-// Copyright (C) 2007-2013 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2019 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
-// version 2.1 of the License.
+// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// Author : Anthony Geay (CEA/DEN)
#include "MEDFileMeshElt.hxx"
+#include "MEDFileSafeCaller.txx"
+#include "MEDFileMeshReadSelector.hxx"
+#include "MEDFileBasis.hxx"
#include "MEDCouplingUMesh.hxx"
+#include "InterpKernelException.hxx"
#include "InterpKernelAutoPtr.hxx"
#include "CellModel.hxx"
#include <iostream>
-extern med_geometry_type typmai3[32];
+extern med_geometry_type typmai3[34];
-using namespace ParaMEDMEM;
+using namespace MEDCoupling;
-MEDFileUMeshPerType *MEDFileUMeshPerType::New(med_idt fid, const char *mName, int dt, int it, int mdim, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType geoElt2)
+MEDFileUMeshPerTypeCommon *MEDFileUMeshPerTypeCommon::New()
+{
+ return new MEDFileUMeshPerTypeCommon;
+}
+
+void MEDFileUMeshPerTypeCommon::loadCommonPart(med_idt fid, const char *mName, int dt, int it, mcIdType curNbOfElem, med_geometry_type geoElt,
+ med_entity_type entity, MEDFileMeshReadSelector *mrs)
+{
+ med_bool changement,transformation;
+ _fam=0;
+ if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ if(!mrs || mrs->isCellFamilyFieldReading())
+ {
+ MCAuto<DataArrayMedInt> miFam=DataArrayMedInt::New();
+ miFam->alloc(curNbOfElem,1);
+ if(MEDmeshEntityFamilyNumberRd(fid,mName,dt,it,entity,geoElt,miFam->getPointer())!=0)
+ std::fill(miFam->getPointer(),miFam->getPointer()+curNbOfElem,0);
+ _fam=FromMedIntArray<mcIdType>( miFam );
+ }
+ }
+ _num=0;
+ if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
+ {
+ if(!mrs || mrs->isCellNumFieldReading())
+ {
+ MCAuto<DataArrayMedInt> miNum=DataArrayMedInt::New();
+ miNum->alloc(curNbOfElem,1);
+ if(MEDmeshEntityNumberRd(fid,mName,dt,it,entity,geoElt,miNum->getPointer())!=0)
+ miNum=0;
+ _num=FromMedIntArray<mcIdType>(miNum);
+ }
+ }
+ _names=0;
+ if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_NAME,MED_NODAL,&changement,&transformation)>0)
+ {
+ if(!mrs || mrs->isCellNameFieldReading())
+ {
+ _names=DataArrayAsciiChar::New();
+ _names->alloc(curNbOfElem+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
+ if(MEDmeshEntityNameRd(fid,mName,dt,it,entity,geoElt,_names->getPointer())!=0)
+ _names=0;
+ else
+ _names->reAlloc(curNbOfElem);//not a bug to avoid the memory corruption due to last \0 at the end
+ }
+ }
+}
+
+std::size_t MEDFileUMeshPerTypeCommon::getHeapMemorySizeWithoutChildren() const
+{
+ return 0;
+}
+
+std::vector<const BigMemoryObject *> MEDFileUMeshPerTypeCommon::getDirectChildrenWithNull() const
+{
+ std::vector<const BigMemoryObject *> ret;
+ ret.push_back((const DataArrayIdType *)_num);
+ ret.push_back((const DataArrayIdType *)_fam);
+ ret.push_back((const DataArrayAsciiChar *)_names);
+ return ret;
+}
+
+MEDFileUMeshPerType *MEDFileUMeshPerType::New(med_idt fid, const char *mName, int dt, int it, int mdim, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType geoElt2, MEDFileMeshReadSelector *mrs)
{
med_entity_type whichEntity;
if(!isExisting(fid,mName,dt,it,geoElt,whichEntity))
return 0;
- return new MEDFileUMeshPerType(fid,mName,dt,it,mdim,geoElt,geoElt2,whichEntity);
+ return new MEDFileUMeshPerType(fid,mName,dt,it,mdim,geoElt,geoElt2,whichEntity,mrs);
+}
+
+MEDFileUMeshPerType *MEDFileUMeshPerType::NewPart(med_idt fid, const char *mName, int dt, int it, int mdim, INTERP_KERNEL::NormalizedCellType geoElt2, mcIdType strt, mcIdType stp, mcIdType step, MEDFileMeshReadSelector *mrs)
+{
+ int geoElt2i((int)geoElt2);
+ if(geoElt2i<0 || geoElt2i>=34)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::NewPart : Not recognized MEDCoupling/MEDLoader geometric type !");
+ med_geometry_type geoElt(typmai3[geoElt2]);
+ med_entity_type whichEntity;
+ if(!isExisting(fid,mName,dt,it,geoElt,whichEntity))
+ throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::NewPart : The specified geo type is not present in the specified mesh !");
+ MCAuto<MEDFileUMeshPerType> ret(new MEDFileUMeshPerType);
+ ret->loadPart(fid,mName,dt,it,mdim,geoElt,geoElt2,whichEntity,strt,stp,step,mrs);
+ return ret.retn();
+}
+
+std::size_t MEDFileUMeshPerType::getHeapMemorySizeWithoutChildren() const
+{
+ return MEDFileUMeshPerTypeCommon::getHeapMemorySizeWithoutChildren()+0;
+}
+
+std::vector<const BigMemoryObject *> MEDFileUMeshPerType::getDirectChildrenWithNull() const
+{
+ std::vector<const BigMemoryObject *> ret(MEDFileUMeshPerTypeCommon::getDirectChildrenWithNull());
+ ret.push_back((const MEDCoupling1GTUMesh *)_m);
+ return ret;
}
bool MEDFileUMeshPerType::isExisting(med_idt fid, const char *mName, int dt, int it, med_geometry_type geoElt, med_entity_type& whichEntity)
{
static const med_entity_type entities[3]={MED_CELL,MED_DESCENDING_FACE,MED_DESCENDING_EDGE};
- int nbOfElt=0;
+ mcIdType nbOfElt=0;
for(int i=0;i<3;i++)
{
med_bool changement,transformation;
- int tmp=MEDmeshnEntity(fid,mName,dt,it,entities[i],geoElt,MED_CONNECTIVITY,MED_NODAL,
- &changement,&transformation);
+ mcIdType tmp(MEDmeshnEntity(fid,mName,dt,it,entities[i],geoElt,MED_CONNECTIVITY,MED_NODAL,&changement,&transformation));
if(tmp>nbOfElt)
{
nbOfElt=tmp;
whichEntity=entities[i];
if(i>0)
- std::cerr << "WARNING : MEDFile has been detected to be no compilant with MED 3 : Please change entity in MEDFile for geotype " << geoElt << std::endl;
+ std::cerr << "WARNING : MEDFile has been detected to be noncompliant with MED 3 : Please change entity in MEDFile for geotype " << geoElt << std::endl;
}
}
return nbOfElt>0;
int MEDFileUMeshPerType::getDim() const
{
- const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(_type);
- return cm.getDimension();
+ return _m->getMeshDimension();
+}
+
+MEDFileUMeshPerType::MEDFileUMeshPerType()
+{
}
MEDFileUMeshPerType::MEDFileUMeshPerType(med_idt fid, const char *mName, int dt, int it, int mdim, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type,
- med_entity_type entity):_type(type),_entity(entity)
+ med_entity_type entity, MEDFileMeshReadSelector *mrs)
{
med_bool changement,transformation;
- int curNbOfElem=MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_CONNECTIVITY,MED_NODAL,
- &changement,&transformation);
- if(type!=INTERP_KERNEL::NORM_POLYGON && type!=INTERP_KERNEL::NORM_POLYHED)
+ mcIdType curNbOfElem(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_CONNECTIVITY,MED_NODAL,&changement,&transformation));
+ const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type));
+ if(!cm.isDynamic())
{
- loadFromStaticType(fid,mName,dt,it,mdim,curNbOfElem,geoElt,type,entity);
+ loadFromStaticType(fid,mName,dt,it,mdim,curNbOfElem,geoElt,type,entity,mrs);
return;
}
- if(type==INTERP_KERNEL::NORM_POLYGON)
+ if(type==INTERP_KERNEL::NORM_POLYGON || type==INTERP_KERNEL::NORM_QPOLYG)
{
- loadPolyg(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity);
+ loadPolyg(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity,mrs);
return;
}
//if(type==INTERP_KERNEL::NORM_POLYHED)
- loadPolyh(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity);
+ loadPolyh(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity,mrs);
}
-void MEDFileUMeshPerType::loadFromStaticType(med_idt fid, const char *mName, int dt, int it, int mdim, int curNbOfElem, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type,
- med_entity_type entity)
+void MEDFileUMeshPerType::loadPart(med_idt fid, const char *mName, int dt, int it, int mdim, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type,
+ med_entity_type entity, mcIdType strt, mcIdType end, mcIdType step, MEDFileMeshReadSelector *mrs)
{
- _conn=DataArrayInt::New();
- int nbOfNodesPerCell=(geoElt%100);
- _conn->alloc((nbOfNodesPerCell+1)*curNbOfElem,1);
- _conn_index=DataArrayInt::New();
- _conn_index->alloc(curNbOfElem+1,1);
- INTERP_KERNEL::AutoPtr<int> connTab=new int[(nbOfNodesPerCell)*curNbOfElem];
- MEDmeshElementConnectivityRd(fid,mName,dt,it,entity,geoElt,MED_NODAL,MED_FULL_INTERLACE,connTab);
- loadCommonPart(fid,mName,dt,it,mdim,curNbOfElem,geoElt,entity);
- int *w1=_conn->getPointer();
- int *w2=_conn_index->getPointer();
- *w2++=0;
- const int *wi=connTab;
- for(int i=0;i<curNbOfElem;i++,wi+=nbOfNodesPerCell,w2++)
+ med_bool changement,transformation;
+ mcIdType curNbOfElem(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_CONNECTIVITY,MED_NODAL,&changement,&transformation));
+ const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type));
+ _pd=PartDefinition::New(strt,end,step);
+ if(!cm.isDynamic())
{
- *w1++=(int)type;
- w1=std::transform(wi,wi+nbOfNodesPerCell,w1,std::bind2nd(std::plus<int>(),-1));
- *w2=w2[-1]+nbOfNodesPerCell+1;
+ loadPartStaticType(fid,mName,dt,it,mdim,curNbOfElem,geoElt,type,entity,strt,end,step,mrs);
}
+ else
+ throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::loadPart : not implemented yet for the dynamic type !");
}
-void MEDFileUMeshPerType::loadCommonPart(med_idt fid, const char *mName, int dt, int it, int mdim, int curNbOfElem, med_geometry_type geoElt,
- med_entity_type entity)
+void MEDFileUMeshPerType::loadFromStaticType(med_idt fid, const char *mName, int dt, int it, int mdim, mcIdType curNbOfElem, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type,
+ med_entity_type entity, MEDFileMeshReadSelector *mrs)
+{
+ _m=MEDCoupling1SGTUMesh::New(mName,type);
+ MEDCoupling1SGTUMesh *mc(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *)_m));
+ MCAuto<DataArrayMedInt> conn(DataArrayMedInt::New());
+ mcIdType nbOfNodesPerCell(mc->getNumberOfNodesPerCell());
+ conn->alloc(nbOfNodesPerCell*curNbOfElem,1);
+ MEDFILESAFECALLERRD0(MEDmeshElementConnectivityRd,(fid,mName,dt,it,entity,geoElt,MED_NODAL,MED_FULL_INTERLACE,conn->getPointer()));
+ std::transform(conn->begin(),conn->end(),conn->getPointer(),std::bind2nd(std::plus<med_int>(),-1));
+ mc->setNodalConnectivity(FromMedIntArray<mcIdType>(conn));
+ loadCommonPart(fid,mName,dt,it,curNbOfElem,geoElt,entity,mrs);
+}
+
+void MEDFileUMeshPerType::loadPartStaticType(med_idt fid, const char *mName, int dt, int it, int mdim, mcIdType curNbOfElem, med_geometry_type geoElt, INTERP_KERNEL::NormalizedCellType type,
+ med_entity_type entity, mcIdType strt, mcIdType end, mcIdType step, MEDFileMeshReadSelector *mrs)
+{
+ if(strt<0)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::loadPartStaticType : start pos is negative !");
+ if(end>curNbOfElem)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::loadPartStaticType : end is after the authorized range !");
+ mcIdType nbOfEltsToLoad(DataArray::GetNumberOfItemGivenBES(strt,end,step,"MEDFileUMeshPerType::loadPartStaticType"));
+ _m=MEDCoupling1SGTUMesh::New(mName,type);
+ MEDCoupling1SGTUMesh *mc(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *)_m));
+ MCAuto<DataArrayMedInt> conn(DataArrayMedInt::New());
+ mcIdType nbOfNodesPerCell(mc->getNumberOfNodesPerCell());
+ conn->alloc(nbOfNodesPerCell*nbOfEltsToLoad,1);
+ med_filter filter=MED_FILTER_INIT;
+ MEDfilterBlockOfEntityCr(fid,/*nentity*/ToMedInt(curNbOfElem),/*nvaluesperentity*/1,/*nconstituentpervalue*/ToMedInt(nbOfNodesPerCell),
+ MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
+ /*start*/ToMedInt(strt+1),/*stride*/ToMedInt(step),/*count*/1,/*blocksize*/ToMedInt(nbOfEltsToLoad),
+ /*lastblocksize=useless because count=1*/0,&filter);
+ MEDFILESAFECALLERRD0(MEDmeshElementConnectivityAdvancedRd,(fid,mName,dt,it,entity,geoElt,MED_NODAL,&filter,conn->getPointer()));
+ MEDfilterClose(&filter);
+ std::transform(conn->begin(),conn->end(),conn->getPointer(),std::bind2nd(std::plus<med_int>(),-1));
+ mc->setNodalConnectivity(FromMedIntArray<mcIdType>(conn));
+ loadPartOfCellCommonPart(fid,mName,strt,end,step,dt,it,mdim,curNbOfElem,geoElt,entity,mrs);
+}
+
+void MEDFileUMeshPerType::loadPartOfCellCommonPart(med_idt fid, const char *mName, mcIdType strt, mcIdType stp, mcIdType step, int dt, int it, int mdim, mcIdType curNbOfElem, med_geometry_type geoElt, med_entity_type entity, MEDFileMeshReadSelector *mrs)
{
med_bool changement,transformation;
- _fam=DataArrayInt::New();
- _fam->alloc(curNbOfElem,1);
+ _fam=0;
+ mcIdType nbOfEltsToLoad(DataArray::GetNumberOfItemGivenBES(strt,stp,step,"MEDFileUMeshPerType::loadPartOfCellCommonPart"));
if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
- if(MEDmeshEntityFamilyNumberRd(fid,mName,dt,it,entity,geoElt,_fam->getPointer())!=0)
- std::fill(_fam->getPointer(),_fam->getPointer()+curNbOfElem,0);
+ if(!mrs || mrs->isCellFamilyFieldReading())
+ {
+ MCAuto<DataArrayMedInt> miFam(DataArrayMedInt::New());
+ miFam->alloc(nbOfEltsToLoad,1);
+ med_filter filter=MED_FILTER_INIT;
+ MEDfilterBlockOfEntityCr(fid,/*nentity*/ToMedInt(curNbOfElem),/*nvaluesperentity*/1,/*nconstituentpervalue*/1,
+ MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
+ /*start*/ToMedInt(strt+1),/*stride*/ToMedInt(step),/*count*/1,/*blocksize*/ToMedInt(nbOfEltsToLoad),
+ /*lastblocksize=useless because count=1*/0,&filter);
+ if(MEDmeshEntityAttributeAdvancedRd(fid,mName,MED_FAMILY_NUMBER,dt,it,entity,geoElt,&filter,miFam->getPointer())!=0)
+ miFam->fillWithZero();
+ _fam=FromMedIntArray<mcIdType>(miFam);
+ MEDfilterClose(&filter);
+ }
}
- else
- std::fill(_fam->getPointer(),_fam->getPointer()+curNbOfElem,0);
+ _num=0;
if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
{
- _num=DataArrayInt::New();
- _num->alloc(curNbOfElem,1);
- if(MEDmeshEntityNumberRd(fid,mName,dt,it,entity,geoElt,_num->getPointer())!=0)
- _num=0;
+ if(!mrs || mrs->isCellNumFieldReading())
+ {
+ MCAuto<DataArrayMedInt> miNum(DataArrayMedInt::New());
+ miNum->alloc(nbOfEltsToLoad,1);
+ med_filter filter=MED_FILTER_INIT;
+ MEDfilterBlockOfEntityCr(fid,/*nentity*/ToMedInt(curNbOfElem),/*nvaluesperentity*/1,/*nconstituentpervalue*/1,
+ MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
+ /*start*/ToMedInt(strt+1),/*stride*/ToMedInt(step),/*count*/1,/*blocksize*/ToMedInt(nbOfEltsToLoad),
+ /*lastblocksize=useless because count=1*/0,&filter);
+ if(MEDmeshEntityAttributeAdvancedRd(fid,mName,MED_NUMBER,dt,it,entity,geoElt,&filter,miNum->getPointer())!=0)
+ miNum->fillWithZero();
+ _num=FromMedIntArray<mcIdType>(miNum);
+ MEDfilterClose(&filter);
+ }
}
- else
- _num=0;
+ _names=0;
if(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_NAME,MED_NODAL,&changement,&transformation)>0)
{
- _names=DataArrayAsciiChar::New();
- _names->alloc(curNbOfElem+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- if(MEDmeshEntityNameRd(fid,mName,dt,it,entity,geoElt,_names->getPointer())!=0)
- _names=0;
- else
- _names->reAlloc(curNbOfElem);//not a bug to avoid the memory corruption due to last \0 at the end
+ if(!mrs || mrs->isCellNameFieldReading())
+ {
+ _names=DataArrayAsciiChar::New();
+ _names->alloc(nbOfEltsToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
+ med_filter filter=MED_FILTER_INIT;
+ MEDfilterBlockOfEntityCr(fid,/*nentity*/ToMedInt(curNbOfElem),/*nvaluesperentity*/1,/*nconstituentpervalue*/1,
+ MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
+ /*start*/ToMedInt(strt+1),/*stride*/ToMedInt(step),/*count*/1,/*blocksize*/ToMedInt(nbOfEltsToLoad),
+ /*lastblocksize=useless because count=1*/0,&filter);
+ if(MEDmeshEntityAttributeAdvancedRd(fid,mName,MED_NAME,dt,it,entity,geoElt,&filter,_names->getPointer())!=0)
+ _names=0;
+ else
+ _names->reAlloc(nbOfEltsToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
+ MEDfilterClose(&filter);
+ }
}
}
-void MEDFileUMeshPerType::loadPolyg(med_idt fid, const char *mName, int dt, int it, int mdim, int arraySize, med_geometry_type geoElt,
- med_entity_type entity)
+void MEDFileUMeshPerType::loadPolyg(med_idt fid, const char *mName, int dt, int it, int mdim, mcIdType arraySize, med_geometry_type geoElt,
+ med_entity_type entity, MEDFileMeshReadSelector *mrs)
{
med_bool changement,transformation;
- med_int curNbOfElem=MEDmeshnEntity(fid,mName,dt,it,entity,MED_POLYGON,MED_INDEX_NODE,MED_NODAL,&changement,&transformation)-1;
- _conn_index=DataArrayInt::New();
- _conn_index->alloc(curNbOfElem+1,1);
- _conn=DataArrayInt::New();
- _conn->alloc(arraySize+curNbOfElem,1);
- INTERP_KERNEL::AutoPtr<int> locConn=new int[arraySize];
- MEDmeshPolygonRd(fid,mName,dt,it,MED_CELL,MED_NODAL,_conn_index->getPointer(),locConn);
- int *w1=_conn->getPointer();
- int *w2=_conn_index->getPointer();
- const int *wi=locConn;
- for(int i=0;i<curNbOfElem;i++,w2++)
- {
- *w1++=(int)INTERP_KERNEL::NORM_POLYGON;
- const int *wi2=wi+(w2[1]-w2[0]);
- w1=std::transform(wi,wi2,w1,std::bind2nd(std::plus<int>(),-1));
- wi=wi2;
- *w2=*w2-1+i;
- }
- *w2=*w2-1+curNbOfElem;
- loadCommonPart(fid,mName,dt,it,mdim,curNbOfElem,MED_POLYGON,entity);
+ mcIdType curNbOfElem(MEDmeshnEntity(fid,mName,dt,it,entity,geoElt,MED_INDEX_NODE,MED_NODAL,&changement,&transformation)-1);
+ _m=MEDCoupling1DGTUMesh::New(mName,geoElt==MED_POLYGON?INTERP_KERNEL::NORM_POLYGON:INTERP_KERNEL::NORM_QPOLYG);
+ MCAuto<MEDCoupling1DGTUMesh> mc(DynamicCast<MEDCoupling1GTUMesh,MEDCoupling1DGTUMesh>(_m));
+ MCAuto<DataArrayMedInt> conn(DataArrayMedInt::New()),connI(DataArrayMedInt::New());
+ conn->alloc(arraySize,1); connI->alloc(curNbOfElem+1,1);
+ MEDFILESAFECALLERRD0(MEDmeshPolygon2Rd,(fid,mName,dt,it,MED_CELL,geoElt,MED_NODAL,connI->getPointer(),conn->getPointer()));
+ std::transform(conn->begin(),conn->end(),conn->getPointer(),std::bind2nd(std::plus<med_int>(),-1));
+ std::transform(connI->begin(),connI->end(),connI->getPointer(),std::bind2nd(std::plus<med_int>(),-1));
+ mc->setNodalConnectivity(FromMedIntArray<mcIdType>(conn),FromMedIntArray<mcIdType>(connI));
+ loadCommonPart(fid,mName,dt,it,curNbOfElem,geoElt,entity,mrs);
}
-void MEDFileUMeshPerType::loadPolyh(med_idt fid, const char *mName, int dt, int it, int mdim, int connFaceLgth, med_geometry_type geoElt,
- med_entity_type entity)
+void MEDFileUMeshPerType::loadPolyh(med_idt fid, const char *mName, int dt, int it, int mdim, mcIdType connFaceLgth, med_geometry_type geoElt,
+ med_entity_type entity, MEDFileMeshReadSelector *mrs)
{
med_bool changement,transformation;
- med_int indexFaceLgth=MEDmeshnEntity(fid,mName,dt,it,MED_CELL,MED_POLYHEDRON,MED_INDEX_NODE,MED_NODAL,&changement,&transformation);
- int curNbOfElem=MEDmeshnEntity(fid,mName,dt,it,MED_CELL,MED_POLYHEDRON,MED_INDEX_FACE,MED_NODAL,&changement,&transformation)-1;
- INTERP_KERNEL::AutoPtr<int> index=new int[curNbOfElem+1];
- INTERP_KERNEL::AutoPtr<int> indexFace=new int[indexFaceLgth];
- INTERP_KERNEL::AutoPtr<int> locConn=new int[connFaceLgth];
- MEDmeshPolyhedronRd(fid,mName,dt,it,MED_CELL,MED_NODAL,index,indexFace,locConn);
- int arraySize=connFaceLgth;
- for(int i=0;i<curNbOfElem;i++)
+ med_int indexFaceLgth(MEDmeshnEntity(fid,mName,dt,it,MED_CELL,MED_POLYHEDRON,MED_INDEX_NODE,MED_NODAL,&changement,&transformation));
+ mcIdType curNbOfElem(MEDmeshnEntity(fid,mName,dt,it,MED_CELL,MED_POLYHEDRON,MED_INDEX_FACE,MED_NODAL,&changement,&transformation)-1);
+ _m=MEDCoupling1DGTUMesh::New(mName,INTERP_KERNEL::NORM_POLYHED);
+ MCAuto<MEDCoupling1DGTUMesh> mc(DynamicCastSafe<MEDCoupling1GTUMesh,MEDCoupling1DGTUMesh>(_m));
+ INTERP_KERNEL::AutoPtr<med_int> index=new med_int[curNbOfElem+1];
+ INTERP_KERNEL::AutoPtr<med_int> indexFace=new med_int[indexFaceLgth];
+ INTERP_KERNEL::AutoPtr<med_int> locConn=new med_int[connFaceLgth];
+ MEDFILESAFECALLERRD0(MEDmeshPolyhedronRd,(fid,mName,dt,it,MED_CELL,MED_NODAL,index,indexFace,locConn));
+ MCAuto<DataArrayIdType> conn(DataArrayIdType::New()),connI(DataArrayIdType::New());
+ mcIdType arraySize=connFaceLgth;
+ for(mcIdType i=0;i<curNbOfElem;i++)
arraySize+=index[i+1]-index[i]-1;
- _conn=DataArrayInt::New();
- _conn->alloc(arraySize+curNbOfElem,1);
- int *wFinalConn=_conn->getPointer();
- _conn_index=DataArrayInt::New();
- _conn_index->alloc(curNbOfElem+1,1);
- int *finalIndex=_conn_index->getPointer();
+ conn=DataArrayIdType::New();
+ conn->alloc(arraySize,1);
+ mcIdType *wFinalConn=conn->getPointer();
+ connI->alloc(curNbOfElem+1,1);
+ mcIdType *finalIndex(connI->getPointer());
finalIndex[0]=0;
- for(int i=0;i<curNbOfElem;i++)
+ for(mcIdType i=0;i<curNbOfElem;i++)
{
- *wFinalConn++=(int)INTERP_KERNEL::NORM_POLYHED;
- finalIndex[i+1]=finalIndex[i]+index[i+1]-index[i]-1+indexFace[index[i+1]-1]-indexFace[index[i]-1]+1;
- wFinalConn=std::transform(locConn+indexFace[index[i]-1]-1,locConn+indexFace[index[i]]-1,wFinalConn,std::bind2nd(std::plus<int>(),-1));
- for(int j=index[i];j<index[i+1]-1;j++)
+ finalIndex[i+1]=finalIndex[i]+index[i+1]-index[i]-1+indexFace[index[i+1]-1]-indexFace[index[i]-1];
+ wFinalConn=std::transform(locConn+indexFace[index[i]-1]-1,locConn+indexFace[index[i]]-1,wFinalConn,std::bind2nd(std::plus<mcIdType>(),-1));
+ for(mcIdType j=index[i];j<index[i+1]-1;j++)
{
*wFinalConn++=-1;
- wFinalConn=std::transform(locConn+indexFace[j]-1,locConn+indexFace[j+1]-1,wFinalConn,std::bind2nd(std::plus<int>(),-1));
+ wFinalConn=std::transform(locConn+indexFace[j]-1,locConn+indexFace[j+1]-1,wFinalConn,std::bind2nd(std::plus<mcIdType>(),-1));
}
}
- loadCommonPart(fid,mName,dt,it,mdim,curNbOfElem,MED_POLYHEDRON,entity);
+ mc->setNodalConnectivity(conn,connI);
+ loadCommonPart(fid,mName,dt,it,curNbOfElem,MED_POLYHEDRON,entity,mrs);
}
-void MEDFileUMeshPerType::write(med_idt fid, const char *mname, int mdim, const MEDCouplingUMesh *m, const DataArrayInt *fam, const DataArrayInt *num, const DataArrayAsciiChar *names)
+void MEDFileUMeshPerType::Write(med_idt fid, const std::string& mname, int mdim, const MEDCoupling1GTUMesh *m, const DataArrayIdType *fam, const DataArrayIdType *num, const DataArrayAsciiChar *names)
{
- int nbOfCells=m->getNumberOfCells();
+ mcIdType nbOfCells=m->getNumberOfCells();
if(nbOfCells<1)
return ;
int dt,it;
INTERP_KERNEL::NormalizedCellType ikt=m->getTypeOfCell(0);
const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(ikt);
med_geometry_type curMedType=typmai3[(int)ikt];
- const int *conn=m->getNodalConnectivity()->getConstPointer();
- const int *connI=m->getNodalConnectivityIndex()->getConstPointer();
- if(ikt!=INTERP_KERNEL::NORM_POLYGON && ikt!=INTERP_KERNEL::NORM_POLYHED)
+ if(!cm.isDynamic())
{
- int nbNodesPerCell=cm.getNumberOfNodes();
- INTERP_KERNEL::AutoPtr<int> tab=new int[nbNodesPerCell*nbOfCells];
- int *w=tab;
- for(int i=0;i<nbOfCells;i++)
- w=std::transform(conn+connI[i]+1,conn+connI[i+1],w,std::bind2nd(std::plus<int>(),1));
- MEDmeshElementConnectivityWr(fid,mname,dt,it,timm,MED_CELL,curMedType,MED_NODAL,MED_FULL_INTERLACE,nbOfCells,tab);
+ const MEDCoupling1SGTUMesh *m0(dynamic_cast<const MEDCoupling1SGTUMesh *>(m));
+ if(!m0)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::Write : internal error #1 !");
+ MCAuto<DataArrayMedInt> arr(DataArrayMedInt::Copy(m0->getNodalConnectivity()));
+ std::transform(arr->begin(),arr->end(),arr->getPointer(),std::bind2nd(std::plus<med_int>(),1));
+ MEDFILESAFECALLERWR0(MEDmeshElementConnectivityWr,(fid,mname.c_str(),dt,it,timm,MED_CELL,curMedType,MED_NODAL,MED_FULL_INTERLACE,ToMedInt(nbOfCells),arr->begin()));
}
else
{
- if(ikt==INTERP_KERNEL::NORM_POLYGON)
+ const MEDCoupling1DGTUMesh *m0(dynamic_cast<const MEDCoupling1DGTUMesh *>(m));
+ if(!m0)
+ throw INTERP_KERNEL::Exception("MEDFileUMeshPerType::Write : internal error #2 !");
+ if(ikt==INTERP_KERNEL::NORM_POLYGON || ikt==INTERP_KERNEL::NORM_QPOLYG)
{
- INTERP_KERNEL::AutoPtr<int> tab1=new int[nbOfCells+1];
- INTERP_KERNEL::AutoPtr<int> tab2=new int[m->getMeshLength()];
- int *wI=tab1; *wI=1;
- int *w=tab2;
- for(int i=0;i<nbOfCells;i++,wI++)
- {
- wI[1]=wI[0]+connI[i+1]-connI[i]-1;
- w=std::transform(conn+connI[i]+1,conn+connI[i+1],w,std::bind2nd(std::plus<int>(),1));
- }
- MEDmeshPolygonWr(fid,mname,dt,it,timm,MED_CELL,MED_NODAL,nbOfCells+1,tab1,tab2);
+ MCAuto<DataArrayMedInt> arr(DataArrayMedInt::Copy(m0->getNodalConnectivity())),arrI(DataArrayMedInt::Copy(m0->getNodalConnectivityIndex()));
+ std::transform(arr->begin(),arr->end(),arr->getPointer(),std::bind2nd(std::plus<med_int>(),1));
+ std::transform(arrI->begin(),arrI->end(),arrI->getPointer(),std::bind2nd(std::plus<med_int>(),1));
+ MEDFILESAFECALLERWR0(MEDmeshPolygon2Wr,(fid,mname.c_str(),dt,it,timm,MED_CELL,ikt==INTERP_KERNEL::NORM_POLYGON?MED_POLYGON:MED_POLYGON2,MED_NODAL,ToMedInt(nbOfCells+1),arrI->begin(),arr->begin()));
}
else
{
- int meshLgth=m->getMeshLength();
- int nbOfFaces=std::count(conn,conn+meshLgth,-1)+nbOfCells;
- INTERP_KERNEL::AutoPtr<int> tab1=new int[nbOfCells+1];
- int *w1=tab1; *w1=1;
- INTERP_KERNEL::AutoPtr<int> tab2=new int[nbOfFaces+1];
- int *w2=tab2; *w2=1;
- INTERP_KERNEL::AutoPtr<int> bigtab=new int[meshLgth-nbOfCells];
- int *bt=bigtab;
- for(int i=0;i<nbOfCells;i++,w1++)
+ const mcIdType *conn(m0->getNodalConnectivity()->begin()),*connI(m0->getNodalConnectivityIndex()->begin());
+ mcIdType meshLgth=m0->getNodalConnectivityLength();
+ mcIdType nbOfFaces=ToIdType(std::count(conn,conn+meshLgth,-1)+nbOfCells);
+ INTERP_KERNEL::AutoPtr<med_int> tab1=new med_int[nbOfCells+1];
+ med_int *w1=tab1; *w1=1;
+ INTERP_KERNEL::AutoPtr<med_int> tab2=new med_int[nbOfFaces+1];
+ med_int *w2=tab2; *w2=1;
+ INTERP_KERNEL::AutoPtr<med_int> bigtab=new med_int[meshLgth];
+ med_int *bt=bigtab;
+ for(mcIdType i=0;i<nbOfCells;i++,w1++)
{
int nbOfFaces2=0;
- for(const int *w=conn+connI[i]+1;w!=conn+connI[i+1];w2++)
+ for(const mcIdType *w=conn+connI[i];w!=conn+connI[i+1];w2++)
{
- const int *wend=std::find(w,conn+connI[i+1],-1);
- bt=std::transform(w,wend,bt,std::bind2nd(std::plus<int>(),1));
- int nbOfNode=std::distance(w,wend);
- w2[1]=w2[0]+nbOfNode;
+ const mcIdType *wend=std::find(w,conn+connI[i+1],-1);
+ bt=std::transform(w,wend,bt,std::bind2nd(std::plus<mcIdType>(),1));
+ std::size_t nbOfNode=std::distance(w,wend);
+ w2[1]=w2[0]+(med_int)nbOfNode;
if(wend!=conn+connI[i+1])
w=wend+1;
else
}
w1[1]=w1[0]+nbOfFaces2;
}
- MEDmeshPolyhedronWr(fid,mname,dt,it,timm,MED_CELL,MED_NODAL,nbOfCells+1,tab1,nbOfFaces+1,tab2,bigtab);
+ MEDFILESAFECALLERWR0(MEDmeshPolyhedronWr,(fid,mname.c_str(),dt,it,timm,MED_CELL,MED_NODAL,ToMedInt(nbOfCells+1),tab1,ToMedInt(nbOfFaces+1),tab2,bigtab));
}
}
if(fam)
- MEDmeshEntityFamilyNumberWr(fid,mname,dt,it,MED_CELL,curMedType,nbOfCells,fam->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_CELL,curMedType,ToMedInt(nbOfCells),ToMedIntArray<mcIdType>(fam)->getConstPointer()));
if(num)
- MEDmeshEntityNumberWr(fid,mname,dt,it,MED_CELL,curMedType,nbOfCells,num->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_CELL,curMedType,ToMedInt(nbOfCells),ToMedIntArray<mcIdType>(num)->getConstPointer()));
if(names)
{
if(names->getNumberOfComponents()!=MED_SNAME_SIZE)
oss << " ! The array has " << names->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,mname,dt,it,MED_CELL,curMedType,nbOfCells,names->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_CELL,curMedType,ToMedInt(nbOfCells),names->getConstPointer()));
}
}
