-// Copyright (C) 2007-2015 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2016 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "MEDFileFieldOverView.hxx"
#include "MEDFileField.hxx"
#include "MEDLoader.hxx"
+#include "MEDFileSafeCaller.txx"
#include "MEDLoaderBase.hxx"
#include "MEDCouplingUMesh.hxx"
+#include "MEDCouplingMappedExtrudedMesh.hxx"
#include "InterpKernelAutoPtr.hxx"
extern med_geometry_type typmai3[34];
-using namespace ParaMEDMEM;
+using namespace MEDCoupling;
const char MEDFileMesh::DFT_FAM_NAME[]="FAMILLE_ZERO";
-MEDFileMesh::MEDFileMesh():_order(-1),_iteration(-1),_time(0.),_univ_wr_status(true)
+const char MEDFileUMesh::SPE_FAM_STR_EXTRUDED_MESH[]="HIDDEN_FAM_EXT_MESH@";
+
+MEDFileMesh::MEDFileMesh():_order(-1),_iteration(-1),_time(0.),_univ_wr_status(true),_axis_type(AX_CART)
{
}
std::vector<const BigMemoryObject *> MEDFileMesh::getDirectChildrenWithNull() const
{
- return std::vector<const BigMemoryObject *>();
+ std::vector<const BigMemoryObject *> ret(1);
+ ret[0]=(const MEDFileEquivalences *)_equiv;
+ return ret;
}
/*!
*/
MEDFileMesh *MEDFileMesh::New(const std::string& fileName, MEDFileMeshReadSelector *mrs)
{
- std::vector<std::string> ms=MEDLoader::GetMeshNames(fileName);
+ std::vector<std::string> ms=MEDCoupling::GetMeshNames(fileName);
if(ms.empty())
{
std::ostringstream oss; oss << "MEDFileMesh::New : no meshes in file \"" << fileName << "\" !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
MEDFileUtilities::CheckFileForRead(fileName);
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
MEDFileUtilities::AutoFid fid=MEDfileOpen(fileName.c_str(),MED_ACC_RDONLY);
int dt,it;
std::string dummy2;
- MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dt,it,dummy2);
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dummy3,dt,it,dummy2);
+ MCAuto<MEDFileMesh> ret;
switch(meshType)
{
case UNSTRUCTURED:
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMesh> ret=MEDFileUMesh::New();
- ret->loadUMeshFromFile(fid,ms.front(),dt,it,mrs);
- return (MEDFileUMesh *)ret.retn();
+ ret=MEDFileUMesh::New();
+ break;
}
case CARTESIAN:
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileCMesh> ret=MEDFileCMesh::New();
- ret->loadCMeshFromFile(fid,ms.front(),dt,it,mrs);
- return (MEDFileCMesh *)ret.retn();
+ ret=MEDFileCMesh::New();
+ break;
}
case CURVE_LINEAR:
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileCurveLinearMesh> ret=MEDFileCurveLinearMesh::New();
- ret->loadCLMeshFromFile(fid,ms.front(),dt,it,mrs);
- return (MEDFileCurveLinearMesh *)ret.retn();
+ ret=MEDFileCurveLinearMesh::New();
+ break;
}
default:
{
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
}
+ ret->loadLLWithAdditionalItems(fid,ms.front(),dt,it,mrs);
+ return ret.retn();
}
/*!
* \param [in] mName - the name of the mesh to read.
* \param [in] dt - the number of a time step.
* \param [in] it - the number of an iteration.
+ * \param [in] joints - the sub-domain joints to use instead of those that can be read
+ * from the MED file. Usually this joints are those just read by another iteration
+ * of mName mesh, when this method is called by MEDFileMeshMultiTS::New()
* \return MEDFileMesh * - a new instance of MEDFileMesh. The caller is to delete this
* mesh using decrRef() as it is no more needed.
* \throw If the file is not readable.
* \throw If there is no mesh with given attributes in the file.
* \throw If the mesh in the file is of a not supported type.
*/
-MEDFileMesh *MEDFileMesh::New(const std::string& fileName, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+MEDFileMesh *MEDFileMesh::New(const std::string& fileName, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs, MEDFileJoints* joints)
{
MEDFileUtilities::CheckFileForRead(fileName);
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
MEDFileUtilities::AutoFid fid=MEDfileOpen(fileName.c_str(),MED_ACC_RDONLY);
int dummy0,dummy1;
std::string dummy2;
- MEDFileMeshL2::GetMeshIdFromName(fid,mName,meshType,dummy0,dummy1,dummy2);
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ MEDFileMeshL2::GetMeshIdFromName(fid,mName,meshType,dummy3,dummy0,dummy1,dummy2);
+ MCAuto<MEDFileMesh> ret;
switch(meshType)
{
case UNSTRUCTURED:
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMesh> ret=MEDFileUMesh::New();
- ret->loadUMeshFromFile(fid,mName,dt,it,mrs);
- return (MEDFileUMesh *)ret.retn();
+ ret=MEDFileUMesh::New();
+ break;
}
case CARTESIAN:
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileCMesh> ret=MEDFileCMesh::New();
- ret->loadCMeshFromFile(fid,mName,dt,it,mrs);
- return (MEDFileCMesh *)ret.retn();
+ ret=MEDFileCMesh::New();
+ break;
}
case CURVE_LINEAR:
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileCurveLinearMesh> ret=MEDFileCurveLinearMesh::New();
- ret->loadCLMeshFromFile(fid,mName,dt,it,mrs);
- return (MEDFileCurveLinearMesh *)ret.retn();
+ ret=MEDFileCurveLinearMesh::New();
+ break;
}
default:
{
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
}
+ ret->loadLLWithAdditionalItems(fid,mName,dt,it,mrs);
+ return ret.retn();
}
/*!
if(_name.empty())
throw INTERP_KERNEL::Exception("MEDFileMesh : name is empty. MED file ask for a NON EMPTY name !");
writeLL(fid);
+ writeJoints(fid);
+ const MEDFileEquivalences *eqs(_equiv);
+ if(eqs)
+ eqs->write(fid);
}
/*!
return false;
if(!areFamsEqual(other,what))
return false;
+ if(!areEquivalencesEqual(other,what))
+ return false;
return true;
}
return ret;
}
+/*!
+ * Returns names of all families of \a this mesh but like they would be in file.
+ * This method is here only for MED file families gurus. If you are a kind user forget this method :-)
+ * This method is only useful for aggressive users that want to have in their file a same family lying both on cells and on nodes. This is not a good idea for lisibility !
+ * For your information internaly in memory such families are renamed to have a nicer API.
+ */
+std::vector<std::string> MEDFileMesh::getFamiliesNamesWithFilePointOfView() const
+{
+ std::vector<std::string> ret(getFamiliesNames());
+ MEDFileMeshL2::RenameFamiliesFromMemToFile(ret);
+ return ret;
+}
+
+/*!
+ * Returns names of groups that partly or fully appear on the level \a meshDimRelToMaxExt.
+ * \param [in] meshDimRelToMaxExt - a relative dimension of interest.
+ * \return std::vector<std::string> - a sequence of group names at \a meshDimRelToMaxExt
+ * level.
+ */
+std::vector<std::string> MEDFileMesh::getGroupsOnSpecifiedLev(int meshDimRelToMaxExt) const
+{
+ std::vector<std::string> ret;
+ std::vector<std::string> allGrps(getGroupsNames());
+ for(std::vector<std::string>::const_iterator it=allGrps.begin();it!=allGrps.end();it++)
+ {
+ std::vector<int> levs(getGrpNonEmptyLevelsExt((*it)));
+ if(std::find(levs.begin(),levs.end(),meshDimRelToMaxExt)!=levs.end())
+ ret.push_back(*it);
+ }
+ return ret;
+}
+
+/*!
+ * Returns all relative mesh levels (including nodes) where a given group is defined.
+ * \param [in] grp - the name of the group of interest.
+ * \return std::vector<int> - a sequence of the relative dimensions.
+ */
+std::vector<int> MEDFileMesh::getGrpNonEmptyLevelsExt(const std::string& grp) const
+{
+ std::vector<std::string> fams(getFamiliesOnGroup(grp));
+ return getFamsNonEmptyLevelsExt(fams);
+}
+
+/*!
+ * Returns all relative mesh levels (**excluding nodes**) where given groups are defined.
+ * To include nodes, call getGrpsNonEmptyLevelsExt() method.
+ * \param [in] grps - a sequence of names of the groups of interest.
+ * \return std::vector<int> - a sequence of the relative dimensions.
+ */
+std::vector<int> MEDFileMesh::getGrpsNonEmptyLevels(const std::vector<std::string>& grps) const
+{
+ std::vector<std::string> fams(getFamiliesOnGroups(grps));
+ return getFamsNonEmptyLevels(fams);
+}
+
+/*!
+ * Returns all relative mesh levels (including nodes) where given groups are defined.
+ * \param [in] grps - a sequence of names of the groups of interest.
+ * \return std::vector<int> - a sequence of the relative dimensions.
+ */
+std::vector<int> MEDFileMesh::getGrpsNonEmptyLevelsExt(const std::vector<std::string>& grps) const
+{
+ std::vector<std::string> fams(getFamiliesOnGroups(grps));
+ return getFamsNonEmptyLevelsExt(fams);
+}
+
+/*!
+ * Returns all relative mesh levels (**excluding nodes**) where a given group is defined.
+ * To include nodes, call getGrpNonEmptyLevelsExt() method.
+ * \param [in] grp - the name of the group of interest.
+ * \return std::vector<int> - a sequence of the relative dimensions.
+ */
+std::vector<int> MEDFileMesh::getGrpNonEmptyLevels(const std::string& grp) const
+{
+ std::vector<std::string> fams(getFamiliesOnGroup(grp));
+ return getFamsNonEmptyLevels(fams);
+}
+
+/*!
+ * Returns all relative mesh levels (**excluding nodes**) where a given family is defined.
+ * To include nodes, call getFamNonEmptyLevelsExt() method.
+ * \param [in] fam - the name of the family of interest.
+ * \return std::vector<int> - a sequence of the relative dimensions.
+ */
+std::vector<int> MEDFileMesh::getFamNonEmptyLevels(const std::string& fam) const
+{
+ std::vector<std::string> fams(1,std::string(fam));
+ return getFamsNonEmptyLevels(fams);
+}
+
+/*!
+ * Returns all relative mesh levels (including nodes) where a given family is defined.
+ * \param [in] fam - the name of the family of interest.
+ * \return std::vector<int> - a sequence of the relative dimensions.
+ */
+std::vector<int> MEDFileMesh::getFamNonEmptyLevelsExt(const std::string& fam) const
+{
+ std::vector<std::string> fams(1,std::string(fam));
+ return getFamsNonEmptyLevelsExt(fams);
+}
+
+std::string MEDFileMesh::GetMagicFamilyStr()
+{
+ return std::string(MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS);
+}
+
/*!
* Changes a name of every family, included in one group only, to be same as the group name.
* \throw If there are families with equal names in \a this mesh.
*/
std::vector<std::string> MEDFileMesh::removeOrphanFamilies()
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> allFamIdsInUse=computeAllFamilyIdsInUse();
+ MCAuto<DataArrayInt> allFamIdsInUse=computeAllFamilyIdsInUse();
std::vector<std::string> ret;
if(!((DataArrayInt*)allFamIdsInUse))
{
return ret;
}
+/*!
+ * This method operates only on maps in \a this. The arrays are not considered here. So this method will remove a family (except "FAMILLE_ZERO" family) if no group lies on it whatever
+ * this family is orphan or not.
+ *
+ * \warning this method is different from removeOrphanFamilies that scans family field array to find orphan families.
+ */
+void MEDFileMesh::removeFamiliesReferedByNoGroups()
+{
+ std::map<std::string,int> fams;
+ std::set<std::string> sfams;
+ for(std::map<std::string,int>::const_iterator it=_families.begin();it!=_families.end();it++)
+ sfams.insert((*it).first);
+ for(std::map<std::string, std::vector<std::string> >::const_iterator it0=_groups.begin();it0!=_groups.end();it0++)
+ for(std::vector<std::string>::const_iterator it1=(*it0).second.begin();it1!=(*it0).second.end();it1++)
+ sfams.erase(*it1);
+ for(std::set<std::string>::const_iterator it=sfams.begin();it!=sfams.end();it++)
+ if(*it!=DFT_FAM_NAME)
+ _families.erase(*it);
+}
+
+/*!
+ * This method has no impact on groups. This method only works on families. This method firstly removes families not refered by any groups in \a this, then all unused entities
+ * are put as belonging to family 0 ("FAMILLE_ZERO"). Finally, all orphanFamilies are killed.
+ * This method raises an exception if "FAMILLE_ZERO" is already belonging to a group.
+ *
+ * \sa MEDFileMesh::removeOrphanFamilies
+ */
+void MEDFileMesh::rearrangeFamilies()
+{
+ checkOrphanFamilyZero();
+ removeFamiliesReferedByNoGroups();
+ //
+ std::vector<int> levels(getNonEmptyLevelsExt());
+ std::set<int> idsRefed;
+ for(std::map<std::string,int>::const_iterator it=_families.begin();it!=_families.end();it++)
+ idsRefed.insert((*it).second);
+ for(std::vector<int>::const_iterator it=levels.begin();it!=levels.end();it++)
+ {
+ const DataArrayInt *fams(0);
+ try
+ {
+ fams=getFamilyFieldAtLevel(*it);
+ }
+ catch(INTERP_KERNEL::Exception& e) { }
+ if(!fams)
+ continue;
+ std::vector<bool> v(fams->getNumberOfTuples(),false);
+ for(std::set<int>::const_iterator pt=idsRefed.begin();pt!=idsRefed.end();pt++)
+ fams->switchOnTupleEqualTo(*pt,v);
+ MCAuto<DataArrayInt> unfetchedIds(DataArrayInt::BuildListOfSwitchedOff(v));
+ if(!unfetchedIds->empty())
+ {
+ MCAuto<DataArrayInt> newFams(fams->deepCopy());
+ newFams->setPartOfValuesSimple3(0,unfetchedIds->begin(),unfetchedIds->end(),0,1,1);
+ setFamilyFieldArr(*it,newFams);
+ }
+ }
+ removeOrphanFamilies();
+}
+
+/*!
+ * This method only checks that "FAMILLE_ZERO" is orphan (not belonging to a group).
+ */
+void MEDFileMesh::checkOrphanFamilyZero() const
+{
+ for(std::map<std::string, std::vector<std::string> >::const_iterator it=_groups.begin();it!=_groups.end();it++)
+ {
+ if(std::find((*it).second.begin(),(*it).second.end(),DFT_FAM_NAME)!=(*it).second.end())
+ {
+ std::ostringstream oss; oss << "MEDFileMesh::rearrangeFamilies : Groups \"" << (*it).first << "\" is lying on family \"" << DFT_FAM_NAME << "\" !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+}
+
/*!
* Renames a group in \a this mesh.
* \param [in] oldName - a current name of the group to rename.
const DataArrayInt *fieldFamIds=getFamilyFieldAtLevel(meshDimRelToMaxExt);
if(fieldFamIds==0)
throw INTERP_KERNEL::Exception("MEDFileMesh::createGroupOnAll : Family field arr ids is not defined for this level !");
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> famIds=fieldFamIds->getDifferentValues();
+ MCAuto<DataArrayInt> famIds=fieldFamIds->getDifferentValues();
std::vector<std::string> familiesOnWholeGroup;
for(const int *it=famIds->begin();it!=famIds->end();it++)
{
const DataArrayInt *fieldFamIds=getFamilyFieldAtLevel(*it);
if(fieldFamIds)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> famIds3=fieldFamIds->getDifferentValues();
+ MCAuto<DataArrayInt> famIds3=fieldFamIds->getDifferentValues();
std::vector<int> tmp;
std::set_intersection(famIds3->begin(),famIds3->end(),famIds2.begin(),famIds2.end(),std::back_insert_iterator< std::vector<int> >(tmp));
for(std::vector<int>::const_iterator it2=tmp.begin();it2!=tmp.end();it2++)
}
}
+/*!
+ * \param [in] ids ids and group name of the new group to add. The ids should be sorted and different each other (MED file norm).
+ * \parma [in,out] famArr family array on level of interest to be renumbered. The input pointer should be not \c NULL (no check of that will be performed)
+ */
+void MEDFileMesh::addGroupUnderground(bool isNodeGroup, const DataArrayInt *ids, DataArrayInt *famArr)
+{
+ if(!ids)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::addGroup : NULL pointer in input !");
+ std::string grpName(ids->getName());
+ if(grpName.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::addGroup : empty group name ! MED file format do not accept empty group name !");
+ ids->checkStrictlyMonotonic(true);
+ famArr->incrRef(); MCAuto<DataArrayInt> famArrTmp(famArr);
+ std::vector<std::string> grpsNames=getGroupsNames();
+ if(std::find(grpsNames.begin(),grpsNames.end(),grpName)!=grpsNames.end())
+ {
+ std::ostringstream oss; oss << "MEDFileUMesh::addGroup : Group with name \"" << grpName << "\" already exists ! Destroy it before calling this method !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ std::list< MCAuto<DataArrayInt> > allFamIds(getAllNonNullFamilyIds());
+ allFamIds.erase(std::find(allFamIds.begin(),allFamIds.end(),famArrTmp));
+ MCAuto<DataArrayInt> famIds=famArr->selectByTupleIdSafe(ids->begin(),ids->end());
+ MCAuto<DataArrayInt> diffFamIds=famIds->getDifferentValues();
+ std::vector<int> familyIds;
+ std::vector< MCAuto<DataArrayInt> > idsPerfamiliyIds;
+ int maxVal=getTheMaxAbsFamilyId()+1;
+ std::map<std::string,int> families(_families);
+ std::map<std::string, std::vector<std::string> > groups(_groups);
+ std::vector<std::string> fams;
+ bool created(false);
+ for(const int *famId=diffFamIds->begin();famId!=diffFamIds->end();famId++)
+ {
+ MCAuto<DataArrayInt> ids2Tmp=famIds->findIdsEqual(*famId);
+ MCAuto<DataArrayInt> ids2=ids->selectByTupleId(ids2Tmp->begin(),ids2Tmp->end());
+ MCAuto<DataArrayInt> ids1=famArr->findIdsEqual(*famId);
+ MCAuto<DataArrayInt> ret0(ids1->buildSubstractionOptimized(ids2));
+ if(ret0->empty())
+ {
+ bool isFamPresent=false;
+ for(std::list< MCAuto<DataArrayInt> >::const_iterator itl=allFamIds.begin();itl!=allFamIds.end() && !isFamPresent;itl++)
+ isFamPresent=(*itl)->presenceOfValue(*famId);
+ if(!isFamPresent)
+ { familyIds.push_back(*famId); idsPerfamiliyIds.push_back(ret0); fams.push_back(FindOrCreateAndGiveFamilyWithId(families,*famId,created)); } // adding *famId in grp
+ else
+ {
+ familyIds.push_back(isNodeGroup?maxVal:-maxVal); idsPerfamiliyIds.push_back(ids2);
+ std::string locFamName=FindOrCreateAndGiveFamilyWithId(families,isNodeGroup?maxVal:-maxVal,created);
+ fams.push_back(locFamName);
+ if(existsFamily(*famId))
+ {
+ std::string locFamName2=getFamilyNameGivenId(*famId); std::vector<std::string> v(2); v[0]=locFamName2; v[1]=locFamName;
+ ChangeAllGroupsContainingFamily(groups,getFamilyNameGivenId(*famId),v);
+ }
+ maxVal++;
+ } // modifying all other groups on *famId to lie on maxVal and lie the grp on maxVal
+ }
+ else
+ {
+ familyIds.push_back(isNodeGroup?maxVal:-maxVal); idsPerfamiliyIds.push_back(ret0); // modifying all other groups on *famId to lie on maxVal and on maxVal+1
+ familyIds.push_back(isNodeGroup?maxVal+1:-maxVal-1); idsPerfamiliyIds.push_back(ids2);//grp lie only on maxVal+1
+ std::string n2(FindOrCreateAndGiveFamilyWithId(families,isNodeGroup?maxVal+1:-maxVal-1,created)); fams.push_back(n2);
+ if(existsFamily(*famId))
+ {
+ std::string n1(FindOrCreateAndGiveFamilyWithId(families,isNodeGroup?maxVal:-maxVal,created)); std::vector<std::string> v(2); v[0]=n1; v[1]=n2;
+ ChangeAllGroupsContainingFamily(groups,getFamilyNameGivenId(*famId),v);
+ }
+ maxVal+=2;
+ }
+ }
+ for(std::size_t i=0;i<familyIds.size();i++)
+ {
+ DataArrayInt *da=idsPerfamiliyIds[i];
+ famArr->setPartOfValuesSimple3(familyIds[i],da->begin(),da->end(),0,1,1);
+ }
+ _families=families;
+ _groups=groups;
+ _groups[grpName]=fams;
+}
+
void MEDFileMesh::changeAllGroupsContainingFamily(const std::string& familyNameToChange, const std::vector<std::string>& newFamiliesNames)
{
ChangeAllGroupsContainingFamily(_groups,familyNameToChange,newFamiliesNames);
*/
int MEDFileMesh::getFamilyId(const std::string& name) const
{
- std::string oname(name);
- std::map<std::string, int>::const_iterator it=_families.find(oname);
- std::vector<std::string> fams=getFamiliesNames();
+ std::map<std::string, int>::const_iterator it=_families.find(name);
if(it==_families.end())
{
+ std::vector<std::string> fams(getFamiliesNames());
std::ostringstream oss; oss << "No such familyname \"" << name << "\" !\nAvailable families are :";
std::copy(fams.begin(),fams.end(),std::ostream_iterator<std::string>(oss," "));
throw INTERP_KERNEL::Exception(oss.str().c_str());
*/
DataArrayInt *MEDFileMesh::getAllFamiliesIdsReferenced() const
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ MCAuto<DataArrayInt> ret=DataArrayInt::New();
std::set<int> v;
for(std::map<std::string,int>::const_iterator it=_families.begin();it!=_families.end();it++)
v.insert((*it).second);
DataArrayInt *MEDFileMesh::computeAllFamilyIdsInUse() const
{
std::vector<int> famLevs=getFamArrNonEmptyLevelsExt();
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret;
+ MCAuto<DataArrayInt> ret;
for(std::vector<int>::const_iterator it=famLevs.begin();it!=famLevs.end();it++)
{
const DataArrayInt *arr=getFamilyFieldAtLevel(*it);//arr not null due to spec of getFamArrNonEmptyLevelsExt
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> dv=arr->getDifferentValues();
+ MCAuto<DataArrayInt> dv=arr->getDifferentValues();
if((DataArrayInt *) ret)
ret=dv->buildUnion(ret);
else
const DataArrayInt *fam=getFamilyFieldAtLevel(*it);
if(fam)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp=fam->getDifferentValues();
+ MCAuto<DataArrayInt> tmp=fam->getDifferentValues();
std::set<int> r2;
std::set_intersection(tmp->begin(),tmp->end(),allFamIds.begin(),allFamIds.end(),std::inserter(r2,r2.end()));
if(!r2.empty())
}
if(famIdsToRenum.empty())
return true;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> allIds=getAllFamiliesIdsReferenced();
+ MCAuto<DataArrayInt> allIds=getAllFamiliesIdsReferenced();
for(std::map<int,std::vector<int> >::const_iterator it2=famIdsToRenum.begin();it2!=famIdsToRenum.end();it2++)
{
DataArrayInt *fam=const_cast<DataArrayInt *>(getFamilyFieldAtLevel((*it2).first));
addFamilyOnGrp((*it4),newFam);
}
}
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ids=fam->getIdsEqualList(&(*it2).second[0],&(*it2).second[0]+(*it2).second.size());
+ MCAuto<DataArrayInt> ids=fam->findIdsEqualList(&(*it2).second[0],&(*it2).second[0]+(*it2).second.size());
for(const int *id=ids->begin();id!=ids->end();id++)
famIdsToChange[*id]=ren[famIdsToChange[*id]];
}
void MEDFileMesh::normalizeFamIdsTrio()
{
ensureDifferentFamIdsPerLevel();
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> allIds=getAllFamiliesIdsReferenced();
+ MCAuto<DataArrayInt> allIds=getAllFamiliesIdsReferenced();
std::vector<int> levs=getNonEmptyLevelsExt();
std::set<int> levsS(levs.begin(),levs.end());
std::set<std::string> famsFetched;
if(fam)
{
int refId=1;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp=fam->getDifferentValues();
+ MCAuto<DataArrayInt> tmp=fam->getDifferentValues();
std::map<int,int> ren;
for(const int *it=tmp->begin();it!=tmp->end();it++,refId++)
ren[*it]=refId;
if(fam)
{
int refId=-1;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp=fam->getDifferentValues();
+ MCAuto<DataArrayInt> tmp=fam->getDifferentValues();
std::map<int,int> ren;
for(const int *it=tmp->begin();it!=tmp->end();it++,refId--)
ren[*it]=refId;
DataArrayInt *fam=const_cast<DataArrayInt*>(getFamilyFieldAtLevel(*it2));
if(fam)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp=fam->getDifferentValues();
+ MCAuto<DataArrayInt> tmp=fam->getDifferentValues();
fam->fillWithZero();
for(const int *it3=tmp->begin();it3!=tmp->end();it3++)
if(allIds->presenceOfValue(*it3))
void MEDFileMesh::normalizeFamIdsMEDFile()
{
ensureDifferentFamIdsPerLevel();
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> allIds=getAllFamiliesIdsReferenced();
+ MCAuto<DataArrayInt> allIds=getAllFamiliesIdsReferenced();
std::vector<int> levs=getNonEmptyLevelsExt();
std::set<int> levsS(levs.begin(),levs.end());
std::set<std::string> famsFetched;
const DataArrayInt *fam=getFamilyFieldAtLevel(1);
if(fam)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp=fam->getDifferentValues();
+ MCAuto<DataArrayInt> tmp=fam->getDifferentValues();
std::map<int,int> ren;
for(const int *it=tmp->begin();it!=tmp->end();it++,refId++)
ren[*it]=refId;
const DataArrayInt *fam=getFamilyFieldAtLevel(*it2);
if(fam)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp=fam->getDifferentValues();
+ MCAuto<DataArrayInt> tmp=fam->getDifferentValues();
std::map<int,int> ren;
for(const int *it=tmp->begin();it!=tmp->end();it++,refId--)
ren[*it]=refId;
return oss.str();
}
+/*!
+ * This method is nearly like getFamilyFieldAtLevel method. Except that if the array does not exist at the specified level \a meshDimRelToMaxExt
+ * an empty one is created.
+ */
+DataArrayInt *MEDFileMesh::getOrCreateAndGetFamilyFieldAtLevel(int meshDimRelToMaxExt)
+{
+ DataArrayInt *ret(getFamilyFieldAtLevel(meshDimRelToMaxExt));
+ if(ret)
+ return ret;
+ MCAuto<DataArrayInt> arr(DataArrayInt::New());
+ arr->alloc(getSizeAtLevel(meshDimRelToMaxExt),1);
+ arr->fillWithZero();
+ setFamilyFieldArr(meshDimRelToMaxExt,arr);
+ return getFamilyFieldAtLevel(meshDimRelToMaxExt);
+}
+
/*!
* Returns ids of mesh entities contained in a given group of a given dimension.
* \param [in] meshDimRelToMaxExt - a relative dimension of the mesh entities whose ids
if(grpsName.find(std::string(""))!=grpsName.end())
throw INTERP_KERNEL::Exception("MEDFileUMesh::setGroupsAtLevel : groups name must be different empty string !");
int sz=getSizeAtLevel(meshDimRelToMaxExt);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> fam;
+ MCAuto<DataArrayInt> fam;
std::vector< std::vector<int> > fidsOfGroups;
if(!renum)
{
}
else
{
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > grps2(grps.size());
+ std::vector< MCAuto<DataArrayInt> > grps2(grps.size());
for(unsigned int ii=0;ii<grps.size();ii++)
{
grps2[ii]=MEDFileUMeshSplitL1::Renumber(getRevNumberFieldAtLevel(meshDimRelToMaxExt),grps[ii]);
if(!_families.empty())
offset=getMaxAbsFamilyId()+1;
TranslateFamilyIds(meshDimRelToMaxExt==1?offset:-offset,fam,fidsOfGroups);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ids=fam->getDifferentValues();
+ MCAuto<DataArrayInt> ids=fam->getDifferentValues();
appendFamilyEntries(ids,fidsOfGroups,grpsName2);
setFamilyFieldArr(meshDimRelToMaxExt,fam);
}
return ret;
}
+/*!
+ * \sa getAllDistributionOfTypes
+ */
std::vector<int> MEDFileMesh::getDistributionOfTypes(int meshDimRelToMax) const
{
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingMesh> mLev(getGenMeshAtLevel(meshDimRelToMax));
+ MCAuto<MEDCouplingMesh> mLev(getMeshAtLevel(meshDimRelToMax));
return mLev->getDistributionOfTypes();
}
+void MEDFileMesh::loadLLWithAdditionalItems(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ loadLL(fid,mName,dt,it,mrs);
+ loadJointsFromFile(fid);
+ loadEquivalences(fid);
+}
+
void MEDFileMesh::TranslateFamilyIds(int offset, DataArrayInt *famArr, std::vector< std::vector<int> >& famIdsPerGrp)
{
famArr->applyLin(offset>0?1:-1,offset,0);
*/
MEDFileUMesh *MEDFileUMesh::New(const std::string& fileName, MEDFileMeshReadSelector *mrs)
{
- std::vector<std::string> ms=MEDLoader::GetMeshNames(fileName);
+ std::vector<std::string> ms(MEDCoupling::GetMeshNames(fileName));
if(ms.empty())
{
std::ostringstream oss; oss << "MEDFileUMesh::New : no meshes in file \"" << fileName << "\" !";
MEDFileUtilities::CheckFileForRead(fileName);
MEDFileUtilities::AutoFid fid=MEDfileOpen(fileName.c_str(),MED_ACC_RDONLY);
int dt,it;
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
std::string dummy2;
- MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dt,it,dummy2);
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dummy3,dt,it,dummy2);
return new MEDFileUMesh(fid,ms.front(),dt,it,mrs);
}
+/*!
+ * \b WARNING this implementation is dependant from MEDCouplingMappedExtrudedMesh::buildUnstructured !
+ * \sa MEDCouplingMappedExtrudedMesh::buildUnstructured , MEDCouplingMappedExtrudedMesh::build3DUnstructuredMesh
+ */
+MEDFileUMesh *MEDFileUMesh::New(const MEDCouplingMappedExtrudedMesh *mem)
+{
+ if(!mem)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::New : null input vector !");
+ MCAuto<MEDFileUMesh> ret(MEDFileUMesh::New());
+ MCAuto<MEDCouplingUMesh> m3D(mem->buildUnstructured());
+ MCAuto<MEDCouplingUMesh> m2D(mem->getMesh2D()->deepCopy());
+ m2D->zipCoords();
+ m2D->setCoords(m3D->getCoords());
+ ret->setMeshAtLevel(0,m3D);
+ ret->setMeshAtLevel(-1,m2D);
+ ret->setFamilyId(GetSpeStr4ExtMesh(),mem->get2DCellIdForExtrusion());
+ return ret.retn();
+}
+
/*!
* Returns an empty instance of MEDFileUMesh.
* \return MEDFileUMesh * - a new instance of MEDFileUMesh. The caller is to delete this
*/
MEDFileUMesh *MEDFileUMesh::LoadPartOf(med_idt fid, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMesh> ret(MEDFileUMesh::New());
+ MCAuto<MEDFileUMesh> ret(MEDFileUMesh::New());
ret->loadPartUMeshFromFile(fid,mName,types,slicPerTyp,dt,it,mrs);
return ret.retn();
}
std::size_t MEDFileUMesh::getHeapMemorySizeWithoutChildren() const
{
std::size_t ret(MEDFileMesh::getHeapMemorySizeWithoutChildren());
- ret+=_ms.capacity()*(sizeof(MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1>));
+ ret+=_ms.capacity()*(sizeof(MCAuto<MEDFileUMeshSplitL1>));
return ret;
}
ret.push_back((const DataArrayInt *)_rev_num_coords);
ret.push_back((const DataArrayAsciiChar *)_name_coords);
ret.push_back((const PartDefinition *)_part_coords);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
ret.push_back((const MEDFileUMeshSplitL1*) *it);
return ret;
}
-MEDFileMesh *MEDFileUMesh::shallowCpy() const
+MEDFileUMesh *MEDFileUMesh::shallowCpy() const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMesh> ret=new MEDFileUMesh(*this);
+ MCAuto<MEDFileUMesh> ret(new MEDFileUMesh(*this));
return ret.retn();
}
return new MEDFileUMesh;
}
-MEDFileMesh *MEDFileUMesh::deepCpy() const
+MEDFileUMesh *MEDFileUMesh::deepCopy() const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMesh> ret=new MEDFileUMesh(*this);
+ MCAuto<MEDFileUMesh> ret(new MEDFileUMesh(*this));
+ ret->deepCpyEquivalences(*this);
if((const DataArrayDouble*)_coords)
- ret->_coords=_coords->deepCpy();
+ ret->_coords=_coords->deepCopy();
if((const DataArrayInt*)_fam_coords)
- ret->_fam_coords=_fam_coords->deepCpy();
+ ret->_fam_coords=_fam_coords->deepCopy();
if((const DataArrayInt*)_num_coords)
- ret->_num_coords=_num_coords->deepCpy();
+ ret->_num_coords=_num_coords->deepCopy();
if((const DataArrayInt*)_rev_num_coords)
- ret->_rev_num_coords=_rev_num_coords->deepCpy();
+ ret->_rev_num_coords=_rev_num_coords->deepCopy();
if((const DataArrayAsciiChar*)_name_coords)
- ret->_name_coords=_name_coords->deepCpy();
+ ret->_name_coords=_name_coords->deepCopy();
std::size_t i=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,i++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,i++)
{
if((const MEDFileUMeshSplitL1 *)(*it))
- ret->_ms[i]=(*it)->deepCpy(ret->_coords);
+ ret->_ms[i]=(*it)->deepCopy(ret->_coords);
}
+ if((const PartDefinition*)_part_coords)
+ ret->_part_coords=_part_coords->deepCopy();
return ret.retn();
}
return false;
}
}
- return true;
+ const PartDefinition *pd0(_part_coords),*pd1(otherC->_part_coords);
+ if(!pd0 && !pd1)
+ return true;
+ if((!pd0 && pd1) || (pd0 && !pd1))
+ {
+ what=std::string("node part def is defined only for one among this or other !");
+ return false;
+ }
+ return pd0->isEqual(pd1,what);
+}
+
+/*!
+ * Check that the current object MEDFileUMesh is consistent. This does not check the optional renumbering of
+ * nodes and cells. This last item is important for SMESH, see checkSMESHConsistency().
+ * \throw if any internal part (i.e. mesh sub-levels and single geometric-type meshes) are inconsistent
+ * \throw if internal family array is inconsistent
+ * \sa checkSMESHConsistency()
+ */
+void MEDFileUMesh::checkConsistency() const
+{
+ if(!_coords || !_coords->isAllocated())
+ {
+ if(!_ms.size())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::checkConsistency(): coords are null but some mesh parts are present!");
+ if (!_fam_coords)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::checkConsistency(): coords are null but not the internal node family array!");
+ if (!_num_coords || !_rev_num_coords)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::checkConsistency(): coords are null but not the internal node numbering array!");
+ }
+ else
+ {
+ int nbCoo = _coords->getNumberOfTuples();
+ if (_fam_coords)
+ _fam_coords->checkNbOfTuplesAndComp(nbCoo,1,"MEDFileUMesh::checkConsistency(): inconsistent internal node family array!");
+ if (_num_coords)
+ {
+ _num_coords->checkNbOfTuplesAndComp(nbCoo,1,"MEDFileUMesh::checkConsistency(): inconsistent internal node numbering array!");
+ int pos;
+ int maxValue=_num_coords->getMaxValue(pos);
+ if (!_rev_num_coords || _rev_num_coords->getNumberOfTuples() != (maxValue+1))
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::checkConsistency(): inconsistent internal revert node numbering array!");
+ }
+ if ((_num_coords && !_rev_num_coords) || (!_num_coords && _rev_num_coords))
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::checkConsistency(): inconsistent internal numbering arrays (one is null)!");
+ if (_num_coords && !_num_coords->hasUniqueValues())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::checkConsistency(): inconsistent internal node numbering array: duplicates found!");
+ if (_name_coords)
+ _name_coords->checkNbOfTuplesAndComp(nbCoo,MED_SNAME_SIZE,"MEDFileUMesh::checkConsistency(): inconsistent internal coord name array!");
+ // Now sub part check:
+ for (std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();
+ it != _ms.end(); it++)
+ (*it)->checkConsistency();
+ }
+}
+
+/**
+ * Same as checkConsistency() but also checks that optional entities (edges, faces, volumes) numbers are
+ * consistent, i.e. the numbering is either set to null for all sub-levels (thus letting SMESH numbers the
+ * entities as it likes), or non overlapping between all sub-levels.
+ * \throw if the condition above is not respected
+ */
+void MEDFileUMesh::checkSMESHConsistency() const
+{
+ checkConsistency();
+ // For all sub-levels, numbering is either always null or with void intersection:
+ if (_ms.size())
+ {
+ std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();
+ std::vector< const DataArrayInt * > v;
+ bool voidOrNot = ((*it)->_num == 0);
+ for (it++; it != _ms.end(); it++)
+ if( ((*it)->_num == 0) != voidOrNot )
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::checkConsistency(): inconsistent numbering between mesh sub-levels!");
+ else if (!voidOrNot)
+ v.push_back((*it)->_num);
+ if (!voidOrNot)
+ {
+ // don't forget the 1st one:
+ v.push_back(_ms[0]->_num);
+ MCAuto<DataArrayInt> inter = DataArrayInt::BuildIntersection(v);
+ if (inter->getNumberOfTuples())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::checkConsistency(): overlapping entity numbering between mesh sub-levels!");
+ }
+ }
+}
+
+/**
+ * Reset optional node and cell numbering for all sub levels in this. This particularly useful to make
+ * sure SMESH will handle the mesh correctly, as it tries to use those numbers if given.
+ */
+void MEDFileUMesh::clearNodeAndCellNumbers()
+{
+ _num_coords = 0;
+ _rev_num_coords = 0;
+ for (std::vector< MCAuto<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();
+ it != _ms.end(); it++)
+ {
+ (*it)->_num = 0;
+ (*it)->_rev_num = 0;
+ }
}
/*!
const DataArrayAsciiChar *namc1=_name_coords;
if(namc1)
(const_cast<DataArrayAsciiChar *>(namc1))->setName("");//This parameter is not discriminant for comparison
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
{
const MEDFileUMeshSplitL1 *tmp=(*it);
if(tmp)
void MEDFileUMesh::setName(const std::string& name)
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
if((MEDFileUMeshSplitL1 *)(*it)!=0)
(*it)->setName(name);
MEDFileMesh::setName(name);
MEDFileUMesh::MEDFileUMesh(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
try
{
- loadUMeshFromFile(fid,mName,dt,it,mrs);
+ loadLLWithAdditionalItems(fid,mName,dt,it,mrs);
}
catch(INTERP_KERNEL::Exception& e)
{
* This method loads only a part of specified cells (given by range of cell ID per geometric type)
* See MEDFileUMesh::LoadPartOf for detailed description.
*
- * \sa loadUMeshFromFile
+ * \sa loadLL
*/
void MEDFileUMesh::loadPartUMeshFromFile(med_idt fid, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
{
MEDFileUMeshL2 loaderl2;
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
int dummy0,dummy1;
std::string dummy2;
- int mid(MEDFileUMeshL2::GetMeshIdFromName(fid,mName,meshType,dummy0,dummy1,dummy2));
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ int mid(MEDFileUMeshL2::GetMeshIdFromName(fid,mName,meshType,dummy3,dummy0,dummy1,dummy2));
if(meshType!=UNSTRUCTURED)
{
std::ostringstream oss; oss << "loadPartUMeshFromFile : Trying to load as unstructured an existing mesh with name '" << mName << "' !";
}
/*!
- * This method loads \b all \b the \b mesh \a mName in the file with \a fid descriptor.
- *
- * \sa loadPartUMeshFromFile
+ * \brief Write joints in a file
*/
-void MEDFileUMesh::loadUMeshFromFile(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+void MEDFileMesh::writeJoints(med_idt fid) const
{
- MEDFileUMeshL2 loaderl2;
- ParaMEDMEM::MEDCouplingMeshType meshType;
- int dummy0,dummy1;
- std::string dummy2;
- int mid(MEDFileUMeshL2::GetMeshIdFromName(fid,mName,meshType,dummy0,dummy1,dummy2));
- if(meshType!=UNSTRUCTURED)
- {
- std::ostringstream oss; oss << "Trying to load as unstructured an existing mesh with name '" << mName << "' !";
- throw INTERP_KERNEL::Exception(oss.str().c_str());
- }
- loaderl2.loadAll(fid,mid,mName,dt,it,mrs);
- dispatchLoadedPart(fid,loaderl2,mName,mrs);
-
+ if ( (const MEDFileJoints*) _joints )
+ _joints->write(fid);
}
-void MEDFileUMesh::dispatchLoadedPart(med_idt fid, const MEDFileUMeshL2& loaderl2, const std::string& mName, MEDFileMeshReadSelector *mrs)
+/*!
+ * \brief Load joints in a file or use provided ones
+ */
+//================================================================================
+/*!
+ * \brief Load joints in a file or use provided ones
+ * \param [in] fid - MED file descriptor
+ * \param [in] toUseInstedOfReading - optional joints to use instead of reading,
+ * Usually this joints are those just read by another iteration
+ * of namesake mesh, when this method is called by MEDFileMeshMultiTS::New()
+ */
+//================================================================================
+
+void MEDFileMesh::loadJointsFromFile(med_idt fid, MEDFileJoints* toUseInstedOfReading)
+{
+ if ( toUseInstedOfReading )
+ setJoints( toUseInstedOfReading );
+ else
+ _joints = MEDFileJoints::New( fid, _name );
+}
+
+void MEDFileMesh::loadEquivalences(med_idt fid)
+{
+ int nbOfEq(MEDFileEquivalences::PresenceOfEquivalences(fid,_name));
+ if(nbOfEq>0)
+ _equiv=MEDFileEquivalences::Load(fid,nbOfEq,this);
+}
+
+void MEDFileMesh::deepCpyEquivalences(const MEDFileMesh& other)
+{
+ const MEDFileEquivalences *equiv(other._equiv);
+ if(equiv)
+ _equiv=equiv->deepCopy(this);
+}
+
+bool MEDFileMesh::areEquivalencesEqual(const MEDFileMesh *other, std::string& what) const
+{
+ const MEDFileEquivalences *thisEq(_equiv),*otherEq(other->_equiv);
+ if(!thisEq && !otherEq)
+ return true;
+ if(thisEq && otherEq)
+ return thisEq->isEqual(otherEq,what);
+ else
+ {
+ what+="Equivalence differs : defined in this and not in other (or reversely) !";
+ return false;
+ }
+}
+
+void MEDFileMesh::getEquivalencesRepr(std::ostream& oss) const
+{
+ const MEDFileEquivalences *equiv(_equiv);
+ if(!equiv)
+ return ;
+ oss << "(******************************)\n(* EQUIVALENCES OF THE MESH : *)\n(******************************)\n";
+ _equiv->getRepr(oss);
+}
+
+void MEDFileMesh::checkCartesian() const
+{
+ if(getAxisType()!=AX_CART)
+ {
+ std::ostringstream oss; oss << "MEDFileMesh::checkCartesian : request for method that is dedicated to a cartesian convention ! But you are not in cartesian convention (" << DataArray::GetAxisTypeRepr(getAxisType()) << ").";
+ oss << std::endl << "To perform operation you have two possiblities :" << std::endl;
+ oss << " - call setAxisType(AX_CART)" << std::endl;
+ oss << " - call cartesianize()";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+}
+
+/*!
+ * \brief Return number of joints, which is equal to number of adjacent mesh domains
+ */
+int MEDFileMesh::getNumberOfJoints() const
+{
+ return ( (const MEDFileJoints *) _joints ) ? _joints->getNumberOfJoints() : 0;
+}
+
+/*!
+ * \brief Return joints with all adjacent mesh domains
+ */
+MEDFileJoints * MEDFileMesh::getJoints() const
+{
+ return const_cast<MEDFileJoints*>(& (*_joints));
+}
+
+void MEDFileMesh::setJoints( MEDFileJoints* joints )
+{
+ if ( joints != _joints )
+ {
+ _joints = joints;
+ if ( joints )
+ joints->incrRef();
+ }
+}
+
+/*!
+ * This method loads \b all \b the \b mesh \a mName in the file with \a fid descriptor.
+ *
+ * \sa loadPartUMeshFromFile
+ */
+void MEDFileUMesh::loadLL(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+{
+ MEDFileUMeshL2 loaderl2;
+ MEDCoupling::MEDCouplingMeshType meshType;
+ int dummy0,dummy1;
+ std::string dummy2;
+ MEDCoupling::MEDCouplingAxisType axType;
+ int mid(MEDFileUMeshL2::GetMeshIdFromName(fid,mName,meshType,axType,dummy0,dummy1,dummy2));
+ setAxisType(axType);
+ if(meshType!=UNSTRUCTURED)
+ {
+ std::ostringstream oss; oss << "Trying to load as unstructured an existing mesh with name '" << mName << "' !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ loaderl2.loadAll(fid,mid,mName,dt,it,mrs);
+ dispatchLoadedPart(fid,loaderl2,mName,mrs);
+}
+
+void MEDFileUMesh::dispatchLoadedPart(med_idt fid, const MEDFileUMeshL2& loaderl2, const std::string& mName, MEDFileMeshReadSelector *mrs)
{
int lev=loaderl2.getNumberOfLevels();
_ms.resize(lev);
MEDLoaderBase::safeStrCpy2(c.c_str(),MED_SNAME_SIZE-1,comp+i*MED_SNAME_SIZE,_too_long_str);//MED_TAILLE_PNOM-1 to avoid to write '\0' on next compo
MEDLoaderBase::safeStrCpy2(u.c_str(),MED_SNAME_SIZE-1,unit+i*MED_SNAME_SIZE,_too_long_str);//MED_TAILLE_PNOM-1 to avoid to write '\0' on next compo
}
- MEDmeshCr(fid,maa,spaceDim,mdim,MED_UNSTRUCTURED_MESH,desc,"",MED_SORT_DTIT,MED_CARTESIAN,comp,unit);
- MEDmeshUniversalNameWr(fid,maa);
+ MEDFILESAFECALLERWR0(MEDmeshCr,(fid,maa,spaceDim,mdim,MED_UNSTRUCTURED_MESH,desc,"",MED_SORT_DTIT,MEDFileMeshL2::TraduceAxisTypeRev(getAxisType()),comp,unit));
+ if(_univ_wr_status)
+ MEDFILESAFECALLERWR0(MEDmeshUniversalNameWr,(fid,maa));
std::string meshName(MEDLoaderBase::buildStringFromFortran(maa,MED_NAME_SIZE));
MEDFileUMeshL2::WriteCoords(fid,meshName,_iteration,_order,_time,_coords,_fam_coords,_num_coords,_name_coords);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
if((const MEDFileUMeshSplitL1 *)(*it)!=0)
(*it)->write(fid,meshName,mdim);
MEDFileUMeshL2::WriteFamiliesAndGrps(fid,meshName,_families,_groups,_too_long_str);
{
std::vector<int> ret;
int lev=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev--)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev--)
if((const MEDFileUMeshSplitL1 *)(*it)!=0)
if(!(*it)->empty())
ret.push_back(lev);
if(famCoo)
ret.push_back(1);
int lev=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev--)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev--)
{
const MEDFileUMeshSplitL1 *cur(*it);
if(cur)
if(numCoo)
ret.push_back(1);
int lev=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev--)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev--)
{
const MEDFileUMeshSplitL1 *cur(*it);
if(cur)
if(nameCoo)
ret.push_back(1);
int lev=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev--)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev--)
{
const MEDFileUMeshSplitL1 *cur(*it);
if(cur)
return ret;
}
-/*!
- * Returns all relative mesh levels (**excluding nodes**) where a given group is defined.
- * To include nodes, call getGrpNonEmptyLevelsExt() method.
- * \param [in] grp - the name of the group of interest.
- * \return std::vector<int> - a sequence of the relative dimensions.
- */
-std::vector<int> MEDFileUMesh::getGrpNonEmptyLevels(const std::string& grp) const
-{
- std::vector<std::string> fams=getFamiliesOnGroup(grp);
- return getFamsNonEmptyLevels(fams);
-}
-
-/*!
- * Returns all relative mesh levels (including nodes) where a given group is defined.
- * \param [in] grp - the name of the group of interest.
- * \return std::vector<int> - a sequence of the relative dimensions.
- */
-std::vector<int> MEDFileUMesh::getGrpNonEmptyLevelsExt(const std::string& grp) const
-{
- std::vector<std::string> fams=getFamiliesOnGroup(grp);
- return getFamsNonEmptyLevelsExt(fams);
-}
-
-/*!
- * Returns all relative mesh levels (**excluding nodes**) where a given family is defined.
- * To include nodes, call getFamNonEmptyLevelsExt() method.
- * \param [in] fam - the name of the family of interest.
- * \return std::vector<int> - a sequence of the relative dimensions.
- */
-std::vector<int> MEDFileUMesh::getFamNonEmptyLevels(const std::string& fam) const
-{
- std::vector<std::string> fams(1,std::string(fam));
- return getFamsNonEmptyLevels(fams);
-}
-
-/*!
- * Returns all relative mesh levels (including nodes) where a given family is defined.
- * \param [in] fam - the name of the family of interest.
- * \return std::vector<int> - a sequence of the relative dimensions.
- */
-std::vector<int> MEDFileUMesh::getFamNonEmptyLevelsExt(const std::string& fam) const
-{
- std::vector<std::string> fams(1,std::string(fam));
- return getFamsNonEmptyLevelsExt(fams);
-}
-
-/*!
- * Returns all relative mesh levels (**excluding nodes**) where given groups are defined.
- * To include nodes, call getGrpsNonEmptyLevelsExt() method.
- * \param [in] grps - a sequence of names of the groups of interest.
- * \return std::vector<int> - a sequence of the relative dimensions.
- */
-std::vector<int> MEDFileUMesh::getGrpsNonEmptyLevels(const std::vector<std::string>& grps) const
-{
- std::vector<std::string> fams=getFamiliesOnGroups(grps);
- return getFamsNonEmptyLevels(fams);
-}
-
-/*!
- * Returns all relative mesh levels (including nodes) where given groups are defined.
- * \param [in] grps - a sequence of names of the groups of interest.
- * \return std::vector<int> - a sequence of the relative dimensions.
- */
-std::vector<int> MEDFileUMesh::getGrpsNonEmptyLevelsExt(const std::vector<std::string>& grps) const
-{
- std::vector<std::string> fams=getFamiliesOnGroups(grps);
- return getFamsNonEmptyLevelsExt(fams);
-}
-
/*!
* Returns all relative mesh levels (**excluding nodes**) where given families are defined.
* To include nodes, call getFamsNonEmptyLevelsExt() method.
std::vector<int> MEDFileUMesh::getFamsNonEmptyLevels(const std::vector<std::string>& fams) const
{
std::vector<int> ret;
- std::vector<int> levs=getNonEmptyLevels();
- std::vector<int> famIds=getFamiliesIds(fams);
+ std::vector<int> levs(getNonEmptyLevels());
+ std::vector<int> famIds(getFamiliesIds(fams));
for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
if(_ms[-(*it)]->presenceOfOneFams(famIds))
ret.push_back(*it);
*/
std::vector<int> MEDFileUMesh::getFamsNonEmptyLevelsExt(const std::vector<std::string>& fams) const
{
- std::vector<int> ret0=getFamsNonEmptyLevels(fams);
- const DataArrayInt *famCoords=_fam_coords;
+ std::vector<int> ret0(getFamsNonEmptyLevels(fams));
+ const DataArrayInt *famCoords(_fam_coords);
if(!famCoords)
return ret0;
- std::vector<int> famIds=getFamiliesIds(fams);
+ std::vector<int> famIds(getFamiliesIds(fams));
if(famCoords->presenceOfValue(famIds))
{
std::vector<int> ret(ret0.size()+1);
return ret0;
}
-/*!
- * Returns names of groups that partly or fully appear on the level \a meshDimRelToMaxExt.
- * \param [in] meshDimRelToMaxExt - a relative dimension of interest.
- * \return std::vector<std::string> - a sequence of group names at \a meshDimRelToMaxExt
- * level.
- */
-std::vector<std::string> MEDFileUMesh::getGroupsOnSpecifiedLev(int meshDimRelToMaxExt) const
-{
- std::vector<std::string> ret;
- std::vector<std::string> allGrps=getGroupsNames();
- for(std::vector<std::string>::const_iterator it=allGrps.begin();it!=allGrps.end();it++)
- {
- std::vector<int> levs=getGrpNonEmptyLevelsExt((*it));
- if(std::find(levs.begin(),levs.end(),meshDimRelToMaxExt)!=levs.end())
- ret.push_back(*it);
- }
- return ret;
-}
-
int MEDFileUMesh::getMaxAbsFamilyIdInArrays() const
{
int ret=-std::numeric_limits<int>::max(),tmp=-1;
int val=_fam_coords->getMaxValue(tmp);
ret=std::max(ret,std::abs(val));
}
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
{
if((const MEDFileUMeshSplitL1 *)(*it))
{
int val=_fam_coords->getMaxValue(tmp);
ret=std::max(ret,val);
}
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
{
if((const MEDFileUMeshSplitL1 *)(*it))
{
int val=_fam_coords->getMinValue(tmp);
ret=std::min(ret,val);
}
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
{
if((const MEDFileUMeshSplitL1 *)(*it))
{
int MEDFileUMesh::getMeshDimension() const
{
int lev=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,lev++)
if((const MEDFileUMeshSplitL1 *)(*it)!=0)
return (*it)->getMeshDimension()+lev;
throw INTERP_KERNEL::Exception("MEDFileUMesh::getMeshDimension : impossible to find a mesh dimension !");
}
oss << std::endl << std::endl;
getFamilyRepr(oss);
+ getEquivalencesRepr(oss);
return oss.str();
}
{
if(meshDimRelToMaxExt==1)
return _fam_coords;
- const MEDFileUMeshSplitL1 *l1=getMeshAtLevSafe(meshDimRelToMaxExt);
+ const MEDFileUMeshSplitL1 *l1(getMeshAtLevSafe(meshDimRelToMaxExt));
+ return l1->getFamilyField();
+}
+
+DataArrayInt *MEDFileUMesh::getFamilyFieldAtLevel(int meshDimRelToMaxExt)
+{
+ if(meshDimRelToMaxExt==1)
+ return _fam_coords;
+ MEDFileUMeshSplitL1 *l1(getMeshAtLevSafe(meshDimRelToMaxExt));
return l1->getFamilyField();
}
int MEDFileUMesh::getNumberOfNodes() const
{
- const DataArrayDouble *coo=_coords;
+ const DataArrayDouble *coo(_coords);
if(!coo)
throw INTERP_KERNEL::Exception(" MEDFileUMesh::getNumberOfNodes : no coords set !");
return coo->getNumberOfTuples();
}
+int MEDFileUMesh::getNumberOfCellsAtLevel(int meshDimRelToMaxExt) const
+{
+ const MEDFileUMeshSplitL1 *l1(getMeshAtLevSafe(meshDimRelToMaxExt));
+ return l1->getNumberOfCells();
+}
+
bool MEDFileUMesh::hasImplicitPart() const
{
return false;
else
{
const DataArrayInt *arr(globs->getProfile(st[i].getPflName()));
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> m2(dynamic_cast<MEDCoupling1GTUMesh *>(m->buildPartOfMySelf(arr->begin(),arr->end(),true)));
+ MCAuto<MEDCoupling1GTUMesh> m2(dynamic_cast<MEDCoupling1GTUMesh *>(m->buildPartOfMySelf(arr->begin(),arr->end(),true)));
m2->computeNodeIdsAlg(nodesFetched);
}
}
}
+MEDFileMesh *MEDFileUMesh::cartesianize() const
+{
+ if(getAxisType()==AX_CART)
+ {
+ incrRef();
+ return const_cast<MEDFileUMesh *>(this);
+ }
+ else
+ {
+ MCAuto<MEDFileUMesh> ret(new MEDFileUMesh(*this));
+ const DataArrayDouble *coords(_coords);
+ if(!coords)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::cartesianize : coordinates are null !");
+ MCAuto<DataArrayDouble> coordsCart(_coords->cartesianize(getAxisType()));
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::iterator it=ret->_ms.begin();it!=ret->_ms.end();it++)
+ if((const MEDFileUMeshSplitL1 *)(*it))
+ *it=(*it)->shallowCpyUsingCoords(coordsCart);
+ ret->_coords=coordsCart;
+ ret->setAxisType(AX_CART);
+ return ret.retn();
+ }
+}
+
/*!
* Returns the optional numbers of mesh entities of a given dimension transformed using
* DataArrayInt::invertArrayN2O2O2N().
*/
DataArrayDouble *MEDFileUMesh::getCoords() const
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp(_coords);
+ checkCartesian();
+ MCAuto<DataArrayDouble> tmp(_coords);
if((DataArrayDouble *)tmp)
{
return tmp;
*/
MEDCouplingUMesh *MEDFileUMesh::getGroup(int meshDimRelToMaxExt, const std::string& grp, bool renum) const
{
+ checkCartesian();
synchronizeTinyInfoOnLeaves();
std::vector<std::string> tmp(1);
tmp[0]=grp;
*/
MEDCouplingUMesh *MEDFileUMesh::getGroups(int meshDimRelToMaxExt, const std::vector<std::string>& grps, bool renum) const
{
+ checkCartesian();
synchronizeTinyInfoOnLeaves();
std::vector<std::string> fams2=getFamiliesOnGroups(grps);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> zeRet=getFamilies(meshDimRelToMaxExt,fams2,renum);
+ MCAuto<MEDCouplingUMesh> zeRet=getFamilies(meshDimRelToMaxExt,fams2,renum);
if(grps.size()==1 && ((MEDCouplingUMesh *)zeRet))
zeRet->setName(grps[0]);
return zeRet.retn();
*/
MEDCouplingUMesh *MEDFileUMesh::getFamily(int meshDimRelToMaxExt, const std::string& fam, bool renum) const
{
+ checkCartesian();
synchronizeTinyInfoOnLeaves();
std::vector<std::string> tmp(1);
tmp[0]=fam;
*/
MEDCouplingUMesh *MEDFileUMesh::getFamilies(int meshDimRelToMaxExt, const std::vector<std::string>& fams, bool renum) const
{
+ checkCartesian();
synchronizeTinyInfoOnLeaves();
if(meshDimRelToMaxExt==1)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arr=getFamiliesArr(1,fams,renum);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New();
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> c=_coords->selectByTupleId(arr->getConstPointer(),arr->getConstPointer()+arr->getNbOfElems());
+ MCAuto<DataArrayInt> arr=getFamiliesArr(1,fams,renum);
+ MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New();
+ MCAuto<DataArrayDouble> c=_coords->selectByTupleId(arr->getConstPointer(),arr->getConstPointer()+arr->getNbOfElems());
ret->setCoords(c);
return ret.retn();
}
std::vector<int> famIds=getFamiliesIds(fams);
const MEDFileUMeshSplitL1 *l1=getMeshAtLevSafe(meshDimRelToMaxExt);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> zeRet;
+ MCAuto<MEDCouplingUMesh> zeRet;
if(!famIds.empty())
zeRet=l1->getFamilyPart(&famIds[0],&famIds[0]+famIds.size(),renum);
else
{
if((const DataArrayInt *)_fam_coords)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da;
+ MCAuto<DataArrayInt> da;
if(!famIds.empty())
- da=_fam_coords->getIdsEqualList(&famIds[0],&famIds[0]+famIds.size());
+ da=_fam_coords->findIdsEqualList(&famIds[0],&famIds[0]+famIds.size());
else
- da=_fam_coords->getIdsEqualList(0,0);
+ da=_fam_coords->findIdsEqualList(0,0);
if(renum)
return MEDFileUMeshSplitL1::Renumber(_num_coords,da);
else
* \return MEDCouplingUMesh * - a pointer to MEDCouplingUMesh that the caller is to
* delete using decrRef() as it is no more needed.
* \throw If there are no mesh entities of \a meshDimRelToMaxExt dimension in \a this mesh.
- * \sa getGenMeshAtLevel()
*/
MEDCouplingUMesh *MEDFileUMesh::getMeshAtLevel(int meshDimRelToMaxExt, bool renum) const
{
+ checkCartesian();
synchronizeTinyInfoOnLeaves();
if(meshDimRelToMaxExt==1)
{
if(!renum)
{
MEDCouplingUMesh *umesh=MEDCouplingUMesh::New();
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> cc=_coords->deepCpy();
+ MCAuto<DataArrayDouble> cc=_coords->deepCopy();
umesh->setCoords(cc);
MEDFileUMeshSplitL1::ClearNonDiscrAttributes(umesh);
umesh->setName(getName());
return l1->getWholeMesh(renum);
}
-/*!
- * Returns a MEDCouplingUMesh of a given relative dimension.
- * \warning If \a meshDimRelToMaxExt == 1 (which means nodes), the returned mesh **is not
- * valid**. This is a feature, because MEDLoader does not create cells that do not exist!
- * To build a valid MEDCouplingUMesh from the returned one in this case,
- * call MEDCouplingUMesh::Build0DMeshFromCoords().
- * \param [in] meshDimRelToMax - the relative dimension of interest.
- * \param [in] renum - if \c true, the returned mesh is permuted according to the
- * optional numbers of mesh entities.
- * \return MEDCouplingMesh * - a pointer to MEDCouplingUMesh that the caller is to
- * delete using decrRef() as it is no more needed.
- * \throw If there are no mesh entities of \a meshDimRelToMax dimension in \a this mesh.
- * \sa getMeshAtLevel()
- */
-MEDCouplingMesh *MEDFileUMesh::getGenMeshAtLevel(int meshDimRelToMax, bool renum) const
-{
- return getMeshAtLevel(meshDimRelToMax,renum);
-}
-
std::vector<int> MEDFileUMesh::getDistributionOfTypes(int meshDimRelToMax) const
{
const MEDFileUMeshSplitL1 *l1(getMeshAtLevSafe(meshDimRelToMax));
*/
void MEDFileUMesh::forceComputationOfParts() const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
{
const MEDFileUMeshSplitL1 *elt(*it);
if(elt)
*/
std::vector<MEDCoupling1GTUMesh *> MEDFileUMesh::getDirectUndergroundSingleGeoTypeMeshes(int meshDimRelToMax) const
{
+ checkCartesian();
const MEDFileUMeshSplitL1 *sp(getMeshAtLevSafe(meshDimRelToMax));
return sp->getDirectUndergroundSingleGeoTypeMeshes();
}
*/
MEDCoupling1GTUMesh *MEDFileUMesh::getDirectUndergroundSingleGeoTypeMesh(INTERP_KERNEL::NormalizedCellType gt) const
{
- const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(gt);
+ checkCartesian();
+ const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(gt));
int lev=(int)cm.getDimension()-getMeshDimension();
const MEDFileUMeshSplitL1 *sp(getMeshAtLevSafe(lev));
return sp->getDirectUndergroundSingleGeoTypeMesh(gt);
}
+/*!
+ * This method returns for each geo types in \a this number of cells with this geo type.
+ * This method returns info as a vector of pair. The first element of pair is geo type and the second the number of cells associated.
+ * This method also returns the number of nodes of \a this (key associated is NORM_ERROR)
+ *
+ * \sa getDistributionOfTypes
+ */
+std::vector< std::pair<int,int> > MEDFileUMesh::getAllDistributionOfTypes() const
+{
+ std::vector< std::pair<int,int> > ret;
+ std::vector<int> nel(getNonEmptyLevels());
+ for(std::vector<int>::reverse_iterator it=nel.rbegin();it!=nel.rend();it++)
+ {
+ std::vector<INTERP_KERNEL::NormalizedCellType> gt(getGeoTypesAtLevel(*it));
+ for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator it1=gt.begin();it1!=gt.end();it1++)
+ {
+ int nbCells(getNumberOfCellsWithType(*it1));
+ ret.push_back(std::pair<int,int>(*it1,nbCells));
+ }
+ }
+ ret.push_back(std::pair<int,int>(INTERP_KERNEL::NORM_ERROR,getNumberOfNodes()));
+ return ret;
+}
+
/*!
* Given a relative level \a meshDimRelToMax it returns the sorted vector of geometric types present in \a this.
* \throw if the reqsuested \a meshDimRelToMax does not exist.
return sp->getGeoTypes();
}
+int MEDFileUMesh::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(ct);
+ const MEDFileUMeshSplitL1 *sp(getMeshAtLevSafe( ((int)cm.getDimension())-getMeshDimension() ));
+ return sp->getNumberOfCellsWithType(ct);
+}
+
/*!
* This method extracts from whole family field ids the part relative to the input parameter \a gt.
* \param [in] gt - the geometric type for which the family field is asked.
throw INTERP_KERNEL::Exception("Dimension request is invalid (>1) !");
int tracucedRk=-meshDimRelToMaxExt;
if(tracucedRk>=(int)_ms.size())
- throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !");
+ throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !");
if((const MEDFileUMeshSplitL1 *)_ms[tracucedRk]==0)
throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !");
return _ms[tracucedRk];
throw INTERP_KERNEL::Exception("Dimension request is invalid (>1) !");
int tracucedRk=-meshDimRelToMaxExt;
if(tracucedRk>=(int)_ms.size())
- throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !");
+ throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !");
if((const MEDFileUMeshSplitL1 *)_ms[tracucedRk]==0)
throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !");
return _ms[tracucedRk];
if(-meshDimRelToMax>=(int)_ms.size())
throw INTERP_KERNEL::Exception("MEDFileUMesh::checkMeshDimCoherency : The meshdim of mesh is not managed by 'this' !");
int i=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,i++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++,i++)
{
if(((const MEDFileUMeshSplitL1*) (*it))!=0)
{
{
if(!coords)
throw INTERP_KERNEL::Exception("MEDFileUMesh::setCoords : null pointer in input !");
+ if(coords==(DataArrayDouble *)_coords)
+ return ;
coords->checkAllocated();
- int nbOfTuples=coords->getNumberOfTuples();
+ int nbOfTuples(coords->getNumberOfTuples());
_coords=coords;
coords->incrRef();
_fam_coords=DataArrayInt::New();
_fam_coords->alloc(nbOfTuples,1);
_fam_coords->fillWithZero();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
+ _num_coords=0; _rev_num_coords=0; _name_coords=0;
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
+ if((MEDFileUMeshSplitL1 *)(*it))
+ (*it)->setCoords(coords);
+}
+
+/*!
+ * Change coords without changing anything concerning families and numbering on nodes.
+ */
+void MEDFileUMesh::setCoordsForced(DataArrayDouble *coords)
+{
+ if(!coords)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::setCoordsForced : null pointer in input !");
+ if(coords==(DataArrayDouble *)_coords)
+ return ;
+ coords->checkAllocated();
+ int nbOfTuples(coords->getNumberOfTuples());
+ if(_coords.isNull())
+ {
+ _coords=coords;
+ coords->incrRef();
+ }
+ else
+ {
+ int oldNbTuples(_coords->getNumberOfTuples());
+ if(oldNbTuples!=nbOfTuples)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::setCoordsForced : number of tuples is not the same -> invoke setCoords instead !");
+ _coords=coords;
+ coords->incrRef();
+ }
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
if((MEDFileUMeshSplitL1 *)(*it))
(*it)->setCoords(coords);
}
for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
{
const DataArrayInt *ffield=getFamilyFieldAtLevel(*it);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ids=ffield->getDifferentValues();
+ MCAuto<DataArrayInt> ids=ffield->getDifferentValues();
std::set<int> res;
std::set_union(ids->begin(),ids->end(),allFamsIds.begin(),allFamsIds.end(),std::inserter(res,res.begin()));
allFamsIds=res;
_groups.erase(*it);
}
-void MEDFileUMesh::duplicateNodesOnM1Group(const std::string& grpNameM1, DataArrayInt *&nodesDuplicated, DataArrayInt *&cellsModified, DataArrayInt *&cellsNotModified)
+/**
+ * \b this must be filled at level 0 and -1, typically the -1 level being (part of) the descending connectivity
+ * of the top level. This method build a "crack", or an inner boundary, in \b this along the group of level -1 named grpNameM1.
+ * The boundary is built according to the following method:
+ * - all nodes along the boundary which are not lying on an internal extremity of the (-1)-level group are duplicated (so the
+ * coordinates array is extended).
+ * - new (-1)-level cells are built lying on those new nodes. So the edges/faces along the group are duplicated. A new group
+ * called "<grpNameM1>_dup" containing the effectively duplicated cells is created. Note that in 3D some cells of the group
+ * might not be duplicated at all.
+ * After this operation a top-level cell bordering the group will loose some neighbors (typically the cell which is on the
+ * other side of the group is no more a neighbor)
+ * - finally, the connectivity of (part of) the top level-cells bordering the group is also modified so that some cells
+ * bordering the newly created boundary use the newly computed nodes.
+ * Finally note that optional cell numbers are also affected by this method and might become invalid for SMESH.
+ * Use clearNodeAndCellNumbers() afterwards to ensure a proper SMESH loading.
+ *
+ * \param[in] grpNameM1 name of the (-1)-level group defining the boundary
+ * \param[out] nodesDuplicated ids of the initial nodes which have been duplicated (and whose copy is put at the end of
+ * the coord array)
+ * \param[out] cellsModified ids of the cells whose connectivity has been modified (to use the newly created nodes)
+ * \param[out] cellsNotModified ids of the rest of cells bordering the new boundary whose connectivity remains unchanged.
+ * \sa clearNodeAndCellNumbers()
+ */
+void MEDFileUMesh::buildInnerBoundaryAlongM1Group(const std::string& grpNameM1, DataArrayInt *&nodesDuplicated,
+ DataArrayInt *&cellsModified, DataArrayInt *&cellsNotModified)
{
+ typedef MCAuto<MEDCouplingUMesh> MUMesh;
+ typedef MCAuto<DataArrayInt> DAInt;
+
std::vector<int> levs=getNonEmptyLevels();
if(std::find(levs.begin(),levs.end(),0)==levs.end() || std::find(levs.begin(),levs.end(),-1)==levs.end())
- throw INTERP_KERNEL::Exception("MEDFileUMesh::duplicateNodesOnM1Group : This method works only for mesh definied on level 0 and -1 !");
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m0=getMeshAtLevel(0);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m1=getMeshAtLevel(-1);
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::buildInnerBoundaryAlongM1Group : This method works only for mesh definied on level 0 and -1 !");
+ MUMesh m0=getMeshAtLevel(0);
+ MUMesh m1=getMeshAtLevel(-1);
int nbNodes=m0->getNumberOfNodes();
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m11=getGroup(-1,grpNameM1);
+ MUMesh m11=getGroup(-1,grpNameM1);
DataArrayInt *tmp00=0,*tmp11=0,*tmp22=0;
m0->findNodesToDuplicate(*m11,tmp00,tmp11,tmp22);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> nodeIdsToDuplicate(tmp00);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellsToModifyConn0(tmp11);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellsToModifyConn1(tmp22);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp0=static_cast<MEDCouplingUMesh *>(m0->buildPartOfMySelf(cellsToModifyConn0->begin(),cellsToModifyConn0->end(),true));
+ DAInt nodeIdsToDuplicate(tmp00);
+ DAInt cellsToModifyConn0(tmp11);
+ DAInt cellsToModifyConn1(tmp22);
+ MUMesh tmp0=static_cast<MEDCouplingUMesh *>(m0->buildPartOfMySelf(cellsToModifyConn0->begin(),cellsToModifyConn0->end(),true));
// node renumbering of cells in m1 impacted by duplication of node but not in group 'grpNameM1' on level -1
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> descTmp0=DataArrayInt::New(),descITmp0=DataArrayInt::New(),revDescTmp0=DataArrayInt::New(),revDescITmp0=DataArrayInt::New();
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp0Desc=tmp0->buildDescendingConnectivity(descTmp0,descITmp0,revDescTmp0,revDescITmp0);
+ DAInt descTmp0=DataArrayInt::New(),descITmp0=DataArrayInt::New(),revDescTmp0=DataArrayInt::New(),revDescITmp0=DataArrayInt::New();
+ MUMesh tmp0Desc=tmp0->buildDescendingConnectivity(descTmp0,descITmp0,revDescTmp0,revDescITmp0);
descTmp0=0; descITmp0=0; revDescTmp0=0; revDescITmp0=0;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellsInM1ToRenumW2=tmp0Desc->getCellIdsLyingOnNodes(nodeIdsToDuplicate->begin(),nodeIdsToDuplicate->end(),false);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> cellsInM1ToRenumW3=static_cast<MEDCouplingUMesh *>(tmp0Desc->buildPartOfMySelf(cellsInM1ToRenumW2->begin(),cellsInM1ToRenumW2->end(),true));
+ DAInt cellsInM1ToRenumW2=tmp0Desc->getCellIdsLyingOnNodes(nodeIdsToDuplicate->begin(),nodeIdsToDuplicate->end(),false);
+ MUMesh cellsInM1ToRenumW3=static_cast<MEDCouplingUMesh *>(tmp0Desc->buildPartOfMySelf(cellsInM1ToRenumW2->begin(),cellsInM1ToRenumW2->end(),true));
DataArrayInt *cellsInM1ToRenumW4Tmp=0;
m1->areCellsIncludedIn(cellsInM1ToRenumW3,2,cellsInM1ToRenumW4Tmp);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellsInM1ToRenumW4(cellsInM1ToRenumW4Tmp);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellsInM1ToRenumW5=cellsInM1ToRenumW4->getIdsInRange(0,m1->getNumberOfCells());
+ DAInt cellsInM1ToRenumW4(cellsInM1ToRenumW4Tmp);
+ DAInt cellsInM1ToRenumW5=cellsInM1ToRenumW4->findIdsInRange(0,m1->getNumberOfCells());
cellsInM1ToRenumW5->transformWithIndArr(cellsInM1ToRenumW4->begin(),cellsInM1ToRenumW4->end());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> grpIds=getGroupArr(-1,grpNameM1);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellsInM1ToRenum=cellsInM1ToRenumW5->buildSubstraction(grpIds);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m1Part=static_cast<MEDCouplingUMesh *>(m1->buildPartOfMySelf(cellsInM1ToRenum->begin(),cellsInM1ToRenum->end(),true));
+ DAInt grpIds=getGroupArr(-1,grpNameM1);
+ DAInt cellsInM1ToRenum=cellsInM1ToRenumW5->buildSubstraction(grpIds);
+ MUMesh m1Part=static_cast<MEDCouplingUMesh *>(m1->buildPartOfMySelf(cellsInM1ToRenum->begin(),cellsInM1ToRenum->end(),true));
m1Part->duplicateNodesInConn(nodeIdsToDuplicate->begin(),nodeIdsToDuplicate->end(),nbNodes);
m1->setPartOfMySelf(cellsInM1ToRenum->begin(),cellsInM1ToRenum->end(),*m1Part);
// end of node renumbering of cells in m1 impacted by duplication of node but not in group of level -1 'grpNameM1'
tmp0->duplicateNodes(nodeIdsToDuplicate->begin(),nodeIdsToDuplicate->end());
m0->setCoords(tmp0->getCoords());
m0->setPartOfMySelf(cellsToModifyConn0->begin(),cellsToModifyConn0->end(),*tmp0);
+ _ms[0]->forceComputationOfParts(); // necessary because we modify the connectivity of some internal part
m1->setCoords(m0->getCoords());
_coords=m0->getCoords(); _coords->incrRef();
- // duplication of cells in group 'grpNameM1' on level -1
+ // duplication of cells in group 'grpNameM1' on level -1, but not duplicating cells for which nothing has changed
m11->duplicateNodesInConn(nodeIdsToDuplicate->begin(),nodeIdsToDuplicate->end(),nbNodes); m11->setCoords(m0->getCoords());
- std::vector<const MEDCouplingUMesh *> v(2); v[0]=m1; v[1]=m11;
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> newm1=MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords(v,tmp00,tmp11);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> szOfCellGrpOfSameType(tmp00);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> idInMsOfCellGrpOfSameType(tmp11);
+ DataArrayInt * duplCells;
+ m1->areCellsIncludedIn(m11, 0, duplCells);
+ DAInt zeIds = duplCells->findIdsNotInRange(-1, m1->getNumberOfCells()-1); duplCells->decrRef();
+ MUMesh m11Part=static_cast<MEDCouplingUMesh *>(m11->buildPartOfMySelf(zeIds->begin(),zeIds->end(),true));
+ std::vector<const MEDCouplingUMesh *> v(2); v[0]=m1; v[1]=m11Part;
+ MUMesh newm1=MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords(v,tmp00,tmp11);
+ DAInt szOfCellGrpOfSameType(tmp00);
+ DAInt idInMsOfCellGrpOfSameType(tmp11);
//
newm1->setName(getName());
const DataArrayInt *fam=getFamilyFieldAtLevel(-1);
if(!fam)
- throw INTERP_KERNEL::Exception("MEDFileUMesh::duplicateNodesOnM1Group : internal problem !");
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newFam=DataArrayInt::New();
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::buildInnerBoundaryAlongM1Group(): internal error no family field !");
+ DAInt newFam=DataArrayInt::New();
newFam->alloc(newm1->getNumberOfCells(),1);
- int idd=getMaxFamilyId()+1;
+ // Get a new family ID: care must be taken if we need a positive ID or a negative one:
+ // Positive ID for family of nodes, negative for all the rest.
+ int idd;
+ if (m1->getMeshDimension() == 0)
+ idd=getMaxFamilyId()+1;
+ else
+ idd=getMinFamilyId()-1;
int globStart=0,start=0,end,globEnd;
int nbOfChunks=szOfCellGrpOfSameType->getNumberOfTuples();
for(int i=0;i<nbOfChunks;i++)
if(idInMsOfCellGrpOfSameType->getIJ(i,0)==0)
{
end=start+szOfCellGrpOfSameType->getIJ(i,0);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> part=fam->selectByTupleId2(start,end,1);
+ DAInt part=fam->selectByTupleIdSafeSlice(start,end,1);
newFam->setPartOfValues1(part,globStart,globEnd,1,0,1,1,true);
start=end;
}
newFam->setPartOfValuesSimple1(0,nbNodes,newNbOfNodes,1,0,1,1);
_fam_coords=newFam;
}
+
+ _num_coords = 0;
+ _rev_num_coords = 0;
+ for (std::vector< MCAuto<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();
+ it != _ms.end(); it++)
+ {
+ (*it)->_num = 0;
+ (*it)->_rev_num = 0;
+ }
nodesDuplicated=nodeIdsToDuplicate.retn();
cellsModified=cellsToModifyConn0.retn();
cellsNotModified=cellsToModifyConn1.retn();
}
-/*!
+/*! Similar to MEDCouplingUMesh::unPolyze(): converts all polygons (if \a this is a 2D mesh) or polyhedrons
+ * (if \a this is a 3D mesh) to cells of classical types. The cells remain correctly sorted by geometric type
+ * in this method.
+ *
* \param [out] oldCode retrieves the distribution of types before the call if true is returned
* \param [out] newCode etrieves the distribution of types after the call if true is returned
* \param [out] o2nRenumCell tells for **all levels** the old 2 new renumbering of cells.
std::vector<int> levs=getNonEmptyLevels();
bool ret=false;
std::vector< const DataArrayInt* > renumCellsSplited;//same than memorySaverIfThrow
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > memorySaverIfThrow;//same than renumCellsSplited only in case of throw
+ std::vector< MCAuto<DataArrayInt> > memorySaverIfThrow;//same than renumCellsSplited only in case of throw
int start=0;
int end=0;
for(std::vector<int>::reverse_iterator it=levs.rbegin();it!=levs.rend();it++)
{
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m=getMeshAtLevel(*it);
+ MCAuto<MEDCouplingUMesh> m=getMeshAtLevel(*it);
std::vector<int> code1=m->getDistributionOfTypes();
end=PutInThirdComponentOfCodeOffset(code1,start);
oldCode.insert(oldCode.end(),code1.begin(),code1.end());
bool hasChanged=m->unPolyze();
DataArrayInt *fake=0;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2nCellsPart=m->getLevArrPerCellTypes(MEDCouplingUMesh::MEDMEM_ORDER,
+ MCAuto<DataArrayInt> o2nCellsPart=m->getLevArrPerCellTypes(MEDCouplingUMesh::MEDMEM_ORDER,
MEDCouplingUMesh::MEDMEM_ORDER+MEDCouplingUMesh::N_MEDMEM_ORDER,fake);
fake->decrRef();
renumCellsSplited.push_back(o2nCellsPart); memorySaverIfThrow.push_back(o2nCellsPart);
if(hasChanged)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2nCellsPart2=o2nCellsPart->buildPermArrPerLevel();
+ MCAuto<DataArrayInt> o2nCellsPart2=o2nCellsPart->buildPermArrPerLevel();
m->renumberCells(o2nCellsPart2->getConstPointer(),false);
ret=true;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> famField2,numField2;
+ MCAuto<DataArrayInt> famField2,numField2;
const DataArrayInt *famField=getFamilyFieldAtLevel(*it); if(famField) { famField->incrRef(); famField2=const_cast<DataArrayInt *>(famField); }
const DataArrayInt *numField=getNumberFieldAtLevel(*it); if(numField) { numField->incrRef(); numField2=const_cast<DataArrayInt *>(numField); }
setMeshAtLevel(*it,m);
end=PutInThirdComponentOfCodeOffset(code2,start);
newCode.insert(newCode.end(),code2.begin(),code2.end());
//
- if(o2nCellsPart2->isIdentity())
+ if(o2nCellsPart2->isIota(o2nCellsPart2->getNumberOfTuples()))
continue;
if(famField)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newFamField=famField->renumber(o2nCellsPart2->getConstPointer());
+ MCAuto<DataArrayInt> newFamField=famField->renumber(o2nCellsPart2->getConstPointer());
setFamilyFieldArr(*it,newFamField);
}
if(numField)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newNumField=numField->renumber(o2nCellsPart2->getConstPointer());
+ MCAuto<DataArrayInt> newNumField=numField->renumber(o2nCellsPart2->getConstPointer());
setRenumFieldArr(*it,newNumField);
}
}
}
if(ret)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> renumCells=DataArrayInt::Aggregate(renumCellsSplited);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2nRenumCellRet=renumCells->buildPermArrPerLevel();
+ MCAuto<DataArrayInt> renumCells=DataArrayInt::Aggregate(renumCellsSplited);
+ MCAuto<DataArrayInt> o2nRenumCellRet=renumCells->buildPermArrPerLevel();
o2nRenumCell=o2nRenumCellRet.retn();
}
return ret;
}
+/*! \cond HIDDEN_ITEMS */
struct MEDLoaderAccVisit1
{
MEDLoaderAccVisit1():_new_nb_of_nodes(0) { }
int operator()(bool val) { return val?_new_nb_of_nodes++:-1; }
int _new_nb_of_nodes;
};
+/*! \endcond */
/*!
* Array returned is the correspondance in \b old \b to \b new format. The returned array is newly created and should be dealt by the caller.
std::vector<int> neLevs(getNonEmptyLevels());
for(std::vector<int>::const_iterator lev=neLevs.begin();lev!=neLevs.end();lev++)
{
- const MEDFileUMeshSplitL1 *zeLev(getMeshAtLevSafe(*lev));
- if(zeLev->isMeshStoredSplitByType())
- {
- std::vector<MEDCoupling1GTUMesh *> ms(zeLev->getDirectUndergroundSingleGeoTypeMeshes());
- for(std::vector<MEDCoupling1GTUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
- if(*it)
- (*it)->computeNodeIdsAlg(nodeIdsInUse);
- }
- else
- {
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mesh(zeLev->getWholeMesh(false));
- mesh->computeNodeIdsAlg(nodeIdsInUse);
- }
+ const MEDFileUMeshSplitL1 *zeLev(getMeshAtLevSafe(*lev));
+ if(zeLev->isMeshStoredSplitByType())
+ {
+ std::vector<MEDCoupling1GTUMesh *> ms(zeLev->getDirectUndergroundSingleGeoTypeMeshes());
+ for(std::vector<MEDCoupling1GTUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
+ if(*it)
+ (*it)->computeNodeIdsAlg(nodeIdsInUse);
+ }
+ else
+ {
+ MCAuto<MEDCouplingUMesh> mesh(zeLev->getWholeMesh(false));
+ mesh->computeNodeIdsAlg(nodeIdsInUse);
+ }
+ }
+ int nbrOfNodesInUse((int)std::count(nodeIdsInUse.begin(),nodeIdsInUse.end(),true));
+ if(nbrOfNodesInUse==nbOfNodes)
+ return 0;//no need to update _part_coords
+ MCAuto<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(nbOfNodes,1);
+ std::transform(nodeIdsInUse.begin(),nodeIdsInUse.end(),ret->getPointer(),MEDLoaderAccVisit1());
+ MCAuto<DataArrayInt> ret2(ret->invertArrayO2N2N2OBis(nbrOfNodesInUse));
+ MCAuto<DataArrayDouble> newCoords(coo->selectByTupleIdSafe(ret2->begin(),ret2->end()));
+ MCAuto<DataArrayInt> newFamCoords;
+ MCAuto<DataArrayAsciiChar> newNameCoords;
+ if((const DataArrayInt *)_fam_coords)
+ newFamCoords=_fam_coords->selectByTupleIdSafe(ret2->begin(),ret2->end());
+ MCAuto<DataArrayInt> newNumCoords;
+ if((const DataArrayInt *)_num_coords)
+ newNumCoords=_num_coords->selectByTupleIdSafe(ret2->begin(),ret2->end());
+ if((const DataArrayAsciiChar *)_name_coords)
+ newNameCoords=static_cast<DataArrayAsciiChar *>(_name_coords->selectByTupleIdSafe(ret2->begin(),ret2->end()));
+ _coords=newCoords; _fam_coords=newFamCoords; _num_coords=newNumCoords; _name_coords=newNameCoords; _rev_num_coords=0;
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
+ {
+ if((MEDFileUMeshSplitL1*)*it)
+ {
+ (*it)->renumberNodesInConn(ret->begin());
+ (*it)->setCoords(_coords);
+ }
+ }
+ // updates _part_coords
+ const PartDefinition *pc(_part_coords);
+ if(pc)
+ {
+ MCAuto<PartDefinition> tmpPD(DataArrayPartDefinition::New(ret2));
+ _part_coords=tmpPD->composeWith(pc);
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method is a const method. It computes the minimal set of node ids covered by the cell extraction of \a this.
+ * The extraction of \a this is specified by the extractDef \a input map.
+ * This map tells for each level of cells, the cells kept in the extraction.
+ *
+ * \return - a new reference of DataArrayInt that represents sorted node ids, the extraction is lying on.
+ * \sa MEDFileField1TS::extractPart, MEDFileUMesh::extractPart
+ */
+DataArrayInt *MEDFileUMesh::deduceNodeSubPartFromCellSubPart(const std::map<int, MCAuto<DataArrayInt> >& extractDef) const
+{
+ std::vector<int> levs(getNonEmptyLevels());
+ std::vector<bool> fetchedNodes(getNumberOfNodes(),false);
+ for(std::map<int, MCAuto<DataArrayInt> >::const_iterator it=extractDef.begin();it!=extractDef.end();it++)
+ {
+ if((*it).first>1)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::deduceNodeSubPartFromCellSubPart : invalid key ! Must be <=1 !");
+ if((*it).second.isNull())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::deduceNodeSubPartFromCellSubPart : presence of a value with null pointer !");
+ if((*it).first==1)
+ continue;
+ if(std::find(levs.begin(),levs.end(),(*it).first)==levs.end())
+ {
+ std::ostringstream oss; oss << "MEDFileUMesh::deduceNodeSubPartFromCellSubPart : invalid level " << (*it).first << " ! Not present in this !";
+ throw INTERP_KERNEL::Exception(oss.str());
+ }
+ MCAuto<MEDCouplingUMesh> m(getMeshAtLevel((*it).first));
+ MCAuto<MEDCouplingUMesh> mPart(m->buildPartOfMySelf((*it).second->begin(),(*it).second->end(),true));
+ mPart->computeNodeIdsAlg(fetchedNodes);
+ }
+ return DataArrayInt::BuildListOfSwitchedOn(fetchedNodes);
+}
+
+/*!
+ * This method returns a new MEDFileUMesh that is the result of the extraction of cells/nodes in \a this.
+ *
+ * \return - a new reference of MEDFileUMesh
+ * \sa MEDFileUMesh::deduceNodeSubPartFromCellSubPart, MEDFileFields::extractPart
+ */
+MEDFileUMesh *MEDFileUMesh::extractPart(const std::map<int, MCAuto<DataArrayInt> >& extractDef) const
+{
+ MCAuto<MEDFileUMesh> ret(MEDFileUMesh::New()); ret->setName(getName()); ret->copyFamGrpMapsFrom(*this);
+ std::vector<int> levs(getNonEmptyLevels());
+ for(std::map<int, MCAuto<DataArrayInt> >::const_iterator it=extractDef.begin();it!=extractDef.end();it++)
+ {
+ if((*it).first>1)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::extractPart : invalid key ! Must be <=1 !");
+ if((*it).second.isNull())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::extractPart : presence of a value with null pointer !");
+ if((*it).first==1)
+ continue;
+ if(std::find(levs.begin(),levs.end(),(*it).first)==levs.end())
+ {
+ std::ostringstream oss; oss << "MEDFileUMesh::extractPart : invalid level " << (*it).first << " ! Not present in this !";
+ throw INTERP_KERNEL::Exception(oss.str());
+ }
+ MCAuto<MEDCouplingUMesh> m(getMeshAtLevel((*it).first));
+ MCAuto<MEDCouplingUMesh> mPart(m->buildPartOfMySelf((*it).second->begin(),(*it).second->end(),true));
+ ret->setMeshAtLevel((*it).first,mPart);
+ const DataArrayInt *fam(getFamilyFieldAtLevel((*it).first)),*num(getNumberFieldAtLevel((*it).first));
+ if(fam)
+ {
+ MCAuto<DataArrayInt> famPart(fam->selectByTupleIdSafe((*it).second->begin(),(*it).second->end()));
+ ret->setFamilyFieldArr((*it).first,famPart);
+ }
+ if(num)
+ {
+ MCAuto<DataArrayInt> numPart(num->selectByTupleIdSafe((*it).second->begin(),(*it).second->end()));
+ ret->setFamilyFieldArr((*it).first,numPart);
+ }
+ }
+ std::map<int, MCAuto<DataArrayInt> >::const_iterator it2(extractDef.find(1));
+ if(it2!=extractDef.end())
+ {
+ const DataArrayDouble *coo(ret->getCoords());
+ if(!coo)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::extractPart : trying to extract nodes whereas there is no nodes !");
+ MCAuto<DataArrayInt> o2nNodes(((*it2).second)->invertArrayN2O2O2N(coo->getNumberOfTuples()));
+ MCAuto<DataArrayDouble> cooPart(coo->selectByTupleIdSafe((*it2).second->begin(),(*it2).second->end()));
+ ret->setCoords(cooPart);
+ const DataArrayInt *fam(getFamilyFieldAtLevel(1)),*num(getNumberFieldAtLevel(1));
+ if(fam)
+ {
+ MCAuto<DataArrayInt> famPart(fam->selectByTupleIdSafe((*it2).second->begin(),(*it2).second->end()));
+ ret->setFamilyFieldArr(1,famPart);
+ }
+ if(num)
+ {
+ MCAuto<DataArrayInt> numPart(num->selectByTupleIdSafe((*it2).second->begin(),(*it2).second->end()));
+ ret->setFamilyFieldArr(1,numPart);
+ }
+ for(std::map<int, MCAuto<DataArrayInt> >::const_iterator it3=extractDef.begin();it3!=extractDef.end();it3++)
+ {
+ if((*it3).first==1)
+ continue;
+ MCAuto<MEDCouplingUMesh> m(ret->getMeshAtLevel((*it3).first));
+ m->renumberNodesInConn(o2nNodes->begin());
+ ret->setMeshAtLevel((*it3).first,m);
+ }
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method performs an extrusion along a path defined by \a m1D.
+ * \a this is expected to be a mesh with max mesh dimension equal to 2.
+ * \a m1D is expected to be a mesh with space dimesion equal to 3 and mesh dimension equal to 1.
+ * Mesh dimensions of returned mesh is incremented by one compared to thoose in \a this.
+ * This method scans all levels in \a this
+ * and put them in the returned mesh. All groups in \a this are also put in the returned mesh.
+ *
+ * \param [in] m1D - the mesh defining the extrusion path.
+ * \param [in] policy - defines the policy of extrusion (see MEDCouplingUMesh::buildExtrudedMesh for more details)
+ * \return - a new reference on mesh (you have to deal with using decrRef). The returned mesh will have the same name than \a this.
+ *
+ * \sa MEDCouplingUMesh::buildExtrudedMesh
+ */
+MEDFileUMesh *MEDFileUMesh::buildExtrudedMesh(const MEDCouplingUMesh *m1D, int policy) const
+{
+ checkCartesian();
+ if(getMeshDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::buildExtrudedMesh : this is expected to be with mesh dimension equal to 2 !");
+ MCAuto<MEDFileUMesh> ret(MEDFileUMesh::New());
+ m1D->checkConsistencyLight();
+ if(m1D->getMeshDimension()!=1)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::buildExtrudedMesh : input mesh must have a mesh dimension equal to one !");
+ int nbRep(m1D->getNumberOfCells());
+ std::vector<int> levs(getNonEmptyLevels());
+ std::vector<std::string> grps(getGroupsNames());
+ std::vector< MCAuto<MEDCouplingUMesh> > zeList;
+ DataArrayDouble *coords(0);
+ std::size_t nbOfLevsOut(levs.size()+1);
+ std::vector< MCAuto<DataArrayInt> > o2ns(nbOfLevsOut);
+ for(std::vector<int>::const_iterator lev=levs.begin();lev!=levs.end();lev++)
+ {
+ MCAuto<MEDCouplingUMesh> item(getMeshAtLevel(*lev));
+ item=item->clone(false);
+ item->changeSpaceDimension(3+(*lev),0.);//no problem non const but change DataArrayDouble for coordinates do not alter data
+ MCAuto<MEDCouplingUMesh> tmp(static_cast<MEDCouplingUMesh *>(m1D->deepCopy()));
+ tmp->changeSpaceDimension(3+(*lev),0.);
+ MCAuto<MEDCouplingUMesh> elt(item->buildExtrudedMesh(tmp,policy));
+ zeList.push_back(elt);
+ if(*lev==0)
+ coords=elt->getCoords();
+ }
+ if(!coords)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::buildExtrudedMesh : internal error !");
+ for(std::vector< MCAuto<MEDCouplingUMesh> >::iterator it=zeList.begin();it!=zeList.end();it++)
+ {
+ (*it)->setName(getName());
+ (*it)->setCoords(coords);
+ }
+ for(std::size_t ii=0;ii!=zeList.size();ii++)
+ {
+ int lev(levs[ii]);
+ MCAuto<MEDCouplingUMesh> elt(zeList[ii]);
+ if(lev<=-1)
+ {
+ MCAuto<MEDCouplingUMesh> elt1(getMeshAtLevel(lev+1));
+ MCAuto<MEDCouplingUMesh> elt2(elt1->clone(false));
+ MCAuto<DataArrayInt> tmp(elt2->getNodalConnectivity()->deepCopy());
+ elt2->setConnectivity(tmp,elt2->getNodalConnectivityIndex());
+ elt2->shiftNodeNumbersInConn(nbRep*elt1->getNumberOfNodes());
+ elt1->setCoords(elt->getCoords()); elt2->setCoords(elt->getCoords());
+ std::vector<const MEDCouplingUMesh *> elts(3);
+ elts[0]=elt; elts[1]=elt1; elts[2]=elt2;
+ elt=MEDCouplingUMesh::MergeUMeshesOnSameCoords(elts);
+ elt->setName(getName());
+ }
+ //
+ o2ns[ii]=elt->sortCellsInMEDFileFrmt();
+ ret->setMeshAtLevel(lev,elt);
+ }
+ MCAuto<MEDCouplingUMesh> endLev(getMeshAtLevel(levs.back())),endLev2;
+ endLev=endLev->clone(false); endLev->setCoords(coords);
+ MCAuto<DataArrayInt> tmp(endLev->getNodalConnectivity()->deepCopy());
+ endLev2=endLev->clone(false); endLev2->setConnectivity(tmp,endLev->getNodalConnectivityIndex());
+ endLev2->shiftNodeNumbersInConn(nbRep*getNumberOfNodes());
+ endLev=MEDCouplingUMesh::MergeUMeshesOnSameCoords(endLev,endLev2);
+ o2ns[levs.size()]=endLev->sortCellsInMEDFileFrmt();
+ endLev->setName(getName());
+ ret->setMeshAtLevel(levs.back()-1,endLev);
+ //
+ for(std::size_t ii=0;ii!=zeList.size();ii++)
+ {
+ int lev(levs[ii]);
+ std::vector< MCAuto<DataArrayInt> > outGrps;
+ std::vector< const DataArrayInt * > outGrps2;
+ if(lev<=-1)
+ {
+ for(std::vector<std::string>::const_iterator grp=grps.begin();grp!=grps.end();grp++)
+ {
+ MCAuto<DataArrayInt> grpArr(getGroupArr(lev+1,*grp));
+ if(!grpArr->empty())
+ {
+ MCAuto<DataArrayInt> grpArr1(grpArr->deepCopy()),grpArr2(grpArr->deepCopy());
+ int offset0(zeList[ii]->getNumberOfCells());
+ int offset1(offset0+getNumberOfCellsAtLevel(lev+1));
+ grpArr1->applyLin(1,offset0); grpArr2->applyLin(1,offset1);
+ std::ostringstream oss; oss << grpArr2->getName() << "_top";
+ grpArr2->setName(oss.str());
+ grpArr1->transformWithIndArr(o2ns[ii]->begin(),o2ns[ii]->end());
+ grpArr2->transformWithIndArr(o2ns[ii]->begin(),o2ns[ii]->end());
+ outGrps.push_back(grpArr1); outGrps.push_back(grpArr2);
+ outGrps2.push_back(grpArr1); outGrps2.push_back(grpArr2);
+ }
+ }
+ }
+ //
+ for(std::vector<std::string>::const_iterator grp=grps.begin();grp!=grps.end();grp++)
+ {
+ MCAuto<DataArrayInt> grpArr(getGroupArr(lev,*grp));
+ if(!grpArr->empty())
+ {
+ int nbCellsB4Extrusion(getNumberOfCellsAtLevel(lev));
+ std::vector< MCAuto<DataArrayInt> > grpArrs(nbRep);
+ std::vector< const DataArrayInt *> grpArrs2(nbRep);
+ for(int iii=0;iii<nbRep;iii++)
+ {
+ grpArrs[iii]=grpArr->deepCopy(); grpArrs[iii]->applyLin(1,iii*nbCellsB4Extrusion);
+ grpArrs2[iii]=grpArrs[iii];
+ }
+ MCAuto<DataArrayInt> grpArrExt(DataArrayInt::Aggregate(grpArrs2));
+ grpArrExt->transformWithIndArr(o2ns[ii]->begin(),o2ns[ii]->end());
+ std::ostringstream grpName; grpName << *grp << "_extruded";
+ grpArrExt->setName(grpName.str());
+ outGrps.push_back(grpArrExt);
+ outGrps2.push_back(grpArrExt);
+ }
+ }
+ ret->setGroupsAtLevel(lev,outGrps2);
+ }
+ std::vector< MCAuto<DataArrayInt> > outGrps;
+ std::vector< const DataArrayInt * > outGrps2;
+ for(std::vector<std::string>::const_iterator grp=grps.begin();grp!=grps.end();grp++)
+ {
+ MCAuto<DataArrayInt> grpArr1(getGroupArr(levs.back(),*grp));
+ if(grpArr1->empty())
+ continue;
+ MCAuto<DataArrayInt> grpArr2(grpArr1->deepCopy());
+ std::ostringstream grpName; grpName << *grp << "_top";
+ grpArr2->setName(grpName.str());
+ grpArr2->applyLin(1,getNumberOfCellsAtLevel(levs.back()));
+ outGrps.push_back(grpArr1); outGrps.push_back(grpArr2);
+ outGrps2.push_back(grpArr1); outGrps2.push_back(grpArr2);
+ }
+ ret->setGroupsAtLevel(levs.back()-1,outGrps2);
+ return ret.retn();
+}
+
+/*!
+ * This method converts all linear cells in \a this into quadratic cells (following the \a conversionType policy).
+ * All the cells converted are put in the returned instance. This method applies all the groups and families in \a this to returned instance.
+ * Groups on nodes and families on nodes are copied directly to the returned instance without transformation.
+ *
+ * \param [in] conversionType - conversionType specifies the type of conversion expected. Only 0 (default) and 1 are supported presently. 0 those that creates the 'most' simple
+ * corresponding quadratic cells. 1 is those creating the 'most' complex.
+ * \param [in] eps - detection threshold for coordinates.
+ * \return A new instance that is the result of the conversion. The caller has the ownership of this returned instance.
+ *
+ * \sa MEDCouplingUMesh::convertLinearCellsToQuadratic , quadraticToLinear
+ */
+MEDFileUMesh *MEDFileUMesh::linearToQuadratic(int conversionType, double eps) const
+{
+ checkCartesian();
+ MCAuto<MEDFileUMesh> ret(MEDFileUMesh::New());
+ int initialNbNodes(getNumberOfNodes());
+ MCAuto<MEDCouplingUMesh> m0Tmp(getMeshAtLevel(0));
+ MCAuto<MEDCouplingUMesh> m0(dynamic_cast<MEDCouplingUMesh *>(m0Tmp->deepCopy()));
+ {
+ MCAuto<DataArrayInt> notUsed(m0->convertLinearCellsToQuadratic(conversionType));
+ }
+ DataArrayDouble *zeCoords(m0->getCoords());
+ ret->setMeshAtLevel(0,m0);
+ std::vector<int> levs(getNonEmptyLevels());
+ const DataArrayInt *famField(getFamilyFieldAtLevel(0));
+ if(famField)
+ {
+ MCAuto<DataArrayInt> famFieldCpy(famField->deepCopy());
+ ret->setFamilyFieldArr(0,famFieldCpy);
+ }
+ famField=getFamilyFieldAtLevel(1);
+ if(famField)
+ {
+ MCAuto<DataArrayInt> fam(DataArrayInt::New()); fam->alloc(zeCoords->getNumberOfTuples(),1);
+ fam->fillWithZero();
+ fam->setPartOfValues1(famField,0,initialNbNodes,1,0,1,1);
+ ret->setFamilyFieldArr(1,fam);
+ }
+ ret->copyFamGrpMapsFrom(*this);
+ MCAuto<DataArrayDouble> partZeCoords(zeCoords->selectByTupleIdSafeSlice(initialNbNodes,zeCoords->getNumberOfTuples(),1));
+ for(std::vector<int>::const_iterator lev=levs.begin();lev!=levs.end();lev++)
+ {
+ if(*lev==0)
+ continue;
+ MCAuto<MEDCouplingUMesh> m1Tmp(getMeshAtLevel(*lev));
+ MCAuto<MEDCouplingUMesh> m1(dynamic_cast<MEDCouplingUMesh *>(m1Tmp->deepCopy()));
+ if(m1->getMeshDimension()!=0)
+ {
+ {
+ MCAuto<DataArrayInt> notUsed(m1->convertLinearCellsToQuadratic(conversionType));
+ }//kill unused notUsed var
+ MCAuto<DataArrayDouble> m1Coords(m1->getCoords()->selectByTupleIdSafeSlice(initialNbNodes,m1->getNumberOfNodes(),1));
+ DataArrayInt *b(0);
+ bool a(partZeCoords->areIncludedInMe(m1Coords,eps,b));
+ MCAuto<DataArrayInt> bSafe(b);
+ if(!a)
+ {
+ std::ostringstream oss; oss << "MEDFileUMesh::linearCellsToQuadratic : for level " << *lev << " problem to identify nodes generated !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ b->applyLin(1,initialNbNodes);
+ MCAuto<DataArrayInt> l0(DataArrayInt::New()); l0->alloc(initialNbNodes,1); l0->iota();
+ std::vector<const DataArrayInt *> v(2); v[0]=l0; v[1]=b;
+ MCAuto<DataArrayInt> renum(DataArrayInt::Aggregate(v));
+ m1->renumberNodesInConn(renum->begin());
+ }
+ m1->setCoords(zeCoords);
+ ret->setMeshAtLevel(*lev,m1);
+ famField=getFamilyFieldAtLevel(*lev);
+ if(famField)
+ {
+ MCAuto<DataArrayInt> famFieldCpy(famField->deepCopy());
+ ret->setFamilyFieldArr(*lev,famFieldCpy);
+ }
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method converts all quadratic cells in \a this into linear cells.
+ * All the cells converted are put in the returned instance. This method applies all the groups and families in \a this to returned instance.
+ * Groups on nodes and families on nodes are copied directly to the returned instance without transformation.
+ *
+ * \param [in] eps - detection threshold for coordinates.
+ * \return A new instance that is the result of the conversion. The caller has the ownership of this returned instance.
+ *
+ * \sa MEDCouplingUMesh::convertLinearCellsToQuadratic , linearToQuadratic
+ */
+MEDFileUMesh *MEDFileUMesh::quadraticToLinear(double eps) const
+{
+ checkCartesian();
+ MCAuto<MEDFileUMesh> ret(MEDFileUMesh::New());
+ MCAuto<MEDCouplingUMesh> m0Tmp(getMeshAtLevel(0));
+ MCAuto<MEDCouplingUMesh> m0(dynamic_cast<MEDCouplingUMesh *>(m0Tmp->deepCopy()));
+ m0->convertQuadraticCellsToLinear();
+ m0->zipCoords();
+ DataArrayDouble *zeCoords(m0->getCoords());
+ ret->setMeshAtLevel(0,m0);
+ std::vector<int> levs(getNonEmptyLevels());
+ const DataArrayInt *famField(getFamilyFieldAtLevel(0));
+ if(famField)
+ {
+ MCAuto<DataArrayInt> famFieldCpy(famField->deepCopy());
+ ret->setFamilyFieldArr(0,famFieldCpy);
+ }
+ famField=getFamilyFieldAtLevel(1);
+ if(famField)
+ {
+ MCAuto<DataArrayInt> fam(famField->selectByTupleIdSafeSlice(0,zeCoords->getNumberOfTuples(),1));
+ ret->setFamilyFieldArr(1,fam);
+ }
+ ret->copyFamGrpMapsFrom(*this);
+ for(std::vector<int>::const_iterator lev=levs.begin();lev!=levs.end();lev++)
+ {
+ if(*lev==0)
+ continue;
+ MCAuto<MEDCouplingUMesh> m1Tmp(getMeshAtLevel(*lev));
+ MCAuto<MEDCouplingUMesh> m1(dynamic_cast<MEDCouplingUMesh *>(m1Tmp->deepCopy()));
+ m1->convertQuadraticCellsToLinear();
+ m1->zipCoords();
+ DataArrayInt *b(0);
+ bool a(zeCoords->areIncludedInMe(m1->getCoords(),eps,b));
+ MCAuto<DataArrayInt> bSafe(b);
+ if(!a)
+ {
+ std::ostringstream oss; oss << "MEDFileUMesh::quadraticToLinear : for level " << *lev << " problem to identify nodes generated !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ m1->renumberNodesInConn(b->begin());
+ m1->setCoords(zeCoords);
+ ret->setMeshAtLevel(*lev,m1);
+ famField=getFamilyFieldAtLevel(*lev);
+ if(famField)
+ {
+ MCAuto<DataArrayInt> famFieldCpy(famField->deepCopy());
+ ret->setFamilyFieldArr(*lev,famFieldCpy);
+ }
+ }
+ return ret.retn();
+}
+
+/*!
+ * Computes the symmetry of \a this.
+ * \return a new object.
+ */
+MCAuto<MEDFileUMesh> MEDFileUMesh::symmetry3DPlane(const double point[3], const double normalVector[3]) const
+{
+ MCAuto<MEDFileUMesh> ret(deepCopy());
+ DataArrayDouble *myCoo(getCoords());
+ if(myCoo)
+ {
+ MCAuto<DataArrayDouble> newCoo(myCoo->symmetry3DPlane(point,normalVector));
+ ret->setCoordsForced(newCoo);
+ }
+ return ret;
+}
+
+MCAuto<MEDFileUMesh> MEDFileUMesh::Aggregate(const std::vector<const MEDFileUMesh *>& meshes)
+{
+ if(meshes.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::Aggregate : empty input vector !");
+ std::size_t sz(meshes.size()),i(0);
+ std::vector<const DataArrayDouble *> coos(sz);
+ std::vector<const DataArrayInt *> fam_coos(sz),num_coos(sz);
+ for(std::vector<const MEDFileUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++,i++)
+ {
+ if(!(*it))
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::Aggregate : presence of NULL pointer in input vector !");
+ coos[i]=(*it)->getCoords();
+ fam_coos[i]=(*it)->getFamilyFieldAtLevel(1);
+ num_coos[i]=(*it)->getNumberFieldAtLevel(1);
+ }
+ const MEDFileUMesh *ref(meshes[0]);
+ int spaceDim(ref->getSpaceDimension()),meshDim(ref->getMeshDimension());
+ std::vector<int> levs(ref->getNonEmptyLevels());
+ std::map<int, std::vector<const DataArrayInt *> > m_fam,m_renum;
+ std::map<int, std::vector< MCAuto< MEDCouplingUMesh > > > m_mesh2;
+ std::map<int, std::vector<const MEDCouplingUMesh *> > m_mesh;
+ std::map<std::string,int> map1;
+ std::map<std::string, std::vector<std::string> > map2;
+ for(std::vector<const MEDFileUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++,i++)
+ {
+ if((*it)->getSpaceDimension()!=spaceDim)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::Aggregate : space dimension must be homogeneous !");
+ if((*it)->getMeshDimension()!=meshDim)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::Aggregate : mesh dimension must be homogeneous !");
+ if((*it)->getNonEmptyLevels()!=levs)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::Aggregate : levels must be the same for elements in input vector !");
+ for(std::vector<int>::const_iterator it2=levs.begin();it2!=levs.end();it2++)
+ {
+ MCAuto<MEDCouplingUMesh> locMesh((*it)->getMeshAtLevel(*it2));
+ m_mesh[*it2].push_back(locMesh); m_mesh2[*it2].push_back(locMesh);
+ m_fam[*it2].push_back((*it)->getFamilyFieldAtLevel(*it2));
+ m_renum[*it2].push_back((*it)->getNumberFieldAtLevel(*it2));
+ }
+ const std::map<std::string,int>& locMap1((*it)->getFamilyInfo());
+ for(std::map<std::string,int>::const_iterator it3=locMap1.begin();it3!=locMap1.end();it3++)
+ map1[(*it3).first]=(*it3).second;
+ const std::map<std::string, std::vector<std::string> >& locMap2((*it)->getGroupInfo());
+ for(std::map<std::string, std::vector<std::string> >::const_iterator it4=locMap2.begin();it4!=locMap2.end();it4++)
+ map2[(*it4).first]=(*it4).second;
+ }
+ // Easy part : nodes
+ MCAuto<MEDFileUMesh> ret(MEDFileUMesh::New());
+ MCAuto<DataArrayDouble> coo(DataArrayDouble::Aggregate(coos));
+ ret->setCoords(coo);
+ if(std::find(fam_coos.begin(),fam_coos.end(),(const DataArrayInt *)0)==fam_coos.end())
+ {
+ MCAuto<DataArrayInt> fam_coo(DataArrayInt::Aggregate(fam_coos));
+ ret->setFamilyFieldArr(1,fam_coo);
+ }
+ if(std::find(num_coos.begin(),num_coos.end(),(const DataArrayInt *)0)==num_coos.end())
+ {
+ MCAuto<DataArrayInt> num_coo(DataArrayInt::Aggregate(num_coos));
+ ret->setRenumFieldArr(1,num_coo);
+ }
+ // cells
+ for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
+ {
+ std::map<int, std::vector<const MEDCouplingUMesh *> >::const_iterator it2(m_mesh.find(*it));
+ if(it2==m_mesh.end())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::Aggregate : internal error 1 !");
+ MCAuto<MEDCouplingUMesh> mesh(MEDCouplingUMesh::MergeUMeshes((*it2).second));
+ mesh->setCoords(coo); mesh->setName(ref->getName());
+ MCAuto<DataArrayInt> renum(mesh->sortCellsInMEDFileFrmt());
+ ret->setMeshAtLevel(*it,mesh);
+ std::map<int, std::vector<const DataArrayInt *> >::const_iterator it3(m_fam.find(*it)),it4(m_renum.find(*it));
+ if(it3!=m_fam.end())
+ {
+ const std::vector<const DataArrayInt *>& fams((*it3).second);
+ if(std::find(fams.begin(),fams.end(),(const DataArrayInt *)0)==fams.end())
+ {
+ MCAuto<DataArrayInt> famm(DataArrayInt::Aggregate(fams));
+ famm->renumberInPlace(renum->begin());
+ ret->setFamilyFieldArr(*it,famm);
+ }
+ }
+ if(it4!=m_renum.end())
+ {
+ const std::vector<const DataArrayInt *>& renums((*it4).second);
+ if(std::find(renums.begin(),renums.end(),(const DataArrayInt *)0)==renums.end())
+ {
+ MCAuto<DataArrayInt> renumm(DataArrayInt::Aggregate(renums));
+ renumm->renumberInPlace(renum->begin());
+ ret->setRenumFieldArr(*it,renumm);
+ }
+ }
+ }
+ //
+ ret->setFamilyInfo(map1);
+ ret->setGroupInfo(map2);
+ ret->setName(ref->getName());
+ return ret;
+}
+
+MEDCouplingMappedExtrudedMesh *MEDFileUMesh::convertToExtrudedMesh() const
+{
+ if(getMeshDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::convertToExtrudedMesh : works only for 3D mesh !");
+ MCAuto<MEDCouplingUMesh> m3D(getMeshAtLevel(0)),m2D(getMeshAtLevel(-1));
+ if(m3D.isNull() || m2D.isNull())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::convertToExtrudedMesh : this must be defined both at level 0 and level -1 !");
+ int zeId(getFamilyId(GetSpeStr4ExtMesh()));
+ MCAuto<MEDCouplingMappedExtrudedMesh> ret(MEDCouplingMappedExtrudedMesh::New(m3D,m2D,zeId));
+ return ret.retn();
+}
+
+void MEDFileUMesh::serialize(std::vector<double>& tinyDouble, std::vector<int>& tinyInt, std::vector<std::string>& tinyStr, std::vector< MCAuto<DataArrayInt> >& bigArraysI, MCAuto<DataArrayDouble>& bigArrayD)
+{
+ clearNonDiscrAttributes();
+ forceComputationOfParts();
+ tinyDouble.clear(); tinyInt.clear(); tinyStr.clear(); bigArraysI.clear(); bigArrayD=0;
+ std::vector<int> layer0;
+ layer0.push_back(getAxisType());//0 i
+ layer0.push_back(_order); //1 i
+ layer0.push_back(_iteration);//2 i
+ layer0.push_back(getSpaceDimension());//3 i
+ tinyDouble.push_back(_time);//0 d
+ tinyStr.push_back(_name);//0 s
+ tinyStr.push_back(_desc_name);//1 s
+ for(int i=0;i<getSpaceDimension();i++)
+ tinyStr.push_back(_coords->getInfoOnComponent(i));
+ layer0.push_back((int)_families.size());//4 i <- key info aa layer#0
+ for(std::map<std::string,int>::const_iterator it=_families.begin();it!=_families.end();it++)
+ {
+ tinyStr.push_back((*it).first);
+ layer0.push_back((*it).second);
+ }
+ layer0.push_back((int)_groups.size());//4+aa i <- key info bb layer#0
+ for(std::map<std::string, std::vector<std::string> >::const_iterator it0=_groups.begin();it0!=_groups.end();it0++)
+ {
+ layer0.push_back((int)(*it0).second.size());
+ tinyStr.push_back((*it0).first);
+ for(std::vector<std::string>::const_iterator it1=((*it0).second).begin();it1!=((*it0).second).end();it1++)
+ tinyStr.push_back(*it1);
+ }
+ // sizeof(layer0)==4+aa+1+bb layer#0
+ bigArrayD=_coords;// 0 bd
+ bigArraysI.push_back(_fam_coords);// 0 bi
+ bigArraysI.push_back(_num_coords);// 1 bi
+ const PartDefinition *pd(_part_coords);
+ if(!pd)
+ layer0.push_back(-1);
+ else
+ {
+ std::vector<int> tmp0;
+ pd->serialize(tmp0,bigArraysI);
+ tinyInt.push_back(tmp0.size());
+ tinyInt.insert(tinyInt.end(),tmp0.begin(),tmp0.end());
+ }
+ //
+ std::vector<int> layer1;
+ std::vector<int> levs(getNonEmptyLevels());
+ layer1.push_back((int)levs.size());// 0 i <- key
+ layer1.insert(layer1.end(),levs.begin(),levs.end());
+ for(std::vector<int>::const_iterator it=levs.begin();it!=levs.end();it++)
+ {
+ const MEDFileUMeshSplitL1 *lev(getMeshAtLevSafe(*it));
+ lev->serialize(layer1,bigArraysI);
+ }
+ // put layers all together.
+ tinyInt.push_back(layer0.size());
+ tinyInt.insert(tinyInt.end(),layer0.begin(),layer0.end());
+ tinyInt.push_back(layer1.size());
+ tinyInt.insert(tinyInt.end(),layer1.begin(),layer1.end());
+}
+
+void MEDFileUMesh::unserialize(std::vector<double>& tinyDouble, std::vector<int>& tinyInt, std::vector<std::string>& tinyStr,
+ std::vector< MCAuto<DataArrayInt> >& bigArraysI, MCAuto<DataArrayDouble>& bigArrayD)
+{
+ int sz0(tinyInt[0]);
+ std::vector<int> layer0(tinyInt.begin()+1,tinyInt.begin()+1+sz0);
+ int sz1(tinyInt[sz0+1]);
+ std::vector<int> layer1(tinyInt.begin()+2+sz0,tinyInt.begin()+2+sz0+sz1);
+ //
+ std::reverse(layer0.begin(),layer0.end());
+ std::reverse(layer1.begin(),layer1.end());
+ std::reverse(tinyDouble.begin(),tinyDouble.end());
+ std::reverse(tinyStr.begin(),tinyStr.end());
+ std::reverse(bigArraysI.begin(),bigArraysI.end());
+ //
+ setAxisType((MEDCouplingAxisType)layer0.back()); layer0.pop_back();
+ _order=layer0.back(); layer0.pop_back();
+ _iteration=layer0.back(); layer0.pop_back();
+ int spaceDim(layer0.back()); layer0.pop_back();
+ _time=tinyDouble.back(); tinyDouble.pop_back();
+ _name=tinyStr.back(); tinyStr.pop_back();
+ _desc_name=tinyStr.back(); tinyStr.pop_back();
+ _coords=bigArrayD; _coords->rearrange(spaceDim);
+ for(int i=0;i<spaceDim;i++)
+ {
+ _coords->setInfoOnComponent(i,tinyStr.back());
+ tinyStr.pop_back();
+ }
+ int nbOfFams(layer0.back()); layer0.pop_back();
+ _families.clear();
+ for(int i=0;i<nbOfFams;i++)
+ {
+ _families[tinyStr.back()]=layer0.back();
+ tinyStr.pop_back(); layer0.pop_back();
}
- int nbrOfNodesInUse((int)std::count(nodeIdsInUse.begin(),nodeIdsInUse.end(),true));
- if(nbrOfNodesInUse==nbOfNodes)
- return 0;//no need to update _part_coords
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(nbOfNodes,1);
- std::transform(nodeIdsInUse.begin(),nodeIdsInUse.end(),ret->getPointer(),MEDLoaderAccVisit1());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret2(ret->invertArrayO2N2N2OBis(nbrOfNodesInUse));
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> newCoords(coo->selectByTupleIdSafe(ret2->begin(),ret2->end()));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newFamCoords;
- MEDCouplingAutoRefCountObjectPtr<DataArrayAsciiChar> newNameCoords;
- if((const DataArrayInt *)_fam_coords)
- newFamCoords=_fam_coords->selectByTupleIdSafe(ret2->begin(),ret2->end());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newNumCoords;
- if((const DataArrayInt *)_num_coords)
- newNumCoords=_num_coords->selectByTupleIdSafe(ret2->begin(),ret2->end());
- if((const DataArrayAsciiChar *)_name_coords)
- newNameCoords=static_cast<DataArrayAsciiChar *>(_name_coords->selectByTupleIdSafe(ret2->begin(),ret2->end()));
- _coords=newCoords; _fam_coords=newFamCoords; _num_coords=newNumCoords; _name_coords=newNameCoords; _rev_num_coords=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
+ int nbGroups(layer0.back()); layer0.pop_back();
+ _groups.clear();
+ for(int i=0;i<nbGroups;i++)
{
- if((MEDFileUMeshSplitL1*)*it)
+ std::string grpName(tinyStr.back()); tinyStr.pop_back();
+ int nbOfFamsOnGrp(layer0.back()); layer0.pop_back();
+ std::vector<std::string> fams(nbOfFamsOnGrp);
+ for(int j=0;j<nbOfFamsOnGrp;j++)
{
- (*it)->renumberNodesInConn(ret->begin());
- (*it)->setCoords(_coords);
+ fams[j]=tinyStr.back(); tinyStr.pop_back();
}
+ _groups[grpName]=fams;
}
- // updates _part_coords
- const PartDefinition *pc(_part_coords);
- if(pc)
+ _fam_coords=bigArraysI.back(); bigArraysI.pop_back();
+ _num_coords=bigArraysI.back(); bigArraysI.pop_back();
+ _part_coords=0;
+ int isPd(layer0.back()); layer0.pop_back();
+ if(isPd!=-1)
{
- MEDCouplingAutoRefCountObjectPtr<PartDefinition> tmpPD(DataArrayPartDefinition::New(ret2));
- _part_coords=tmpPD->composeWith(pc);
+ std::vector<int> tmp0(layer0.begin(),layer0.begin()+isPd);
+ layer0.erase(layer0.begin(),layer0.begin()+isPd);
+ _part_coords=PartDefinition::Unserialize(tmp0,bigArraysI);
+ }
+ if(!layer0.empty())
+ throw INTERP_KERNEL::Exception("MEDFileUMesh::unserialize : something wrong during unserialization #1 !");
+ //
+ int nbLevs(layer1.back()); layer1.pop_back();
+ std::vector<int> levs(layer1.rbegin(),layer1.rbegin()+nbLevs); layer1.erase(layer1.end()-nbLevs,layer1.end());
+ _ms.clear();
+ int maxLev(-(*std::min_element(levs.begin(),levs.end())));
+ _ms.resize(maxLev+1);
+ for(int i=0;i<nbLevs;i++)
+ {
+ int lev(levs[i]);
+ int pos(-lev);
+ _ms[pos]=MEDFileUMeshSplitL1::Unserialize(_name,_coords,layer1,bigArraysI);
}
- return ret.retn();
}
/*!
* Adds a group of nodes to \a this mesh.
* \param [in] ids - a DataArrayInt providing ids and a name of the group to add.
* The ids should be sorted and different each other (MED file norm).
+ *
+ * \warning this method can alter default "FAMILLE_ZERO" family.
+ * For users sensitive to this a call to MEDFileMesh::rearrangeFamilies will be necessary after addGroup session.
+ *
* \throw If the node coordinates array is not set.
* \throw If \a ids == \c NULL.
* \throw If \a ids->getName() == "".
*/
void MEDFileUMesh::addNodeGroup(const DataArrayInt *ids)
{
- const DataArrayDouble *coords=_coords;
+ const DataArrayDouble *coords(_coords);
if(!coords)
throw INTERP_KERNEL::Exception("MEDFileUMesh::addNodeGroup : no coords set !");
- int nbOfNodes=coords->getNumberOfTuples();
+ int nbOfNodes(coords->getNumberOfTuples());
if(!((DataArrayInt *)_fam_coords))
{ _fam_coords=DataArrayInt::New(); _fam_coords->alloc(nbOfNodes,1); _fam_coords->fillWithZero(); }
//
/*!
* Adds a group of nodes/cells/faces/edges to \a this mesh.
+ *
* \param [in] ids - a DataArrayInt providing ids and a name of the group to add.
* The ids should be sorted and different each other (MED file norm).
+ *
+ * \warning this method can alter default "FAMILLE_ZERO" family.
+ * For users sensitive to this a call to MEDFileMesh::rearrangeFamilies will be necessary after addGroup session.
+ *
* \throw If the node coordinates array is not set.
* \throw If \a ids == \c NULL.
* \throw If \a ids->getName() == "".
*/
void MEDFileUMesh::addGroup(int meshDimRelToMaxExt, const DataArrayInt *ids)
{
- std::vector<int> levs=getNonEmptyLevelsExt();
+ std::vector<int> levs(getNonEmptyLevelsExt());
if(std::find(levs.begin(),levs.end(),meshDimRelToMaxExt)==levs.end())
{
std::ostringstream oss; oss << "MEDFileUMesh::addGroup : level " << meshDimRelToMaxExt << " not available ! Should be in ";
}
if(meshDimRelToMaxExt==1)
{ addNodeGroup(ids); return ; }
- MEDFileUMeshSplitL1 *lev=getMeshAtLevSafe(meshDimRelToMaxExt);
- DataArrayInt *fam=lev->getOrCreateAndGetFamilyField();
+ MEDFileUMeshSplitL1 *lev(getMeshAtLevSafe(meshDimRelToMaxExt));
+ DataArrayInt *fam(lev->getOrCreateAndGetFamilyField());
addGroupUnderground(false,ids,fam);
}
-/*!
- * \param [in] ids ids and group name of the new group to add. The ids should be sorted and different each other (MED file norm).
- * \parma [in,out] famArr family array on level of interest to be renumbered. The input pointer should be not \c NULL (no check of that will be performed)
- */
-void MEDFileUMesh::addGroupUnderground(bool isNodeGroup, const DataArrayInt *ids, DataArrayInt *famArr)
-{
- if(!ids)
- throw INTERP_KERNEL::Exception("MEDFileUMesh::addGroup : NULL pointer in input !");
- std::string grpName(ids->getName());
- if(grpName.empty())
- throw INTERP_KERNEL::Exception("MEDFileUMesh::addGroup : empty group name ! MED file format do not accept empty group name !");
- ids->checkStrictlyMonotonic(true);
- famArr->incrRef(); MEDCouplingAutoRefCountObjectPtr<DataArrayInt> famArrTmp(famArr);
- std::vector<std::string> grpsNames=getGroupsNames();
- if(std::find(grpsNames.begin(),grpsNames.end(),grpName)!=grpsNames.end())
- {
- std::ostringstream oss; oss << "MEDFileUMesh::addGroup : Group with name \"" << grpName << "\" already exists ! Destroy it before calling this method !";
- throw INTERP_KERNEL::Exception(oss.str().c_str());
- }
- std::list< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > allFamIds=getAllNonNullFamilyIds();
- allFamIds.erase(std::find(allFamIds.begin(),allFamIds.end(),famArrTmp));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> famIds=famArr->selectByTupleIdSafe(ids->begin(),ids->end());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> diffFamIds=famIds->getDifferentValues();
- std::vector<int> familyIds;
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > idsPerfamiliyIds;
- int maxVal=getTheMaxAbsFamilyId()+1;
- std::map<std::string,int> families(_families);
- std::map<std::string, std::vector<std::string> > groups(_groups);
- std::vector<std::string> fams;
- bool created(false);
- for(const int *famId=diffFamIds->begin();famId!=diffFamIds->end();famId++)
- {
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ids2Tmp=famIds->getIdsEqual(*famId);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ids2=ids->selectByTupleId(ids2Tmp->begin(),ids2Tmp->end());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ids1=famArr->getIdsEqual(*famId);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret0(ids1->buildSubstractionOptimized(ids2));
- if(ret0->empty())
- {
- bool isFamPresent=false;
- for(std::list< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >::const_iterator itl=allFamIds.begin();itl!=allFamIds.end() && !isFamPresent;itl++)
- isFamPresent=(*itl)->presenceOfValue(*famId);
- if(!isFamPresent)
- { familyIds.push_back(*famId); idsPerfamiliyIds.push_back(ret0); fams.push_back(FindOrCreateAndGiveFamilyWithId(families,*famId,created)); } // adding *famId in grp
- else
- {
- familyIds.push_back(isNodeGroup?maxVal:-maxVal); idsPerfamiliyIds.push_back(ids2);
- std::string locFamName=FindOrCreateAndGiveFamilyWithId(families,isNodeGroup?maxVal:-maxVal,created);
- fams.push_back(locFamName);
- if(existsFamily(*famId))
- {
- std::string locFamName2=getFamilyNameGivenId(*famId); std::vector<std::string> v(2); v[0]=locFamName2; v[1]=locFamName;
- ChangeAllGroupsContainingFamily(groups,getFamilyNameGivenId(*famId),v);
- }
- maxVal++;
- } // modifying all other groups on *famId to lie on maxVal and lie the grp on maxVal
- }
- else
- {
- familyIds.push_back(isNodeGroup?maxVal:-maxVal); idsPerfamiliyIds.push_back(ret0); // modifying all other groups on *famId to lie on maxVal and on maxVal+1
- familyIds.push_back(isNodeGroup?maxVal+1:-maxVal-1); idsPerfamiliyIds.push_back(ids2);//grp lie only on maxVal+1
- std::string n2(FindOrCreateAndGiveFamilyWithId(families,isNodeGroup?maxVal+1:-maxVal-1,created)); fams.push_back(n2);
- if(existsFamily(*famId))
- {
- std::string n1(FindOrCreateAndGiveFamilyWithId(families,isNodeGroup?maxVal:-maxVal,created)); std::vector<std::string> v(2); v[0]=n1; v[1]=n2;
- ChangeAllGroupsContainingFamily(groups,getFamilyNameGivenId(*famId),v);
- }
- maxVal+=2;
- }
- }
- for(std::size_t i=0;i<familyIds.size();i++)
- {
- DataArrayInt *da=idsPerfamiliyIds[i];
- famArr->setPartOfValuesSimple3(familyIds[i],da->begin(),da->end(),0,1,1);
- }
- _families=families;
- _groups=groups;
- _groups[grpName]=fams;
-}
-
/*!
* Changes a name of a family specified by its id.
* \param [in] id - the id of the family of interest.
*/
void MEDFileUMesh::setMeshAtLevel(int meshDimRelToMax, MEDCoupling1GTUMesh *m)
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> elt(new MEDFileUMeshSplitL1(m));
+ MCAuto<MEDFileUMeshSplitL1> elt(new MEDFileUMeshSplitL1(m));
checkAndGiveEntryInSplitL1(meshDimRelToMax,m)=elt;
}
*/
void MEDFileUMesh::setMeshAtLevel(int meshDimRelToMax, MEDCouplingUMesh *m, bool newOrOld)
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> elt(new MEDFileUMeshSplitL1(m,newOrOld));
+ MCAuto<MEDFileUMeshSplitL1> elt(new MEDFileUMeshSplitL1(m,newOrOld));
checkAndGiveEntryInSplitL1(meshDimRelToMax,m)=elt;
}
-MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1>& MEDFileUMesh::checkAndGiveEntryInSplitL1(int meshDimRelToMax, MEDCouplingPointSet *m)
+MCAuto<MEDFileUMeshSplitL1>& MEDFileUMesh::checkAndGiveEntryInSplitL1(int meshDimRelToMax, MEDCouplingPointSet *m)
{
dealWithTinyInfo(m);
std::vector<int> levSet=getNonEmptyLevels();
* \throw If the meshes in \a ms do not share the same node coordinates array.
* \throw If the node coordinates array of \a this mesh (if any) is not the same as that
* of the given meshes.
- * \throw If \a ms[ i ] is not well defined (MEDCouplingUMesh::checkCoherency()).
+ * \throw If \a ms[ i ] is not well defined (MEDCouplingUMesh::checkConsistencyLight()).
* \throw If names of some meshes in \a ms are equal.
* \throw If \a ms includes a mesh with an empty name.
*/
if((DataArrayDouble *)_coords!=coo)
throw INTERP_KERNEL::Exception("MEDFileUMesh::setGroupsFromScratch : coordinates mismatches !");
std::vector<DataArrayInt *> corr;
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,_zipconn_pol,corr);
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > corr3(corr.begin(),corr.end());
+ MCAuto<MEDCouplingUMesh> m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,_zipconn_pol,corr);
+ std::vector< MCAuto<DataArrayInt> > corr3(corr.begin(),corr.end());
setMeshAtLevel(meshDimRelToMax,m,renum);
std::vector<const DataArrayInt *> corr2(corr.begin(),corr.end());
setGroupsAtLevel(meshDimRelToMax,corr2,true);
* \throw If the meshes in \a ms do not share the same node coordinates array.
* \throw If the node coordinates array of \a this mesh (if any) is not the same as that
* of the given meshes.
- * \throw If \a ms[ i ] is not well defined (MEDCouplingUMesh::checkCoherency()).
+ * \throw If \a ms[ i ] is not well defined (MEDCouplingUMesh::checkConsistencyLight()).
* \throw If names of some meshes in \a ms are equal.
* \throw If \a ms includes a mesh with an empty name.
*/
if((DataArrayDouble *)_coords!=coo)
throw INTERP_KERNEL::Exception("MEDFileUMesh::setGroupsOnSetMesh : coordinates mismatches !");
MEDCouplingUMesh *m=getMeshAtLevel(meshDimRelToMax,renum);
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > corr(ms.size());
+ std::vector< MCAuto<DataArrayInt> > corr(ms.size());
int i=0;
for(std::vector<const MEDCouplingUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++,i++)
{
int mdim=ms[0]->getMeshDimension();
for(unsigned int i=1;i<ms.size();i++)
{
- ms[i]->checkCoherency();
+ ms[i]->checkConsistencyLight();
if(ms[i]->getCoords()!=ret)
throw INTERP_KERNEL::Exception("MEDFileUMesh::checkMultiMesh : meshes must share the same coords !");
if(ms[i]->getMeshDimension()!=mdim)
throw INTERP_KERNEL::Exception("MEDFileUMesh::setFamilyFieldArr : Dimension request is invalid (>1) !");
int traducedRk=-meshDimRelToMaxExt;
if(traducedRk>=(int)_ms.size())
- throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !");
+ throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !");
if((MEDFileUMeshSplitL1 *)_ms[traducedRk]==0)
throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !");
return _ms[traducedRk]->setFamilyArr(famArr);
throw INTERP_KERNEL::Exception("MEDFileUMesh::setRenumArr : Dimension request is invalid (>1) !");
int traducedRk=-meshDimRelToMaxExt;
if(traducedRk>=(int)_ms.size())
- throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !");
+ throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !");
if((MEDFileUMeshSplitL1 *)_ms[traducedRk]==0)
throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !");
return _ms[traducedRk]->setRenumArr(renumArr);
throw INTERP_KERNEL::Exception("MEDFileUMesh::setNameFieldAtLevel : Dimension request is invalid (>1) !");
int traducedRk=-meshDimRelToMaxExt;
if(traducedRk>=(int)_ms.size())
- throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! To low !");
+ throw INTERP_KERNEL::Exception("Invalid mesh dim relative to max given ! Too low !");
if((MEDFileUMeshSplitL1 *)_ms[traducedRk]==0)
throw INTERP_KERNEL::Exception("On specified lev (or entity) no cells exists !");
return _ms[traducedRk]->setNameArr(nameArr);
void MEDFileUMesh::synchronizeTinyInfoOnLeaves() const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
if((const MEDFileUMeshSplitL1 *)(*it))
(*it)->synchronizeTinyInfo(*this);
}
DataArrayInt *arr=_fam_coords;
if(arr)
arr->changeValue(oldId,newId);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::iterator it=_ms.begin();it!=_ms.end();it++)
{
MEDFileUMeshSplitL1 *sp=(*it);
if(sp)
}
}
-std::list< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > MEDFileUMesh::getAllNonNullFamilyIds() const
+std::list< MCAuto<DataArrayInt> > MEDFileUMesh::getAllNonNullFamilyIds() const
{
- std::list< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > ret;
+ std::list< MCAuto<DataArrayInt> > ret;
const DataArrayInt *da(_fam_coords);
if(da)
- { da->incrRef(); ret.push_back(MEDCouplingAutoRefCountObjectPtr<DataArrayInt>(const_cast<DataArrayInt *>(da))); }
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
+ { da->incrRef(); ret.push_back(MCAuto<DataArrayInt>(const_cast<DataArrayInt *>(da))); }
+ for(std::vector< MCAuto<MEDFileUMeshSplitL1> >::const_iterator it=_ms.begin();it!=_ms.end();it++)
{
const MEDFileUMeshSplitL1 *elt(*it);
if(elt)
{
da=elt->getFamilyField();
if(da)
- { da->incrRef(); ret.push_back(MEDCouplingAutoRefCountObjectPtr<DataArrayInt>(const_cast<DataArrayInt *>(da))); }
+ { da->incrRef(); ret.push_back(MCAuto<DataArrayInt>(const_cast<DataArrayInt *>(da))); }
}
}
return ret;
{
if((const DataArrayInt *)_fam_nodes)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da;
+ MCAuto<DataArrayInt> da;
if(!famIds.empty())
- da=_fam_nodes->getIdsEqualList(&famIds[0],&famIds[0]+famIds.size());
+ da=_fam_nodes->findIdsEqualList(&famIds[0],&famIds[0]+famIds.size());
else
- da=_fam_nodes->getIdsEqualList(0,0);
+ da=_fam_nodes->findIdsEqualList(0,0);
if(renum)
return MEDFileUMeshSplitL1::Renumber(_num_nodes,da);
else
{
if((const DataArrayInt *)_fam_cells)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da;
+ MCAuto<DataArrayInt> da;
if(!famIds.empty())
- da=_fam_cells->getIdsEqualList(&famIds[0],&famIds[0]+famIds.size());
+ da=_fam_cells->findIdsEqualList(&famIds[0],&famIds[0]+famIds.size());
else
- da=_fam_cells->getIdsEqualList(0,0);
+ da=_fam_cells->findIdsEqualList(0,0);
if(renum)
return MEDFileUMeshSplitL1::Renumber(_num_cells,da);
else
{
if((const DataArrayInt *)_fam_faces)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da;
+ MCAuto<DataArrayInt> da;
if(!famIds.empty())
- da=_fam_faces->getIdsEqualList(&famIds[0],&famIds[0]+famIds.size());
+ da=_fam_faces->findIdsEqualList(&famIds[0],&famIds[0]+famIds.size());
else
- da=_fam_faces->getIdsEqualList(0,0);
+ da=_fam_faces->findIdsEqualList(0,0);
if(renum)
return MEDFileUMeshSplitL1::Renumber(_num_faces,da);
else
{
case 0:
{
- int nbCells=mesh->getNumberOfCells();
- famArr->checkNbOfTuplesAndComp(nbCells,1,"MEDFileStructuredMesh::setFamilyFieldArr : Problem in size of Family arr ! Mismatch with number of cells of mesh !");
+ int nbCells(mesh->getNumberOfCells());
+ if(famArr)
+ famArr->checkNbOfTuplesAndComp(nbCells,1,"MEDFileStructuredMesh::setFamilyFieldArr : Problem in size of Family arr ! Mismatch with number of cells of mesh !");
_fam_cells=famArr;
break;
}
case 1:
{
- int nbNodes=mesh->getNumberOfNodes();
- famArr->checkNbOfTuplesAndComp(nbNodes,1,"MEDFileStructuredMesh::setFamilyFieldArr : Problem in size of Family arr ! Mismatch with number of nodes of mesh !");
+ int nbNodes(mesh->getNumberOfNodes());
+ if(famArr)
+ famArr->checkNbOfTuplesAndComp(nbNodes,1,"MEDFileStructuredMesh::setFamilyFieldArr : Problem in size of Family arr ! Mismatch with number of nodes of mesh !");
_fam_nodes=famArr;
break;
}
case -1:
{
- int nbCells=mesh->getNumberOfCellsOfSubLevelMesh();
- famArr->checkNbOfTuplesAndComp(nbCells,1,"MEDFileStructuredMesh::setFamilyFieldArr : Problem in size of Family arr ! Mismatch with number of faces of mesh !");
+ int nbCells(mesh->getNumberOfCellsOfSubLevelMesh());
+ if(famArr)
+ famArr->checkNbOfTuplesAndComp(nbCells,1,"MEDFileStructuredMesh::setFamilyFieldArr : Problem in size of Family arr ! Mismatch with number of faces of mesh !");
_fam_faces=famArr;
break;
}
nameArr->incrRef();
}
+/*!
+ * Adds a group of nodes to \a this mesh.
+ * \param [in] ids - a DataArrayInt providing ids and a name of the group to add.
+ * The ids should be sorted and different each other (MED file norm).
+ *
+ * \warning this method can alter default "FAMILLE_ZERO" family.
+ * For users sensitive to this a call to MEDFileMesh::rearrangeFamilies will be necessary after addGroup session.
+ *
+ * \throw If the node coordinates array is not set.
+ * \throw If \a ids == \c NULL.
+ * \throw If \a ids->getName() == "".
+ * \throw If \a ids does not respect the MED file norm.
+ * \throw If a group with name \a ids->getName() already exists.
+ */
+void MEDFileStructuredMesh::addNodeGroup(const DataArrayInt *ids)
+{
+ addGroup(1,ids);
+}
+
+/*!
+ * Adds a group of nodes/cells/faces/edges to \a this mesh.
+ *
+ * \param [in] ids - a DataArrayInt providing ids and a name of the group to add.
+ * The ids should be sorted and different each other (MED file norm).
+ *
+ * \warning this method can alter default "FAMILLE_ZERO" family.
+ * For users sensitive to this a call to MEDFileMesh::rearrangeFamilies will be necessary after addGroup session.
+ *
+ * \throw If the node coordinates array is not set.
+ * \throw If \a ids == \c NULL.
+ * \throw If \a ids->getName() == "".
+ * \throw If \a ids does not respect the MED file norm.
+ * \throw If a group with name \a ids->getName() already exists.
+ */
+void MEDFileStructuredMesh::addGroup(int meshDimRelToMaxExt, const DataArrayInt *ids)
+{
+ DataArrayInt *fam(getOrCreateAndGetFamilyFieldAtLevel(meshDimRelToMaxExt));
+ addGroupUnderground(false,ids,fam);
+ return ;
+}
+
/*!
* Returns the family field for mesh entities of a given dimension.
* \param [in] meshDimRelToMaxExt - the relative dimension of mesh entities.
}
}
+/*!
+ * Returns the family field for mesh entities of a given dimension.
+ * \param [in] meshDimRelToMaxExt - the relative dimension of mesh entities.
+ * \return const DataArrayInt * - the family field. It is an array of ids of families
+ * each mesh entity belongs to. It can be \c NULL.
+ * \throw If \a meshDimRelToMaxExt != 0 and \a meshDimRelToMaxExt != 1.
+ */
+DataArrayInt *MEDFileStructuredMesh::getFamilyFieldAtLevel(int meshDimRelToMaxExt)
+{
+ switch(meshDimRelToMaxExt)
+ {
+ case 0:
+ return _fam_cells;
+ case 1:
+ return _fam_nodes;
+ case -1:
+ return _fam_faces;
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileStructuredMesh::getFamilyFieldAtLevel : Only available for levels 0 or 1 or -1 !");
+ }
+}
+
/*!
* Returns the optional numbers of mesh entities of a given dimension.
* \param [in] meshDimRelToMaxExt - the relative dimension of mesh entities.
arr->changeValue(oldId,newId);
}
+std::list< MCAuto<DataArrayInt> > MEDFileStructuredMesh::getAllNonNullFamilyIds() const
+{
+ std::list< MCAuto<DataArrayInt> > ret;
+ const DataArrayInt *da(_fam_nodes);
+ if(da)
+ { da->incrRef(); ret.push_back(MCAuto<DataArrayInt>(const_cast<DataArrayInt *>(da))); }
+ da=_fam_cells;
+ if(da)
+ { da->incrRef(); ret.push_back(MCAuto<DataArrayInt>(const_cast<DataArrayInt *>(da))); }
+ da=_fam_faces;
+ if(da)
+ { da->incrRef(); ret.push_back(MCAuto<DataArrayInt>(const_cast<DataArrayInt *>(da))); }
+ return ret;
+}
+
void MEDFileStructuredMesh::deepCpyAttributes()
{
if((const DataArrayInt*)_fam_nodes)
- _fam_nodes=_fam_nodes->deepCpy();
+ _fam_nodes=_fam_nodes->deepCopy();
if((const DataArrayInt*)_num_nodes)
- _num_nodes=_num_nodes->deepCpy();
+ _num_nodes=_num_nodes->deepCopy();
if((const DataArrayAsciiChar*)_names_nodes)
- _names_nodes=_names_nodes->deepCpy();
+ _names_nodes=_names_nodes->deepCopy();
if((const DataArrayInt*)_fam_cells)
- _fam_cells=_fam_cells->deepCpy();
+ _fam_cells=_fam_cells->deepCopy();
if((const DataArrayInt*)_num_cells)
- _num_cells=_num_cells->deepCpy();
+ _num_cells=_num_cells->deepCopy();
if((const DataArrayAsciiChar*)_names_cells)
- _names_cells=_names_cells->deepCpy();
+ _names_cells=_names_cells->deepCopy();
if((const DataArrayInt*)_fam_faces)
- _fam_faces=_fam_faces->deepCpy();
+ _fam_faces=_fam_faces->deepCopy();
if((const DataArrayInt*)_num_faces)
- _num_faces=_num_faces->deepCpy();
+ _num_faces=_num_faces->deepCopy();
if((const DataArrayAsciiChar*)_names_faces)
- _names_faces=_names_faces->deepCpy();
+ _names_faces=_names_faces->deepCopy();
if((const DataArrayInt*)_rev_num_nodes)
- _rev_num_nodes=_rev_num_nodes->deepCpy();
+ _rev_num_nodes=_rev_num_nodes->deepCopy();
if((const DataArrayInt*)_rev_num_cells)
- _rev_num_cells=_rev_num_cells->deepCpy();
+ _rev_num_cells=_rev_num_cells->deepCopy();
}
/*!
* \return MEDCouplingMesh * - a pointer to MEDCouplingMesh that the caller is to
* delete using decrRef() as it is no more needed.
*/
-MEDCouplingMesh *MEDFileStructuredMesh::getGenMeshAtLevel(int meshDimRelToMax, bool renum) const
+MEDCouplingMesh *MEDFileStructuredMesh::getMeshAtLevel(int meshDimRelToMax, bool renum) const
{
+ checkCartesian();
if(renum)
throw INTERP_KERNEL::Exception("MEDFileCurveLinearMesh does not support renumbering ! To do it perform request of renum array directly !");
const MEDCouplingStructuredMesh *m(getStructuredMesh());
case -1:
{
if(!m)
- throw INTERP_KERNEL::Exception("MEDFileStructuredMesh::getGenMeshAtLevel : level -1 requested must be non empty to be able to compute unstructured sub mesh !");
+ throw INTERP_KERNEL::Exception("MEDFileStructuredMesh::getMeshAtLevel : level -1 requested must be non empty to be able to compute unstructured sub mesh !");
buildMinusOneImplicitPartIfNeeded();
- MEDCouplingMesh *ret(_faces_if_necessary);
+ MEDCoupling1SGTUMesh *ret(_faces_if_necessary);
if(ret)
ret->incrRef();
return ret;
}
}
+std::vector<int> MEDFileStructuredMesh::getFamsNonEmptyLevels(const std::vector<std::string>& fams) const
+{
+ std::vector<int> ret;
+ const DataArrayInt *famCells(_fam_cells),*famFaces(_fam_faces);
+ if(famCells && famCells->presenceOfValue(ret))
+ ret.push_back(0);
+ if(famFaces && famFaces->presenceOfValue(ret))
+ ret.push_back(-1);
+ return ret;
+}
+
+std::vector<int> MEDFileStructuredMesh::getFamsNonEmptyLevelsExt(const std::vector<std::string>& fams) const
+{
+ std::vector<int> ret(getFamsNonEmptyLevels(fams));
+ const DataArrayInt *famNodes(_fam_nodes);
+ if(famNodes && famNodes->presenceOfValue(ret))
+ ret.push_back(1);
+ return ret;
+}
+
/*!
* Returns number of mesh entities of a given relative dimension in \a this mesh.
* \param [in] meshDimRelToMaxExt - the relative dimension of interest.
return cmesh->getNumberOfNodes();
}
+int MEDFileStructuredMesh::getNumberOfCellsAtLevel(int meshDimRelToMaxExt) const
+{
+ const MEDCouplingStructuredMesh *cmesh(getStructuredMesh());
+ if(!cmesh)
+ throw INTERP_KERNEL::Exception("MEDFileStructuredMesh::getNumberOfNodes : no cartesian mesh set !");
+ switch(meshDimRelToMaxExt)
+ {
+ case 0:
+ return cmesh->getNumberOfCells();
+ case -1:
+ return cmesh->getNumberOfCellsOfSubLevelMesh();
+ default:
+ throw INTERP_KERNEL::Exception("MEDFileStructuredMesh::getNumberOfNodes : only meshDimRelToMax=0 and meshDimRelToMax=-1 supported !");
+ }
+}
+
bool MEDFileStructuredMesh::hasImplicitPart() const
{
return true;
*/
MEDCoupling1SGTUMesh *MEDFileStructuredMesh::getImplicitFaceMesh() const
{
+ checkCartesian();
return _faces_if_necessary;
}
}
}
+int MEDFileStructuredMesh::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
+{
+ if(ct!=MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension(getMeshDimension()))
+ return 0;
+ else
+ return getNumberOfCellsAtLevel(0);
+}
+
void MEDFileStructuredMesh::whichAreNodesFetched(const MEDFileField1TSStructItem& st, const MEDFileFieldGlobsReal *globs, std::vector<bool>& nodesFetched) const
{
if(st.getNumberOfItems()!=1)
}
void MEDFileStructuredMesh::LoadStrMeshDAFromFile(med_idt fid, int meshDim, int dt, int it, const std::string& mName, MEDFileMeshReadSelector *mrs,
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt>& famCells, MEDCouplingAutoRefCountObjectPtr<DataArrayInt>& numCells, MEDCouplingAutoRefCountObjectPtr<DataArrayAsciiChar>& namesCells)
+ MCAuto<DataArrayInt>& famCells, MCAuto<DataArrayInt>& numCells, MCAuto<DataArrayAsciiChar>& namesCells)
{
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
med_geometry_type geoTypeReq=MEDFileStructuredMesh::GetGeoTypeFromMeshDim(meshDim);
{
famCells=DataArrayInt::New();
famCells->alloc(nbOfElt,1);
- MEDmeshEntityFamilyNumberRd(fid,mName.c_str(),dt,it,MED_CELL,geoTypeReq,famCells->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_CELL,geoTypeReq,famCells->getPointer()));
}
}
nbOfElt=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_CELL,geoTypeReq,MED_NUMBER,MED_NODAL,&chgt,&trsf);
{
numCells=DataArrayInt::New();
numCells->alloc(nbOfElt,1);
- MEDmeshEntityNumberRd(fid,mName.c_str(),dt,it,MED_CELL,geoTypeReq,numCells->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_CELL,geoTypeReq,numCells->getPointer()));
}
}
nbOfElt=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_CELL,geoTypeReq,MED_NAME,MED_NODAL,&chgt,&trsf);
{
namesCells=DataArrayAsciiChar::New();
namesCells->alloc(nbOfElt+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- MEDmeshEntityNameRd(fid,mName.c_str(),dt,it,MED_CELL,geoTypeReq,namesCells->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_CELL,geoTypeReq,namesCells->getPointer()));
namesCells->reAlloc(nbOfElt);//not a bug to avoid the memory corruption due to last \0 at the end
}
}
setTimeUnit(strm->getTimeUnit());
MEDFileMeshL2::ReadFamiliesAndGrps(fid,mName,_families,_groups,mrs);
med_bool chgt=MED_FALSE,trsf=MED_FALSE;
- int nbOfElt=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_FAMILY_NUMBER,MED_NODAL,&chgt,&trsf);
+ int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_FAMILY_NUMBER,MED_NODAL,&chgt,&trsf));
if(nbOfElt>0)
{
if(!mrs || mrs->isNodeFamilyFieldReading())
_fam_nodes->alloc(nbNodes,1);//yes nbNodes and not nbOfElt see next line.
if(nbNodes>nbOfElt)//yes it appends some times... It explains surely the mdump implementation. Bug revealed by PARAVIS EDF #2475 on structured.med file where only 12 first nodes are !=0 so nbOfElt=12 and nbOfNodes=378...
_fam_nodes->fillWithZero();
- MEDmeshEntityFamilyNumberRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,_fam_nodes->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,_fam_nodes->getPointer()));
}
}
nbOfElt=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_NUMBER,MED_NODAL,&chgt,&trsf);
{
_num_nodes=DataArrayInt::New();
_num_nodes->alloc(nbOfElt,1);
- MEDmeshEntityNumberRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,_num_nodes->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,_num_nodes->getPointer()));
}
}
nbOfElt=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_NAME,MED_NODAL,&chgt,&trsf);
{
_names_nodes=DataArrayAsciiChar::New();
_names_nodes->alloc(nbOfElt+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
- MEDmeshEntityNameRd(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,_names_nodes->getPointer());
+ MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,_names_nodes->getPointer()));
_names_nodes->reAlloc(nbOfElt);//not a bug to avoid the memory corruption due to last \0 at the end
}
}
med_geometry_type geoTypeReq(GetGeoTypeFromMeshDim(meshDim)),geoTypeReq2(GetGeoTypeFromMeshDim(meshDim-1));
//
if((const DataArrayInt *)_fam_cells)
- MEDmeshEntityFamilyNumberWr(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq,_fam_cells->getNumberOfTuples(),_fam_cells->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq,_fam_cells->getNumberOfTuples(),_fam_cells->getConstPointer()));
if((const DataArrayInt *)_fam_faces)
- MEDmeshEntityFamilyNumberWr(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq2,_fam_faces->getNumberOfTuples(),_fam_faces->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq2,_fam_faces->getNumberOfTuples(),_fam_faces->getConstPointer()));
if((const DataArrayInt *)_fam_nodes)
- MEDmeshEntityFamilyNumberWr(fid,maa.c_str(),_iteration,_order,MED_NODE,MED_NONE,_fam_nodes->getNumberOfTuples(),_fam_nodes->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,maa.c_str(),_iteration,_order,MED_NODE,MED_NONE,_fam_nodes->getNumberOfTuples(),_fam_nodes->getConstPointer()));
if((const DataArrayInt *)_num_cells)
- MEDmeshEntityNumberWr(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq,_num_cells->getNumberOfTuples(),_num_cells->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq,_num_cells->getNumberOfTuples(),_num_cells->getConstPointer()));
if((const DataArrayInt *)_num_faces)
- MEDmeshEntityNumberWr(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq2,_num_faces->getNumberOfTuples(),_num_faces->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq2,_num_faces->getNumberOfTuples(),_num_faces->getConstPointer()));
if((const DataArrayInt *)_num_nodes)
- MEDmeshEntityNumberWr(fid,maa.c_str(),_iteration,_order,MED_NODE,MED_NONE,_num_nodes->getNumberOfTuples(),_num_nodes->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,maa.c_str(),_iteration,_order,MED_NODE,MED_NONE,_num_nodes->getNumberOfTuples(),_num_nodes->getConstPointer()));
if((const DataArrayAsciiChar *)_names_cells)
{
if(_names_cells->getNumberOfComponents()!=MED_SNAME_SIZE)
oss << " ! The array has " << _names_cells->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq,_names_cells->getNumberOfTuples(),_names_cells->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq,_names_cells->getNumberOfTuples(),_names_cells->getConstPointer()));
}
if((const DataArrayAsciiChar *)_names_faces)
{
oss << " ! The array has " << _names_faces->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq2,_names_faces->getNumberOfTuples(),_names_faces->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,maa.c_str(),_iteration,_order,MED_CELL,geoTypeReq2,_names_faces->getNumberOfTuples(),_names_faces->getConstPointer()));
}
if((const DataArrayAsciiChar *)_names_nodes)
{
oss << " ! The array has " << _names_cells->getNumberOfComponents() << " components !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- MEDmeshEntityNameWr(fid,maa.c_str(),_iteration,_order,MED_NODE,MED_NONE,_names_nodes->getNumberOfTuples(),_names_nodes->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,maa.c_str(),_iteration,_order,MED_NODE,MED_NONE,_names_nodes->getNumberOfTuples(),_names_nodes->getConstPointer()));
}
//
MEDFileUMeshL2::WriteFamiliesAndGrps(fid,maa.c_str(),_families,_groups,_too_long_str);
*/
MEDFileCMesh *MEDFileCMesh::New(const std::string& fileName, MEDFileMeshReadSelector *mrs)
{
- std::vector<std::string> ms=MEDLoader::GetMeshNames(fileName);
+ std::vector<std::string> ms(MEDCoupling::GetMeshNames(fileName));
if(ms.empty())
{
std::ostringstream oss; oss << "MEDFileUMesh::New : no meshes in file \"" << fileName << "\" !";
MEDFileUtilities::CheckFileForRead(fileName);
MEDFileUtilities::AutoFid fid=MEDfileOpen(fileName.c_str(),MED_ACC_RDONLY);
int dt,it;
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
std::string dummy2;
- MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dt,it,dummy2);
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dummy3,dt,it,dummy2);
return new MEDFileCMesh(fid,ms.front(),dt,it,mrs);
}
return simpleRepr();
}
-MEDFileMesh *MEDFileCMesh::shallowCpy() const
+MEDFileCMesh *MEDFileCMesh::shallowCpy() const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileCMesh> ret=new MEDFileCMesh(*this);
+ MCAuto<MEDFileCMesh> ret(new MEDFileCMesh(*this));
return ret.retn();
}
return new MEDFileCMesh;
}
-MEDFileMesh *MEDFileCMesh::deepCpy() const
+MEDFileCMesh *MEDFileCMesh::deepCopy() const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileCMesh> ret=new MEDFileCMesh(*this);
+ MCAuto<MEDFileCMesh> ret(new MEDFileCMesh(*this));
+ ret->deepCpyEquivalences(*this);
if((const MEDCouplingCMesh*)_cmesh)
- ret->_cmesh=static_cast<MEDCouplingCMesh*>(_cmesh->deepCpy());
+ ret->_cmesh=static_cast<MEDCouplingCMesh*>(_cmesh->deepCopy());
ret->deepCpyAttributes();
return ret.retn();
}
MEDFileCMesh::MEDFileCMesh(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
try
{
- loadCMeshFromFile(fid,mName,dt,it,mrs);
+ loadLLWithAdditionalItems(fid,mName,dt,it,mrs);
}
catch(INTERP_KERNEL::Exception& e)
{
throw e;
}
-void MEDFileCMesh::loadCMeshFromFile(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+void MEDFileCMesh::loadLL(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
{
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
int dummy0,dummy1;
std::string dtunit;
- int mid=MEDFileMeshL2::GetMeshIdFromName(fid,mName,meshType,dummy0,dummy1,dtunit);
+ MEDCoupling::MEDCouplingAxisType axType;
+ int mid=MEDFileMeshL2::GetMeshIdFromName(fid,mName,meshType,axType,dummy0,dummy1,dtunit);
if(meshType!=CARTESIAN)
{
std::ostringstream oss; oss << "Trying to load as cartesian an existing mesh with name '" << mName << "' that is NOT cartesian !";
}
MEDFileCMeshL2 loaderl2;
loaderl2.loadAll(fid,mid,mName,dt,it);
+ setAxisType(axType);
MEDCouplingCMesh *mesh=loaderl2.getMesh();
mesh->incrRef();
_cmesh=mesh;
_cmesh=m;
}
+MEDFileMesh *MEDFileCMesh::cartesianize() const
+{
+ if(getAxisType()==AX_CART)
+ {
+ incrRef();
+ return const_cast<MEDFileCMesh *>(this);
+ }
+ else
+ {
+ const MEDCouplingCMesh *cmesh(getMesh());
+ if(!cmesh)
+ throw INTERP_KERNEL::Exception("MEDFileCMesh::cartesianize : impossible to turn into cartesian because the mesh is null !");
+ MCAuto<MEDCouplingCurveLinearMesh> clmesh(cmesh->buildCurveLinear());
+ MCAuto<DataArrayDouble> coords(clmesh->getCoords()->cartesianize(getAxisType()));
+ clmesh->setCoords(coords);
+ MCAuto<MEDFileCurveLinearMesh> ret(MEDFileCurveLinearMesh::New());
+ ret->MEDFileStructuredMesh::operator=(*this);
+ ret->setMesh(clmesh);
+ ret->setAxisType(AX_CART);
+ return ret.retn();
+ }
+}
+
void MEDFileCMesh::writeLL(med_idt fid) const
{
INTERP_KERNEL::AutoPtr<char> maa=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
MEDLoaderBase::safeStrCpy2(c.c_str(),MED_SNAME_SIZE-1,comp+i*MED_SNAME_SIZE,_too_long_str);//MED_TAILLE_PNOM-1 to avoid to write '\0' on next compo
MEDLoaderBase::safeStrCpy2(u.c_str(),MED_SNAME_SIZE-1,unit+i*MED_SNAME_SIZE,_too_long_str);//MED_TAILLE_PNOM-1 to avoid to write '\0' on next compo
}
- MEDmeshCr(fid,maa,spaceDim,spaceDim,MED_STRUCTURED_MESH,desc,dtunit,MED_SORT_DTIT,MED_CARTESIAN,comp,unit);
- MEDmeshUniversalNameWr(fid,maa);
- MEDmeshGridTypeWr(fid,maa,MED_CARTESIAN_GRID);
+ MEDFILESAFECALLERWR0(MEDmeshCr,(fid,maa,spaceDim,spaceDim,MED_STRUCTURED_MESH,desc,dtunit,MED_SORT_DTIT,MEDFileMeshL2::TraduceAxisTypeRev(getAxisType()),comp,unit));
+ if(_univ_wr_status)
+ MEDFILESAFECALLERWR0(MEDmeshUniversalNameWr,(fid,maa));
+ MEDFILESAFECALLERWR0(MEDmeshGridTypeWr,(fid,maa,MEDFileMeshL2::TraduceAxisTypeRevStruct(getAxisType())));
for(int i=0;i<spaceDim;i++)
{
const DataArrayDouble *da=_cmesh->getCoordsAt(i);
- MEDmeshGridIndexCoordinateWr(fid,maa,_iteration,_order,_time,i+1,da->getNumberOfTuples(),da->getConstPointer());
+ MEDFILESAFECALLERWR0(MEDmeshGridIndexCoordinateWr,(fid,maa,_iteration,_order,_time,i+1,da->getNumberOfTuples(),da->getConstPointer()));
}
//
std::string meshName(MEDLoaderBase::buildStringFromFortran(maa,MED_NAME_SIZE));
MEDFileCurveLinearMesh *MEDFileCurveLinearMesh::New(const std::string& fileName, MEDFileMeshReadSelector *mrs)
{
- std::vector<std::string> ms=MEDLoader::GetMeshNames(fileName);
+ std::vector<std::string> ms(MEDCoupling::GetMeshNames(fileName));
if(ms.empty())
{
std::ostringstream oss; oss << "MEDFileUMesh::New : no meshes in file \"" << fileName << "\" !";
MEDFileUtilities::CheckFileForRead(fileName);
MEDFileUtilities::AutoFid fid=MEDfileOpen(fileName.c_str(),MED_ACC_RDONLY);
int dt,it;
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingAxisType dummy3;
std::string dummy2;
- MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dt,it,dummy2);
+ MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dummy3,dt,it,dummy2);
return new MEDFileCurveLinearMesh(fid,ms.front(),dt,it,mrs);
}
return ret;
}
-MEDFileMesh *MEDFileCurveLinearMesh::shallowCpy() const
+MEDFileCurveLinearMesh *MEDFileCurveLinearMesh::shallowCpy() const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileCurveLinearMesh> ret=new MEDFileCurveLinearMesh(*this);
+ MCAuto<MEDFileCurveLinearMesh> ret(new MEDFileCurveLinearMesh(*this));
return ret.retn();
}
return new MEDFileCurveLinearMesh;
}
-MEDFileMesh *MEDFileCurveLinearMesh::deepCpy() const
+MEDFileCurveLinearMesh *MEDFileCurveLinearMesh::deepCopy() const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileCurveLinearMesh> ret=new MEDFileCurveLinearMesh(*this);
+ MCAuto<MEDFileCurveLinearMesh> ret(new MEDFileCurveLinearMesh(*this));
+ ret->deepCpyEquivalences(*this);
if((const MEDCouplingCurveLinearMesh*)_clmesh)
- ret->_clmesh=static_cast<MEDCouplingCurveLinearMesh*>(_clmesh->deepCpy());
+ ret->_clmesh=static_cast<MEDCouplingCurveLinearMesh*>(_clmesh->deepCopy());
ret->deepCpyAttributes();
return ret.retn();
}
_clmesh=m;
}
+MEDFileMesh *MEDFileCurveLinearMesh::cartesianize() const
+{
+ if(getAxisType()==AX_CART)
+ {
+ incrRef();
+ return const_cast<MEDFileCurveLinearMesh *>(this);
+ }
+ else
+ {
+ const MEDCouplingCurveLinearMesh *mesh(getMesh());
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDFileCurveLinearMesh::cartesianize : impossible to turn into cartesian because the mesh is null !");
+ const DataArrayDouble *coords(mesh->getCoords());
+ if(!coords)
+ throw INTERP_KERNEL::Exception("MEDFileCurveLinearMesh::cartesianize : coordinate pointer in mesh is null !");
+ MCAuto<MEDFileCurveLinearMesh> ret(new MEDFileCurveLinearMesh(*this));
+ MCAuto<MEDCouplingCurveLinearMesh> mesh2(mesh->clone(false));
+ MCAuto<DataArrayDouble> coordsCart(coords->cartesianize(getAxisType()));
+ mesh2->setCoords(coordsCart);
+ ret->setMesh(mesh2);
+ ret->setAxisType(AX_CART);
+ return ret.retn();
+ }
+}
+
const MEDCouplingStructuredMesh *MEDFileCurveLinearMesh::getStructuredMesh() const
{
synchronizeTinyInfoOnLeaves();
MEDFileCurveLinearMesh::MEDFileCurveLinearMesh(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
try
{
- loadCLMeshFromFile(fid,mName,dt,it,mrs);
+ loadLLWithAdditionalItems(fid,mName,dt,it,mrs);
}
catch(INTERP_KERNEL::Exception& e)
{
MEDLoaderBase::safeStrCpy2(c.c_str(),MED_SNAME_SIZE-1,comp+i*MED_SNAME_SIZE,_too_long_str);//MED_TAILLE_PNOM-1 to avoid to write '\0' on next compo
MEDLoaderBase::safeStrCpy2(u.c_str(),MED_SNAME_SIZE-1,unit+i*MED_SNAME_SIZE,_too_long_str);//MED_TAILLE_PNOM-1 to avoid to write '\0' on next compo
}
- MEDmeshCr(fid,maa,spaceDim,meshDim,MED_STRUCTURED_MESH,desc,dtunit,MED_SORT_DTIT,MED_CARTESIAN,comp,unit);
- MEDmeshUniversalNameWr(fid,maa);
- MEDmeshGridTypeWr(fid,maa,MED_CURVILINEAR_GRID);
+ MEDFILESAFECALLERWR0(MEDmeshCr,(fid,maa,spaceDim,meshDim,MED_STRUCTURED_MESH,desc,dtunit,MED_SORT_DTIT,MEDFileMeshL2::TraduceAxisTypeRev(getAxisType()),comp,unit));
+ if(_univ_wr_status)
+ MEDFILESAFECALLERWR0(MEDmeshUniversalNameWr,(fid,maa));
+ MEDFILESAFECALLERWR0(MEDmeshGridTypeWr,(fid,maa,MED_CURVILINEAR_GRID));
std::vector<int> nodeGridSt=_clmesh->getNodeGridStructure();
- MEDmeshGridStructWr(fid,maa,_iteration,_order,_time,&nodeGridSt[0]);
+ MEDFILESAFECALLERWR0(MEDmeshGridStructWr,(fid,maa,_iteration,_order,_time,&nodeGridSt[0]));
- MEDmeshNodeCoordinateWr(fid,maa,_iteration,_order,_time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->begin());
+ MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,maa,_iteration,_order,_time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->begin()));
//
std::string meshName(MEDLoaderBase::buildStringFromFortran(maa,MED_NAME_SIZE));
MEDFileStructuredMesh::writeStructuredLL(fid,meshName);
}
-void MEDFileCurveLinearMesh::loadCLMeshFromFile(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
+void MEDFileCurveLinearMesh::loadLL(med_idt fid, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
{
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
int dummy0,dummy1;
std::string dtunit;
- int mid=MEDFileMeshL2::GetMeshIdFromName(fid,mName,meshType,dummy0,dummy1,dtunit);
+ MEDCoupling::MEDCouplingAxisType axType;
+ int mid=MEDFileMeshL2::GetMeshIdFromName(fid,mName,meshType,axType,dummy0,dummy1,dtunit);
+ setAxisType(axType);
if(meshType!=CURVE_LINEAR)
{
std::ostringstream oss; oss << "Trying to load as curve linear an existing mesh with name '" << mName << "' that is NOT curve linear !";
return new MEDFileMeshMultiTS(fileName,mName);
}
-MEDFileMeshMultiTS *MEDFileMeshMultiTS::deepCpy() const
+MEDFileMeshMultiTS *MEDFileMeshMultiTS::deepCopy() const
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS> ret=MEDFileMeshMultiTS::New();
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMesh> > meshOneTs(_mesh_one_ts.size());
+ MCAuto<MEDFileMeshMultiTS> ret=MEDFileMeshMultiTS::New();
+ std::vector< MCAuto<MEDFileMesh> > meshOneTs(_mesh_one_ts.size());
std::size_t i=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMesh> >::const_iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++,i++)
+ for(std::vector< MCAuto<MEDFileMesh> >::const_iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++,i++)
if((const MEDFileMesh *)*it)
- meshOneTs[i]=(*it)->deepCpy();
+ meshOneTs[i]=(*it)->deepCopy();
ret->_mesh_one_ts=meshOneTs;
return ret.retn();
}
std::size_t MEDFileMeshMultiTS::getHeapMemorySizeWithoutChildren() const
{
- return _mesh_one_ts.capacity()*sizeof(MEDCouplingAutoRefCountObjectPtr<MEDFileMesh>);
+ return _mesh_one_ts.capacity()*sizeof(MCAuto<MEDFileMesh>);
}
std::vector<const BigMemoryObject *> MEDFileMeshMultiTS::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMesh> >::const_iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++)
+ for(std::vector< MCAuto<MEDFileMesh> >::const_iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++)
ret.push_back((const MEDFileMesh *)*it);
return ret;
}
bool MEDFileMeshMultiTS::changeNames(const std::vector< std::pair<std::string,std::string> >& modifTab)
{
bool ret=false;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMesh> >::iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++)
+ for(std::vector< MCAuto<MEDFileMesh> >::iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++)
{
MEDFileMesh *cur(*it);
if(cur)
return ret;
}
+void MEDFileMeshMultiTS::cartesianizeMe()
+{
+ for(std::vector< MCAuto<MEDFileMesh> >::iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++)
+ {
+ MEDFileMesh *cur(*it);
+ if(cur)
+ {
+ MCAuto<MEDFileMesh> ccur(cur->cartesianize());// Attention ! Do not wrap these two lines because memory leak !
+ *it=ccur;
+ }
+ }
+}
+
MEDFileMesh *MEDFileMeshMultiTS::getOneTimeStep() const
{
if(_mesh_one_ts.empty())
throw INTERP_KERNEL::Exception("MEDFileMeshMultiTS::setOneTimeStep : input pointer should be different from 0 !");
_mesh_one_ts.resize(1);
mesh1TimeStep->incrRef();
- //MEDCouplingAutoRefCountObjectPtr<MEDFileMesh> toto=mesh1TimeStep;
+ //MCAuto<MEDFileMesh> toto=mesh1TimeStep;
_mesh_one_ts[0]=mesh1TimeStep;
}
+MEDFileJoints * MEDFileMeshMultiTS::getJoints() const
+{
+ if ( MEDFileMesh* m = getOneTimeStep() )
+ return m->getJoints();
+ return 0;
+}
+
+/*!
+ * \brief Set Joints that are common to all time-stamps
+ */
+void MEDFileMeshMultiTS::setJoints( MEDFileJoints* joints )
+{
+ for(std::vector< MCAuto<MEDFileMesh> >::iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++)
+ {
+ (*it)->setJoints( joints );
+ }
+}
+
void MEDFileMeshMultiTS::write(med_idt fid) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMesh> >::const_iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++)
+ MEDFileJoints *joints(getJoints());
+ bool jointsWritten(false);
+
+ for(std::vector< MCAuto<MEDFileMesh> >::const_iterator it=_mesh_one_ts.begin();it!=_mesh_one_ts.end();it++)
{
+ if ( jointsWritten )
+ const_cast<MEDFileMesh&>(**it).setJoints( 0 );
+ else
+ jointsWritten = true;
+
(*it)->copyOptionsFrom(*this);
(*it)->write(fid);
}
+
+ (const_cast<MEDFileMeshMultiTS*>(this))->setJoints( joints ); // restore joints
}
void MEDFileMeshMultiTS::write(const std::string& fileName, int mode) const
}
void MEDFileMeshMultiTS::loadFromFile(const std::string& fileName, const std::string& mName)
-{//for the moment to be improved
- _mesh_one_ts.resize(1);
- _mesh_one_ts[0]=MEDFileMesh::New(fileName,mName,-1,-1);
+{
+ MEDFileJoints* joints = 0;
+ if ( !_mesh_one_ts.empty() && getOneTimeStep() )
+ {
+ // joints of mName already read, pass them to MEDFileMesh::New() to prevent repeated reading
+ joints = getOneTimeStep()->getJoints();
+ }
+
+ _mesh_one_ts.clear(); //for the moment to be improved
+ _mesh_one_ts.push_back( MEDFileMesh::New(fileName,mName,-1,-1,0, joints ));
}
MEDFileMeshMultiTS::MEDFileMeshMultiTS()
MEDFileMeshMultiTS::MEDFileMeshMultiTS(const std::string& fileName)
try
{
- std::vector<std::string> ms=MEDLoader::GetMeshNames(fileName);
+ std::vector<std::string> ms(MEDCoupling::GetMeshNames(fileName));
if(ms.empty())
{
std::ostringstream oss; oss << "MEDFileUMesh::New : no meshes in file \"" << fileName << "\" !";
MEDFileUtilities::CheckFileForRead(fileName);
MEDFileUtilities::AutoFid fid=MEDfileOpen(fileName.c_str(),MED_ACC_RDONLY);
int dt,it;
- ParaMEDMEM::MEDCouplingMeshType meshType;
+ MEDCoupling::MEDCouplingMeshType meshType;
std::string dummy2;
- MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dt,it,dummy2);
+ MEDCoupling::MEDCouplingAxisType dummy3;
+ MEDFileMeshL2::GetMeshIdFromName(fid,ms.front(),meshType,dummy3,dt,it,dummy2);
loadFromFile(fileName,ms.front());
}
catch(INTERP_KERNEL::Exception& e)
void MEDFileMeshes::write(med_idt fid) const
{
- checkCoherency();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++)
+ checkConsistencyLight();
+ for(std::vector< MCAuto<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++)
{
(*it)->copyOptionsFrom(*this);
(*it)->write(fid);
MEDFileUtilities::AutoFid fid=MEDfileOpen(fileName.c_str(),medmod);
std::ostringstream oss; oss << "MEDFileMesh : error on attempt to write in file : \"" << fileName << "\"";
MEDFileUtilities::CheckMEDCode(fid,fid,oss.str());
- checkCoherency();
+ checkConsistencyLight();
write(fid);
}
{
std::vector<std::string> ret(_meshes.size());
int i=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++,i++)
+ for(std::vector< MCAuto<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++,i++)
{
const MEDFileMeshMultiTS *f=(*it);
if(f)
bool MEDFileMeshes::changeNames(const std::vector< std::pair<std::string,std::string> >& modifTab)
{
bool ret=false;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS> >::iterator it=_meshes.begin();it!=_meshes.end();it++)
+ for(std::vector< MCAuto<MEDFileMeshMultiTS> >::iterator it=_meshes.begin();it!=_meshes.end();it++)
{
MEDFileMeshMultiTS *cur(*it);
if(cur)
return ret;
}
+void MEDFileMeshes::cartesianizeMe()
+{
+ for(std::vector< MCAuto<MEDFileMeshMultiTS> >::iterator it=_meshes.begin();it!=_meshes.end();it++)
+ {
+ MEDFileMeshMultiTS *cur(*it);
+ if(cur)
+ cur->cartesianizeMe();
+ }
+}
+
void MEDFileMeshes::resize(int newSize)
{
_meshes.resize(newSize);
void MEDFileMeshes::loadFromFile(const std::string& fileName)
{
- std::vector<std::string> ms=MEDLoader::GetMeshNames(fileName);
+ std::vector<std::string> ms(MEDCoupling::GetMeshNames(fileName));
int i=0;
_meshes.resize(ms.size());
for(std::vector<std::string>::const_iterator it=ms.begin();it!=ms.end();it++,i++)
{
}
-MEDFileMeshes *MEDFileMeshes::deepCpy() const
+MEDFileMeshes *MEDFileMeshes::deepCopy() const
{
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS> > meshes(_meshes.size());
+ std::vector< MCAuto<MEDFileMeshMultiTS> > meshes(_meshes.size());
std::size_t i=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++,i++)
+ for(std::vector< MCAuto<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++,i++)
if((const MEDFileMeshMultiTS *)*it)
- meshes[i]=(*it)->deepCpy();
- MEDCouplingAutoRefCountObjectPtr<MEDFileMeshes> ret=MEDFileMeshes::New();
+ meshes[i]=(*it)->deepCopy();
+ MCAuto<MEDFileMeshes> ret=MEDFileMeshes::New();
ret->_meshes=meshes;
return ret.retn();
}
std::size_t MEDFileMeshes::getHeapMemorySizeWithoutChildren() const
{
- return _meshes.capacity()*(sizeof(MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS>));
+ return _meshes.capacity()*(sizeof(MCAuto<MEDFileMeshMultiTS>));
}
std::vector<const BigMemoryObject *> MEDFileMeshes::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++)
+ for(std::vector< MCAuto<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++)
ret.push_back((const MEDFileMeshMultiTS *)*it);
return ret;
}
oss << " - #" << i << " \"" << mns[i] << "\"\n";
}
-void MEDFileMeshes::checkCoherency() const
+void MEDFileMeshes::checkConsistencyLight() const
{
- static const char MSG[]="MEDFileMeshes::checkCoherency : mesh at rank ";
+ static const char MSG[]="MEDFileMeshes::checkConsistencyLight : mesh at rank ";
int i=0;
std::set<std::string> s;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++,i++)
+ for(std::vector< MCAuto<MEDFileMeshMultiTS> >::const_iterator it=_meshes.begin();it!=_meshes.end();it++,i++)
{
const MEDFileMeshMultiTS *elt=(*it);
if(!elt)