-// Copyright (C) 2007-2014 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2016 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "MEDFileMeshLL.hxx"
#include "MEDFileMesh.hxx"
#include "MEDLoaderBase.hxx"
+#include "MEDFileSafeCaller.txx"
#include "MEDFileMeshReadSelector.hxx"
#include "MEDCouplingUMesh.hxx"
#include "CellModel.hxx"
#include <set>
+#include <iomanip>
extern med_geometry_type typmai[MED_N_CELL_FIXED_GEO];
extern INTERP_KERNEL::NormalizedCellType typmai2[MED_N_CELL_FIXED_GEO];
extern med_geometry_type typmainoeud[1];
-using namespace ParaMEDMEM;
+using namespace MEDCoupling;
+
+const char MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS[]="!/__\\!";//important start by - because ord('!')==33 the smallest (!=' ') to preserve orders at most.
+
+int MEDFileMeshL2::ZE_SEP2_FOR_FAMILY_KILLERS=4;
MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
{
return std::vector<const BigMemoryObject *>();
}
-int MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mname, ParaMEDMEM::MEDCouplingMeshType& meshType, int& dt, int& it, std::string& dtunit1)
+int MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mname, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& dt, int& it, std::string& dtunit1)
{
med_mesh_type type_maillage;
char maillage_description[MED_COMMENT_SIZE+1];
med_axis_type axistype;
for(int i=0;i<n && !found;i++)
{
- int naxis=MEDmeshnAxis(fid,i+1);
+ int naxis(MEDmeshnAxis(fid,i+1));
INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
- MEDmeshInfo(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit);
+ MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
std::string cur=MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa));
ms.push_back(cur);
std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
+ axType=TraduceAxisType(axistype);
switch(type_maillage)
{
case MED_UNSTRUCTURED_MESH:
case MED_STRUCTURED_MESH:
{
med_grid_type gt;
- MEDmeshGridTypeRd(fid,mname.c_str(),>);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mname.c_str(),>));
switch(gt)
{
case MED_CARTESIAN_GRID:
case MED_CURVILINEAR_GRID:
meshType=CURVE_LINEAR;
break;
+ case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
+ meshType=CARTESIAN;
+ break;
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
}
break;
}
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
}
med_int numdt,numit;
med_float dtt;
- MEDmeshComputationStepInfo(fid,mname.c_str(),1,&numdt,&numit,&dtt);
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mname.c_str(),1,&numdt,&numit,&dtt));
dt=numdt; it=numit;
return ret;
}
std::vector< std::pair<int,int> > p(nstep);
for(int i=0;i<nstep;i++)
{
- MEDmeshComputationStepInfo(fid,mName.c_str(),i+1,&numdt,&numit,&dtt);
- p[i]=std::make_pair<int,int>(numdt,numit);
- found=(numdt==dt) && (numit==numit);
+ MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
+ p[i]=std::make_pair((int)numdt,(int)numit);
+ found=(numdt==dt) && (numit==it);
+ if (found) break;
}
if(!found)
{
return dtt;
}
-std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, int mId, const std::string& mName, ParaMEDMEM::MEDCouplingMeshType& meshType, int& nstep, int& Mdim)
+/*!
+ * non static and non const method because _description, _dt_unit... are set in this method.
+ */
+std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, int mId, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim)
{
med_mesh_type type_maillage;
med_int spaceDim;
med_sorting_type stype;
med_axis_type axistype;
- int naxis=MEDmeshnAxis(fid,mId);
+ int naxis(MEDmeshnAxis(fid,mId));
INTERP_KERNEL::AutoPtr<char> nameTmp=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
if(MEDmeshInfo(fid,mId,nameTmp,&spaceDim,&Mdim,&type_maillage,_description.getPointer(),_dt_unit.getPointer(),
&stype,&nstep,&axistype,axisname,axisunit)!=0)
throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
- MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());
+ MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
+ axType=TraduceAxisType(axistype);
switch(type_maillage)
{
case MED_UNSTRUCTURED_MESH:
case MED_STRUCTURED_MESH:
{
med_grid_type gt;
- MEDmeshGridTypeRd(fid,mName.c_str(),>);
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
switch(gt)
{
case MED_CARTESIAN_GRID:
case MED_CURVILINEAR_GRID:
meshType=CURVE_LINEAR;
break;
+ case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
+ meshType=CARTESIAN;
+ break;
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
}
break;
}
default:
- throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
}
//
std::vector<std::string> infosOnComp(naxis);
char nomfam[MED_NAME_SIZE+1];
med_int numfam;
int nfam=MEDnFamily(fid,meshName.c_str());
+ std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(nfam);
for(int i=0;i<nfam;i++)
{
int ngro=MEDnFamilyGroup(fid,meshName.c_str(),i+1);
INTERP_KERNEL::AutoPtr<char> attdes=new char[MED_COMMENT_SIZE*natt+1];
INTERP_KERNEL::AutoPtr<char> gro=new char[MED_LNAME_SIZE*ngro+1];
MEDfamily23Info(fid,meshName.c_str(),i+1,nomfam,attide,attval,attdes,&numfam,gro);
- std::string famName=MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE);
- fams[famName]=numfam;
+ std::string famName(MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE));
+ std::vector<std::string> grps(ngro);
for(int j=0;j<ngro;j++)
- {
- std::string groupname=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
- grps[groupname].push_back(famName);
- }
+ grps[j]=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
+ crudeFams[i]=std::pair<std::string,std::pair<int,std::vector<std::string> > >(famName,std::pair<int,std::vector<std::string> >(numfam,grps));
+ }
+ RenameFamiliesFromFileToMemInternal(crudeFams);
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it0=crudeFams.begin();it0!=crudeFams.end();it0++)
+ {
+ fams[(*it0).first]=(*it0).second.first;
+ for(std::vector<std::string>::const_iterator it1=(*it0).second.second.begin();it1!=(*it0).second.second.end();it1++)
+ grps[*it1].push_back((*it0).first);
}
}
void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const std::string& mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
{
- for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++)
+ std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(fams.size());
+ std::size_t ii(0);
+ for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++,ii++)
{
std::vector<std::string> grpsOfFam;
for(std::map<std::string, std::vector<std::string> >::const_iterator it1=grps.begin();it1!=grps.end();it1++)
if(std::find((*it1).second.begin(),(*it1).second.end(),(*it).first)!=(*it1).second.end())
grpsOfFam.push_back((*it1).first);
}
- int ngro=grpsOfFam.size();
+ crudeFams[ii]=std::pair<std::string,std::pair<int,std::vector<std::string> > >((*it).first,std::pair<int,std::vector<std::string> >((*it).second,grpsOfFam));
+ }
+ RenameFamiliesFromMemToFileInternal(crudeFams);
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++)
+ {
+ int ngro((*it).second.second.size());
INTERP_KERNEL::AutoPtr<char> groName=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE*ngro);
int i=0;
- for(std::vector<std::string>::const_iterator it2=grpsOfFam.begin();it2!=grpsOfFam.end();it2++,i++)
+ for(std::vector<std::string>::const_iterator it2=(*it).second.second.begin();it2!=(*it).second.second.end();it2++,i++)
MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE-1,groName+i*MED_LNAME_SIZE,tooLongStrPol);
INTERP_KERNEL::AutoPtr<char> famName=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
MEDLoaderBase::safeStrCpy((*it).first.c_str(),MED_NAME_SIZE,famName,tooLongStrPol);
- int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second,ngro,groName);
+ int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second.first,ngro,groName);
ret++;
}
}
+void MEDFileMeshL2::RenameFamiliesPatternInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams, RenameFamiliesPatternFunc func)
+{
+ std::size_t ii(0);
+ std::vector<std::string> fams(crudeFams.size());
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
+ fams[ii]=(*it).first;
+ if(!func(fams))
+ return ;
+ ii=0;
+ for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
+ (*it).first=fams[ii];
+}
+
+/*!
+ * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
+ * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
+ */
+void MEDFileMeshL2::RenameFamiliesFromFileToMemInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
+{
+ RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromFileToMem);
+}
+
+bool MEDFileMeshL2::RenameFamiliesFromFileToMem(std::vector< std::string >& famNames)
+{
+ std::map<std::string,int> m;
+ std::set<std::string> s;
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ if(s.find(*it)!=s.end())
+ m[*it]=0;
+ s.insert(*it);
+ }
+ if(m.empty())
+ return false;// the general case !
+ for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::map<std::string,int>::iterator it2(m.find(*it));
+ if(it2!=m.end())
+ {
+ std::ostringstream oss; oss << *it << ZE_SEP_FOR_FAMILY_KILLERS << std::setfill('0') << std::setw(ZE_SEP2_FOR_FAMILY_KILLERS) << (*it2).second++;
+ *it=oss.str();
+ }
+ }
+ return true;
+}
+
+/*!
+ * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
+ * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
+ */
+void MEDFileMeshL2::RenameFamiliesFromMemToFileInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
+{
+ RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromMemToFile);
+}
+
+bool MEDFileMeshL2::RenameFamiliesFromMemToFile(std::vector< std::string >& famNames)
+{
+ bool isSmthingStrange(false);
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
+ if(found!=std::string::npos)
+ isSmthingStrange=true;
+ }
+ if(!isSmthingStrange)
+ return false;
+ // pattern matching
+ std::map< std::string, std::vector<std::string> > m;
+ for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
+ if(found!=std::string::npos && found>=1)
+ {
+ std::string s1((*it).substr(found+sizeof(ZE_SEP_FOR_FAMILY_KILLERS)-1));
+ if(s1.size()!=ZE_SEP2_FOR_FAMILY_KILLERS)
+ continue;
+ int k(-1);
+ std::istringstream iss(s1);
+ iss >> k;
+ bool isOK((iss.rdstate() & ( std::istream::failbit | std::istream::eofbit)) == std::istream::eofbit);
+ if(isOK && k>=0)
+ {
+ std::string s0((*it).substr(0,found));
+ m[s0].push_back(*it);
+ }
+ }
+ }
+ if(m.empty())
+ return false;
+ // filtering
+ std::map<std::string,std::string> zeMap;
+ for(std::map< std::string, std::vector<std::string> >::const_iterator it=m.begin();it!=m.end();it++)
+ {
+ if((*it).second.size()==1)
+ continue;
+ for(std::vector<std::string>::const_iterator it1=(*it).second.begin();it1!=(*it).second.end();it1++)
+ zeMap[*it1]=(*it).first;
+ }
+ if(zeMap.empty())
+ return false;
+ // traduce
+ for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
+ {
+ std::map<std::string,std::string>::iterator it1(zeMap.find(*it));
+ if(it1!=zeMap.end())
+ *it=(*it1).second;
+ }
+ return true;
+}
+
+MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisType(med_axis_type at)
+{
+ switch(at)
+ {
+ case MED_CARTESIAN:
+ return AX_CART;
+ case MED_CYLINDRICAL:
+ return AX_CYL;
+ case MED_SPHERICAL:
+ return AX_SPHER;
+ case MED_UNDEF_AXIS_TYPE:
+ return AX_CART;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisType : unrecognized axis type !");
+ }
+}
+
+MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisTypeStruct(med_grid_type gt)
+{
+ switch(gt)
+ {
+ case MED_CARTESIAN_GRID:
+ return AX_CART;
+ case MED_POLAR_GRID:
+ return AX_CYL;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeStruct : only Cartesian and Cylindrical supported by MED file !");
+ }
+}
+
+med_axis_type MEDFileMeshL2::TraduceAxisTypeRev(MEDCoupling::MEDCouplingAxisType at)
+{
+ switch(at)
+ {
+ case AX_CART:
+ return MED_CARTESIAN;
+ case AX_CYL:
+ return MED_CYLINDRICAL;
+ case AX_SPHER:
+ return MED_SPHERICAL;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRev : unrecognized axis type !");
+ }
+}
+
+med_grid_type MEDFileMeshL2::TraduceAxisTypeRevStruct(MEDCoupling::MEDCouplingAxisType at)
+{
+ switch(at)
+ {
+ case AX_CART:
+ return MED_CARTESIAN_GRID;
+ case AX_CYL:
+ return MED_POLAR_GRID;
+ case AX_SPHER:
+ return MED_POLAR_GRID;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRevStruct : unrecognized axis type !");
+ }
+}
+
MEDFileUMeshL2::MEDFileUMeshL2()
{
}
Mdim=-3;
_name.set(mName.c_str());
int nstep;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,nstep,Mdim));
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
if(nstep==0)
{
Mdim=-4;
med_bool changement,transformation;
int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
std::vector<bool> fetchedNodeIds(nCoords,false);
- for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
(*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
int nMin(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true)));
int nMax(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true)));
nMax=nCoords-nMax;
- for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
(*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
loadPartCoords(fid,mId,infosOnComp,mName,dt,it,nMin,nMax);
}
for(std::size_t ii=0;ii<nbOfTypes;ii++)
{
int strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
+ MCAuto<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
_per_type_mesh[0].push_back(tmp);
}
sortTypes();
_coords=DataArrayDouble::New();
_coords->alloc(nCoords,spaceDim);
double *coordsPtr(_coords->getPointer());
- MEDmeshNodeCoordinateRd(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr);
+ if (nCoords)
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
_fam_coords=DataArrayInt::New();
_fam_coords->alloc(nCoords,1);
- MEDmeshEntityFamilyNumberRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer()));
}
else
_fam_coords=0;
{
_num_coords=DataArrayInt::New();
_num_coords->alloc(nCoords,1);
- MEDmeshEntityNumberRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer()));
}
else
_num_coords=0;
{
_name_coords=DataArrayAsciiChar::New();
_name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- MEDmeshEntityNameRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
_name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
}
else
MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
/*start*/nMin+1,/*stride*/1,/*count*/1,/*blocksize*/nbNodesToLoad,
/*lastblocksize=useless because count=1*/0,&filter);
- MEDmeshNodeCoordinateAdvancedRd(fid,mName.c_str(),dt,it,&filter,_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
_part_coords=PartDefinition::New(nMin,nMax,1);
MEDfilterClose(&filter);
MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
{
_fam_coords=DataArrayInt::New();
_fam_coords->alloc(nbNodesToLoad,1);
- MEDmeshEntityAttributeAdvancedRd(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer()));
}
else
_fam_coords=0;
{
_num_coords=DataArrayInt::New();
_num_coords->alloc(nbNodesToLoad,1);
- MEDmeshEntityAttributeAdvancedRd(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer()));
}
else
_num_coords=0;
{
_name_coords=DataArrayAsciiChar::New();
_name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- MEDmeshEntityAttributeAdvancedRd(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
_name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
}
else
void MEDFileUMeshL2::sortTypes()
{
std::set<int> mdims;
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
+ std::vector< MCAuto<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
_per_type_mesh.clear();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
mdims.insert((*it)->getDim());
if(mdims.empty())
return;
_per_type_mesh.resize(mdim+1);
for(int dim=mdim+1;dim!=0;dim--)
{
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
+ std::vector< MCAuto<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
if((*it)->getDim()==dim-1)
elt.push_back(*it);
}
// suppression of contiguous empty levels at the end of _per_type_mesh.
int nbOfUselessLev=0;
bool isFirst=true;
- for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
+ for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
{
if((*it2).empty() && isFirst)
{
{
if(!coords)
return ;
- MEDmeshNodeCoordinateWr(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer()));
if(famCoords)
- MEDmeshEntityFamilyNumberWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer()));
if(numCoords)
- MEDmeshEntityNumberWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer()));
if(nameCoords)
{
if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer()));
}
}
bool MEDFileUMeshL2::isFamDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getFam()==0)
return false;
return true;
bool MEDFileUMeshL2::isNumDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getNum()==0)
return false;
return true;
bool MEDFileUMeshL2::isNamesDefinedOnLev(int levId) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
if((*it)->getNames()==0)
return false;
return true;
}
-MEDFileCMeshL2::MEDFileCMeshL2()
+MEDFileCMeshL2::MEDFileCMeshL2():_ax_type(AX_CART)
{
}
_name.set(mName.c_str());
int nstep;
int Mdim;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,nstep,Mdim);
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim);
if(meshType!=CARTESIAN)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
_time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
_order=it;
//
med_grid_type gridtype;
- MEDmeshGridTypeRd(fid,mName.c_str(),&gridtype);
- if(gridtype!=MED_CARTESIAN_GRID)
- throw INTERP_KERNEL::Exception("Invalid structured mesh ! Expected cartesian mesh type !");
+ MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
+ if(gridtype!=MED_CARTESIAN_GRID && gridtype!=MED_POLAR_GRID)
+ throw INTERP_KERNEL::Exception("Invalid rectilinear mesh ! Only cartesian and polar are supported !");
+ _ax_type=TraduceAxisTypeStruct(gridtype);
_cmesh=MEDCouplingCMesh::New();
for(int i=0;i<Mdim;i++)
{
med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbOfElt=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf);
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
+ int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
+ MCAuto<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbOfElt,1);
da->setInfoOnComponent(0,infosOnComp[i]);
- MEDmeshGridIndexCoordinateRd(fid,mName.c_str(),dt,it,i+1,da->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
_cmesh->setCoordsAt(i,da);
}
}
_name.set(mName.c_str());
int nstep;
int Mdim;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,dummy3,nstep,Mdim);
if(meshType!=CURVE_LINEAR)
throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
_time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
//
_clmesh=MEDCouplingCurveLinearMesh::New();
INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
- MEDmeshGridStructRd(fid,mName.c_str(),dt,it,stGrid);
+ MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,stGrid));
_clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbNodes=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf);
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
+ int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
+ MCAuto<DataArrayDouble> da=DataArrayDouble::New();
da->alloc(nbNodes,infosOnComp.size());
da->setInfoOnComponents(infosOnComp);
- MEDmeshNodeCoordinateRd(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
_clmesh->setCoords(da);
}
if((MEDCouplingUMesh *)_m==0)
{
updateTime();
- _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCpy());
+ _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
_m->renumberCells(_st->_num->getConstPointer(),true);
return _m.retn();
}
else
{
updateTime();
- _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCpy());
+ _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
_m->renumberCells(_st->_num->getConstPointer(),true);
return _m.retn();
}
MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const std::string& mName, int id):_m(this)
{
- const std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& v=l2.getLev(id);
+ const std::vector< MCAuto<MEDFileUMeshPerType> >& v=l2.getLev(id);
if(v.empty())
return;
int sz=v.size();
for(int i=0;i<sz;i++)
{
MEDCoupling1GTUMesh *elt(v[i]->getMesh());
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=l2.getCoords();
+ MCAuto<DataArrayDouble> tmp2=l2.getCoords();
elt->setCoords(tmp2);
ms[i]=elt;
pds[i]=v[i]->getPartDef();
return ret;
}
-MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCpy(DataArrayDouble *coords) const
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::shallowCpyUsingCoords(DataArrayDouble *coords) const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret=new MEDFileUMeshSplitL1(*this);
- ret->_m_by_types=_m_by_types.deepCpy(coords);
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
+ ret->_m_by_types.shallowCpyMeshes();
+ ret->_m_by_types.setCoords(coords);
+ return ret.retn();
+}
+
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCopy(DataArrayDouble *coords) const
+{
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
+ ret->_m_by_types=_m_by_types.deepCopy(coords);
if((const DataArrayInt *)_fam)
- ret->_fam=_fam->deepCpy();
+ ret->_fam=_fam->deepCopy();
if((const DataArrayInt *)_num)
- ret->_num=_num->deepCpy();
+ ret->_num=_num->deepCopy();
if((const DataArrayInt *)_rev_num)
- ret->_rev_num=_rev_num->deepCpy();
+ ret->_rev_num=_rev_num->deepCopy();
if((const DataArrayAsciiChar *)_names)
- ret->_names=_names->deepCpy();
+ ret->_names=_names->deepCopy();
return ret.retn();
}
+void MEDFileUMeshSplitL1::checkConsistency() const
+{
+ if (!_fam || _fam->getNumberOfTuples() != getSize())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): internal family array has an invalid size!");
+ int nbCells = getSize();
+ if (_num)
+ {
+ _num->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array!");
+ int pos;
+ int maxValue=_num->getMaxValue(pos);
+ if (!_rev_num || _rev_num->getNumberOfTuples() != (maxValue+1))
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal revert node numbering array!");
+ }
+ if ((_num && !_rev_num) || (!_num && _rev_num))
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal numbering arrays (one is null)!");
+ if (_num && !_num->hasUniqueValues())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array: duplicates found!");
+ if (_names)
+ _names->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): internal cell naming array has an invalid size!");
+
+ _m_by_types.checkConsistency();
+}
+
bool MEDFileUMeshSplitL1::isEqual(const MEDFileUMeshSplitL1 *other, double eps, std::string& what) const
{
if(!_m_by_types.isEqual(other->_m_by_types,eps,what))
{
m->incrRef();
_m=m;
- _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCpy()));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
- if(!da->isIdentity())
+ _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCopy()));
+ MCAuto<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
+ if(!da->isIota(m->getNumberOfCells()))
{
_num=da->invertArrayO2N2N2O(m->getNumberOfCells());
_m.updateTime();
else
{
if(!m->checkConsecutiveCellTypesAndOrder(typmai2,typmai2+MED_N_CELL_FIXED_GEO))
- throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh : the mode of mesh setting expects to follow the MED file numbering convention ! it is not the case !");
+ throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh(): the mesh does not follow the MED file numbering convention! Invoke sortCellsInMEDFileFrmt() first!");
m->incrRef();
_m_by_types.assignUMesh(m);
}
assignCommonPart();
}
+MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
+{
+}
+
void MEDFileUMeshSplitL1::assignCommonPart()
{
_fam=DataArrayInt::New();
MEDCouplingUMesh *MEDFileUMeshSplitL1::getFamilyPart(const int *idsBg, const int *idsEnd, bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> eltsToKeep=_fam->getIdsEqualList(idsBg,idsEnd);
+ MCAuto<DataArrayInt> eltsToKeep=_fam->findIdsEqualList(idsBg,idsEnd);
MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types.getUmesh()->buildPartOfMySelf(eltsToKeep->getConstPointer(),eltsToKeep->getConstPointer()+eltsToKeep->getNumberOfTuples(),true);
if(renum)
return renumIfNeeded(m,eltsToKeep->getConstPointer());
DataArrayInt *MEDFileUMeshSplitL1::getFamilyPartArr(const int *idsBg, const int *idsEnd, bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_fam->getIdsEqualList(idsBg,idsEnd);
+ MCAuto<DataArrayInt> da=_fam->findIdsEqualList(idsBg,idsEnd);
if(renum)
return renumIfNeededArr(da);
return da.retn();
return _m_by_types.getGeoTypes();
}
+int MEDFileUMeshSplitL1::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ return _m_by_types.getNumberOfCellsWithType(ct);
+}
+
MEDCouplingUMesh *MEDFileUMeshSplitL1::getWholeMesh(bool renum) const
{
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp;
+ MCAuto<MEDCouplingUMesh> tmp;
if(renum && ((const DataArrayInt *)_num))
tmp=_m;
else
return tmp.retn();
}
+int MEDFileUMeshSplitL1::getNumberOfCells() const
+{
+ return _m_by_types.getNumberOfCells();
+}
+
DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
{
const DataArrayInt *fam(_fam);
return 0;
int start(0),stop(0);
_m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
- return fam->selectByTupleId2(start,stop,1);
+ return fam->selectByTupleIdSafeSlice(start,stop,1);
}
DataArrayInt *MEDFileUMeshSplitL1::extractNumberFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
return 0;
int start(0),stop(0);
_m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
- return num->selectByTupleId2(start,stop,1);
+ return num->selectByTupleIdSafeSlice(start,stop,1);
}
DataArrayInt *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField()
{
std::vector< DataArrayInt * > corr;
_m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
+ std::vector< MCAuto<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
std::vector< std::vector<int> > fidsOfGroups;
std::vector< const DataArrayInt * > corr2(corr.begin(),corr.end());
_fam=DataArrayInt::MakePartition(corr2,((MEDCouplingUMesh *)_m)->getNumberOfCells(),fidsOfGroups);
{
int nbCells=(*it)->getNumberOfCells();
int end=start+nbCells;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> fam,num;
- MEDCouplingAutoRefCountObjectPtr<DataArrayAsciiChar> names;
+ MCAuto<DataArrayInt> fam,num;
+ MCAuto<DataArrayAsciiChar> names;
if((const DataArrayInt *)_fam)
- fam=_fam->substr(start,end);
+ fam=_fam->subArray(start,end);
if((const DataArrayInt *)_num)
- num=_num->substr(start,end);
+ num=_num->subArray(start,end);
if((const DataArrayAsciiChar *)_names)
- names=static_cast<DataArrayAsciiChar *>(_names->substr(start,end));
+ names=static_cast<DataArrayAsciiChar *>(_names->subArray(start,end));
MEDFileUMeshPerType::Write(fid,mName,mdim,(*it),fam,num,names);
start=end;
}
_m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
}
+void MEDFileUMeshSplitL1::serialize(std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI) const
+{
+ bigArraysI.push_back(_fam);
+ bigArraysI.push_back(_num);
+ _m_by_types.serialize(tinyInt,bigArraysI);
+}
+
+void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
+{
+ _fam=bigArraysI.back(); bigArraysI.pop_back();
+ _num=bigArraysI.back(); bigArraysI.pop_back();
+ _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
+}
+
void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
{
DataArrayInt *arr=_fam;
_fam=famArr;
}
+DataArrayInt *MEDFileUMeshSplitL1::getFamilyField()
+{
+ return _fam;
+}
+
void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
{
if(!renumArr)
m->renumberCells(renum->getConstPointer(),true);
else
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
+ MCAuto<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
m->renumberCells(locnum->getConstPointer(),true);
}
return m;
}
+MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
+{
+ MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
+ ret->unserialize(name,coo,tinyInt,bigArraysI);
+ return ret.retn();
+}
+
MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
{
return Renumber2(_num,m,cellIds);
}
if(_mp_time>=_m_time)
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
MEDCoupling1GTUMesh *tmp(*it);
if(tmp)
void MEDFileUMeshAggregateCompute::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
{
std::size_t sz(mParts.size());
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> > ret(sz);
+ std::vector< MCAuto<MEDCoupling1GTUMesh> > ret(sz);
for(std::size_t i=0;i<sz;i++)
{
const MEDCoupling1GTUMesh *elt(mParts[i]);
return _m;
}
+int MEDFileUMeshAggregateCompute::getNumberOfCells() const
+{
+ if(_mp_time<=_m_time)
+ return _m->getNumberOfCells();
+ int ret(0);
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ ret+=(*it)->getNumberOfCells();
+ return ret;
+}
+
std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
{
if(_mp_time>=_m_time)
return _m->getAllGeoTypesSorted();
}
+int MEDFileUMeshAggregateCompute::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ if(_mp_time>=_m_time)
+ {
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(elt && elt->getCellModelEnum()==ct)
+ return elt->getNumberOfCells();
+ }
+ return 0;
+ }
+ else
+ return _m->getNumberOfCellsWithType(ct);
+}
+
std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
{
if(_mp_time<_m_time)
//
std::vector<MEDCoupling1GTUMesh *> ret(_m_parts.size());
std::size_t i(0);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
{
const MEDCoupling1GTUMesh *elt(*it);
ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt);
{
if(_mp_time>_m_time)
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
MEDCoupling1GTUMesh *m(*it);
if(m)
{
const MEDCouplingUMesh *m(_m);
if(!m)
- throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ {
+ if(_m_parts.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
+ else
+ return ;// no needs to compte parts they are already here !
+ }
std::vector<MEDCouplingUMesh *> ms(m->splitByType());
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
+ std::vector< MCAuto<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
std::size_t sz(msMSafe.size());
_m_parts.resize(sz);
for(std::size_t i=0;i<sz;i++)
throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
}
+void MEDFileUMeshAggregateCompute::serialize(std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI) const
+{
+ if(_mp_time<_m_time)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
+ std::size_t sz(_m_parts.size());
+ tinyInt.push_back((int)sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
+ tinyInt.push_back(mesh->getCellModelEnum());
+ const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
+ const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
+ if(mesh1)
+ {
+ DataArrayInt *elt(mesh1->getNodalConnectivity());
+ if(elt)
+ elt->incrRef();
+ MCAuto<DataArrayInt> elt1(elt);
+ bigArraysI.push_back(elt1);
+ }
+ else if(mesh2)
+ {
+ DataArrayInt *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
+ if(elt1)
+ elt1->incrRef();
+ if(elt2)
+ elt2->incrRef();
+ MCAuto<DataArrayInt> elt11(elt1),elt22(elt2);
+ bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
+ const PartDefinition *pd(_part_def[i]);
+ if(!pd)
+ tinyInt.push_back(-1);
+ else
+ {
+ std::vector<int> tinyTmp;
+ pd->serialize(tinyTmp,bigArraysI);
+ tinyInt.push_back((int)tinyTmp.size());
+ tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
+ }
+ }
+}
+
+void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
+{
+ int nbParts(tinyInt.back()); tinyInt.pop_back();
+ _part_def.clear(); _part_def.resize(nbParts);
+ _m_parts.clear(); _m_parts.resize(nbParts);
+ for(int i=0;i<nbParts;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
+ MCAuto<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
+ mesh->setCoords(coo);
+ MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
+ if(mesh1)
+ {
+ mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
+ }
+ else if(mesh2)
+ {
+ MCAuto<DataArrayInt> elt0,elt1;
+ elt0=bigArraysI.back(); bigArraysI.pop_back();
+ elt1=bigArraysI.back(); bigArraysI.pop_back();
+ mesh2->setNodalConnectivity(elt0,elt1);
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
+ _m_parts[i]=mesh;
+ int pdid(tinyInt.back()); tinyInt.pop_back();
+ if(pdid!=-1)
+ _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
+ _mp_time=std::max(_mp_time,_m_time)+1;
+ }
+}
+
/*!
* This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
*/
std::size_t MEDFileUMeshAggregateCompute::getTimeOfParts() const
{
std::size_t ret(0);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
const MEDCoupling1GTUMesh *elt(*it);
if(!elt)
std::size_t MEDFileUMeshAggregateCompute::getHeapMemorySizeWithoutChildren() const
{
- std::size_t ret(_m_parts.size()*sizeof(MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh>));
+ std::size_t ret(_m_parts.size()*sizeof(MCAuto<MEDCoupling1GTUMesh>));
return ret;
}
std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
ret.push_back((const MEDCoupling1GTUMesh *)*it);
ret.push_back((const MEDCouplingUMesh *)_m);
return ret;
}
-MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCpy(DataArrayDouble *coords) const
+MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCopy(DataArrayDouble *coords) const
{
MEDFileUMeshAggregateCompute ret;
ret._m_parts.resize(_m_parts.size());
const MEDCoupling1GTUMesh *elt(_m_parts[i]);
if(elt)
{
- ret._m_parts[i]=static_cast<ParaMEDMEM::MEDCoupling1GTUMesh*>(elt->deepCpy());
+ ret._m_parts[i]=static_cast<MEDCoupling::MEDCoupling1GTUMesh*>(elt->deepCopy());
ret._m_parts[i]->setCoords(coords);
}
}
ret._mp_time=_mp_time; ret._m_time=_m_time;
if((const MEDCouplingUMesh *)_m)
{
- ret._m=static_cast<ParaMEDMEM::MEDCouplingUMesh*>(_m->deepCpy());
+ ret._m=static_cast<MEDCoupling::MEDCouplingUMesh*>(_m->deepCopy());
ret._m->setCoords(coords);
}
+ std::size_t sz(_part_def.size());
+ ret._part_def.clear(); ret._part_def.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *elt(_part_def[i]);
+ if(elt)
+ ret._part_def[i]=elt->deepCopy();
+ }
return ret;
}
+void MEDFileUMeshAggregateCompute::shallowCpyMeshes()
+{
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ {
+ const MEDCoupling1GTUMesh *elt(*it);
+ if(elt)
+ {
+ MCAuto<MEDCouplingMesh> elt2(elt->clone(false));
+ *it=DynamicCastSafe<MEDCouplingMesh,MEDCoupling1GTUMesh>(elt2);
+ }
+ }
+ const MEDCouplingUMesh *m(_m);
+ if(m)
+ _m=m->clone(false);
+}
+
bool MEDFileUMeshAggregateCompute::isEqual(const MEDFileUMeshAggregateCompute& other, double eps, std::string& what) const
{
const MEDCouplingUMesh *m1(getUmesh());
return false;
}
}
+ std::size_t sz(_part_def.size());
+ if(sz!=other._part_def.size())
+ {
+ what=std::string("number of subdivision per geo type for part definition is not the same !");
+ return false;
+ }
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
+ if(!pd0 && !pd1)
+ continue;
+ if((!pd0 && pd1) || (pd0 && !pd1))
+ {
+ what=std::string("a cell part def is defined only for one among this or other !");
+ return false;
+ }
+ bool ret(pd0->isEqual(pd1,what));
+ if(!ret)
+ return false;
+ }
return true;
}
+void MEDFileUMeshAggregateCompute::checkConsistency() const
+{
+ if(_mp_time >= _m_time)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();
+ it!=_m_parts.end(); it++)
+ (*it)->checkConsistency();
+ else
+ _m->checkConsistency();
+}
+
void MEDFileUMeshAggregateCompute::clearNonDiscrAttributes() const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
MEDFileUMeshSplitL1::ClearNonDiscrAttributes(*it);
MEDFileUMeshSplitL1::ClearNonDiscrAttributes(_m);
}
void MEDFileUMeshAggregateCompute::synchronizeTinyInfo(const MEDFileMesh& master) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
const MEDCoupling1GTUMesh *tmp(*it);
if(tmp)
else
{
std::vector<int> ret;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
const MEDCoupling1GTUMesh *tmp(*it);
if(!tmp)
else
{
int ret=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
const MEDCoupling1GTUMesh *m(*it);
if(!m)
void MEDFileUMeshAggregateCompute::setCoords(DataArrayDouble *coords)
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
{
MEDCoupling1GTUMesh *tmp(*it);
if(tmp)
