second,grpsOfFam));
+ }
+ RenameFamiliesFromMemToFileInternal(crudeFams);
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++)
+ {
+ int ngro((*it).second.second.size());
INTERP_KERNEL::AutoPtr<char> groName=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE*ngro);
int i=0;
- for(std::vector<std::string>::const_iterator it2=grpsOfFam.begin();it2!=grpsOfFam.end();it2++,i++)
+ for(std::vector<std::string>::const_iterator it2=(*it).second.second.begin();it2!=(*it).second.second.end();it2++,i++)
MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE-1,groName+i*MED_LNAME_SIZE,tooLongStrPol);
INTERP_KERNEL::AutoPtr<char> famName=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
MEDLoaderBase::safeStrCpy((*it).first.c_str(),MED_NAME_SIZE,famName,tooLongStrPol);
- int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second,ngro,groName);
+ int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second.first,ngro,groName);
ret++;
}
}
+void MEDFileMeshL2::RenameFamiliesPatternInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams, RenameFamiliesPatternFunc func)
+{
+ std::size_t ii(0);
+ std::vector<std::string> fams(crudeFams.size());
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
+ fams[ii]=(*it).first;
+ if(!func(fams))
+ return ;
+ ii=0;
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
+ (*it).first=fams[ii];
+}
+
+/*!
+ * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
+ * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
+ */
+void MEDFileMeshL2::RenameFamiliesFromFileToMemInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
+{
+ RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromFileToMem);
+}
+
+bool MEDFileMeshL2::RenameFamiliesFromFileToMem(std::vector< std::string >& famNames)
+{
+ std::map<std::string,int> m;
+ std::set<std::string> s;
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ if(s.find(*it)!=s.end())
+ m[*it]=0;
+ s.insert(*it);
+ }
+ if(m.empty())
+ return false;// the general case !
+ for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::map<std::string,int>::iterator it2(m.find(*it));
+ if(it2!=m.end())
+ {
+ std::ostringstream oss; oss << *it << ZE_SEP_FOR_FAMILY_KILLERS << std::setfill('0') << std::setw(ZE_SEP2_FOR_FAMILY_KILLERS) << (*it2).second++;
+ *it=oss.str();
+ }
+ }
+ return true;
+}
+
+/*!
+ * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
+ * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
+ */
+void MEDFileMeshL2::RenameFamiliesFromMemToFileInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
+{
+ RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromMemToFile);
+}
+
+bool MEDFileMeshL2::RenameFamiliesFromMemToFile(std::vector< std::string >& famNames)
+{
+ bool isSmthingStrange(false);
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
+ if(found!=std::string::npos)
+ isSmthingStrange=true;
+ }
+ if(!isSmthingStrange)
+ return false;
+ // pattern matching
+ std::map< std::string, std::vector<std::string> > m;
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
+ if(found!=std::string::npos && found>=1)
+ {
+ std::string s1((*it).substr(found+sizeof(ZE_SEP_FOR_FAMILY_KILLERS)-1));
+ if(s1.size()!=ZE_SEP2_FOR_FAMILY_KILLERS)
+ continue;
+ int k(-1);
+ std::istringstream iss(s1);
+ iss >> k;
+ bool isOK((iss.rdstate() & ( std::istream::failbit | std::istream::eofbit)) == std::istream::eofbit);
+ if(isOK && k>=0)
+ {
+ std::string s0((*it).substr(0,found));
+ m[s0].push_back(*it);
+ }
+ }
+ }
+ if(m.empty())
+ return false;
+ // filtering
+ std::map<std::string,std::string> zeMap;
+ for(std::map< std::string, std::vector<std::string> >::const_iterator it=m.begin();it!=m.end();it++)
+ {
+ if((*it).second.size()==1)
+ continue;
+ for(std::vector<std::string>::const_iterator it1=(*it).second.begin();it1!=(*it).second.end();it1++)
+ zeMap[*it1]=(*it).first;
+ }
+ if(zeMap.empty())
+ return false;
+ // traduce
+ for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::map<std::string,std::string>::iterator it1(zeMap.find(*it));
+ if(it1!=zeMap.end())
+ *it=(*it1).second;
+ }
+ return true;
+}
+
+ParaMEDMEM::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisType(med_axis_type at)
+{
+ switch(at)
+ {
+ case MED_CARTESIAN:
+ return AX_CART;
+ case MED_CYLINDRICAL:
+ return AX_CYL;
+ case MED_SPHERICAL:
+ return AX_SPHER;
+ case MED_UNDEF_AXIS_TYPE:
+ return AX_CART;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisType : unrecognized axis type !");
+ }
+}
+
+ParaMEDMEM::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisTypeStruct(med_grid_type gt)
+{
+ switch(gt)
+ {
+ case MED_CARTESIAN_GRID:
+ return AX_CART;
+ case MED_POLAR_GRID:
+ return AX_CYL;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeStruct : only Cartesian and Cylindrical supported by MED file !");
+ }
+}
+
+med_axis_type MEDFileMeshL2::TraduceAxisTypeRev(ParaMEDMEM::MEDCouplingAxisType at)
+{
+ switch(at)
+ {
+ case AX_CART:
+ return MED_CARTESIAN;
+ case AX_CYL:
+ return MED_CYLINDRICAL;
+ case AX_SPHER:
+ return MED_SPHERICAL;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRev : unrecognized axis type !");
+ }
+}
+
+med_grid_type MEDFileMeshL2::TraduceAxisTypeRevStruct(ParaMEDMEM::MEDCouplingAxisType at)
+{
+ switch(at)
+ {
+ case AX_CART:
+ return MED_CARTESIAN_GRID;
+ case AX_CYL:
+ return MED_POLAR_GRID;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRevStruct : only Cartesian and Cylindrical supported by MED file !");
+ }
+}
+
MEDFileUMeshL2::MEDFileUMeshL2()
{
}
-void MEDFileUMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+std::vector<std::string> MEDFileUMeshL2::loadCommonPart(med_idt fid, int mId, const std::string& mName, int dt, int it, int& Mdim)
{
+ Mdim=-3;
_name.set(mName.c_str());
int nstep;
- int Mdim;
ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,nstep,Mdim);
+ ParaMEDMEM::MEDCouplingAxisType dummy3;
+ std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
if(nstep==0)
- return ;
+ {
+ Mdim=-4;
+ return std::vector<std::string>();
+ }
if(meshType!=UNSTRUCTURED)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected an unstructured one whereas in file it is not an unstructured !");
_time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
_iteration=dt;
_order=it;
+ return ret;
+}
+
+void MEDFileUMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ int Mdim;
+ std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
+ if(Mdim==-4)
+ return ;
loadConnectivity(fid,Mdim,mName,dt,it,mrs);//to improve check (dt,it) coherency
loadCoords(fid,mId,infosOnComp,mName,dt,it);
}
+void MEDFileUMeshL2::loadPart(med_idt fid, int mId, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ int Mdim;
+ std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
+ if(Mdim==-4)
+ return ;
+ loadPartOfConnectivity(fid,Mdim,mName,types,slicPerTyp,dt,it,mrs);
+ med_bool changement,transformation;
+ int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
+ std::vector<bool> fetchedNodeIds(nCoords,false);
+ for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
+ int nMin(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true)));
+ int nMax(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true)));
+ nMax=nCoords-nMax;
+ for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
+ loadPartCoords(fid,mId,infosOnComp,mName,dt,it,nMin,nMax);
+}
+
void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
{
_per_type_mesh.resize(1);
_per_type_mesh[0].clear();
for(int j=0;j<MED_N_CELL_FIXED_GEO;j++)
{
- MEDFileUMeshPerType *tmp=MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs);
+ MEDFileUMeshPerType *tmp(MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs));
if(tmp)
_per_type_mesh[0].push_back(tmp);
}
sortTypes();
}
+void MEDFileUMeshL2::loadPartOfConnectivity(med_idt fid, int mdim, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ std::size_t nbOfTypes(types.size());
+ if(slicPerTyp.size()!=3*nbOfTypes)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : The size of slicPerTyp array is expected to be equal to 3 times size of array types !");
+ std::set<INTERP_KERNEL::NormalizedCellType> types2(types.begin(),types.end());
+ if(types2.size()!=nbOfTypes)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : the geometric types in types array must appear once !");
+ _per_type_mesh.resize(1);
+ _per_type_mesh[0].clear();
+ for(std::size_t ii=0;ii<nbOfTypes;ii++)
+ {
+ int strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
+ MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
+ _per_type_mesh[0].push_back(tmp);
+ }
+ sortTypes();
+}
+
void MEDFileUMeshL2::loadCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it)
{
- int spaceDim=infosOnComp.size();
+ int spaceDim((int)infosOnComp.size());
med_bool changement,transformation;
- int nCoords=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation);
+ int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
_coords=DataArrayDouble::New();
_coords->alloc(nCoords,spaceDim);
- double *coordsPtr=_coords->getPointer();
- MEDmeshNodeCoordinateRd(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr);
+ double *coordsPtr(_coords->getPointer());
+ if (nCoords)
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
_fam_coords=DataArrayInt::New();
_fam_coords->alloc(nCoords,1);
- MEDmeshEntityFamilyNumberRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer()));
}
else
_fam_coords=0;
{
_num_coords=DataArrayInt::New();
_num_coords->alloc(nCoords,1);
- MEDmeshEntityNumberRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer()));
}
else
_num_coords=0;
{
_name_coords=DataArrayAsciiChar::New();
_name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- MEDmeshEntityNameRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
_name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
}
else
_coords->setInfoOnComponent(i,infosOnComp[i]);
}
+void MEDFileUMeshL2::loadPartCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, int nMin, int nMax)
+{
+ med_bool changement,transformation;
+ int spaceDim((int)infosOnComp.size()),nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
+ _coords=DataArrayDouble::New();
+ int nbNodesToLoad(nMax-nMin);
+ _coords->alloc(nbNodesToLoad,spaceDim);
+ med_filter filter=MED_FILTER_INIT,filter2=MED_FILTER_INIT;
+ MEDfilterBlockOfEntityCr(fid,/*nentity*/nCoords,/*nvaluesperentity*/1,/*nconstituentpervalue*/spaceDim,
+ MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
+ /*start*/nMin+1,/*stride*/1,/*count*/1,/*blocksize*/nbNodesToLoad,
+ /*lastblocksize=useless because count=1*/0,&filter);
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
+ _part_coords=PartDefinition::New(nMin,nMax,1);
+ MEDfilterClose(&filter);
+ MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
+ MED_NO_PROFILE,nMin+1,1,1,nbNodesToLoad,0,&filter2);
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ _fam_coords=DataArrayInt::New();
+ _fam_coords->alloc(nbNodesToLoad,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer()));
+ }
+ else
+ _fam_coords=0;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ _num_coords=DataArrayInt::New();
+ _num_coords->alloc(nbNodesToLoad,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer()));
+ }
+ else
+ _num_coords=0;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
+ {
+ _name_coords=DataArrayAsciiChar::New();
+ _name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
+ _name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
+ }
+ else
+ _name_coords=0;
+ MEDfilterClose(&filter2);
+ _coords->setInfoOnComponents(infosOnComp);
+}
+
void MEDFileUMeshL2::sortTypes()
{
std::set<int> mdims;
{
if(!coords)
return ;
- MEDmeshNodeCoordinateWr(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer()));
if(famCoords)
- MEDmeshEntityFamilyNumberWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer()));
if(numCoords)
- MEDmeshEntityNumberWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer()));
if(nameCoords)
{
if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer()));
}
}
return true;
}
-MEDFileCMeshL2::MEDFileCMeshL2()
+MEDFileCMeshL2::MEDFileCMeshL2():_ax_type(AX_CART)
{
}
int nstep;
int Mdim;
ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,nstep,Mdim);
+ ParaMEDMEM::MEDCouplingAxisType dummy3;
+ std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim);
if(meshType!=CARTESIAN)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
_time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
_order=it;
//
med_grid_type gridtype;
- MEDmeshGridTypeRd(fid,mName.c_str(),&gridtype);
- if(gridtype!=MED_CARTESIAN_GRID)
- throw INTERP_KERNEL::Exception("Invalid structured mesh ! Expected cartesian mesh type !");
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
+ if(gridtype!=MED_CARTESIAN_GRID && gridtype!=MED_POLAR_GRID)
+ throw INTERP_KERNEL::Exception("Invalid rectilinear mesh ! Only cartesian and polar are supported !");
+ _ax_type=TraduceAxisTypeStruct(gridtype);
_cmesh=MEDCouplingCMesh::New();
for(int i=0;i<Mdim;i++)
{
med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbOfElt=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf);
+ int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbOfElt,1);
da->setInfoOnComponent(0,infosOnComp[i]);
- MEDmeshGridIndexCoordinateRd(fid,mName.c_str(),dt,it,i+1,da->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
_cmesh->setCoordsAt(i,da);
}
}
med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id)
{
switch(id)
- {
+ {
case 0:
return MED_COORDINATE_AXIS1;
case 1:
return MED_COORDINATE_AXIS3;
default:
throw INTERP_KERNEL::Exception("Invalid meshdim detected in Cartesian Grid !");
- }
+ }
}
MEDFileCLMeshL2::MEDFileCLMeshL2()
int nstep;
int Mdim;
ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
+ ParaMEDMEM::MEDCouplingAxisType dummy3;
+ std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,dummy3,nstep,Mdim);
if(meshType!=CURVE_LINEAR)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
_time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
//
_clmesh=MEDCouplingCurveLinearMesh::New();
INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
- MEDmeshGridStructRd(fid,mName.c_str(),dt,it,stGrid);
+ MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,stGrid));
_clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbNodes=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf);
+ int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbNodes,infosOnComp.size());
da->setInfoOnComponents(infosOnComp);
- MEDmeshNodeCoordinateRd(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
_clmesh->setCoords(da);
}
_num_time=_st->_num->getTimeOfThis();
}
+std::vector<const BigMemoryObject *> MEDFileUMeshPermCompute::getDirectChildrenWithNull() const
+{
+ std::vector<const BigMemoryObject *> ret;
+ ret.push_back((const MEDCouplingUMesh *)_m);
+ return ret;
+}
+
+std::size_t MEDFileUMeshPermCompute::getHeapMemorySizeWithoutChildren() const
+{
+ return sizeof(MEDFileUMeshPermCompute);
+}
+
MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):RefCountObject(other),_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
{
}
int sz=v.size();
std::vector<const MEDCoupling1GTUMesh *> ms(sz);
std::vector<const DataArrayInt *> fams(sz),nums(sz);
- std::vector<const DataArrayChar *> names(sz);
+ std::vector<const DataArrayChar *> names(sz);
+ std::vector<const PartDefinition *> pds(sz);
for(int i=0;i<sz;i++)
{
MEDCoupling1GTUMesh *elt(v[i]->getMesh());
MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=l2.getCoords();
elt->setCoords(tmp2);
ms[i]=elt;
+ pds[i]=v[i]->getPartDef();
}
_m_by_types.assignParts(ms);
+ _m_by_types.assignDefParts(pds);
if(l2.isFamDefinedOnLev(id))
{
for(int i=0;i<sz;i++)
return 0;
}
-std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
ret.push_back(&_m_by_types);
- if((const DataArrayInt*)_fam)
- ret.push_back((const DataArrayInt*)_fam);
- if((const DataArrayInt*)_num)
- ret.push_back((const DataArrayInt*)_num);
- if((const DataArrayInt*)_rev_num)
- ret.push_back((const DataArrayInt*)_rev_num);
- if((const DataArrayAsciiChar*)_names)
- ret.push_back((const DataArrayAsciiChar*)_names);
+ ret.push_back(&_m);
+ ret.push_back((const DataArrayInt*)_fam);
+ ret.push_back((const DataArrayInt*)_num);
+ ret.push_back((const DataArrayInt*)_rev_num);
+ ret.push_back((const DataArrayAsciiChar*)_names);
return ret;
}
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::shallowCpyUsingCoords(DataArrayDouble *coords) const
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
+ ret->_m_by_types.shallowCpyMeshes();
+ ret->_m_by_types.setCoords(coords);
+ return ret.retn();
+}
+
MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCpy(DataArrayDouble *coords) const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret=new MEDFileUMeshSplitL1(*this);
+ MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
ret->_m_by_types=_m_by_types.deepCpy(coords);
if((const DataArrayInt *)_fam)
ret->_fam=_fam->deepCpy();
_m=m;
_m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCpy()));
MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
- if(!da->isIdentity())
+ if(!da->isIdentity2(m->getNumberOfCells()))
{
_num=da->invertArrayO2N2N2O(m->getNumberOfCells());
_m.updateTime();
else
{
if(!m->checkConsecutiveCellTypesAndOrder(typmai2,typmai2+MED_N_CELL_FIXED_GEO))
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh : the mode of mesh setting expects to follow the MED file numbering convention ! it is not the case !");
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh(): the mesh does not follow the MED file numbering convention! Invoke sortCellsInMEDFileFrmt() first!");
m->incrRef();
_m_by_types.assignUMesh(m);
}
assignCommonPart();
}
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
+{
+}
+
void MEDFileUMeshSplitL1::assignCommonPart()
{
_fam=DataArrayInt::New();
return _m_by_types.getGeoTypes();
}
+int MEDFileUMeshSplitL1::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ return _m_by_types.getNumberOfCellsWithType(ct);
+}
+
MEDCouplingUMesh *MEDFileUMeshSplitL1::getWholeMesh(bool renum) const
{
MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp;
return tmp.retn();
}
+int MEDFileUMeshSplitL1::getNumberOfCells() const
+{
+ return _m_by_types.getNumberOfCells();
+}
+
DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
{
const DataArrayInt *fam(_fam);
return _names;
}
+const PartDefinition *MEDFileUMeshSplitL1::getPartDef(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ return _m_by_types.getPartDefOfWithoutComputation(gt);
+}
+
void MEDFileUMeshSplitL1::eraseFamilyField()
{
_fam->fillWithZero();
* This method ignores _m and _m_by_types.
*/
void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,int>& familyIds,
- std::map<std::string, std::vector<std::string> >& groups) throw(INTERP_KERNEL::Exception)
+ std::map<std::string, std::vector<std::string> >& groups)
{
std::vector< DataArrayInt * > corr;
_m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N)
{
- MEDCouplingUMesh *m(_m_by_types.getUmesh());
- if(!m)
- return;
- m->renumberNodesInConn(newNodeNumbersO2N);
+ _m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
+}
+
+void MEDFileUMeshSplitL1::serialize(std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI) const
+{
+ bigArraysI.push_back(_fam);
+ bigArraysI.push_back(_num);
+ _m_by_types.serialize(tinyInt,bigArraysI);
+}
+
+void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
+{
+ _fam=bigArraysI.back(); bigArraysI.pop_back();
+ _num=bigArraysI.back(); bigArraysI.pop_back();
+ _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
}
void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
_fam=famArr;
}
+DataArrayInt *MEDFileUMeshSplitL1::getFamilyField()
+{
+ return _fam;
+}
+
void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
{
if(!renumArr)
return m;
}
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
+ ret->unserialize(name,coo,tinyInt,bigArraysI);
+ return ret.retn();
+}
+
MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
{
return Renumber2(_num,m,cellIds);
ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt); elt->incrRef();
}
_m_parts=ret;
+ _part_def.clear(); _part_def.resize(sz);
_mp_time=std::max(_mp_time,_m_time)+1;
_m=0;
}
+void MEDFileUMeshAggregateCompute::assignDefParts(const std::vector<const PartDefinition *>& partDefs)
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : the parts require a computation !");
+ std::size_t sz(partDefs.size());
+ if(_part_def.size()!=partDefs.size() || _part_def.size()!=_m_parts.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : sizes of vectors of part definition mismatch !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(partDefs[i]);
+ if(elt)
+ elt->incrRef();
+ _part_def[i]=const_cast<PartDefinition*>(elt);
+ }
+}
+
void MEDFileUMeshAggregateCompute::assignUMesh(MEDCouplingUMesh *m)
{
_m=m;
return _m;
}
+int MEDFileUMeshAggregateCompute::getNumberOfCells() const
+{
+ if(_mp_time<=_m_time)
+ return _m->getNumberOfCells();
+ int ret(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ ret+=(*it)->getNumberOfCells();
+ return ret;
+}
+
std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
{
if(_mp_time>=_m_time)
return _m->getAllGeoTypesSorted();
}
-std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::getPartsWithoutComputation() const
+int MEDFileUMeshAggregateCompute::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ if(_mp_time>=_m_time)
+ {
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(elt && elt->getCellModelEnum()==ct)
+ return elt->getNumberOfCells();
+ }
+ return 0;
+ }
+ else
+ return _m->getNumberOfCellsWithType(ct);
+}
+
+std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
{
if(_mp_time<_m_time)
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartsWithoutComputation : the parts require a computation !");
{
if(_mp_time<_m_time)
forceComputationOfPartsFromUMesh();
- return getPartsWithoutComputation();
+ return retrievePartsWithoutComputation();
}
-MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::getPartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::retrievePartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
{
- std::vector<MEDCoupling1GTUMesh *> v(getPartsWithoutComputation());
+ std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
std::size_t sz(v.size());
for(std::size_t i=0;i<sz;i++)
{
void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, int& start, int& stop) const
{
start=0; stop=0;
- std::vector<MEDCoupling1GTUMesh *> v(getPartsWithoutComputation());
+ std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
std::size_t sz(v.size());
for(std::size_t i=0;i<sz;i++)
{
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation : the geometric type is not existing !");
}
+void MEDFileUMeshAggregateCompute::renumberNodesInConnWithoutComputation(const int *newNodeNumbersO2N)
+{
+ if(_mp_time>_m_time)
+ {
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ MEDCoupling1GTUMesh *m(*it);
+ if(m)
+ m->renumberNodesInConn(newNodeNumbersO2N);
+ }
+ }
+ else
+ {
+ MEDCouplingUMesh *m(getUmesh());
+ if(!m)
+ return;
+ m->renumberNodesInConn(newNodeNumbersO2N);
+ }
+}
+
void MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh() const
{
const MEDCouplingUMesh *m(_m);
if(!m)
- throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ {
+ if(_m_parts.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ else
+ return ;// no needs to compte parts they are already here !
+ }
std::vector<MEDCouplingUMesh *> ms(m->splitByType());
std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
std::size_t sz(msMSafe.size());
_m_parts.resize(sz);
for(std::size_t i=0;i<sz;i++)
_m_parts[i]=MEDCoupling1GTUMesh::New(ms[i]);
+ _part_def.clear();
+ _part_def.resize(_m_parts.size());
_mp_time=std::max(_mp_time,_m_time);
}
+const PartDefinition *MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : the parts require a computation !");
+ if(_m_parts.size()!=_part_def.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : size of arrays are expected to be the same !");
+ std::size_t sz(_m_parts.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(mesh)
+ if(mesh->getCellModelEnum()==gt)
+ return _part_def[i];
+ }
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
+}
+
+void MEDFileUMeshAggregateCompute::serialize(std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
+ std::size_t sz(_m_parts.size());
+ tinyInt.push_back((int)sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
+ tinyInt.push_back(mesh->getCellModelEnum());
+ const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
+ const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
+ if(mesh1)
+ {
+ DataArrayInt *elt(mesh1->getNodalConnectivity());
+ if(elt)
+ elt->incrRef();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt1(elt);
+ bigArraysI.push_back(elt1);
+ }
+ else if(mesh2)
+ {
+ DataArrayInt *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
+ if(elt1)
+ elt1->incrRef();
+ if(elt2)
+ elt2->incrRef();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt11(elt1),elt22(elt2);
+ bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
+ const PartDefinition *pd(_part_def[i]);
+ if(!pd)
+ tinyInt.push_back(-1);
+ else
+ {
+ std::vector<int> tinyTmp;
+ pd->serialize(tinyTmp,bigArraysI);
+ tinyInt.push_back((int)tinyTmp.size());
+ tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
+ }
+ }
+}
+
+void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
+{
+ int nbParts(tinyInt.back()); tinyInt.pop_back();
+ _part_def.clear(); _part_def.resize(nbParts);
+ _m_parts.clear(); _m_parts.resize(nbParts);
+ for(int i=0;i<nbParts;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
+ MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
+ mesh->setCoords(coo);
+ MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ if(mesh1)
+ {
+ mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
+ }
+ else if(mesh2)
+ {
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt0,elt1;
+ elt0=bigArraysI.back(); bigArraysI.pop_back();
+ elt1=bigArraysI.back(); bigArraysI.pop_back();
+ mesh2->setNodalConnectivity(elt0,elt1);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
+ _m_parts[i]=mesh;
+ int pdid(tinyInt.back()); tinyInt.pop_back();
+ if(pdid!=-1)
+ _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
+ _mp_time=std::max(_mp_time,_m_time)+1;
+ }
+}
+
+/*!
+ * This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
+ */
+bool MEDFileUMeshAggregateCompute::isStoredSplitByType() const
+{
+ return _mp_time>=_m_time;
+}
+
std::size_t MEDFileUMeshAggregateCompute::getTimeOfThis() const
{
if(_mp_time>_m_time)
return ret;
}
-std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
- {
- const MEDCoupling1GTUMesh *cur(*it);
- if(cur)
- ret.push_back(cur);
- }
- const MEDCouplingUMesh *m(_m);
- if(m)
- ret.push_back(m);
+ ret.push_back((const MEDCoupling1GTUMesh *)*it);
+ ret.push_back((const MEDCouplingUMesh *)_m);
return ret;
}
ret._m=static_cast<ParaMEDMEM::MEDCouplingUMesh*>(_m->deepCpy());
ret._m->setCoords(coords);
}
+ std::size_t sz(_part_def.size());
+ ret._part_def.clear(); ret._part_def.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(_part_def[i]);
+ if(elt)
+ ret._part_def[i]=elt->deepCpy();
+ }
return ret;
}
+void MEDFileUMeshAggregateCompute::shallowCpyMeshes()
+{
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(elt)
+ {
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingMesh> elt2(elt->clone(false));
+ *it=DynamicCastSafe<MEDCouplingMesh,MEDCoupling1GTUMesh>(elt2);
+ }
+ }
+ const MEDCouplingUMesh *m(_m);
+ if(m)
+ _m=m->clone(false);
+}
+
bool MEDFileUMeshAggregateCompute::isEqual(const MEDFileUMeshAggregateCompute& other, double eps, std::string& what) const
{
const MEDCouplingUMesh *m1(getUmesh());
return false;
}
}
+ std::size_t sz(_part_def.size());
+ if(sz!=other._part_def.size())
+ {
+ what=std::string("number of subdivision per geo type for part definition is not the same !");
+ return false;
+ }
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
+ if(!pd0 && !pd1)
+ continue;
+ if((!pd0 && pd1) || (pd0 && !pd1))
+ {
+ what=std::string("a cell part def is defined only for one among this or other !");
+ return false;
+ }
+ bool ret(pd0->isEqual(pd1,what));
+ if(!ret)
+ return false;
+ }
return true;
}
return ((const MEDCouplingUMesh *)_m)==0;
//else _mp_time>=_m_time)
return _m_parts.empty();
-
}
int MEDFileUMeshAggregateCompute::getMeshDimension() const
