-// Copyright (C) 2007-2013 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2016 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
-// version 2.1 of the License.
+// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
#include "MEDFileMeshLL.hxx"
#include "MEDFileMesh.hxx"
#include "MEDLoaderBase.hxx"
+#include "MEDFileSafeCaller.txx"
+#include "MEDFileMeshReadSelector.hxx"
+#include "MEDFileStructureElement.hxx"
+#include "MEDFileMeshSupport.hxx"
#include "MEDCouplingUMesh.hxx"
#include "CellModel.hxx"
#include <set>
+#include <iomanip>
extern med_geometry_type typmai[MED_N_CELL_FIXED_GEO];
extern INTERP_KERNEL::NormalizedCellType typmai2[MED_N_CELL_FIXED_GEO];
extern med_geometry_type typmainoeud[1];
-using namespace ParaMEDMEM;
+using namespace MEDCoupling;
-MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_dt_unit(MED_LNAME_SIZE)
-{
-}
+const char MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS[]="!/__\\!";//important start by - because ord('!')==33 the smallest (!=' ') to preserve orders at most.
-int MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const char *mname, ParaMEDMEM::MEDCouplingMeshType& meshType, int& dt, int& it, std::string& dtunit1) throw(INTERP_KERNEL::Exception)
+int MEDFileMeshL2::ZE_SEP2_FOR_FAMILY_KILLERS=4;
+
+std::vector<std::string> MeshCls::getAxisInfoOnMesh(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim, MEDFileString& description, MEDFileString& dtunit, MEDFileString& univName) const
{
med_mesh_type type_maillage;
- char maillage_description[MED_COMMENT_SIZE+1];
- char dtunit[MED_LNAME_SIZE+1];
- med_int spaceDim,dim;
- char nommaa[MED_NAME_SIZE+1];
- med_int n=MEDnMesh(fid);
- bool found=false;
- int ret=-1;
+ med_int spaceDim;
med_sorting_type stype;
- std::vector<std::string> ms;
- int nstep;
med_axis_type axistype;
- for(int i=0;i<n && !found;i++)
- {
- int naxis=MEDmeshnAxis(fid,i+1);
- INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- MEDmeshInfo(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit);
- dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
- std::string cur=MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa));
- ms.push_back(cur);
- if(cur==mname)
- {
- found=true;
- ret=i+1;
- }
- }
- if(!found)
- {
- std::ostringstream oss;
- oss << "No such meshname (" << mname << ") in file ! Must be in :";
- std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
- throw INTERP_KERNEL::Exception(oss.str().c_str());
- }
+ int naxis(MEDmeshnAxis(fid,getID()));
+ INTERP_KERNEL::AutoPtr<char> nameTmp(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
+ INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
+ INTERP_KERNEL::AutoPtr<char> axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
+ INTERP_KERNEL::AutoPtr<char> univTmp(MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE));
+ if(MEDmeshInfo(fid,getID(),nameTmp,&spaceDim,&Mdim,&type_maillage,description.getPointer(),dtunit.getPointer(),
+ &stype,&nstep,&axistype,axisname,axisunit)!=0)
+ throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
+ MEDmeshUniversalNameRd(fid,nameTmp,univName.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
+ axType=MEDFileMeshL2::TraduceAxisType(axistype);
switch(type_maillage)
- {
+ {
case MED_UNSTRUCTURED_MESH:
meshType=UNSTRUCTURED;
break;
case MED_STRUCTURED_MESH:
{
med_grid_type gt;
- MEDmeshGridTypeRd(fid,mname,>);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
switch(gt)
- {
+ {
case MED_CARTESIAN_GRID:
meshType=CARTESIAN;
break;
case MED_CURVILINEAR_GRID:
meshType=CURVE_LINEAR;
break;
+ case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
+ meshType=CARTESIAN;
+ break;
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
- }
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ }
break;
}
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
+ }
+ //
+ std::vector<std::string> infosOnComp(naxis);
+ for(int i=0;i<naxis;i++)
+ {
+ std::string info(MEDLoaderBase::buildUnionUnit(((char *)axisname)+i*MED_SNAME_SIZE,MED_SNAME_SIZE,((char *)axisunit)+i*MED_SNAME_SIZE,MED_SNAME_SIZE));
+ infosOnComp[i]=info;
}
- med_int numdt,numit;
- med_float dtt;
- MEDmeshComputationStepInfo(fid,mname,1,&numdt,&numit,&dtt);
- dt=numdt; it=numit;
- return ret;
+ return infosOnComp;
}
-double MEDFileMeshL2::CheckMeshTimeStep(med_idt fid, const char *mName, int nstep, int dt, int it) throw(INTERP_KERNEL::Exception)
+double MeshCls::checkMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it) const
{
bool found=false;
med_int numdt,numit;
std::vector< std::pair<int,int> > p(nstep);
for(int i=0;i<nstep;i++)
{
- MEDmeshComputationStepInfo(fid,mName,i+1,&numdt,&numit,&dtt);
- p[i]=std::make_pair<int,int>(numdt,numit);
- found=(numdt==dt) && (numit==numit);
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
+ p[i]=std::make_pair((int)numdt,(int)numit);
+ found=(numdt==dt) && (numit==it);
+ if (found) break;
}
if(!found)
{
return dtt;
}
-std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, int mId, const char *mName, ParaMEDMEM::MEDCouplingMeshType& meshType, int& nstep, int& Mdim) throw(INTERP_KERNEL::Exception)
+std::vector<std::string> StructMeshCls::getAxisInfoOnMesh(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim, MEDFileString& description, MEDFileString& dtunit, MEDFileString& univName) const
+{
+ INTERP_KERNEL::AutoPtr<char> msn(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
+ INTERP_KERNEL::AutoPtr<char> zeDescription(MEDLoaderBase::buildEmptyString(MED_COMMENT_SIZE));
+ med_axis_type medAxType;
+ int nAxis(MEDsupportMeshnAxis(fid,getID()));
+ INTERP_KERNEL::AutoPtr<char> axisName(new char[MED_SNAME_SIZE*nAxis+1]),axisUnit(new char[MED_SNAME_SIZE*nAxis+1]);
+ int spaceDim(0),meshDim(0);
+ MEDFILESAFECALLERRD0(MEDsupportMeshInfo,(fid,getID(),msn,&spaceDim,&meshDim,zeDescription,&medAxType,axisName,axisUnit));
+ std::string descriptionCpp(MEDLoaderBase::buildStringFromFortran(zeDescription,MED_COMMENT_SIZE));
+ description.set(descriptionCpp.c_str());
+ dtunit.clear(); univName.clear(); meshType=UNSTRUCTURED; nstep=1;
+ axType=MEDFileMeshL2::TraduceAxisType(medAxType);
+ //int nmodels(0);
+ //med_bool chgt=MED_FALSE,trsf=MED_FALSE;
+ //nmodels=MEDmeshnEntity(fid,_name.c_str(),MED_NO_DT,MED_NO_IT,MED_STRUCT_ELEMENT,MED_GEO_ALL,MED_CONNECTIVITY,MED_NODAL,&chgt,&trsf);
+ std::vector<std::string> ret;
+ for(int i=0;i<nAxis;i++)
+ {
+ std::string info(DataArray::BuildInfoFromVarAndUnit(MEDLoaderBase::buildStringFromFortran(axisName+i*MED_SNAME_SIZE,MED_SNAME_SIZE),
+ MEDLoaderBase::buildStringFromFortran(axisUnit+i*MED_SNAME_SIZE,MED_SNAME_SIZE)));
+ ret.push_back(info);
+ }
+ return ret;
+}
+
+double StructMeshCls::checkMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it) const
+{
+ return 0.;
+}
+
+MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
+{
+}
+
+std::size_t MEDFileMeshL2::getHeapMemorySizeWithoutChildren() const
+{
+ return 0;
+}
+
+std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildrenWithNull() const
+{
+ return std::vector<const BigMemoryObject *>();
+}
+
+INTERP_KERNEL::AutoCppPtr<MeshOrStructMeshCls> MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& dt, int& it, std::string& dtunit1)
{
med_mesh_type type_maillage;
- med_int spaceDim;
+ char maillage_description[MED_COMMENT_SIZE+1];
+ char dtunit[MED_LNAME_SIZE+1];
+ med_int spaceDim,dim;
+ char nommaa[MED_NAME_SIZE+1];
+ med_int n=MEDnMesh(fid);
+ char found(0);
+ int ret=-1;
med_sorting_type stype;
+ std::vector<std::string> ms;
+ int nstep;
med_axis_type axistype;
- int naxis=MEDmeshnAxis(fid,mId);
- INTERP_KERNEL::AutoPtr<char> nameTmp=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
- INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- if(MEDmeshInfo(fid,mId,nameTmp,&spaceDim,&Mdim,&type_maillage,_description.getPointer(),_dt_unit.getPointer(),
- &stype,&nstep,&axistype,axisname,axisunit)!=0)
- throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
- switch(type_maillage)
+ for(int i=0;i<n && found==0;i++)
{
- case MED_UNSTRUCTURED_MESH:
- meshType=UNSTRUCTURED;
- break;
- case MED_STRUCTURED_MESH:
+ int naxis(MEDmeshnAxis(fid,i+1));
+ INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE)),axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
+ MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
+ dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
+ std::string cur(MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa)));
+ ms.push_back(cur);
+ if(cur==mName)
+ {
+ found=1;
+ ret=i+1;
+ }
+ }
+ if(found==0)
+ {//last chance ! Is it a support mesh ?
+ int nbSM(MEDnSupportMesh(fid));
+ for(int i=0;i<nbSM && found==0;i++)
+ {
+ int naxis(MEDsupportMeshnAxis(fid,i+1));
+ INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE)),axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
+ MEDFILESAFECALLERRD0(MEDsupportMeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,maillage_description,&axistype,axisname,axisunit));
+ std::string cur(MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa)));
+ ms.push_back(cur);
+ if(cur==mName)
+ {
+ found=2;
+ ret=i+1;
+ }
+ }
+ }
+ ////////////////////////
+ switch(found)
+ {
+ case 1:
{
- med_grid_type gt;
- MEDmeshGridTypeRd(fid,mName,>);
- switch(gt)
+ axType=TraduceAxisType(axistype);
+ switch(type_maillage)
{
- case MED_CARTESIAN_GRID:
- meshType=CARTESIAN;
- break;
- case MED_CURVILINEAR_GRID:
- meshType=CURVE_LINEAR;
+ case MED_UNSTRUCTURED_MESH:
+ meshType=UNSTRUCTURED;
break;
+ case MED_STRUCTURED_MESH:
+ {
+ med_grid_type gt;
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
+ switch(gt)
+ {
+ case MED_CARTESIAN_GRID:
+ meshType=CARTESIAN;
+ break;
+ case MED_CURVILINEAR_GRID:
+ meshType=CURVE_LINEAR;
+ break;
+ case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
+ meshType=CARTESIAN;
+ break;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ }
+ break;
+ }
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
}
- break;
+ med_int numdt,numit;
+ med_float dtt;
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),1,&numdt,&numit,&dtt));
+ dt=numdt; it=numit;
+ return new MeshCls(ret);
+ }
+ case 2:
+ {
+ meshType=UNSTRUCTURED;
+ dt=MED_NO_DT; it=MED_NO_IT; dtunit1.clear();
+ axType=axType=TraduceAxisType(axistype);
+ return new StructMeshCls(ret);
}
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
- }
- //
- std::vector<std::string> infosOnComp(naxis);
- for(int i=0;i<naxis;i++)
- {
- std::string info=MEDLoaderBase::buildUnionUnit(((char *)axisname)+i*MED_SNAME_SIZE,MED_SNAME_SIZE,((char *)axisunit)+i*MED_SNAME_SIZE,MED_SNAME_SIZE);
- infosOnComp[i]=info;
+ {
+ std::ostringstream oss;
+ oss << "No such meshname (" << mName << ") in file ! Must be in : ";
+ std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
}
- return infosOnComp;
+
+}
+
+/*!
+ * non static and non const method because _description, _dt_unit... are set in this method.
+ */
+std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim)
+{
+ return mId->getAxisInfoOnMesh(fid,mName,meshType,axType,nstep,Mdim,_description,_dt_unit,_univ_name);
}
-void MEDFileMeshL2::ReadFamiliesAndGrps(med_idt fid, const char *meshName, std::map<std::string,int>& fams, std::map<std::string, std::vector<std::string> >& grps)
+void MEDFileMeshL2::ReadFamiliesAndGrps(med_idt fid, const std::string& meshName, std::map<std::string,int>& fams, std::map<std::string, std::vector<std::string> >& grps, MEDFileMeshReadSelector *mrs)
{
+ if(mrs && !(mrs->isCellFamilyFieldReading() || mrs->isNodeFamilyFieldReading()))
+ return ;
char nomfam[MED_NAME_SIZE+1];
med_int numfam;
- int nfam=MEDnFamily(fid,meshName);
+ int nfam=MEDnFamily(fid,meshName.c_str());
+ std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(nfam);
for(int i=0;i<nfam;i++)
{
- int ngro=MEDnFamilyGroup(fid,meshName,i+1);
- med_int natt=MEDnFamily23Attribute(fid,meshName,i+1);
+ int ngro=MEDnFamilyGroup(fid,meshName.c_str(),i+1);
+ med_int natt=MEDnFamily23Attribute(fid,meshName.c_str(),i+1);
INTERP_KERNEL::AutoPtr<med_int> attide=new med_int[natt];
INTERP_KERNEL::AutoPtr<med_int> attval=new med_int[natt];
INTERP_KERNEL::AutoPtr<char> attdes=new char[MED_COMMENT_SIZE*natt+1];
INTERP_KERNEL::AutoPtr<char> gro=new char[MED_LNAME_SIZE*ngro+1];
- MEDfamily23Info(fid,meshName,i+1,nomfam,attide,attval,attdes,&numfam,gro);
- std::string famName=MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE);
- fams[famName]=numfam;
+ MEDfamily23Info(fid,meshName.c_str(),i+1,nomfam,attide,attval,attdes,&numfam,gro);
+ std::string famName(MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE));
+ std::vector<std::string> grps(ngro);
for(int j=0;j<ngro;j++)
- {
- std::string groupname=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
- grps[groupname].push_back(famName);
- }
+ grps[j]=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
+ crudeFams[i]=std::pair<std::string,std::pair<int,std::vector<std::string> > >(famName,std::pair<int,std::vector<std::string> >(numfam,grps));
+ }
+ RenameFamiliesFromFileToMemInternal(crudeFams);
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it0=crudeFams.begin();it0!=crudeFams.end();it0++)
+ {
+ fams[(*it0).first]=(*it0).second.first;
+ for(std::vector<std::string>::const_iterator it1=(*it0).second.second.begin();it1!=(*it0).second.second.end();it1++)
+ grps[*it1].push_back((*it0).first);
}
}
-void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const char *mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
+void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const std::string& mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
{
- for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++)
+ std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(fams.size());
+ std::size_t ii(0);
+ for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++,ii++)
{
std::vector<std::string> grpsOfFam;
for(std::map<std::string, std::vector<std::string> >::const_iterator it1=grps.begin();it1!=grps.end();it1++)
if(std::find((*it1).second.begin(),(*it1).second.end(),(*it).first)!=(*it1).second.end())
grpsOfFam.push_back((*it1).first);
}
- int ngro=grpsOfFam.size();
+ crudeFams[ii]=std::pair<std::string,std::pair<int,std::vector<std::string> > >((*it).first,std::pair<int,std::vector<std::string> >((*it).second,grpsOfFam));
+ }
+ RenameFamiliesFromMemToFileInternal(crudeFams);
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++)
+ {
+ int ngro((*it).second.second.size());
INTERP_KERNEL::AutoPtr<char> groName=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE*ngro);
int i=0;
- for(std::vector<std::string>::const_iterator it2=grpsOfFam.begin();it2!=grpsOfFam.end();it2++,i++)
- MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE-1,groName+i*MED_LNAME_SIZE,tooLongStrPol);
+ for(std::vector<std::string>::const_iterator it2=(*it).second.second.begin();it2!=(*it).second.second.end();it2++,i++)
+ MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE,groName+i*MED_LNAME_SIZE,tooLongStrPol);
INTERP_KERNEL::AutoPtr<char> famName=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
MEDLoaderBase::safeStrCpy((*it).first.c_str(),MED_NAME_SIZE,famName,tooLongStrPol);
- int ret=MEDfamilyCr(fid,mname,famName,(*it).second,ngro,groName);
+ int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second.first,ngro,groName);
ret++;
}
}
+void MEDFileMeshL2::RenameFamiliesPatternInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams, RenameFamiliesPatternFunc func)
+{
+ std::size_t ii(0);
+ std::vector<std::string> fams(crudeFams.size());
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
+ fams[ii]=(*it).first;
+ if(!func(fams))
+ return ;
+ ii=0;
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
+ (*it).first=fams[ii];
+}
+
+/*!
+ * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
+ * So this method renames families (if needed generally not !) in order to have a discriminant name for families.
+ */
+void MEDFileMeshL2::RenameFamiliesFromFileToMemInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
+{
+ RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromFileToMem);
+}
+
+bool MEDFileMeshL2::RenameFamiliesFromFileToMem(std::vector< std::string >& famNames)
+{
+ std::map<std::string,int> m;
+ std::set<std::string> s;
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ if(s.find(*it)!=s.end())
+ m[*it]=0;
+ s.insert(*it);
+ }
+ if(m.empty())
+ return false;// the general case !
+ for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::map<std::string,int>::iterator it2(m.find(*it));
+ if(it2!=m.end())
+ {
+ std::ostringstream oss; oss << *it << ZE_SEP_FOR_FAMILY_KILLERS << std::setfill('0') << std::setw(ZE_SEP2_FOR_FAMILY_KILLERS) << (*it2).second++;
+ *it=oss.str();
+ }
+ }
+ return true;
+}
+
+/*!
+ * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
+ * So this method renames families (if needed generally not !) in order to have a discriminant name for families.
+ */
+void MEDFileMeshL2::RenameFamiliesFromMemToFileInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
+{
+ RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromMemToFile);
+}
+
+bool MEDFileMeshL2::RenameFamiliesFromMemToFile(std::vector< std::string >& famNames)
+{
+ bool isSmthingStrange(false);
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
+ if(found!=std::string::npos)
+ isSmthingStrange=true;
+ }
+ if(!isSmthingStrange)
+ return false;
+ // pattern matching
+ std::map< std::string, std::vector<std::string> > m;
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
+ if(found!=std::string::npos && found>=1)
+ {
+ std::string s1((*it).substr(found+sizeof(ZE_SEP_FOR_FAMILY_KILLERS)-1));
+ if(s1.size()!=ZE_SEP2_FOR_FAMILY_KILLERS)
+ continue;
+ int k(-1);
+ std::istringstream iss(s1);
+ iss >> k;
+ bool isOK((iss.rdstate() & ( std::istream::failbit | std::istream::eofbit)) == std::istream::eofbit);
+ if(isOK && k>=0)
+ {
+ std::string s0((*it).substr(0,found));
+ m[s0].push_back(*it);
+ }
+ }
+ }
+ if(m.empty())
+ return false;
+ // filtering
+ std::map<std::string,std::string> zeMap;
+ for(std::map< std::string, std::vector<std::string> >::const_iterator it=m.begin();it!=m.end();it++)
+ {
+ if((*it).second.size()==1)
+ continue;
+ for(std::vector<std::string>::const_iterator it1=(*it).second.begin();it1!=(*it).second.end();it1++)
+ zeMap[*it1]=(*it).first;
+ }
+ if(zeMap.empty())
+ return false;
+ // traduce
+ for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::map<std::string,std::string>::iterator it1(zeMap.find(*it));
+ if(it1!=zeMap.end())
+ *it=(*it1).second;
+ }
+ return true;
+}
+
+MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisType(med_axis_type at)
+{
+ switch(at)
+ {
+ case MED_CARTESIAN:
+ return AX_CART;
+ case MED_CYLINDRICAL:
+ return AX_CYL;
+ case MED_SPHERICAL:
+ return AX_SPHER;
+ case MED_UNDEF_AXIS_TYPE:
+ return AX_CART;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisType : unrecognized axis type !");
+ }
+}
+
+MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisTypeStruct(med_grid_type gt)
+{
+ switch(gt)
+ {
+ case MED_CARTESIAN_GRID:
+ return AX_CART;
+ case MED_POLAR_GRID:
+ return AX_CYL;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeStruct : only Cartesian and Cylindrical supported by MED file !");
+ }
+}
+
+med_axis_type MEDFileMeshL2::TraduceAxisTypeRev(MEDCoupling::MEDCouplingAxisType at)
+{
+ switch(at)
+ {
+ case AX_CART:
+ return MED_CARTESIAN;
+ case AX_CYL:
+ return MED_CYLINDRICAL;
+ case AX_SPHER:
+ return MED_SPHERICAL;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRev : unrecognized axis type !");
+ }
+}
+
+med_grid_type MEDFileMeshL2::TraduceAxisTypeRevStruct(MEDCoupling::MEDCouplingAxisType at)
+{
+ switch(at)
+ {
+ case AX_CART:
+ return MED_CARTESIAN_GRID;
+ case AX_CYL:
+ return MED_POLAR_GRID;
+ case AX_SPHER:
+ return MED_POLAR_GRID;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRevStruct : unrecognized axis type !");
+ }
+}
+
MEDFileUMeshL2::MEDFileUMeshL2()
{
}
-void MEDFileUMeshL2::loadAll(med_idt fid, int mId, const char *mName, int dt, int it)
+std::vector<std::string> MEDFileUMeshL2::loadCommonPart(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it, int& Mdim)
{
- _name.set(mName);
+ Mdim=-3;
+ _name.set(mName.c_str());
int nstep;
- int Mdim;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
+ if(nstep==0)
+ {
+ Mdim=-4;
+ return std::vector<std::string>();
+ }
if(meshType!=UNSTRUCTURED)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected an unstructured one whereas in file it is not an unstructured !");
- _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
+ _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
_iteration=dt;
_order=it;
- loadConnectivity(fid,Mdim,mName,dt,it);//to improve check (dt,it) coherency
- loadCoords(fid,mId,infosOnComp,mName,dt,it);
+ return ret;
+}
+
+void MEDFileUMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ int Mdim;
+ std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
+ if(Mdim==-4)
+ return ;
+ loadConnectivity(fid,Mdim,mName,dt,it,mrs);//to improve check (dt,it) coherency
+ loadCoords(fid,infosOnComp,mName,dt,it);
+}
+
+void MEDFileUMeshL2::loadPart(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ int Mdim;
+ std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
+ if(Mdim==-4)
+ return ;
+ loadPartOfConnectivity(fid,Mdim,mName,types,slicPerTyp,dt,it,mrs);
+ med_bool changement,transformation;
+ int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
+ std::vector<bool> fetchedNodeIds(nCoords,false);
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
+ int nMin(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true)));
+ int nMax(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true)));
+ nMax=nCoords-nMax;
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ (*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
+ loadPartCoords(fid,infosOnComp,mName,dt,it,nMin,nMax);
}
-void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const char *mName, int dt, int it)
+void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
{
_per_type_mesh.resize(1);
_per_type_mesh[0].clear();
for(int j=0;j<MED_N_CELL_FIXED_GEO;j++)
{
- MEDFileUMeshPerType *tmp=MEDFileUMeshPerType::New(fid,mName,dt,it,mdim,typmai[j],typmai2[j]);
+ MEDFileUMeshPerType *tmp(MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs));
if(tmp)
_per_type_mesh[0].push_back(tmp);
}
sortTypes();
}
-void MEDFileUMeshL2::loadCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const char *mName, int dt, int it) throw(INTERP_KERNEL::Exception)
+void MEDFileUMeshL2::loadPartOfConnectivity(med_idt fid, int mdim, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ std::size_t nbOfTypes(types.size());
+ if(slicPerTyp.size()!=3*nbOfTypes)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : The size of slicPerTyp array is expected to be equal to 3 times size of array types !");
+ std::set<INTERP_KERNEL::NormalizedCellType> types2(types.begin(),types.end());
+ if(types2.size()!=nbOfTypes)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : the geometric types in types array must appear once !");
+ _per_type_mesh.resize(1);
+ _per_type_mesh[0].clear();
+ for(std::size_t ii=0;ii<nbOfTypes;ii++)
+ {
+ int strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
+ MCAuto<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
+ _per_type_mesh[0].push_back(tmp);
+ }
+ sortTypes();
+}
+
+void MEDFileUMeshL2::loadCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it)
{
- int spaceDim=infosOnComp.size();
+ int spaceDim((int)infosOnComp.size());
med_bool changement,transformation;
- int nCoords=MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation);
+ int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
_coords=DataArrayDouble::New();
_coords->alloc(nCoords,spaceDim);
- double *coordsPtr=_coords->getPointer();
- MEDmeshNodeCoordinateRd(fid,mName,dt,it,MED_FULL_INTERLACE,coordsPtr);
- if(MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ double *coordsPtr(_coords->getPointer());
+ if (nCoords)
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
_fam_coords=DataArrayInt::New();
_fam_coords->alloc(nCoords,1);
- MEDmeshEntityFamilyNumberRd(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer()));
}
else
_fam_coords=0;
- if(MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
_num_coords=DataArrayInt::New();
_num_coords->alloc(nCoords,1);
- MEDmeshEntityNumberRd(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer()));
}
else
_num_coords=0;
- if(MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
{
_name_coords=DataArrayAsciiChar::New();
_name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- MEDmeshEntityNameRd(fid,mName,dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
_name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
}
else
_name_coords=0;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_GLOBAL_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ _global_num_coords=DataArrayInt::New();
+ _global_num_coords->alloc(nCoords,1);
+ MEDFILESAFECALLERRD0(MEDmeshGlobalNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_global_num_coords->getPointer()));
+ }
for(int i=0;i<spaceDim;i++)
- _coords->setInfoOnComponent(i,infosOnComp[i].c_str());
+ _coords->setInfoOnComponent(i,infosOnComp[i]);
+}
+
+void MEDFileUMeshL2::loadPartCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, int nMin, int nMax)
+{
+ med_bool changement,transformation;
+ int spaceDim((int)infosOnComp.size()),nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
+ _coords=DataArrayDouble::New();
+ int nbNodesToLoad(nMax-nMin);
+ _coords->alloc(nbNodesToLoad,spaceDim);
+ med_filter filter=MED_FILTER_INIT,filter2=MED_FILTER_INIT;
+ MEDfilterBlockOfEntityCr(fid,/*nentity*/nCoords,/*nvaluesperentity*/1,/*nconstituentpervalue*/spaceDim,
+ MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
+ /*start*/nMin+1,/*stride*/1,/*count*/1,/*blocksize*/nbNodesToLoad,
+ /*lastblocksize=useless because count=1*/0,&filter);
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
+ _part_coords=PartDefinition::New(nMin,nMax,1);
+ MEDfilterClose(&filter);
+ MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
+ MED_NO_PROFILE,nMin+1,1,1,nbNodesToLoad,0,&filter2);
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ _fam_coords=DataArrayInt::New();
+ _fam_coords->alloc(nbNodesToLoad,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer()));
+ }
+ else
+ _fam_coords=0;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ _num_coords=DataArrayInt::New();
+ _num_coords->alloc(nbNodesToLoad,1);
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer()));
+ }
+ else
+ _num_coords=0;
+ if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
+ {
+ _name_coords=DataArrayAsciiChar::New();
+ _name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
+ _name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
+ }
+ else
+ _name_coords=0;
+ MEDfilterClose(&filter2);
+ _coords->setInfoOnComponents(infosOnComp);
}
void MEDFileUMeshL2::sortTypes()
{
std::set<int> mdims;
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
+ std::vector< MCAuto<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
_per_type_mesh.clear();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
mdims.insert((*it)->getDim());
if(mdims.empty())
return;
_per_type_mesh.resize(mdim+1);
for(int dim=mdim+1;dim!=0;dim--)
{
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
+ std::vector< MCAuto<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
if((*it)->getDim()==dim-1)
elt.push_back(*it);
}
// suppression of contiguous empty levels at the end of _per_type_mesh.
int nbOfUselessLev=0;
bool isFirst=true;
- for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
{
if((*it2).empty() && isFirst)
{
_per_type_mesh.resize(_per_type_mesh.size()-nbOfUselessLev);
}
-void MEDFileUMeshL2::WriteCoords(med_idt fid, const char *mname, int dt, int it, double time, const DataArrayDouble *coords, const DataArrayInt *famCoords, const DataArrayInt *numCoords, const DataArrayAsciiChar *nameCoords)
+void MEDFileUMeshL2::WriteCoords(med_idt fid, const std::string& mname, int dt, int it, double time, const DataArrayDouble *coords, const DataArrayInt *famCoords, const DataArrayInt *numCoords, const DataArrayAsciiChar *nameCoords, const DataArrayInt *globalNumCoords)
{
if(!coords)
return ;
- MEDmeshNodeCoordinateWr(fid,mname,dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->begin()));
if(famCoords)
- MEDmeshEntityFamilyNumberWr(fid,mname,dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->begin()));
if(numCoords)
- MEDmeshEntityNumberWr(fid,mname,dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->begin()));
if(nameCoords)
{
if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,mname,dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->begin()));
}
+ if(globalNumCoords)
+ MEDFILESAFECALLERWR0(MEDmeshGlobalNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NONE,globalNumCoords->getNumberOfTuples(),globalNumCoords->begin()));
}
bool MEDFileUMeshL2::isFamDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getFam()==0)
return false;
return true;
bool MEDFileUMeshL2::isNumDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getNum()==0)
return false;
return true;
bool MEDFileUMeshL2::isNamesDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getNames()==0)
return false;
return true;
}
-MEDFileCMeshL2::MEDFileCMeshL2()
+MEDFileCMeshL2::MEDFileCMeshL2():_ax_type(AX_CART)
{
}
-void MEDFileCMeshL2::loadAll(med_idt fid, int mId, const char *mName, int dt, int it) throw(INTERP_KERNEL::Exception)
+void MEDFileCMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it)
{
- _name.set(mName);
+ _name.set(mName.c_str());
int nstep;
int Mdim;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> infosOnComp(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
if(meshType!=CARTESIAN)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
- _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
+ _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
_iteration=dt;
_order=it;
//
med_grid_type gridtype;
- MEDmeshGridTypeRd(fid,mName,&gridtype);
- if(gridtype!=MED_CARTESIAN_GRID)
- throw INTERP_KERNEL::Exception("Invalid structured mesh ! Expected cartesian mesh type !");
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
+ if(gridtype!=MED_CARTESIAN_GRID && gridtype!=MED_POLAR_GRID)
+ throw INTERP_KERNEL::Exception("Invalid rectilinear mesh ! Only cartesian and polar are supported !");
+ _ax_type=TraduceAxisTypeStruct(gridtype);
_cmesh=MEDCouplingCMesh::New();
for(int i=0;i<Mdim;i++)
{
med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbOfElt=MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf);
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
+ int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
+ MCAuto<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbOfElt,1);
- da->setInfoOnComponent(0,infosOnComp[i].c_str());
- MEDmeshGridIndexCoordinateRd(fid,mName,dt,it,i+1,da->getPointer());
+ da->setInfoOnComponent(0,infosOnComp[i]);
+ MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
_cmesh->setCoordsAt(i,da);
}
}
-med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id) throw(INTERP_KERNEL::Exception)
+med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id)
{
switch(id)
- {
+ {
case 0:
return MED_COORDINATE_AXIS1;
case 1:
return MED_COORDINATE_AXIS3;
default:
throw INTERP_KERNEL::Exception("Invalid meshdim detected in Cartesian Grid !");
- }
+ }
}
MEDFileCLMeshL2::MEDFileCLMeshL2()
{
}
-void MEDFileCLMeshL2::loadAll(med_idt fid, int mId, const char *mName, int dt, int it) throw(INTERP_KERNEL::Exception)
+void MEDFileCLMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it)
{
- _name.set(mName);
+ _name.set(mName.c_str());
int nstep;
int Mdim;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> infosOnComp(getAxisInfoOnMesh(fid,mId,mName,meshType,dummy3,nstep,Mdim));
if(meshType!=CURVE_LINEAR)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
- _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
+ _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
_iteration=dt;
_order=it;
//
_clmesh=MEDCouplingCurveLinearMesh::New();
INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
- MEDmeshGridStructRd(fid,mName,dt,it,stGrid);
+ MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,stGrid));
_clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbNodes=MEDmeshnEntity(fid,mName,dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf);
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
+ int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
+ MCAuto<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbNodes,infosOnComp.size());
da->setInfoOnComponents(infosOnComp);
- MEDmeshNodeCoordinateRd(fid,mName,dt,it,MED_FULL_INTERLACE,da->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
_clmesh->setCoords(da);
}
*/
MEDFileUMeshPermCompute::operator MEDCouplingUMesh *() const
{
- _st->_m_by_types->updateTime();
_st->_num->updateTime();
if((MEDCouplingUMesh *)_m==0)
{
updateTime();
- _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types->deepCpy());
- _m->renumberCells(_st->_num->getConstPointer(),true);
+ _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
+ _m->renumberCells(_st->_num->begin(),true);
return _m.retn();
}
else
{
- if(_mpt_time==_st->_m_by_types->getTimeOfThis() && _num_time==_st->_num->getTimeOfThis())
+ if(_mpt_time==_st->_m_by_types.getTimeOfThis() && _num_time==_st->_num->getTimeOfThis())
return _m.retn();
else
{
updateTime();
- _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types->deepCpy());
- _m->renumberCells(_st->_num->getConstPointer(),true);
+ _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
+ _m->renumberCells(_st->_num->begin(),true);
return _m.retn();
}
}
void MEDFileUMeshPermCompute::updateTime() const
{
- _mpt_time=_st->_m_by_types->getTimeOfThis();
+ _mpt_time=_st->_m_by_types.getTimeOfThis();
_num_time=_st->_num->getTimeOfThis();
}
-MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
+std::vector<const BigMemoryObject *> MEDFileUMeshPermCompute::getDirectChildrenWithNull() const
+{
+ std::vector<const BigMemoryObject *> ret;
+ ret.push_back((const MEDCouplingUMesh *)_m);
+ return ret;
+}
+
+std::size_t MEDFileUMeshPermCompute::getHeapMemorySizeWithoutChildren() const
+{
+ return sizeof(MEDFileUMeshPermCompute);
+}
+
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):RefCountObject(other),_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
{
}
-MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const char *mName, int id):_m(this)
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const std::string& mName, int id):_m(this)
{
- const std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& v=l2.getLev(id);
+ const std::vector< MCAuto<MEDFileUMeshPerType> >& v=l2.getLev(id);
if(v.empty())
return;
int sz=v.size();
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > msMSafe(sz);
- std::vector<const MEDCouplingUMesh *> ms(sz);
+ std::vector<const MEDCoupling1GTUMesh *> ms(sz);
+ std::vector<const DataArrayInt *> fams(sz),nums(sz);
+ std::vector<const DataArrayChar *> names(sz);
+ std::vector<const PartDefinition *> pds(sz);
for(int i=0;i<sz;i++)
{
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp=MEDCouplingUMesh::New("",v[i]->getDim());
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=l2.getCoords();
- tmp->setCoords(tmp2);
- tmp->setConnectivity(const_cast<DataArrayInt *>(v[i]->getNodal()),const_cast<DataArrayInt *>(v[i]->getNodalIndex()));
- ms[i]=tmp; msMSafe[i]=tmp;
+ MEDCoupling1GTUMesh *elt(v[i]->getMesh());
+ MCAuto<DataArrayDouble> tmp2=l2.getCoords();
+ elt->setCoords(tmp2);
+ ms[i]=elt;
+ pds[i]=v[i]->getPartDef();
}
- _m_by_types=MEDCouplingUMesh::MergeUMeshesOnSameCoords(ms);
- _m_by_types->setName(mName);
+ _m_by_types.assignParts(ms);
+ _m_by_types.assignDefParts(pds);
if(l2.isFamDefinedOnLev(id))
{
- int nbOfCells=_m_by_types->getNumberOfCells();
- _fam=DataArrayInt::New();
- _fam->alloc(nbOfCells,1);
- int *w=_fam->getPointer();
for(int i=0;i<sz;i++)
- w=std::copy(v[i]->getFam()->getConstPointer(),v[i]->getFam()->getConstPointer()+v[i]->getFam()->getNumberOfTuples(),w);
+ fams[i]=v[i]->getFam();
+ if(sz!=1)
+ _fam=DataArrayInt::Aggregate(fams);
+ else
+ {
+ fams[0]->incrRef();
+ _fam=const_cast<DataArrayInt *>(fams[0]);
+ }
}
if(l2.isNumDefinedOnLev(id))
{
- int nbOfCells=_m_by_types->getNumberOfCells();
- _num=DataArrayInt::New();
- _num->alloc(nbOfCells,1);
- int *w=_num->getPointer();
for(int i=0;i<sz;i++)
- w=std::copy(v[i]->getNum()->getConstPointer(),v[i]->getNum()->getConstPointer()+v[i]->getNum()->getNumberOfTuples(),w);
+ nums[i]=v[i]->getNum();
+ if(sz!=1)
+ _num=DataArrayInt::Aggregate(nums);
+ else
+ {
+ nums[0]->incrRef();
+ _num=const_cast<DataArrayInt *>(nums[0]);
+ }
computeRevNum();
}
if(l2.isNamesDefinedOnLev(id))
{
- int nbOfCells=_m_by_types->getNumberOfCells();
- _names=DataArrayAsciiChar::New();
- _names->alloc(nbOfCells,MED_SNAME_SIZE);
- char *w=_names->getPointer();
for(int i=0;i<sz;i++)
- w=std::copy(v[i]->getNames()->getConstPointer(),v[i]->getNames()->getConstPointer()+v[i]->getNames()->getNbOfElems(),w);
+ names[i]=v[i]->getNames();
+ _names=dynamic_cast<DataArrayAsciiChar *>(DataArrayChar::Aggregate(names));
}
}
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCoupling1GTUMesh *m):_m(this)
+{
+ std::vector< const MEDCoupling1GTUMesh * > v(1);
+ v[0]=m;
+ assignParts(v);
+}
+
MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m):_m(this)
{
assignMesh(m,true);
assignMesh(m,newOrOld);
}
-std::size_t MEDFileUMeshSplitL1::getHeapMemorySize() const
+void MEDFileUMeshSplitL1::setName(const std::string& name)
{
- std::size_t ret=0;
- if((const MEDCouplingUMesh *)_m_by_types)
- {
- ret+=_m_by_types->getHeapMemorySize();
- if((const DataArrayDouble *)_m_by_types->getCoords())
- ret-=_m_by_types->getCoords()->getHeapMemorySize();
- }
- if((const DataArrayInt*)_fam)
- ret+=_fam->getHeapMemorySize();
- if((const DataArrayInt*)_num)
- ret+=_num->getHeapMemorySize();
- if((const DataArrayInt*)_rev_num)
- ret+=_rev_num->getHeapMemorySize();
- if((const DataArrayAsciiChar*)_names)
- ret+=_names->getHeapMemorySize();
- return ret;
+ _m_by_types.setName(name);
}
-MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCpy() const
+std::size_t MEDFileUMeshSplitL1::getHeapMemorySizeWithoutChildren() const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret=new MEDFileUMeshSplitL1(*this);
- if((const MEDCouplingUMesh*)_m_by_types)
- ret->_m_by_types=static_cast<MEDCouplingUMesh*>(_m_by_types->deepCpy());
- if((const DataArrayInt *)_fam)
- ret->_fam=_fam->deepCpy();
- if((const DataArrayInt *)_num)
- ret->_num=_num->deepCpy();
- if((const DataArrayInt *)_rev_num)
- ret->_rev_num=_rev_num->deepCpy();
- if((const DataArrayAsciiChar *)_names)
- ret->_names=_names->deepCpy();
- return ret.retn();
+ return 0;
}
-bool MEDFileUMeshSplitL1::isEqual(const MEDFileUMeshSplitL1 *other, double eps, std::string& what) const
+std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildrenWithNull() const
{
- const MEDCouplingUMesh *m1=_m_by_types;
- const MEDCouplingUMesh *m2=other->_m_by_types;
- if((m1==0 && m2!=0) || (m1!=0 && m2==0))
- {
- what="Presence of mesh in one sublevel and not in other!";
- return false;
+ std::vector<const BigMemoryObject *> ret;
+ ret.push_back(&_m_by_types);
+ ret.push_back(&_m);
+ ret.push_back((const DataArrayInt*)_fam);
+ ret.push_back((const DataArrayInt*)_num);
+ ret.push_back((const DataArrayInt*)_rev_num);
+ ret.push_back((const DataArrayAsciiChar*)_names);
+ return ret;
+}
+
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::shallowCpyUsingCoords(DataArrayDouble *coords) const
+{
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
+ ret->_m_by_types.shallowCpyMeshes();
+ ret->_m_by_types.setCoords(coords);
+ return ret.retn();
+}
+
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCopy(DataArrayDouble *coords) const
+{
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
+ ret->_m_by_types=_m_by_types.deepCopy(coords);
+ if((const DataArrayInt *)_fam)
+ ret->_fam=_fam->deepCopy();
+ if((const DataArrayInt *)_num)
+ ret->_num=_num->deepCopy();
+ if((const DataArrayInt *)_rev_num)
+ ret->_rev_num=_rev_num->deepCopy();
+ if((const DataArrayAsciiChar *)_names)
+ ret->_names=_names->deepCopy();
+ return ret.retn();
+}
+
+void MEDFileUMeshSplitL1::checkConsistency() const
+{
+ if (!_fam || _fam->getNumberOfTuples() != getSize())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): internal family array has an invalid size!");
+ int nbCells = getSize();
+ if (_num)
+ {
+ _num->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array!");
+ int pos;
+ int maxValue=_num->getMaxValue(pos);
+ if (!_rev_num || _rev_num->getNumberOfTuples() != (maxValue+1))
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal revert node numbering array!");
}
- if(m1)
- if(!m1->isEqual(m2,eps))
- {
- what="meshes at a sublevel are not deeply equal !";
- return false;
- }
+ if ((_num && !_rev_num) || (!_num && _rev_num))
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal numbering arrays (one is null)!");
+ if (_num && !_num->hasUniqueValues())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array: duplicates found!");
+ if (_names)
+ _names->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): internal cell naming array has an invalid size!");
+
+ _m_by_types.checkConsistency();
+}
+
+bool MEDFileUMeshSplitL1::isEqual(const MEDFileUMeshSplitL1 *other, double eps, std::string& what) const
+{
+ if(!_m_by_types.isEqual(other->_m_by_types,eps,what))
+ return false;
const DataArrayInt *d1=_fam;
const DataArrayInt *d2=other->_fam;
if((d1==0 && d2!=0) || (d1!=0 && d2==0))
void MEDFileUMeshSplitL1::synchronizeTinyInfo(const MEDFileMesh& master) const
{
- const MEDCouplingUMesh *tmp=_m_by_types;
- if(!tmp)
- return ;
- (const_cast<MEDCouplingUMesh *>(tmp))->setName(master.getName());
- (const_cast<MEDCouplingUMesh *>(tmp))->setDescription(master.getDescription());
- (const_cast<MEDCouplingUMesh *>(tmp))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
- (const_cast<MEDCouplingUMesh *>(tmp))->setTimeUnit(master.getTimeUnit());
+ _m_by_types.synchronizeTinyInfo(master);
}
void MEDFileUMeshSplitL1::clearNonDiscrAttributes() const
{
- ClearNonDiscrAttributes(_m_by_types);
+ _m_by_types.clearNonDiscrAttributes();
}
void MEDFileUMeshSplitL1::ClearNonDiscrAttributes(const MEDCouplingMesh *tmp)
(const_cast<MEDCouplingMesh *>(tmp))->setTimeUnit("");
}
-void MEDFileUMeshSplitL1::assignMesh(MEDCouplingUMesh *m, bool newOrOld) throw(INTERP_KERNEL::Exception)
+void MEDFileUMeshSplitL1::setCoords(DataArrayDouble *coords)
+{
+ _m_by_types.setCoords(coords);
+}
+
+void MEDFileUMeshSplitL1::assignMesh(MEDCouplingUMesh *m, bool newOrOld)
{
if(newOrOld)
{
m->incrRef();
_m=m;
- _m_by_types=(MEDCouplingUMesh *)m->deepCpy();
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_m_by_types->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
- if(!da->isIdentity())
+ _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCopy()));
+ MCAuto<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
+ if(!da->isIota(m->getNumberOfCells()))
{
_num=da->invertArrayO2N2N2O(m->getNumberOfCells());
_m.updateTime();
computeRevNum();
- _m_by_types->renumberCells(da->getConstPointer(),false);
+ _m_by_types.getUmesh()->renumberCells(da->begin(),false);
}
}
else
{
if(!m->checkConsecutiveCellTypesAndOrder(typmai2,typmai2+MED_N_CELL_FIXED_GEO))
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh : the mode of mesh setting expects to follow the MED file numbering convention ! it is not the case !");
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh(): the mesh does not follow the MED file numbering convention! Invoke sortCellsInMEDFileFrmt() first!");
m->incrRef();
- _m_by_types=m;
+ _m_by_types.assignUMesh(m);
}
+ assignCommonPart();
+}
+
+void MEDFileUMeshSplitL1::forceComputationOfParts() const
+{
+ _m_by_types.forceComputationOfPartsFromUMesh();
+}
+
+void MEDFileUMeshSplitL1::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
+{
+ _m_by_types.assignParts(mParts);
+ assignCommonPart();
+}
+
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
+{
+}
+
+void MEDFileUMeshSplitL1::assignCommonPart()
+{
_fam=DataArrayInt::New();
- _fam->alloc(m->getNumberOfCells(),1);
+ _fam->alloc(_m_by_types.getSize(),1);
_fam->fillWithValue(0);
}
bool MEDFileUMeshSplitL1::empty() const
{
- return ((const MEDCouplingUMesh *)_m_by_types)==0;
+ return _m_by_types.empty();
}
bool MEDFileUMeshSplitL1::presenceOfOneFams(const std::vector<int>& ids) const
int MEDFileUMeshSplitL1::getMeshDimension() const
{
- return _m_by_types->getMeshDimension();
+ return _m_by_types.getMeshDimension();
}
void MEDFileUMeshSplitL1::simpleRepr(std::ostream& oss) const
{
- std::vector<int> code=_m_by_types->getDistributionOfTypes();
+ std::vector<int> code=_m_by_types.getDistributionOfTypes();
int nbOfTypes=code.size()/3;
for(int i=0;i<nbOfTypes;i++)
{
}
}
-int MEDFileUMeshSplitL1::getSize() const throw(INTERP_KERNEL::Exception)
+int MEDFileUMeshSplitL1::getSize() const
{
- if((const MEDCouplingUMesh *)_m_by_types==0)
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::getSize : no mesh specified at level !");
- return _m_by_types->getNumberOfCells();
+ return _m_by_types.getSize();
}
MEDCouplingUMesh *MEDFileUMeshSplitL1::getFamilyPart(const int *idsBg, const int *idsEnd, bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> eltsToKeep=_fam->getIdsEqualList(idsBg,idsEnd);
- MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types->buildPartOfMySelf(eltsToKeep->getConstPointer(),eltsToKeep->getConstPointer()+eltsToKeep->getNumberOfTuples(),true);
+ MCAuto<DataArrayInt> eltsToKeep=_fam->findIdsEqualList(idsBg,idsEnd);
+ MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types.getUmesh()->buildPartOfMySelf(eltsToKeep->begin(),eltsToKeep->end(),true);
if(renum)
- return renumIfNeeded(m,eltsToKeep->getConstPointer());
+ return renumIfNeeded(m,eltsToKeep->begin());
return m;
}
DataArrayInt *MEDFileUMeshSplitL1::getFamilyPartArr(const int *idsBg, const int *idsEnd, bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_fam->getIdsEqualList(idsBg,idsEnd);
+ MCAuto<DataArrayInt> da=_fam->findIdsEqualList(idsBg,idsEnd);
if(renum)
return renumIfNeededArr(da);
return da.retn();
}
+std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshSplitL1::getGeoTypes() const
+{
+ return _m_by_types.getGeoTypes();
+}
+
+int MEDFileUMeshSplitL1::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ return _m_by_types.getNumberOfCellsWithType(ct);
+}
+
MEDCouplingUMesh *MEDFileUMeshSplitL1::getWholeMesh(bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp;
- if(renum)
+ MCAuto<MEDCouplingUMesh> tmp;
+ if(renum && ((const DataArrayInt *)_num))
tmp=_m;
else
- tmp=_m_by_types;
+ { tmp=_m_by_types.getUmesh(); if(tmp) tmp->incrRef(); }
return tmp.retn();
}
-DataArrayInt *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField() throw(INTERP_KERNEL::Exception)
+int MEDFileUMeshSplitL1::getNumberOfCells() const
+{
+ return _m_by_types.getNumberOfCells();
+}
+
+DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ const DataArrayInt *fam(_fam);
+ if(!fam)
+ return 0;
+ int start(0),stop(0);
+ _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
+ return fam->selectByTupleIdSafeSlice(start,stop,1);
+}
+
+DataArrayInt *MEDFileUMeshSplitL1::extractNumberFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ const DataArrayInt *num(_num);
+ if(!num)
+ return 0;
+ int start(0),stop(0);
+ _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
+ return num->selectByTupleIdSafeSlice(start,stop,1);
+}
+
+DataArrayInt *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField()
{
if((DataArrayInt *)_fam)
return _fam;
- MEDCouplingUMesh *m(_m_by_types);
- if(!m)
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField : impossible to create a family field array because no mesh specified on this level !");
- int nbOfTuples=m->getNumberOfCells();
+ int nbOfTuples=_m_by_types.getSize();
_fam=DataArrayInt::New(); _fam->alloc(nbOfTuples,1); _fam->fillWithZero();
return _fam;
}
return _names;
}
+const PartDefinition *MEDFileUMeshSplitL1::getPartDef(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ return _m_by_types.getPartDefOfWithoutComputation(gt);
+}
+
void MEDFileUMeshSplitL1::eraseFamilyField()
{
_fam->fillWithZero();
* This method ignores _m and _m_by_types.
*/
void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,int>& familyIds,
- std::map<std::string, std::vector<std::string> >& groups) throw(INTERP_KERNEL::Exception)
+ std::map<std::string, std::vector<std::string> >& groups)
{
std::vector< DataArrayInt * > corr;
_m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
+ std::vector< MCAuto<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
std::vector< std::vector<int> > fidsOfGroups;
std::vector< const DataArrayInt * > corr2(corr.begin(),corr.end());
_fam=DataArrayInt::MakePartition(corr2,((MEDCouplingUMesh *)_m)->getNumberOfCells(),fidsOfGroups);
*w=famIdTrad[*w];
}
-void MEDFileUMeshSplitL1::write(med_idt fid, const char *mName, int mdim) const
+void MEDFileUMeshSplitL1::write(med_idt fid, const std::string& mName, int mdim) const
{
- std::vector<MEDCouplingUMesh *> ms=_m_by_types->splitByType();
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
+ std::vector<MEDCoupling1GTUMesh *> ms(_m_by_types.getParts());
int start=0;
- for(std::vector<MEDCouplingUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
+ for(std::vector<MEDCoupling1GTUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
{
int nbCells=(*it)->getNumberOfCells();
int end=start+nbCells;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> fam,num;
- MEDCouplingAutoRefCountObjectPtr<DataArrayAsciiChar> names;
+ MCAuto<DataArrayInt> fam,num;
+ MCAuto<DataArrayAsciiChar> names;
if((const DataArrayInt *)_fam)
- fam=_fam->substr(start,end);
+ fam=_fam->subArray(start,end);
if((const DataArrayInt *)_num)
- num=_num->substr(start,end);
+ num=_num->subArray(start,end);
if((const DataArrayAsciiChar *)_names)
- names=static_cast<DataArrayAsciiChar *>(_names->substr(start,end));
- MEDFileUMeshPerType::write(fid,mName,mdim,(*it),fam,num,names);
+ names=static_cast<DataArrayAsciiChar *>(_names->subArray(start,end));
+ MEDFileUMeshPerType::Write(fid,mName,mdim,(*it),fam,num,names);
start=end;
}
}
-void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N) throw(INTERP_KERNEL::Exception)
+void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N)
{
- MEDCouplingUMesh *m(_m_by_types);
- if(!m)
- return;
- m->renumberNodesInConn(newNodeNumbersO2N);
+ _m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
+}
+
+void MEDFileUMeshSplitL1::serialize(std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI) const
+{
+ bigArraysI.push_back(_fam);
+ bigArraysI.push_back(_num);
+ _m_by_types.serialize(tinyInt,bigArraysI);
+}
+
+void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
+{
+ _fam=bigArraysI.back(); bigArraysI.pop_back();
+ _num=bigArraysI.back(); bigArraysI.pop_back();
+ _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
}
-void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId) throw(INTERP_KERNEL::Exception)
+void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
{
DataArrayInt *arr=_fam;
if(arr)
_fam=0;
return ;
}
- MEDCouplingUMesh *mbt(_m_by_types);
- if(!mbt)
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::setFamilyArr : no mesh defined on this level !");
- famArr->checkNbOfTuplesAndComp(mbt->getNumberOfCells(),1,"MEDFileUMeshSplitL1::setFamilyArr : Problem in size of Family arr ! ");
+ int sz(_m_by_types.getSize());
+ famArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setFamilyArr : Problem in size of Family arr ! ");
famArr->incrRef();
_fam=famArr;
}
+DataArrayInt *MEDFileUMeshSplitL1::getFamilyField()
+{
+ return _fam;
+}
+
void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
{
if(!renumArr)
_rev_num=0;
return ;
}
- MEDCouplingUMesh *mbt(_m_by_types);
- if(!mbt)
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::setRenumArr : no mesh defined on this level !");
- renumArr->checkNbOfTuplesAndComp(mbt->getNumberOfCells(),1,"MEDFileUMeshSplitL1::setRenumArr : Problem in size of numbering arr ! ");
+ int sz(_m_by_types.getSize());
+ renumArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setRenumArr : Problem in size of numbering arr ! ");
renumArr->incrRef();
_num=renumArr;
computeRevNum();
_names=0;
return ;
}
- MEDCouplingUMesh *mbt(_m_by_types);
- if(!mbt)
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::setNameArr : no mesh defined on this level !");
- nameArr->checkNbOfTuplesAndComp(mbt->getNumberOfCells(),MED_SNAME_SIZE,"MEDFileUMeshSplitL1::setNameArr : Problem in size of name arr ! ");
+ int sz(_m_by_types.getSize());
+ nameArr->checkNbOfTuplesAndComp(sz,MED_SNAME_SIZE,"MEDFileUMeshSplitL1::setNameArr : Problem in size of name arr ! ");
nameArr->incrRef();
_names=nameArr;
}
if(renum==0)
return m;
if(cellIds==0)
- m->renumberCells(renum->getConstPointer(),true);
+ m->renumberCells(renum->begin(),true);
else
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
- m->renumberCells(locnum->getConstPointer(),true);
+ MCAuto<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
+ m->renumberCells(locnum->begin(),true);
}
return m;
}
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
+{
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
+ ret->unserialize(name,coo,tinyInt,bigArraysI);
+ return ret.retn();
+}
+
MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
{
return Renumber2(_num,m,cellIds);
da->incrRef();
return const_cast<DataArrayInt *>(da);
}
- return renum->selectByTupleId(da->getConstPointer(),da->getConstPointer()+da->getNumberOfTuples());
+ return renum->selectByTupleId(da->begin(),da->end());
}
DataArrayInt *MEDFileUMeshSplitL1::renumIfNeededArr(const DataArrayInt *da) const
std::map<int,int>& famIdTrad, std::map<int,std::string>& newfams)
{
std::set<int> allfids;
-
+ //tony
}
void MEDFileUMeshSplitL1::computeRevNum() const
int maxValue=_num->getMaxValue(pos);
_rev_num=_num->invertArrayN2O2O2N(maxValue+1);
}
+
+//=
+
+MEDFileUMeshAggregateCompute::MEDFileUMeshAggregateCompute():_mp_time(0),_m_time(0)
+{
+}
+
+void MEDFileUMeshAggregateCompute::setName(const std::string& name)
+{
+ if(_m_time>=_mp_time)
+ {
+ MEDCouplingUMesh *um(_m);
+ if(um)
+ um->setName(name);
+ }
+ if(_mp_time>=_m_time)
+ {
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ MEDCoupling1GTUMesh *tmp(*it);
+ if(tmp)
+ tmp->setName(name);
+ }
+ }
+}
+
+void MEDFileUMeshAggregateCompute::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
+{
+ std::size_t sz(mParts.size());
+ std::vector< MCAuto<MEDCoupling1GTUMesh> > ret(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *elt(mParts[i]);
+ if(!elt)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignParts : presence of null pointer !");
+ ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt); elt->incrRef();
+ }
+ _m_parts=ret;
+ _part_def.clear(); _part_def.resize(sz);
+ _mp_time=std::max(_mp_time,_m_time)+1;
+ _m=0;
+}
+
+void MEDFileUMeshAggregateCompute::assignDefParts(const std::vector<const PartDefinition *>& partDefs)
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : the parts require a computation !");
+ std::size_t sz(partDefs.size());
+ if(_part_def.size()!=partDefs.size() || _part_def.size()!=_m_parts.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : sizes of vectors of part definition mismatch !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(partDefs[i]);
+ if(elt)
+ elt->incrRef();
+ _part_def[i]=const_cast<PartDefinition*>(elt);
+ }
+}
+
+void MEDFileUMeshAggregateCompute::assignUMesh(MEDCouplingUMesh *m)
+{
+ _m=m;
+ _m_parts.clear();
+ _m_time=std::max(_mp_time,_m_time)+1;
+}
+
+MEDCouplingUMesh *MEDFileUMeshAggregateCompute::getUmesh() const
+{
+ if(_mp_time<=_m_time)
+ return _m;
+ std::vector< const MEDCoupling1GTUMesh *> mp(_m_parts.size());
+ std::copy(_m_parts.begin(),_m_parts.end(),mp.begin());
+ _m=MEDCoupling1GTUMesh::AggregateOnSameCoordsToUMesh(mp);
+ _m_parts.clear();//to avoid memory peak !
+ _m_time=_mp_time+1;//+1 is important ! That is to say that only _m is OK not _m_parts because cleared !
+ return _m;
+}
+
+int MEDFileUMeshAggregateCompute::getNumberOfCells() const
+{
+ if(_mp_time<=_m_time)
+ return _m->getNumberOfCells();
+ int ret(0);
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ ret+=(*it)->getNumberOfCells();
+ return ret;
+}
+
+std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
+{
+ if(_mp_time>=_m_time)
+ {
+ std::size_t sz(_m_parts.size());
+ std::vector<INTERP_KERNEL::NormalizedCellType> ret(sz);
+ for(std::size_t i=0;i<sz;i++)
+ ret[i]=_m_parts[i]->getCellModelEnum();
+ return ret;
+ }
+ else
+ return _m->getAllGeoTypesSorted();
+}
+
+int MEDFileUMeshAggregateCompute::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ if(_mp_time>=_m_time)
+ {
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(elt && elt->getCellModelEnum()==ct)
+ return elt->getNumberOfCells();
+ }
+ return 0;
+ }
+ else
+ return _m->getNumberOfCellsWithType(ct);
+}
+
+std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartsWithoutComputation : the parts require a computation !");
+ //
+ std::vector<MEDCoupling1GTUMesh *> ret(_m_parts.size());
+ std::size_t i(0);
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt);
+ }
+ return ret;
+}
+
+std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::getParts() const
+{
+ if(_mp_time<_m_time)
+ forceComputationOfPartsFromUMesh();
+ return retrievePartsWithoutComputation();
+}
+
+MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::retrievePartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
+ std::size_t sz(v.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ if(v[i])
+ if(v[i]->getCellModelEnum()==gt)
+ return v[i];
+ }
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartWithoutComputation : the geometric type is not existing !");
+}
+
+void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, int& start, int& stop) const
+{
+ start=0; stop=0;
+ std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
+ std::size_t sz(v.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ if(v[i])
+ {
+ if(v[i]->getCellModelEnum()==gt)
+ {
+ stop=start+v[i]->getNumberOfCells();
+ return;
+ }
+ else
+ start+=v[i]->getNumberOfCells();
+ }
+ }
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation : the geometric type is not existing !");
+}
+
+void MEDFileUMeshAggregateCompute::renumberNodesInConnWithoutComputation(const int *newNodeNumbersO2N)
+{
+ if(_mp_time>_m_time)
+ {
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ MEDCoupling1GTUMesh *m(*it);
+ if(m)
+ m->renumberNodesInConn(newNodeNumbersO2N);
+ }
+ }
+ else
+ {
+ MEDCouplingUMesh *m(getUmesh());
+ if(!m)
+ return;
+ m->renumberNodesInConn(newNodeNumbersO2N);
+ }
+}
+
+void MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh() const
+{
+ const MEDCouplingUMesh *m(_m);
+ if(!m)
+ {
+ if(_m_parts.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ else
+ return ;// no needs to compte parts they are already here !
+ }
+ std::vector<MEDCouplingUMesh *> ms(m->splitByType());
+ std::vector< MCAuto<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
+ std::size_t sz(msMSafe.size());
+ _m_parts.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ _m_parts[i]=MEDCoupling1GTUMesh::New(ms[i]);
+ _part_def.clear();
+ _part_def.resize(_m_parts.size());
+ _mp_time=std::max(_mp_time,_m_time);
+}
+
+const PartDefinition *MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : the parts require a computation !");
+ if(_m_parts.size()!=_part_def.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : size of arrays are expected to be the same !");
+ std::size_t sz(_m_parts.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(mesh)
+ if(mesh->getCellModelEnum()==gt)
+ return _part_def[i];
+ }
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
+}
+
+void MEDFileUMeshAggregateCompute::serialize(std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
+ std::size_t sz(_m_parts.size());
+ tinyInt.push_back((int)sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
+ tinyInt.push_back(mesh->getCellModelEnum());
+ const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
+ const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
+ if(mesh1)
+ {
+ DataArrayInt *elt(mesh1->getNodalConnectivity());
+ if(elt)
+ elt->incrRef();
+ MCAuto<DataArrayInt> elt1(elt);
+ bigArraysI.push_back(elt1);
+ }
+ else if(mesh2)
+ {
+ DataArrayInt *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
+ if(elt1)
+ elt1->incrRef();
+ if(elt2)
+ elt2->incrRef();
+ MCAuto<DataArrayInt> elt11(elt1),elt22(elt2);
+ bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
+ const PartDefinition *pd(_part_def[i]);
+ if(!pd)
+ tinyInt.push_back(-1);
+ else
+ {
+ std::vector<int> tinyTmp;
+ pd->serialize(tinyTmp,bigArraysI);
+ tinyInt.push_back((int)tinyTmp.size());
+ tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
+ }
+ }
+}
+
+void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
+{
+ int nbParts(tinyInt.back()); tinyInt.pop_back();
+ _part_def.clear(); _part_def.resize(nbParts);
+ _m_parts.clear(); _m_parts.resize(nbParts);
+ for(int i=0;i<nbParts;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
+ MCAuto<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
+ mesh->setCoords(coo);
+ MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ if(mesh1)
+ {
+ mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
+ }
+ else if(mesh2)
+ {
+ MCAuto<DataArrayInt> elt0,elt1;
+ elt0=bigArraysI.back(); bigArraysI.pop_back();
+ elt1=bigArraysI.back(); bigArraysI.pop_back();
+ mesh2->setNodalConnectivity(elt0,elt1);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
+ _m_parts[i]=mesh;
+ int pdid(tinyInt.back()); tinyInt.pop_back();
+ if(pdid!=-1)
+ _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
+ _mp_time=std::max(_mp_time,_m_time)+1;
+ }
+}
+
+/*!
+ * This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
+ */
+bool MEDFileUMeshAggregateCompute::isStoredSplitByType() const
+{
+ return _mp_time>=_m_time;
+}
+
+std::size_t MEDFileUMeshAggregateCompute::getTimeOfThis() const
+{
+ if(_mp_time>_m_time)
+ return getTimeOfParts();
+ if(_m_time>_mp_time)
+ return getTimeOfUMesh();
+ return std::max(getTimeOfParts(),getTimeOfUMesh());
+}
+
+std::size_t MEDFileUMeshAggregateCompute::getTimeOfParts() const
+{
+ std::size_t ret(0);
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(!elt)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : null obj in parts !");
+ ret=std::max(ret,elt->getTimeOfThis());
+ }
+ if(ret==0)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : parts is empty !");
+ return ret;
+}
+
+std::size_t MEDFileUMeshAggregateCompute::getTimeOfUMesh() const
+{
+ const MEDCouplingUMesh *m(_m);
+ if(!m)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfUMesh : unmesh is null !");
+ return m->getTimeOfThis();
+}
+
+std::size_t MEDFileUMeshAggregateCompute::getHeapMemorySizeWithoutChildren() const
+{
+ std::size_t ret(_m_parts.size()*sizeof(MCAuto<MEDCoupling1GTUMesh>));
+ return ret;
+}
+
+std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
+{
+ std::vector<const BigMemoryObject *> ret;
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ ret.push_back((const MEDCoupling1GTUMesh *)*it);
+ ret.push_back((const MEDCouplingUMesh *)_m);
+ return ret;
+}
+
+MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCopy(DataArrayDouble *coords) const
+{
+ MEDFileUMeshAggregateCompute ret;
+ ret._m_parts.resize(_m_parts.size());
+ for(std::size_t i=0;i<_m_parts.size();i++)
+ {
+ const MEDCoupling1GTUMesh *elt(_m_parts[i]);
+ if(elt)
+ {
+ ret._m_parts[i]=static_cast<MEDCoupling::MEDCoupling1GTUMesh*>(elt->deepCopy());
+ ret._m_parts[i]->setCoords(coords);
+ }
+ }
+ ret._mp_time=_mp_time; ret._m_time=_m_time;
+ if((const MEDCouplingUMesh *)_m)
+ {
+ ret._m=static_cast<MEDCoupling::MEDCouplingUMesh*>(_m->deepCopy());
+ ret._m->setCoords(coords);
+ }
+ std::size_t sz(_part_def.size());
+ ret._part_def.clear(); ret._part_def.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(_part_def[i]);
+ if(elt)
+ ret._part_def[i]=elt->deepCopy();
+ }
+ return ret;
+}
+
+void MEDFileUMeshAggregateCompute::shallowCpyMeshes()
+{
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(elt)
+ {
+ MCAuto<MEDCouplingMesh> elt2(elt->clone(false));
+ *it=DynamicCastSafe<MEDCouplingMesh,MEDCoupling1GTUMesh>(elt2);
+ }
+ }
+ const MEDCouplingUMesh *m(_m);
+ if(m)
+ _m=m->clone(false);
+}
+
+bool MEDFileUMeshAggregateCompute::isEqual(const MEDFileUMeshAggregateCompute& other, double eps, std::string& what) const
+{
+ const MEDCouplingUMesh *m1(getUmesh());
+ const MEDCouplingUMesh *m2(other.getUmesh());
+ if((m1==0 && m2!=0) || (m1!=0 && m2==0))
+ {
+ what="Presence of mesh in one sublevel and not in other!";
+ return false;
+ }
+ if(m1)
+ {
+ std::string what2;
+ if(!m1->isEqualIfNotWhy(m2,eps,what2))
+ {
+ what=std::string("meshes at a sublevel are not deeply equal (")+what2+std::string(")!");
+ return false;
+ }
+ }
+ std::size_t sz(_part_def.size());
+ if(sz!=other._part_def.size())
+ {
+ what=std::string("number of subdivision per geo type for part definition is not the same !");
+ return false;
+ }
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
+ if(!pd0 && !pd1)
+ continue;
+ if((!pd0 && pd1) || (pd0 && !pd1))
+ {
+ what=std::string("a cell part def is defined only for one among this or other !");
+ return false;
+ }
+ bool ret(pd0->isEqual(pd1,what));
+ if(!ret)
+ return false;
+ }
+ return true;
+}
+
+void MEDFileUMeshAggregateCompute::checkConsistency() const
+{
+ if(_mp_time >= _m_time)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();
+ it!=_m_parts.end(); it++)
+ (*it)->checkConsistency();
+ else
+ _m->checkConsistency();
+}
+
+void MEDFileUMeshAggregateCompute::clearNonDiscrAttributes() const
+{
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ MEDFileUMeshSplitL1::ClearNonDiscrAttributes(*it);
+ MEDFileUMeshSplitL1::ClearNonDiscrAttributes(_m);
+}
+
+void MEDFileUMeshAggregateCompute::synchronizeTinyInfo(const MEDFileMesh& master) const
+{
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *tmp(*it);
+ if(tmp)
+ {
+ (const_cast<MEDCoupling1GTUMesh *>(tmp))->setName(master.getName().c_str());
+ (const_cast<MEDCoupling1GTUMesh *>(tmp))->setDescription(master.getDescription().c_str());
+ (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
+ (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTimeUnit(master.getTimeUnit());
+ }
+ }
+ const MEDCouplingUMesh *m(_m);
+ if(m)
+ {
+ (const_cast<MEDCouplingUMesh *>(m))->setName(master.getName().c_str());
+ (const_cast<MEDCouplingUMesh *>(m))->setDescription(master.getDescription().c_str());
+ (const_cast<MEDCouplingUMesh *>(m))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
+ (const_cast<MEDCouplingUMesh *>(m))->setTimeUnit(master.getTimeUnit());
+ }
+}
+
+bool MEDFileUMeshAggregateCompute::empty() const
+{
+ if(_mp_time<_m_time)
+ return ((const MEDCouplingUMesh *)_m)==0;
+ //else _mp_time>=_m_time)
+ return _m_parts.empty();
+}
+
+int MEDFileUMeshAggregateCompute::getMeshDimension() const
+{
+ if(_mp_time<_m_time)
+ {
+ const MEDCouplingUMesh *m(_m);
+ if(!m)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : no umesh in this !");
+ return m->getMeshDimension();
+ }
+ else
+ {
+ if(_m_parts.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh is empty !");
+ const MEDCoupling1GTUMesh *m(_m_parts[0]);
+ if(!m)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh contains null instance !");
+ return m->getMeshDimension();
+ }
+}
+
+std::vector<int> MEDFileUMeshAggregateCompute::getDistributionOfTypes() const
+{
+ if(_mp_time<_m_time)
+ {
+ const MEDCouplingUMesh *m(_m);
+ if(!m)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : no umesh in this !");
+ return m->getDistributionOfTypes();
+ }
+ else
+ {
+ std::vector<int> ret;
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *tmp(*it);
+ if(!tmp)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : part mesh contains null instance !");
+ std::vector<int> ret0(tmp->getDistributionOfTypes());
+ ret.insert(ret.end(),ret0.begin(),ret0.end());
+ }
+ return ret;
+ }
+}
+
+int MEDFileUMeshAggregateCompute::getSize() const
+{
+ if(_mp_time<_m_time)
+ {
+ const MEDCouplingUMesh *m(_m);
+ if(!m)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : no umesh in this !");
+ return m->getNumberOfCells();
+ }
+ else
+ {
+ int ret=0;
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *m(*it);
+ if(!m)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : part mesh contains null instance !");
+ ret+=m->getNumberOfCells();
+ }
+ return ret;
+ }
+}
+
+void MEDFileUMeshAggregateCompute::setCoords(DataArrayDouble *coords)
+{
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ MEDCoupling1GTUMesh *tmp(*it);
+ if(tmp)
+ (*it)->setCoords(coords);
+ }
+ MEDCouplingUMesh *m(_m);
+ if(m)
+ m->setCoords(coords);
+}
+
+MEDFileEltStruct4Mesh *MEDFileEltStruct4Mesh::New(med_idt fid, const std::string& mName, int dt, int it, int iterOnStEltOfMesh, MEDFileMeshReadSelector *mrs)
+{
+ return new MEDFileEltStruct4Mesh(fid,mName,dt,it,iterOnStEltOfMesh,mrs);
+}
+
+std::size_t MEDFileEltStruct4Mesh::getHeapMemorySizeWithoutChildren() const
+{
+ return _geo_type_name.capacity()+_vars.capacity()*sizeof(MCAuto<DataArray>);
+}
+
+std::vector<const MEDCoupling::BigMemoryObject*> MEDFileEltStruct4Mesh::getDirectChildrenWithNull() const
+{
+ std::vector<const MEDCoupling::BigMemoryObject*> ret;
+ ret.push_back(_conn);
+ ret.push_back(_common);
+ for(std::vector< MCAuto<DataArray> >::const_iterator it=_vars.begin();it!=_vars.end();it++)
+ ret.push_back(*it);
+ return ret;
+}
+
+MEDFileEltStruct4Mesh::MEDFileEltStruct4Mesh(med_idt fid, const std::string& mName, int dt, int it, int iterOnStEltOfMesh, MEDFileMeshReadSelector *mrs)
+{
+ med_geometry_type geoType;
+ INTERP_KERNEL::AutoPtr<char> geoTypeName(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
+ MEDFILESAFECALLERRD0(MEDmeshEntityInfo,(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,iterOnStEltOfMesh+1,geoTypeName,&geoType));
+ _geo_type=geoType;
+ _geo_type_name=MEDLoaderBase::buildStringFromFortran(geoTypeName,MED_NAME_SIZE);
+ int nCells(0);
+ {
+ med_bool chgt=MED_FALSE,trsf=MED_FALSE;
+ nCells=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,geoType,MED_CONNECTIVITY,MED_NODAL,&chgt,&trsf);
+ }
+ MCAuto<MEDFileMeshSupports> mss(MEDFileMeshSupports::New(fid));
+ MCAuto<MEDFileStructureElements> mse(MEDFileStructureElements::New(fid,mss));
+ int nbEntities(mse->getNumberOfNodesPerSE(_geo_type_name));
+ _conn=DataArrayInt::New(); _conn->alloc(nCells*nbEntities);
+ MEDFILESAFECALLERRD0(MEDmeshElementConnectivityRd,(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,_geo_type,MED_NODAL,MED_FULL_INTERLACE,_conn->getPointer()));
+ _conn->applyLin(1,-1);
+ _conn->rearrange(nbEntities);
+ _common=MEDFileUMeshPerTypeCommon::New();
+ _common->loadCommonPart(fid,mName.c_str(),dt,it,nCells,geoType,MED_STRUCT_ELEMENT,mrs);
+ std::vector<std::string> vns(mse->getVarAttsOf(_geo_type_name));
+ std::size_t sz(vns.size());
+ _vars.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDFileSEVarAtt *var(mse->getVarAttOf(_geo_type_name,vns[i]));
+ MCAuto<DataArray> gen(var->getGenerator());
+ MCAuto<DataArray> arr(gen->buildNewEmptyInstance());
+ arr->alloc(nCells,var->getNbOfComponents());
+ arr->setName(vns[i]);
+ MEDFILESAFECALLERRD0(MEDmeshStructElementVarAttRd,(fid,mName.c_str(),dt,it,_geo_type,vns[i].c_str(),arr->getVoidStarPointer()));
+ _vars[i]=arr;
+ }
+}
