-// Copyright (C) 2007-2013 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2023 CEA, EDF
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
-// version 2.1 of the License.
+// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
#include "MEDFileField.hxx"
#include "MEDFileMesh.hxx"
+#include "MEDCouplingFieldDiscretization.hxx"
#include "CellModel.hxx"
-using namespace ParaMEDMEM;
+using namespace MEDCoupling;
-const unsigned char MEDMeshMultiLev::PARAMEDMEM_2_VTKTYPE[MEDMeshMultiLev::PARAMEDMEM_2_VTKTYPE_LGTH]=
- {1,3,21,5,9,7,22,34,23,28,255,255,255,255,10,14,13,255,12,255,24,255,16,27,255,26,255,29,255,255,25,42,255,4};
+const unsigned char *MEDMeshMultiLev::PARAMEDMEM_2_VTKTYPE=MEDCOUPLING2VTKTYPETRADUCER;
+
+const unsigned char MEDMeshMultiLev::HEXA27_PERM_ARRAY[27]={0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,24,22,21,23,20,25,26};
const char MEDFileField1TSStructItem2::NEWLY_CREATED_PFL_NAME[]="???";
std::size_t MEDFileMeshStruct::getHeapMemorySizeWithoutChildren() const
{
std::size_t ret(0);
- for(std::vector< std::vector<int> >::const_iterator it0=_geo_types_distrib.begin();it0!=_geo_types_distrib.end();it0++)
+ for(std::vector< std::vector<mcIdType> >::const_iterator it0=_geo_types_distrib.begin();it0!=_geo_types_distrib.end();it0++)
ret+=(*it0).capacity()*sizeof(int);
- ret+=_geo_types_distrib.capacity()*sizeof(std::vector<int>);
+ ret+=_geo_types_distrib.capacity()*sizeof(std::vector<mcIdType>);
return ret;
}
-std::vector<const BigMemoryObject *> MEDFileMeshStruct::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileMeshStruct::getDirectChildrenWithNull() const
{
return std::vector<const BigMemoryObject *>();
}
MEDFileMeshStruct::MEDFileMeshStruct(const MEDFileMesh *mesh):_mesh(mesh)
{
- std::vector<int> levs=mesh->getNonEmptyLevels();
+ std::vector<int> levs(mesh->getNonEmptyLevels());
_name=mesh->getName();
_nb_nodes=mesh->getNumberOfNodes();
- _geo_types_distrib.resize(levs.size());
- for(std::vector<int>::const_iterator lev=levs.begin();lev!=levs.end();lev++)
- _geo_types_distrib[-(*lev)]=mesh->getDistributionOfTypes(*lev);
+ if(!levs.empty())
+ {
+ _geo_types_distrib.resize(-(*std::min_element(levs.begin(),levs.end()))+1);
+ for(std::vector<int>::const_iterator lev=levs.begin();lev!=levs.end();lev++)
+ _geo_types_distrib[-(*lev)]=mesh->getDistributionOfTypes(*lev);
+ }
}
int MEDFileMeshStruct::getLevelOfGeoType(INTERP_KERNEL::NormalizedCellType t) const
{
int j=0;
- for(std::vector< std::vector<int> >::const_iterator it1=_geo_types_distrib.begin();it1!=_geo_types_distrib.end();it1++,j--)
+ for(std::vector< std::vector<mcIdType> >::const_iterator it1=_geo_types_distrib.begin();it1!=_geo_types_distrib.end();it1++,j--)
{
std::size_t sz=(*it1).size();
if(sz%3!=0)
throw INTERP_KERNEL::Exception("MEDFileMeshStruct::getLevelOfGeoType : The specified geometric type is not present in the mesh structure !");
}
-int MEDFileMeshStruct::getNumberOfElemsOfGeoType(INTERP_KERNEL::NormalizedCellType t) const
+/*!
+ * \sa MEDFileMeshStruct::doesManageGeoType
+ */
+mcIdType MEDFileMeshStruct::getNumberOfElemsOfGeoType(INTERP_KERNEL::NormalizedCellType t) const
{
- for(std::vector< std::vector<int> >::const_iterator it1=_geo_types_distrib.begin();it1!=_geo_types_distrib.end();it1++)
+ for(std::vector< std::vector<mcIdType> >::const_iterator it1=_geo_types_distrib.begin();it1!=_geo_types_distrib.end();it1++)
{
std::size_t sz=(*it1).size();
if(sz%3!=0)
throw INTERP_KERNEL::Exception("The specified geometric type is not present in the mesh structure !");
}
+/*!
+ * \sa MEDFileMeshStruct::getNumberOfElemsOfGeoType
+ */
+bool MEDFileMeshStruct::doesManageGeoType(INTERP_KERNEL::NormalizedCellType t) const
+{
+ for(std::vector< std::vector<mcIdType> >::const_iterator it1=_geo_types_distrib.begin();it1!=_geo_types_distrib.end();it1++)
+ {
+ std::size_t sz=(*it1).size();
+ if(sz%3!=0)
+ throw INTERP_KERNEL::Exception("MEDFileMeshStruct::doesManageGeoType : internal error in code !");
+ std::size_t nbGeo=sz/3;
+ for(std::size_t i=0;i<nbGeo;i++)
+ if((*it1)[3*i]==(int)t)
+ return true;
+ }
+ return false;
+}
+
+void MEDFileMeshStruct::appendIfImplicitType(INTERP_KERNEL::NormalizedCellType t)
+{
+ if(!_mesh->hasImplicitPart())
+ throw INTERP_KERNEL::Exception("MEDFileMeshStruct::appendIfImplicitType : by default no implicit geo type can be appended !");
+ static const char MSG[]="MEDFileMeshStruct::appendIfImplicitType : the distribution does not looks like structured standard !";
+ if(_geo_types_distrib.size()!=1)
+ throw INTERP_KERNEL::Exception(MSG);
+ std::size_t sz(_geo_types_distrib[0].size());
+ if(sz%3!=0)
+ throw INTERP_KERNEL::Exception("MEDFileMeshStruct::appendIfImplicitType : internal error in code !");
+ std::size_t nbGeo(sz/3);
+ if(nbGeo!=1)
+ throw INTERP_KERNEL::Exception(MSG);
+ std::vector<mcIdType> arr(3); arr[0]=(mcIdType)t; arr[1]=_mesh->buildImplicitPartIfAny(t); arr[2]=-1;
+ _geo_types_distrib.push_back(arr);
+}
+
+
int MEDFileMeshStruct::getNumberOfLevs() const
{
return (int)_geo_types_distrib.size();
return 0;
}
-std::vector<const BigMemoryObject *> MEDMeshMultiLev::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDMeshMultiLev::getDirectChildrenWithNull() const
{
return std::vector<const BigMemoryObject *>();
}
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::New : unrecognized type of mesh ! Must be in [MEDFileUMesh,MEDFileCMesh,MEDFileCurveLinearMesh] !");
}
-MEDMeshMultiLev *MEDMeshMultiLev::New(const MEDFileMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities)
+MEDMeshMultiLev *MEDMeshMultiLev::New(const MEDFileMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities)
{
if(!m)
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::New 2 : null input pointer !");
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::New 2 : unrecognized type of mesh ! Must be in [MEDFileUMesh,MEDFileCMesh,MEDFileCurveLinearMesh] !");
}
-MEDMeshMultiLev *MEDMeshMultiLev::NewOnlyOnNode(const MEDFileMesh *m, const DataArrayInt *pflOnNode)
+MEDMeshMultiLev *MEDMeshMultiLev::NewOnlyOnNode(const MEDFileMesh *m, const DataArrayIdType *pflOnNode)
{
- std::vector<int> levs(1,0);
- MEDCouplingAutoRefCountObjectPtr<MEDMeshMultiLev> ret(MEDMeshMultiLev::New(m,levs));
+ MCAuto<MEDMeshMultiLev> ret(MEDMeshMultiLev::New(m,m->getNonEmptyLevels()));
ret->selectPartOfNodes(pflOnNode);
return ret.retn();
}
-void MEDMeshMultiLev::setNodeReduction(const DataArrayInt *nr)
+void MEDMeshMultiLev::setNodeReduction(const DataArrayIdType *nr)
{
if(nr)
nr->incrRef();
- _node_reduction=const_cast<DataArrayInt*>(nr);
+ _node_reduction=const_cast<DataArrayIdType*>(nr);
+}
+
+void MEDMeshMultiLev::setCellReduction(const DataArrayIdType *cr)
+{
+ if(_pfls.size()!=1)
+ throw INTERP_KERNEL::Exception("MEDMeshMultiLev::setCellReduction : can be used only for single geo type mesh !");
+ _pfls[0]=const_cast<DataArrayIdType*>(cr);
+ if(cr)
+ cr->incrRef();
}
bool MEDMeshMultiLev::isFastlyTheSameStruct(const MEDFileField1TSStructItem& fst, const MEDFileFieldGlobsReal *globs) const
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::isFastlyTheSameStruct : unexpected situation for nodes !");
const MEDFileField1TSStructItem2& p(fst[0]);
std::string pflName(p.getPflName());
- const DataArrayInt *nr(_node_reduction);
+ const DataArrayIdType *nr(_node_reduction);
if(pflName.empty() && !nr)
return true;
+ if(!pflName.empty() && !nr)
+ return false;
if(pflName==nr->getName())
return true;
return false;
std::size_t sz(fst.getNumberOfItems());
if(sz!=_geo_types.size())
return false;
- int strt(0);
- for(std::size_t i=0;i<sz;i++)
+ mcIdType strt(0);
+ for(unsigned int i=0;i<sz;i++)
{
const MEDFileField1TSStructItem2& p(fst[i]);
if(!p.isFastlyEqual(strt,_geo_types[i],getPflNameOfId(i).c_str()))
DataArray *MEDMeshMultiLev::buildDataArray(const MEDFileField1TSStructItem& fst, const MEDFileFieldGlobsReal *globs, const DataArray *vals) const
{
- MEDCouplingAutoRefCountObjectPtr<DataArray> ret(const_cast<DataArray *>(vals)); ret->incrRef();
+ MCAuto<DataArray> ret(const_cast<DataArray *>(vals)); ret->incrRef();
if(isFastlyTheSameStruct(fst,globs))
return ret.retn();
else
return constructDataArray(fst,globs,vals);
}
+/*!
+ * \param [out] famIds - Can be null. If not null the instance has to be dealt by the caller (decrRef).
+ * \param [out] isWithoutCopy - When true the returned instance \a famIds if not null is directly those in the data structure.
+ */
+void MEDMeshMultiLev::retrieveFamilyIdsOnCells(DataArrayIdType *& famIds, bool& isWithoutCopy) const
+{
+ const DataArrayIdType *fids(_cell_fam_ids);
+ if(!fids)
+ { famIds=0; isWithoutCopy=true; return ; }
+ std::size_t sz(_geo_types.size());
+ bool presenceOfPfls(false);
+ for(std::size_t i=0;i<sz && !presenceOfPfls;i++)
+ {
+ const DataArrayIdType *pfl(_pfls[i]);
+ if(pfl)
+ presenceOfPfls=true;
+ }
+ if(!presenceOfPfls)
+ { famIds=const_cast<DataArrayIdType *>(fids); famIds->incrRef(); isWithoutCopy=_mesh->isObjectInTheProgeny(famIds); return ; }
+ //bad luck the slowest part
+ isWithoutCopy=false;
+ std::vector< MCAuto<DataArrayIdType> > retSafe(sz);
+ std::vector< const DataArrayIdType *> ret(sz);
+ mcIdType start(0);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const DataArrayIdType *pfl(_pfls[i]);
+ mcIdType lgth(_nb_entities[i]);
+ if(pfl)
+ {
+ MCAuto<DataArrayIdType> tmp(fids->selectByTupleIdSafeSlice(start,start+lgth,1));
+ retSafe[i]=tmp->selectByTupleIdSafe(pfl->begin(),pfl->end());
+ }
+ else
+ {
+ retSafe[i]=fids->selectByTupleIdSafeSlice(start,start+lgth,1);
+ }
+ ret[i]=retSafe[i];
+ start+=lgth;
+ }
+ famIds=DataArrayIdType::Aggregate(ret);
+}
+
+/*!
+ * \param [out] numIds - Can be null. If not null the instance has to be dealt by the caller (decrRef).
+ * \param [out] isWithoutCopy - When true the returned instance \a numIds if not null is directly those in the data structure.
+ */
+void MEDMeshMultiLev::retrieveNumberIdsOnCells(DataArrayIdType *& numIds, bool& isWithoutCopy) const
+{
+ const DataArrayIdType *nids(_cell_num_ids);
+ if(!nids)
+ { numIds=0; isWithoutCopy=true; return ; }
+ std::size_t sz(_geo_types.size());
+ bool presenceOfPfls(false);
+ for(std::size_t i=0;i<sz && !presenceOfPfls;i++)
+ {
+ const DataArrayIdType *pfl(_pfls[i]);
+ if(pfl)
+ presenceOfPfls=true;
+ }
+ if(!presenceOfPfls)
+ { numIds=const_cast<DataArrayIdType *>(nids); numIds->incrRef(); isWithoutCopy=_mesh->isObjectInTheProgeny(numIds); return ; }
+ //bad luck the slowest part
+ isWithoutCopy=false;
+ std::vector< MCAuto<DataArrayIdType> > retSafe(sz);
+ std::vector< const DataArrayIdType *> ret(sz);
+ mcIdType start(0);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const DataArrayIdType *pfl(_pfls[i]);
+ mcIdType lgth(_nb_entities[i]);
+ if(pfl)
+ {
+ MCAuto<DataArrayIdType> tmp(nids->selectByTupleIdSafeSlice(start,start+lgth,1));
+ retSafe[i]=tmp->selectByTupleIdSafe(pfl->begin(),pfl->end());
+ }
+ else
+ {
+ retSafe[i]=nids->selectByTupleIdSafeSlice(start,start+lgth,1);
+ }
+ ret[i]=retSafe[i];
+ start+=lgth;
+ }
+ numIds=DataArrayIdType::Aggregate(ret);
+}
+
+/*!
+ * \param [out] famIds - Can be null. If not null the instance has to be dealt by the caller (decrRef).
+ * \param [out] isWithoutCopy - When true the returned instance \a famIds if not null is directly those in the data structure.
+ */
+void MEDMeshMultiLev::retrieveFamilyIdsOnNodes(DataArrayIdType *& famIds, bool& isWithoutCopy) const
+{
+ const DataArrayIdType *fids(_node_fam_ids);
+ if(!fids)
+ { famIds=0; isWithoutCopy=true; return ; }
+ const DataArrayIdType *nr(_node_reduction);
+ if(nr)
+ {
+ isWithoutCopy=false;
+ famIds=fids->selectByTupleIdSafe(nr->begin(),nr->end());
+ }
+ else
+ {
+ famIds=const_cast<DataArrayIdType *>(fids); famIds->incrRef();
+ isWithoutCopy=_mesh->isObjectInTheProgeny(famIds);
+ }
+}
+
+/*!
+ * \param [out] numIds - Can be null. If not null the instance has to be dealt by the caller (decrRef).
+ * \param [out] isWithoutCopy - When true the returned instance \a numIds if not null is directly those in the data structure.
+ */
+void MEDMeshMultiLev::retrieveNumberIdsOnNodes(DataArrayIdType *& numIds, bool& isWithoutCopy) const
+{
+ const DataArrayIdType *fids(_node_num_ids);
+ if(!fids)
+ { numIds=0; isWithoutCopy=true; return ; }
+ const DataArrayIdType *nr(_node_reduction);
+ if(nr)
+ {
+ isWithoutCopy=false;
+ numIds=fids->selectByTupleIdSafe(nr->begin(),nr->end());
+ }
+ else
+ {
+ numIds=const_cast<DataArrayIdType *>(fids); numIds->incrRef();
+ isWithoutCopy=_mesh->isObjectInTheProgeny(numIds);
+ }
+}
+
+/*!
+ * This method returns, if any, a new object containing the global node ids **BUT CONTRARY TO OTHER RETRIEVE METHODS** the returned object is always a NON AGGREGATED object. So the returned object if not null
+ * can be used as this safely.
+ */
+DataArrayIdType *MEDMeshMultiLev::retrieveGlobalNodeIdsIfAny() const
+{
+ const MEDFileUMesh *umesh(dynamic_cast<const MEDFileUMesh *>(_mesh));
+ if(!umesh)
+ return nullptr;
+ const PartDefinition *pd(umesh->getPartDefAtLevel(1));
+ if(!pd)
+ {
+ MCAuto<DataArrayIdType> gni = umesh->getGlobalNumFieldAtLevel(1);
+ if(gni.isNull())
+ return nullptr;
+ return gni->deepCopy();
+ }
+ MCAuto<DataArrayIdType> tmp(pd->toDAI());
+ const DataArrayIdType *tmpCpp(tmp);
+ if(!tmpCpp)
+ return nullptr;
+ //
+ const DataArrayIdType *nr(_node_reduction);
+ if(nr)
+ return tmp->selectByTupleIdSafe(nr->begin(),nr->end());
+ else
+ return tmp->deepCopy();// Yes a deep copy is needed because this method has to return a non aggregated object !
+}
+
+std::vector< INTERP_KERNEL::NormalizedCellType > MEDMeshMultiLev::getGeoTypes() const
+{
+ return _geo_types;
+}
+
+void MEDMeshMultiLev::setFamilyIdsOnCells(DataArrayIdType *famIds)
+{
+ _cell_fam_ids=famIds;
+ if(famIds)
+ famIds->incrRef();
+}
+
+void MEDMeshMultiLev::setNumberIdsOnCells(DataArrayIdType *numIds)
+{
+ _cell_num_ids=numIds;
+ if(numIds)
+ numIds->incrRef();
+}
+
+void MEDMeshMultiLev::setFamilyIdsOnNodes(DataArrayIdType *famIds)
+{
+ _node_fam_ids=famIds;
+ if(famIds)
+ famIds->incrRef();
+}
+
+void MEDMeshMultiLev::setNumberIdsOnNodes(DataArrayIdType *numIds)
+{
+ _node_num_ids=numIds;
+ if(numIds)
+ numIds->incrRef();
+}
+
std::string MEDMeshMultiLev::getPflNameOfId(int id) const
{
std::size_t sz(_pfls.size());
if(id<0 || id>=(int)sz)
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::getPflNameOfId : invalid input id !");
- const DataArrayInt *pfl(_pfls[id]);
+ const DataArrayIdType *pfl(_pfls[id]);
if(!pfl)
return std::string("");
return pfl->getName();
* Returns the number of cells having geometric type \a t.
* The profiles are **NOT** taken into account here.
*/
-int MEDMeshMultiLev::getNumberOfCells(INTERP_KERNEL::NormalizedCellType t) const
+mcIdType MEDMeshMultiLev::getNumberOfCells(INTERP_KERNEL::NormalizedCellType t) const
{
std::size_t sz(_nb_entities.size());
for(std::size_t i=0;i<sz;i++)
if(_geo_types[i]==t)
- return _nb_entities[i];
+ return _nb_entities[i];
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::getNumberOfCells : not existing geometric type in this !");
}
-int MEDMeshMultiLev::getNumberOfNodes() const
+mcIdType MEDMeshMultiLev::getNumberOfNodes() const
{
return _nb_nodes;
}
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::constructDataArray : unexpected situation for nodes !");
const MEDFileField1TSStructItem2& p(fst[0]);
std::string pflName(p.getPflName());
- const DataArrayInt *nr(_node_reduction);
+ const DataArrayIdType *nr(_node_reduction);
if(pflName.empty() && !nr)
- return vals->deepCpy();
+ return vals->deepCopy();
if(pflName.empty() && nr)
- throw INTERP_KERNEL::Exception("MEDMeshMultiLev::constructDataArray : unexpected situation for nodes 2 !");
+ throw INTERP_KERNEL::Exception("MEDMeshMultiLev::constructDataArray : unexpected situation for nodes 2 !");
if(!pflName.empty() && nr)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p1(globs->getProfile(pflName.c_str())->deepCpy());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p2(nr->deepCpy());
+ MCAuto<DataArrayIdType> p1(globs->getProfile(pflName.c_str())->deepCopy());
+ MCAuto<DataArrayIdType> p2(nr->deepCopy());
p1->sort(true); p2->sort(true);
if(!p1->isEqualWithoutConsideringStr(*p2))
- throw INTERP_KERNEL::Exception("MEDMeshMultiLev::constructDataArray : unexpected situation for nodes 3 !");
- p1=DataArrayInt::FindPermutationFromFirstToSecond(globs->getProfile(pflName.c_str()),nr);
- MEDCouplingAutoRefCountObjectPtr<DataArray> ret(vals->deepCpy());
+ throw INTERP_KERNEL::Exception("MEDMeshMultiLev::constructDataArray : it appears that a profile on nodes does not cover the cells correctly !");
+ p1=DataArrayIdType::FindPermutationFromFirstToSecond(globs->getProfile(pflName.c_str()),nr);
+ MCAuto<DataArray> ret(vals->deepCopy());
ret->renumberInPlace(p1->begin());
return ret.retn();
}
if(!pflName.empty() && !nr)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p1(globs->getProfile(pflName.c_str())->deepCpy());
+ MCAuto<DataArrayIdType> p1(globs->getProfile(pflName.c_str())->deepCopy());
p1->sort(true);
- if(!p1->isIdentity() || p1->getNumberOfTuples()!=getNumberOfNodes())
+ if(!p1->isIota(getNumberOfNodes()))
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::constructDataArray : unexpected situation for nodes 4 !");
- MEDCouplingAutoRefCountObjectPtr<DataArray> ret(vals->deepCpy());
+ MCAuto<DataArray> ret(vals->deepCopy());
ret->renumberInPlace(globs->getProfile(pflName.c_str())->begin());
return ret.retn();
}
if(s.size()!=_geo_types.size())
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::constructDataArray : unexpected situation for cells 2 !");
std::vector< const DataArray *> arr(s.size());
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArray> > arrSafe(s.size());
+ std::vector< MCAuto<DataArray> > arrSafe(s.size());
int iii(0);
- int nc(vals->getNumberOfComponents());
+ mcIdType nc(ToIdType(vals->getNumberOfComponents()));
std::vector<std::string> compInfo(vals->getInfoOnComponents());
for(std::vector< INTERP_KERNEL::NormalizedCellType >::const_iterator it=_geo_types.begin();it!=_geo_types.end();it++,iii++)
{
- const DataArrayInt *thisP(_pfls[iii]);
+ const DataArrayIdType *thisP(_pfls[iii]);
std::vector<const MEDFileField1TSStructItem2 *> ps;
for(std::size_t i=0;i<sz;i++)
{
if(ps.size()==1)
{
int nbi(ps[0]->getNbOfIntegrationPts(globs));
- const DataArrayInt *otherP(ps[0]->getPfl(globs));
+ const DataArrayIdType *otherP(ps[0]->getPfl(globs));
const std::pair<int,int>& strtStop(ps[0]->getStartStop());
- MEDCouplingAutoRefCountObjectPtr<DataArray> ret(vals->selectByTupleId2(strtStop.first,strtStop.second,1));
+ MCAuto<DataArray> ret(vals->selectByTupleIdSafeSlice(strtStop.first,strtStop.second,1));
if(!thisP && !otherP)
{
arrSafe[iii]=ret; arr[iii]=ret;
}
if(thisP && otherP)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p1(otherP->invertArrayN2O2O2N(getNumberOfCells(ps[0]->getGeo())));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p2(thisP->deepCpy());
+ MCAuto<DataArrayIdType> p1(otherP->invertArrayN2O2O2N(getNumberOfCells(ps[0]->getGeo())));
+ MCAuto<DataArrayIdType> p2(thisP->deepCopy());
p2->transformWithIndArr(p1->begin(),p1->end());
- //p1=p2->getIdsNotEqual(-1);
+ //p1=p2->findIdsNotEqual(-1);
//p1=p2->selectByTupleIdSafe(p1->begin(),p1->end());
ret->rearrange(nbi*nc); ret=ret->selectByTupleIdSafe(p2->begin(),p2->end()); ret->rearrange(nc); ret->setInfoOnComponents(compInfo);
arrSafe[iii]=ret; arr[iii]=ret;
}
if(!thisP && otherP)
{
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p1(otherP->deepCpy());
+ MCAuto<DataArrayIdType> p1(otherP->deepCopy());
p1->sort(true);
p1->checkAllIdsInRange(0,getNumberOfCells(ps[0]->getGeo()));
- p1=DataArrayInt::FindPermutationFromFirstToSecond(otherP,p1);
+ p1=DataArrayIdType::FindPermutationFromFirstToSecond(otherP,p1);
ret->rearrange(nbi*nc); ret->renumberInPlace(p1->begin()); ret->rearrange(nc); ret->setInfoOnComponents(compInfo);
arrSafe[iii]=ret; arr[iii]=ret;
continue;
}
else
{
- std::vector< const DataArrayInt * >otherPS(ps.size());
+ std::vector< const DataArrayIdType * >otherPS(ps.size());
std::vector< const DataArray * > arr2(ps.size());
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArray> > arr2Safe(ps.size());
- std::vector< const DataArrayInt * > nbis(ps.size());
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > nbisSafe(ps.size());
+ std::vector< MCAuto<DataArray> > arr2Safe(ps.size());
+ std::vector< const DataArrayIdType * > nbis(ps.size());
+ std::vector< MCAuto<DataArrayIdType> > nbisSafe(ps.size());
int jj(0);
for(std::vector<const MEDFileField1TSStructItem2 *>::const_iterator it2=ps.begin();it2!=ps.end();it2++,jj++)
{
int nbi((*it2)->getNbOfIntegrationPts(globs));
- const DataArrayInt *otherPfl((*it2)->getPfl(globs));
+ const DataArrayIdType *otherPfl((*it2)->getPfl(globs));
const std::pair<int,int>& strtStop((*it2)->getStartStop());
- MEDCouplingAutoRefCountObjectPtr<DataArray> ret2(vals->selectByTupleId2(strtStop.first,strtStop.second,1));
+ MCAuto<DataArray> ret2(vals->selectByTupleIdSafeSlice(strtStop.first,strtStop.second,1));
if(!otherPfl)
throw INTERP_KERNEL::Exception("MEDMeshMultiLev::constructDataArray : unexpected situation for cells 4 !");
arr2[jj]=ret2; arr2Safe[jj]=ret2; otherPS[jj]=otherPfl;
- nbisSafe[jj]=DataArrayInt::New(); nbisSafe[jj]->alloc(otherPfl->getNumberOfTuples(),1); nbisSafe[jj]->fillWithValue(nbi);
+ nbisSafe[jj]=DataArrayIdType::New(); nbisSafe[jj]->alloc(otherPfl->getNumberOfTuples(),1); nbisSafe[jj]->fillWithValue(nbi);
nbis[jj]=nbisSafe[jj];
}
- MEDCouplingAutoRefCountObjectPtr<DataArray> arr3(DataArray::Aggregate(arr2));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> otherP(DataArrayInt::Aggregate(otherPS));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> zenbis(DataArrayInt::Aggregate(nbis));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> otherPN(otherP->invertArrayN2O2O2N(getNumberOfCells(*it)));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p1;
+ MCAuto<DataArray> arr3(DataArray::Aggregate(arr2));
+ MCAuto<DataArrayIdType> otherP(DataArrayIdType::Aggregate(otherPS));
+ MCAuto<DataArrayIdType> zenbis(DataArrayIdType::Aggregate(nbis));
+ MCAuto<DataArrayIdType> otherPN(otherP->invertArrayN2O2O2N(getNumberOfCells(*it)));
+ MCAuto<DataArrayIdType> p1;
if(thisP)
- p1=DataArrayInt::FindPermutationFromFirstToSecond(otherP,thisP);
+ p1=DataArrayIdType::FindPermutationFromFirstToSecond(otherP,thisP);
else
- p1=otherP->deepCpy();
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> zenbisN(zenbis->renumber(p1->begin()));
- zenbisN->computeOffsets2();
+ p1=otherP->deepCopy();
+ MCAuto<DataArrayIdType> zenbisN(zenbis->renumber(p1->begin()));
+ zenbisN->computeOffsetsFull();
jj=0;
for(std::vector<const MEDFileField1TSStructItem2 *>::const_iterator it2=ps.begin();it2!=ps.end();it2++,jj++)
{
//int nbi((*it2)->getNbOfIntegrationPts(globs));
- const DataArrayInt *otherPfl((*it2)->getPfl(globs));
+ const DataArrayIdType *otherPfl((*it2)->getPfl(globs));
const std::pair<int,int>& strtStop((*it2)->getStartStop());
- MEDCouplingAutoRefCountObjectPtr<DataArray> ret2(vals->selectByTupleId2(strtStop.first,strtStop.second,1));
+ MCAuto<DataArray> ret2(vals->selectByTupleIdSafeSlice(strtStop.first,strtStop.second,1));
//
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p2(otherPfl->deepCpy());
+ MCAuto<DataArrayIdType> p2(otherPfl->deepCopy());
p2->transformWithIndArr(otherPN->begin(),otherPN->end());
p2->transformWithIndArr(p1->begin(),p1->end());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> idsN(p2->buildExplicitArrByRanges(zenbisN));
+ MCAuto<DataArrayIdType> idsN(p2->buildExplicitArrByRanges(zenbisN));
arr3->setPartOfValuesBase3(ret2,idsN->begin(),idsN->end(),0,nc,1);
}
arrSafe[iii]=arr3; arr[iii]=arr3;
}
}
-MEDMeshMultiLev::MEDMeshMultiLev()
+/*!
+ * This method is called to add NORM_POINT1 cells in \a this so that orphan nodes in \a verticesToAdd will be fetched.
+ */
+void MEDMeshMultiLev::appendVertices(const DataArrayIdType *verticesToAdd, DataArrayIdType *nr)
+{
+ mcIdType nbOfVertices(verticesToAdd->getNumberOfTuples());
+ std::size_t sz(_pfls.size());
+ _pfls.resize(sz+1);
+ _geo_types.resize(sz+1,INTERP_KERNEL::NORM_POINT1);
+ _nb_entities.resize(sz+1,nbOfVertices);
+ _node_reduction=nr; nr->incrRef();
+ _nb_nodes+=nbOfVertices;
+ const DataArrayIdType *cf(_cell_fam_ids),*cn(_cell_num_ids),*nf(_node_fam_ids),*nn(_node_num_ids);
+ if(cf)
+ {
+ MCAuto<DataArrayIdType> tmp;
+ std::vector<const DataArrayIdType *> a(2);
+ a[0]=cf;
+ if(nf)
+ tmp=nf->selectByTupleIdSafe(verticesToAdd->begin(),verticesToAdd->end());
+ else
+ {
+ tmp=DataArrayIdType::New(); tmp->alloc(nbOfVertices,1); tmp->fillWithZero();
+ }
+ a[1]=tmp;
+ _cell_fam_ids=DataArrayIdType::Aggregate(a);
+ }
+ if(cn)
+ {
+ MCAuto<DataArrayIdType> tmp;
+ std::vector<const DataArrayIdType *> a(2);
+ a[0]=cn;
+ if(nn)
+ tmp=nn->selectByTupleIdSafe(verticesToAdd->begin(),verticesToAdd->end());
+ else
+ {
+ tmp=DataArrayIdType::New(); tmp->alloc(nbOfVertices,1); tmp->fillWithZero();
+ }
+ a[1]=tmp;
+ _cell_num_ids=DataArrayIdType::Aggregate(a);
+ }
+}
+
+MEDMeshMultiLev::MEDMeshMultiLev(const MEDFileMesh *mesh):_mesh(mesh),_nb_nodes(0)
{
}
-MEDMeshMultiLev::MEDMeshMultiLev(int nbNodes, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities):_geo_types(gts),_nb_entities(nbEntities),_nb_nodes(nbNodes)
+MEDMeshMultiLev::MEDMeshMultiLev(const MEDFileMesh *mesh, mcIdType nbNodes, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities):_mesh(mesh),_geo_types(gts),_nb_entities(nbEntities),_nb_nodes(nbNodes)
{
std::size_t sz(_geo_types.size());
if(sz!=pfls.size() || sz!=nbEntities.size())
{
if(pfls[i])
pfls[i]->incrRef();
- _pfls[i]=const_cast<DataArrayInt *>(pfls[i]);
+ _pfls[i]=const_cast<DataArrayIdType *>(pfls[i]);
}
}
-MEDMeshMultiLev::MEDMeshMultiLev(const MEDMeshMultiLev& other):RefCountObject(other),_pfls(other._pfls),_geo_types(other._geo_types),_nb_entities(other._nb_entities),_node_reduction(other._node_reduction),_nb_nodes(other._nb_nodes)
+MEDMeshMultiLev::MEDMeshMultiLev(const MEDMeshMultiLev& other):RefCountObject(other),_mesh(other._mesh),_pfls(other._pfls),_geo_types(other._geo_types),_nb_entities(other._nb_entities),_node_reduction(other._node_reduction),_nb_nodes(other._nb_nodes),_cell_fam_ids(other._cell_fam_ids),_cell_num_ids(other._cell_num_ids),_node_fam_ids(other._node_fam_ids),_node_num_ids(other._node_num_ids)
{
}
return new MEDUMeshMultiLev(m,levs);
}
-MEDUMeshMultiLev::MEDUMeshMultiLev(const MEDFileUMesh *m, const std::vector<int>& levs)
+MEDUMeshMultiLev::MEDUMeshMultiLev(const MEDFileUMesh *m, const std::vector<int>& levs):MEDMeshMultiLev(m)
{
if(!m)
throw INTERP_KERNEL::Exception("MEDUMeshMultiLev constructor : null input pointer !");
v.insert(v.end(),vTmp.begin(),vTmp.end());
}
std::size_t sz(v.size());
+ if(v.empty())
+ {
+ _coords=m->getCoords(); _coords->incrRef();
+ }
_parts.resize(sz);
_pfls.resize(sz);
_geo_types.resize(sz);
+ _nb_entities.resize(sz);
for(std::size_t i=0;i<sz;i++)
{
MEDCoupling1GTUMesh *obj(v[i]);
throw INTERP_KERNEL::Exception("MEDUMeshMultiLev constructor : presence of a null pointer !");
_parts[i]=obj;
_geo_types[i]=obj->getCellModelEnum();
+ _nb_entities[i]=obj->getNumberOfCells();
+ }
+ // ids fields management
+ bool cellFamIdsNoCpy(levs.size()==1);
+ if(cellFamIdsNoCpy)
+ {
+ const DataArrayIdType *tmp(m->getFamilyFieldAtLevel(levs[0]));
+ if(tmp)
+ {
+ tmp->incrRef();
+ _cell_fam_ids=(const_cast<DataArrayIdType *>(tmp));
+ }
+ }
+ else
+ {
+ std::vector<const DataArrayIdType *> tmps(levs.size());
+ bool f(true);
+ for(std::size_t i=0;i<levs.size();i++)
+ {
+ tmps[i]=m->getFamilyFieldAtLevel(levs[i]);
+ if(!tmps[i])
+ f=false;
+ }
+ if(f && !tmps.empty())
+ _cell_fam_ids=DataArrayIdType::Aggregate(tmps);
+ }
+ bool cellNumIdsNoCpy(levs.size()==1);
+ if(cellNumIdsNoCpy)
+ {
+ const DataArrayIdType *tmp(m->getNumberFieldAtLevel(levs[0]));
+ if(tmp)
+ {
+ tmp->incrRef();
+ _cell_num_ids=(const_cast<DataArrayIdType *>(tmp));
+ }
}
+ else
+ {
+ std::vector<const DataArrayIdType *> tmps(levs.size());
+ bool n(true);
+ for(std::size_t i=0;i<levs.size();i++)
+ {
+ tmps[i]=m->getNumberFieldAtLevel(levs[i]);
+ if(!tmps[i])
+ n=false;
+ }
+ if(n && !tmps.empty())
+ _cell_num_ids=DataArrayIdType::Aggregate(tmps);
+ }
+ // node part
+ {
+ const DataArrayIdType *tmp(m->getFamilyFieldAtLevel(1));
+ if(tmp)
+ {
+ tmp->incrRef();
+ _node_fam_ids=(const_cast<DataArrayIdType *>(tmp));
+ }
+ }
+ {
+ const DataArrayIdType *tmp(m->getNumberFieldAtLevel(1));
+ if(tmp)
+ {
+ tmp->incrRef();
+ _node_num_ids=(const_cast<DataArrayIdType *>(tmp));
+ }
+ }
}
-MEDUMeshMultiLev *MEDUMeshMultiLev::New(const MEDFileUMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities)
+MEDUMeshMultiLev *MEDUMeshMultiLev::New(const MEDFileUMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities)
{
return new MEDUMeshMultiLev(m,gts,pfls,nbEntities);
}
-MEDUMeshMultiLev::MEDUMeshMultiLev(const MEDFileUMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities):MEDMeshMultiLev(m->getNumberOfNodes(),gts,pfls,nbEntities)
+MEDUMeshMultiLev::MEDUMeshMultiLev(const MEDFileUMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities):MEDMeshMultiLev(m,m->getNumberOfNodes(),gts,pfls,nbEntities)
{
std::size_t sz(gts.size());
+ if(sz<1)
+ throw INTERP_KERNEL::Exception("constructor of MEDUMeshMultiLev : number of different geo type must be >= 1 !");
+ unsigned dim(INTERP_KERNEL::CellModel::GetCellModel(gts[0]).getDimension());
_parts.resize(sz);
+ bool isSameDim(true),isNoPfl(true);
for(std::size_t i=0;i<sz;i++)
{
MEDCoupling1GTUMesh *elt(m->getDirectUndergroundSingleGeoTypeMesh(gts[i]));
+ if(INTERP_KERNEL::CellModel::GetCellModel(gts[i]).getDimension()!=dim)
+ isSameDim=false;
+ if(pfls[i])
+ isNoPfl=false;
if(elt)
elt->incrRef();
_parts[i]=elt;
}
+ // ids fields management
+ int lev((int)dim-m->getMeshDimension());
+ if(isSameDim && isNoPfl && m->getGeoTypesAtLevel(lev)==gts)//optimized part
+ {
+ const DataArrayIdType *famIds(m->getFamilyFieldAtLevel(lev));
+ if(famIds)
+ { _cell_fam_ids=const_cast<DataArrayIdType*>(famIds); famIds->incrRef(); }
+ const DataArrayIdType *numIds(m->getNumberFieldAtLevel(lev));
+ if(numIds)
+ { _cell_num_ids=const_cast<DataArrayIdType*>(numIds); numIds->incrRef(); }
+ famIds=m->getFamilyFieldAtLevel(1);
+ if(famIds)
+ { _node_fam_ids=const_cast<DataArrayIdType*>(famIds); famIds->incrRef(); }
+ numIds=m->getNumberFieldAtLevel(1);
+ if(numIds)
+ { _node_num_ids=const_cast<DataArrayIdType*>(numIds); numIds->incrRef(); }
+ return ;
+ }
+ //
+ std::vector< MCAuto<DataArrayIdType> > famIdsSafe(sz);
+ std::vector<const DataArrayIdType *> famIds(sz);
+ bool f(true);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ famIdsSafe[i]=m->extractFamilyFieldOnGeoType(gts[i]);
+ famIds[i]=famIdsSafe[i];
+ if(!famIds[i])
+ f=false;
+ }
+ if(f)
+ _cell_fam_ids=DataArrayIdType::Aggregate(famIds);
+ std::vector< MCAuto<DataArrayIdType> > numIdsSafe(sz);
+ std::vector<const DataArrayIdType *> numIds(sz);
+ bool n(true);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ numIdsSafe[i]=m->extractNumberFieldOnGeoType(gts[i]);
+ numIds[i]=numIdsSafe[i];
+ if(!numIds[i])
+ n=false;
+ }
+ if(n)
+ _cell_num_ids=DataArrayIdType::Aggregate(numIds);
+ // node ids management
+ const DataArrayIdType *nodeFamIds(m->getFamilyFieldAtLevel(1));
+ if(nodeFamIds)
+ { _node_fam_ids=const_cast<DataArrayIdType*>(nodeFamIds); nodeFamIds->incrRef(); }
+ const DataArrayIdType *nodeNumIds(m->getNumberFieldAtLevel(1));
+ if(nodeNumIds)
+ { _node_num_ids=const_cast<DataArrayIdType*>(nodeNumIds); nodeNumIds->incrRef(); }
}
-void MEDUMeshMultiLev::selectPartOfNodes(const DataArrayInt *pflNodes)
-{
- if(!pflNodes || !pflNodes->isAllocated())
- return ;
- std::size_t sz(_parts.size());
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > a(sz);
- std::vector< const DataArrayInt *> aa(sz);
- for(std::size_t i=0;i<sz;i++)
- {
-
- const DataArrayInt *pfl(_pfls[i]);
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> m(_parts[i]);
- if(pfl)
- m=dynamic_cast<MEDCoupling1GTUMesh *>(_parts[i]->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end()));
- DataArrayInt *cellIds=0;
- m->fillCellIdsToKeepFromNodeIds(pflNodes->begin(),pflNodes->end(),true,cellIds);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellIdsSafe(cellIds);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingPointSet> m2(m->buildPartOfMySelfKeepCoords(cellIds->begin(),cellIds->end()));
- int tmp=-1;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2n(m2->getNodeIdsInUse(tmp));
- a[i]=o2n->invertArrayO2N2N2O(tmp); aa[i]=a[i];
- if(pfl)
- _pfls[i]=pfl->selectByTupleIdSafe(cellIds->begin(),cellIds->end());
- else
- _pfls[i]=cellIdsSafe;
- }
- _node_reduction=DataArrayInt::Aggregate(aa);
- _node_reduction->sort(true);
- _node_reduction=_node_reduction->buildUnique();
+void MEDUMeshMultiLev::selectPartOfNodes(const DataArrayIdType *pflNodes)
+{
+ if(!pflNodes || !pflNodes->isAllocated())
+ return ;
+ std::size_t sz(_parts.size());
+ std::vector< MCAuto<DataArrayIdType> > a(sz);
+ std::vector< const DataArrayIdType *> aa(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const DataArrayIdType *pfl(_pfls[i]);
+ MCAuto<MEDCoupling1GTUMesh> m(_parts[i]);
+ if(pfl)
+ m=dynamic_cast<MEDCoupling1GTUMesh *>(_parts[i]->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end()));
+ DataArrayIdType *cellIds=0;
+ m->fillCellIdsToKeepFromNodeIds(pflNodes->begin(),pflNodes->end(),true,cellIds);
+ MCAuto<DataArrayIdType> cellIdsSafe(cellIds);
+ MCAuto<MEDCouplingPointSet> m2(m->buildPartOfMySelfKeepCoords(cellIds->begin(),cellIds->end()));
+ mcIdType tmp=-1;
+ MCAuto<DataArrayIdType> o2n(m2->getNodeIdsInUse(tmp));
+ a[i]=o2n->invertArrayO2N2N2O(tmp); aa[i]=a[i];
+ if(pfl)
+ _pfls[i]=pfl->selectByTupleIdSafe(cellIds->begin(),cellIds->end());
+ else
+ _pfls[i]=cellIdsSafe;
+ }
+ if(!aa.empty())
+ _node_reduction=DataArrayIdType::Aggregate(aa);//general case
+ else
+ _node_reduction=pflNodes->deepCopy();//case where no cells in read mesh.
+ _node_reduction->sort(true);
+ _node_reduction=_node_reduction->buildUnique();
+ if(_node_reduction->getNumberOfTuples()==pflNodes->getNumberOfTuples())
+ return ;//This is the classical case where the input node profile corresponds perfectly to a subset of cells in _parts
+ if(_node_reduction->getNumberOfTuples()>pflNodes->getNumberOfTuples())
+ throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::selectPartOfNodes : internal error in MEDCoupling during cell select from a list of nodes !");
+ // Here the cells available in _parts is not enough to cover all the nodes in pflNodes. So adding vertices cells in _parts...
+ MCAuto<DataArrayIdType> pflNodes2(pflNodes->deepCopy());
+ pflNodes2->sort(true);
+ MCAuto<DataArrayIdType> diff(pflNodes2->buildSubstractionOptimized(_node_reduction));
+ appendVertices(diff,pflNodes2);
}
MEDMeshMultiLev *MEDUMeshMultiLev::prepare() const
return new MEDUMeshMultiLev(*this);
}
-MEDUMeshMultiLev::MEDUMeshMultiLev(const MEDUMeshMultiLev& other):MEDMeshMultiLev(other),_parts(other._parts)
+MEDUMeshMultiLev::MEDUMeshMultiLev(const MEDUMeshMultiLev& other):MEDMeshMultiLev(other),_parts(other._parts),_coords(other._coords)
{
}
-MEDUMeshMultiLev::MEDUMeshMultiLev(const MEDStructuredMeshMultiLev& other, const MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh>& part):MEDMeshMultiLev(other)
+MEDUMeshMultiLev::MEDUMeshMultiLev(const MEDStructuredMeshMultiLev& other, const MCAuto<MEDCoupling1GTUMesh>& part):MEDMeshMultiLev(other)
{
_parts.resize(1);
_parts[0]=part;
_pfls.resize(1); _pfls[0]=0;
}
-void MEDUMeshMultiLev::buildVTUArrays(DataArrayDouble *& coords, DataArrayByte *&types, DataArrayInt *&cellLocations, DataArrayInt *& cells, DataArrayInt *&faceLocations, DataArrayInt *&faces) const
+/*!
+ * To be called only once ! Because due to some optimizations (sometimes aggressive) the internal state can be changed...
+ * If returned value is false output pointer \a coords is not the internal pointer. If returned value is true output pointer \a coords is directly the internal pointer.
+ * If true is returned, the \a coords output parameter should be used with care (non const method call) to avoid to change the internal state of MEDFileUMesh instance.
+ */
+bool MEDUMeshMultiLev::buildVTUArrays(DataArrayDouble *& coords, DataArrayByte *&types, DataArrayIdType *&cellLocations, DataArrayIdType *& cells, DataArrayIdType *&faceLocations, DataArrayIdType *&faces) const
{
+ const DataArrayDouble *tmp(0);
if(_parts.empty())
- throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::getVTUArrays : empty array !");
- if(!(const MEDCoupling1GTUMesh *)_parts[0])
- throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::getVTUArrays : first part is null !");
- const DataArrayDouble *tmp(_parts[0]->getCoords());
+ tmp=_coords;
+ else
+ tmp=_parts[0]->getCoords();
if(!tmp)
throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::getVTUArrays : the coordinates are null !");
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> a(const_cast<DataArrayDouble *>(tmp)); tmp->incrRef();
- int szBCE(0),szD(0),szF(0);
+ MCAuto<DataArrayDouble> a(const_cast<DataArrayDouble *>(tmp)); tmp->incrRef();
+ mcIdType szBCE(0),szD(0),szF(0);
bool isPolyh(false);
int iii(0);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_parts.begin();it!=_parts.end();it++,iii++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_parts.begin();it!=_parts.end();it++,iii++)
{
const MEDCoupling1GTUMesh *cur(*it);
if(!cur)
throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::getVTUArrays : a part is null !");
//
- const DataArrayInt *pfl(_pfls[iii]);
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> cur2;
+ const DataArrayIdType *pfl(_pfls[iii]);
+ MCAuto<MEDCoupling1GTUMesh> cur2;
if(!pfl)
{ cur2=const_cast<MEDCoupling1GTUMesh *>(cur); cur2->incrRef(); }
else
{ cur2=dynamic_cast<MEDCoupling1GTUMesh *>(cur->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end())); cur=cur2; }
//
- int curNbCells(cur->getNumberOfCells());
+ mcIdType curNbCells(cur->getNumberOfCells());
szBCE+=curNbCells;
if((*it)->getCellModelEnum()!=INTERP_KERNEL::NORM_POLYHED)
szD+=cur->getNodalConnectivity()->getNumberOfTuples()+curNbCells;
else
{
isPolyh=true;
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp2(cur->computeEffectiveNbOfNodesPerCell());
- szD+=tmp2->accumulate(0)+curNbCells;
+ MCAuto<DataArrayIdType> tmp2(cur->computeEffectiveNbOfNodesPerCell());
+ szD+=tmp2->accumulate((std::size_t)0)+curNbCells;
szF+=2*curNbCells+cur->getNodalConnectivity()->getNumberOfTuples();
}
}
- MEDCouplingAutoRefCountObjectPtr<DataArrayByte> b(DataArrayByte::New()); b->alloc(szBCE,1); char *bPtr(b->getPointer());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c(DataArrayInt::New()); c->alloc(szBCE,1); int *cPtr(c->getPointer());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> d(DataArrayInt::New()); d->alloc(szD,1); int *dPtr(d->getPointer());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> e(DataArrayInt::New()),f(DataArrayInt::New()); int *ePtr(0),*fPtr(0);
+ MCAuto<DataArrayByte> b(DataArrayByte::New()); b->alloc(szBCE,1); char *bPtr(b->getPointer());
+ MCAuto<DataArrayIdType> c(DataArrayIdType::New()); c->alloc(szBCE,1); mcIdType *cPtr(c->getPointer());
+ MCAuto<DataArrayIdType> d(DataArrayIdType::New()); d->alloc(szD,1); mcIdType *dPtr(d->getPointer());
+ MCAuto<DataArrayIdType> e(DataArrayIdType::New()),f(DataArrayIdType::New()); mcIdType *ePtr(0),*fPtr(0);
if(isPolyh)
{ e->alloc(szBCE,1); ePtr=e->getPointer(); f->alloc(szF,1); fPtr=f->getPointer(); }
- int k(0);
+ mcIdType k(0);
iii=0;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_parts.begin();it!=_parts.end();it++,iii++)
+ for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_parts.begin();it!=_parts.end();it++,iii++)
{
const MEDCoupling1GTUMesh *cur(*it);
//
- const DataArrayInt *pfl(_pfls[iii]);
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> cur2;
+ const DataArrayIdType *pfl(_pfls[iii]);
+ MCAuto<MEDCoupling1GTUMesh> cur2;
if(!pfl)
{ cur2=const_cast<MEDCoupling1GTUMesh *>(cur); cur2->incrRef(); }
else
{ cur2=dynamic_cast<MEDCoupling1GTUMesh *>(cur->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end())); cur=cur2; }
//
- int curNbCells(cur->getNumberOfCells());
+ mcIdType curNbCells(cur->getNumberOfCells());
int gt((int)cur->getCellModelEnum());
if(gt<0 || gt>=PARAMEDMEM_2_VTKTYPE_LGTH)
throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::getVTUArrays : invalid geometric type !");
std::fill(bPtr,bPtr+curNbCells,gtvtk); bPtr+=curNbCells;
const MEDCoupling1SGTUMesh *scur(dynamic_cast<const MEDCoupling1SGTUMesh *>(cur));
const MEDCoupling1DGTUMesh *dcur(dynamic_cast<const MEDCoupling1DGTUMesh *>(cur));
- const int *connPtr(cur->getNodalConnectivity()->begin());
+ const mcIdType *connPtr(cur->getNodalConnectivity()->begin());
if(!scur && !dcur)
throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::getVTUArrays : internal error !");
if(scur)
{
- int nnpc(scur->getNumberOfNodesPerCell());
- for(int i=0;i<curNbCells;i++,connPtr+=nnpc)
+ if(cur->getCellModelEnum()!=INTERP_KERNEL::NORM_HEXA27)
+ {
+ mcIdType nnpc(scur->getNumberOfNodesPerCell());
+ for(mcIdType i=0;i<curNbCells;i++,connPtr+=nnpc)
+ {
+ *dPtr++=nnpc;
+ dPtr=std::copy(connPtr,connPtr+nnpc,dPtr);
+ *cPtr++=k; k+=nnpc+1;
+ }
+ }
+ else
{
- *dPtr++=nnpc;
- dPtr=std::copy(connPtr,connPtr+nnpc,dPtr);
- *cPtr=k+nnpc; k=*cPtr++;
+ for(mcIdType i=0;i<curNbCells;i++,connPtr+=27)
+ {
+ *dPtr++=27;
+ for(int j=0;j<27;j++,dPtr++)
+ *dPtr=connPtr[HEXA27_PERM_ARRAY[j]];
+ *cPtr++=k; k+=28;
+ }
}
if(isPolyh)
{ std::fill(ePtr,ePtr+curNbCells,-1); ePtr+=curNbCells; }
}
else
{
- const int *connIPtr(dcur->getNodalConnectivityIndex()->begin());
+ const mcIdType *connIPtr(dcur->getNodalConnectivityIndex()->begin());
if(cur->getCellModelEnum()!=INTERP_KERNEL::NORM_POLYHED)
{
for(int i=0;i<curNbCells;i++,connIPtr++)
{
*dPtr++=connIPtr[1]-connIPtr[0];
dPtr=std::copy(connPtr+connIPtr[0],connPtr+connIPtr[1],dPtr);
- *cPtr=k+connIPtr[1]-connIPtr[0]; k=*cPtr++;
+ *cPtr++=k; k+=connIPtr[1]-connIPtr[0]+1;
}
}
else
{
- for(int i=0;i<curNbCells;i++,connIPtr++)
+ for(mcIdType i=0;i<curNbCells;i++,connIPtr++)
{
- std::set<int> s(connPtr+connIPtr[0],connPtr+connIPtr[1]); s.erase(-1);
- *dPtr++=(int)s.size();
+ std::set<mcIdType> s(connPtr+connIPtr[0],connPtr+connIPtr[1]); s.erase(-1);
+ *dPtr++=(mcIdType)s.size();
dPtr=std::copy(s.begin(),s.end(),dPtr);
- *cPtr=k+(int)s.size(); k=*cPtr++;
+ *cPtr++=k; k+=(mcIdType)s.size()+1;
}
}
if(isPolyh)
{ std::fill(ePtr,ePtr+curNbCells,-1); ePtr+=curNbCells; }
else
{
- int kk(0);
+ mcIdType kk(0);
for(int i=0;i<curNbCells;i++,connIPtr++)
{
- int nbFace(std::count(connPtr+connIPtr[0],connPtr+connIPtr[1],-1)+1);
+ mcIdType nbFace(ToIdType(std::count(connPtr+connIPtr[0],connPtr+connIPtr[1],-1)+1));
*fPtr++=nbFace;
- const int *work(connPtr+connIPtr[0]);
+ const mcIdType *work(connPtr+connIPtr[0]);
for(int j=0;j<nbFace;j++)
{
- const int *work2=std::find(work,connPtr+connIPtr[1],-1);
- *fPtr++=std::distance(work,work2);
+ const mcIdType *work2=std::find(work,connPtr+connIPtr[1],-1);
+ *fPtr++=ToIdType(std::distance(work,work2));
fPtr=std::copy(work,work2,fPtr);
work=work2+1;
}
reorderNodesIfNecessary(a,d,0);
else
reorderNodesIfNecessary(a,d,f);
+ if(a->getNumberOfComponents()!=3)
+ a=a->changeNbOfComponents(3,0.);
coords=a.retn(); types=b.retn(); cellLocations=c.retn(); cells=d.retn();
if(!isPolyh)
{ faceLocations=0; faces=0; }
else
{ faceLocations=e.retn(); faces=f.retn(); }
+ return _mesh->isObjectInTheProgeny(coords);
}
-void MEDUMeshMultiLev::reorderNodesIfNecessary(MEDCouplingAutoRefCountObjectPtr<DataArrayDouble>& coords, DataArrayInt *nodalConnVTK, DataArrayInt *polyhedNodalConnVTK) const
+void MEDUMeshMultiLev::reorderNodesIfNecessary(MCAuto<DataArrayDouble>& coords, DataArrayIdType *nodalConnVTK, DataArrayIdType *polyhedNodalConnVTK) const
{
- const DataArrayInt *nr(_node_reduction);
+ const DataArrayIdType *nr(_node_reduction);
if(!nr)
return ;
- int sz(coords->getNumberOfTuples());
+ if(nodalConnVTK->empty() && !polyhedNodalConnVTK)
+ {
+ coords=(coords->selectByTupleIdSafe(nr->begin(),nr->end()));
+ return ;
+ }
+ mcIdType sz(coords->getNumberOfTuples());
std::vector<bool> b(sz,false);
- const int *work(nodalConnVTK->begin()),*endW(nodalConnVTK->end());
+ const mcIdType *work(nodalConnVTK->begin()),*endW(nodalConnVTK->end());
while(work!=endW)
{
- int nb(*work++);
- for(int i=0;i<nb && work!=endW;i++,work++)
+ mcIdType nb(*work++);
+ for(mcIdType i=0;i<nb && work!=endW;i++,work++)
{
if(*work>=0 && *work<sz)
b[*work]=true;
work=polyhedNodalConnVTK->begin(); endW=polyhedNodalConnVTK->end();
while(work!=endW)
{
- int nb(*work++);
- for(int i=0;i<nb && work!=endW;i++)
+ mcIdType nb(*work++);
+ for(mcIdType i=0;i<nb && work!=endW;i++)
{
- int nb2(*work++);
- for(int j=0;j<nb2 && work!=endW;j++,work++)
+ mcIdType nb2(*work++);
+ for(mcIdType j=0;j<nb2 && work!=endW;j++,work++)
{
if(*work>=0 && *work<sz)
b[*work]=true;
}
}
}
- int szExp(std::count(b.begin(),b.end(),true));
- if(szExp!=nr->getNumberOfTuples())
+ std::size_t szExp(std::count(b.begin(),b.end(),true));
+ if(ToIdType(szExp)!=nr->getNumberOfTuples())
throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::reorderNodesIfNecessary : internal error #3 !");
// Go renumbering !
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2n(DataArrayInt::New()); o2n->alloc(sz,1);
- int *o2nPtr(o2n->getPointer());
+ MCAuto<DataArrayIdType> o2n(DataArrayIdType::New()); o2n->alloc(sz,1);
+ mcIdType *o2nPtr(o2n->getPointer());
int newId(0);
for(int i=0;i<sz;i++,o2nPtr++)
if(b[i]) *o2nPtr=newId++; else *o2nPtr=-1;
- const int *o2nPtrc(o2n->begin());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> n2o(o2n->invertArrayO2N2N2O(nr->getNumberOfTuples()));
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> perm(DataArrayInt::FindPermutationFromFirstToSecond(n2o,nr));
- const int *permPtr(perm->begin());
- int *work2(nodalConnVTK->getPointer()),*endW2(nodalConnVTK->getPointer()+nodalConnVTK->getNumberOfTuples());
+ const mcIdType *o2nPtrc(o2n->begin());
+ MCAuto<DataArrayIdType> n2o(o2n->invertArrayO2N2N2O(nr->getNumberOfTuples()));
+ MCAuto<DataArrayIdType> perm(DataArrayIdType::FindPermutationFromFirstToSecond(n2o,nr));
+ const mcIdType *permPtr(perm->begin());
+ mcIdType *work2(nodalConnVTK->getPointer()),*endW2(nodalConnVTK->getPointer()+nodalConnVTK->getNumberOfTuples());
while(work2!=endW2)
{
- int nb(*work2++);
- for(int i=0;i<nb && work2!=endW2;i++,work2++)
+ mcIdType nb(*work2++);
+ for(mcIdType i=0;i<nb && work2!=endW2;i++,work2++)
*work2=permPtr[o2nPtrc[*work2]];
}
if(polyhedNodalConnVTK)
work2=polyhedNodalConnVTK->getPointer(); endW2=polyhedNodalConnVTK->getPointer()+polyhedNodalConnVTK->getNumberOfTuples();
while(work2!=endW2)
{
- int nb(*work2++);
- for(int i=0;i<nb && work2!=endW2;i++)
+ mcIdType nb(*work2++);
+ for(mcIdType i=0;i<nb && work2!=endW2;i++)
{
- int nb2(*work2++);
- for(int j=0;j<nb2 && work2!=endW2;j++,work2++)
+ mcIdType nb2(*work2++);
+ for(mcIdType j=0;j<nb2 && work2!=endW2;j++,work2++)
*work2=permPtr[o2nPtrc[*work2]];
}
}
coords=(coords->selectByTupleIdSafe(nr->begin(),nr->end()));
}
+
+void MEDUMeshMultiLev::appendVertices(const DataArrayIdType *verticesToAdd, DataArrayIdType *nr)
+{
+ mcIdType nbOfCells(verticesToAdd->getNumberOfTuples());//it is not a bug cells are NORM_POINT1
+ MEDMeshMultiLev::appendVertices(verticesToAdd,nr);
+ MCAuto<MEDCoupling1SGTUMesh> elt(MEDCoupling1SGTUMesh::New("",INTERP_KERNEL::NORM_POINT1));
+ elt->allocateCells(nbOfCells);
+ for(mcIdType i=0;i<nbOfCells;i++)
+ {
+ mcIdType pt(verticesToAdd->getIJ(i,0));
+ elt->insertNextCell(&pt,&pt+1);
+ }
+ if(_parts.empty())
+ throw INTERP_KERNEL::Exception("MEDUMeshMultiLev::appendVertices : parts are empty !");
+ elt->setCoords(_parts[0]->getCoords());
+ MCAuto<MEDCoupling1GTUMesh> elt2((MEDCoupling1SGTUMesh *)elt); elt2->incrRef();
+ _parts.push_back(elt2);
+}
+
//=
-MEDStructuredMeshMultiLev::MEDStructuredMeshMultiLev()
+MEDStructuredMeshMultiLev::MEDStructuredMeshMultiLev(const MEDFileStructuredMesh *m, const std::vector<int>& lev):MEDMeshMultiLev(m),_is_internal(true)
+{
+ initStdFieldOfIntegers(m);
+}
+
+MEDStructuredMeshMultiLev::MEDStructuredMeshMultiLev(const MEDFileStructuredMesh *m, mcIdType nbOfNodes, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities):MEDMeshMultiLev(m,nbOfNodes,gts,pfls,nbEntities),_is_internal(true)
+{
+ initStdFieldOfIntegers(m);
+}
+
+MEDStructuredMeshMultiLev::MEDStructuredMeshMultiLev(const MEDStructuredMeshMultiLev& other):MEDMeshMultiLev(other),_is_internal(true),_face_fam_ids(other._face_fam_ids),_face_num_ids(other._face_num_ids)
+{
+}
+
+void MEDStructuredMeshMultiLev::initStdFieldOfIntegers(const MEDFileStructuredMesh *m)
+{
+ // ids fields management
+ const DataArrayIdType *tmp(0);
+ tmp=m->getFamilyFieldAtLevel(0);
+ if(tmp)
+ {
+ tmp->incrRef();
+ _cell_fam_ids=const_cast<DataArrayIdType *>(tmp);
+ }
+ tmp=m->getNumberFieldAtLevel(0);
+ if(tmp)
+ {
+ tmp->incrRef();
+ _cell_num_ids=const_cast<DataArrayIdType *>(tmp);
+ }
+ //
+ tmp=0;
+ tmp=m->getFamilyFieldAtLevel(1);
+ if(tmp)
+ {
+ tmp->incrRef();
+ _node_fam_ids=const_cast<DataArrayIdType *>(tmp);
+ }
+ tmp=m->getNumberFieldAtLevel(1);
+ if(tmp)
+ {
+ tmp->incrRef();
+ _node_num_ids=const_cast<DataArrayIdType *>(tmp);
+ }
+ // faces (if any)
+ tmp=m->getFamilyFieldAtLevel(-1);
+ if(tmp)
+ {
+ tmp->incrRef();
+ _face_fam_ids=const_cast<DataArrayIdType *>(tmp);
+ }
+ tmp=m->getNumberFieldAtLevel(-1);
+ if(tmp)
+ {
+ tmp->incrRef();
+ _face_num_ids=const_cast<DataArrayIdType *>(tmp);
+ }
+}
+
+void MEDStructuredMeshMultiLev::moveFaceToCell() const
{
+ const_cast<MEDStructuredMeshMultiLev *>(this)->_cell_fam_ids=_face_fam_ids; const_cast<MEDStructuredMeshMultiLev *>(this)->_face_fam_ids=0;
+ const_cast<MEDStructuredMeshMultiLev *>(this)->_cell_num_ids=_face_num_ids; const_cast<MEDStructuredMeshMultiLev *>(this)->_face_num_ids=0;
}
-MEDStructuredMeshMultiLev::MEDStructuredMeshMultiLev(int nbOfNodes, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities):MEDMeshMultiLev(nbOfNodes,gts,pfls,nbEntities)
+bool MEDStructuredMeshMultiLev::prepareForImplicitUnstructuredMeshCase(MEDMeshMultiLev *&ret) const
{
+ ret=0;
+ if(_geo_types.empty())
+ return false;
+ if(_geo_types.size()!=1)
+ throw INTERP_KERNEL::Exception("MEDStructuredMeshMultiLev::prepareForImplicitUnstructuredMeshCase only one geo types supported at most supported for the moment !");
+ INTERP_KERNEL::NormalizedCellType gt(MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension(_mesh->getMeshDimension()));
+ if(_geo_types[0]==gt)
+ return false;
+ MEDCoupling1GTUMesh *facesIfPresent((static_cast<const MEDFileStructuredMesh *>(_mesh))->getImplicitFaceMesh());
+ if(!facesIfPresent)
+ return false;
+ const DataArrayIdType *pfl(0),*nr(_node_reduction);
+ if(!_pfls.empty())
+ pfl=_pfls[0];
+ MCAuto<MEDCoupling1GTUMesh> facesIfPresent2(facesIfPresent); facesIfPresent->incrRef();
+ moveFaceToCell();
+ MCAuto<MEDUMeshMultiLev> ret2(new MEDUMeshMultiLev(*this,facesIfPresent2));
+ if(pfl)
+ ret2->setCellReduction(pfl);
+ if(nr)
+ throw INTERP_KERNEL::Exception("MEDStructuredMeshMultiLev::prepareForImplicitUnstructuredMeshCase : case is not treated yet for node reduction on implicit unstructured mesh.");
+ ret=ret2.retn();
+ return true;
}
-void MEDStructuredMeshMultiLev::selectPartOfNodes(const DataArrayInt *pflNodes)
+void MEDStructuredMeshMultiLev::dealWithImplicitUnstructuredMesh(const MEDFileMesh *m)
+{
+ const DataArrayIdType *tmp(0);
+ tmp=m->getFamilyFieldAtLevel(-1);
+ if(tmp)
+ {
+ tmp->incrRef();
+ _cell_fam_ids=const_cast<DataArrayIdType *>(tmp);
+ }
+ tmp=m->getNumberFieldAtLevel(-1);
+ if(tmp)
+ {
+ tmp->incrRef();
+ _cell_num_ids=const_cast<DataArrayIdType *>(tmp);
+ }
+}
+
+void MEDStructuredMeshMultiLev::selectPartOfNodes(const DataArrayIdType *pflNodes)
{
if(!pflNodes || !pflNodes->isAllocated())
return ;
- std::vector<int> ngs(getNodeGridStructure());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> conn(MEDCouplingStructuredMesh::Build1GTNodalConnectivity(&ngs[0],&ngs[0]+ngs.size()));
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1SGTUMesh> m(MEDCoupling1SGTUMesh::New("",MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension(ngs.size())));
+ std::vector<mcIdType> ngs(getNodeGridStructure());
+ MCAuto<DataArrayIdType> conn(MEDCouplingStructuredMesh::Build1GTNodalConnectivity(&ngs[0],&ngs[0]+ngs.size()));
+ MCAuto<MEDCoupling1SGTUMesh> m(MEDCoupling1SGTUMesh::New("",MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension((int)ngs.size())));
m->setNodalConnectivity(conn);
- const DataArrayInt *pfl(_pfls[0]);
+ const DataArrayIdType *pfl(_pfls[0]);
if(pfl)
{
m=dynamic_cast<MEDCoupling1SGTUMesh *>(m->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end()));
}
- DataArrayInt *cellIds=0;
+ DataArrayIdType *cellIds=0;
m->fillCellIdsToKeepFromNodeIds(pflNodes->begin(),pflNodes->end(),true,cellIds);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellIdsSafe(cellIds);
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingPointSet> m2(m->buildPartOfMySelfKeepCoords(cellIds->begin(),cellIds->end()));
- int tmp=-1;
+ MCAuto<DataArrayIdType> cellIdsSafe(cellIds);
+ MCAuto<MEDCouplingPointSet> m2(m->buildPartOfMySelfKeepCoords(cellIds->begin(),cellIds->end()));
+ mcIdType tmp=-1;
_node_reduction=m2->getNodeIdsInUse(tmp);
if(pfl)
_pfls[0]=pfl->selectByTupleIdSafe(cellIds->begin(),cellIds->end());
_pfls[0]=cellIdsSafe;
}
-MEDStructuredMeshMultiLev::MEDStructuredMeshMultiLev(const MEDStructuredMeshMultiLev& other):MEDMeshMultiLev(other)
-{
-}
-
//=
MEDCMeshMultiLev *MEDCMeshMultiLev::New(const MEDFileCMesh *m, const std::vector<int>& levs)
return new MEDCMeshMultiLev(m,levs);
}
-MEDCMeshMultiLev *MEDCMeshMultiLev::New(const MEDFileCMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities)
+MEDCMeshMultiLev *MEDCMeshMultiLev::New(const MEDFileCMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities)
{
return new MEDCMeshMultiLev(m,gts,pfls,nbEntities);
}
-MEDCMeshMultiLev::MEDCMeshMultiLev(const MEDFileCMesh *m, const std::vector<int>& levs)
+MEDCMeshMultiLev::MEDCMeshMultiLev(const MEDFileCMesh *m, const std::vector<int>& levs):MEDStructuredMeshMultiLev(m,levs)
{
if(!m)
throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor : null input pointer !");
if(levs.size()!=1 || levs[0]!=0)
throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor : levels supported is 0 only !");
- int mdim(MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension(m->getMeshDimension()));
- _coords.resize(mdim);
- for(int i=0;i<mdim;i++)
+ int sdim(m->getSpaceDimension());
+ _coords.resize(sdim);
+ for(int i=0;i<sdim;i++)
{
DataArrayDouble *elt(const_cast<DataArrayDouble *>(m->getMesh()->getCoordsAt(i)));
if(!elt)
throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor 2 : presence of null pointer for an vector of double along an axis !");
+ elt->incrRef();
_coords[i]=elt;
}
}
-MEDCMeshMultiLev::MEDCMeshMultiLev(const MEDFileCMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities):MEDStructuredMeshMultiLev(m->getNumberOfNodes(),gts,pfls,nbEntities)
+MEDCMeshMultiLev::MEDCMeshMultiLev(const MEDFileCMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities):MEDStructuredMeshMultiLev(m,m->getNumberOfNodes(),gts,pfls,nbEntities)
{
if(!m)
throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor 2 : null input pointer !");
if(gts.size()!=1 || pfls.size()!=1)
- throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor 2 : lengthes of gts and pfls must be equal to one !");
+ throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor 2 : lengths of gts and pfls must be equal to one !");
int mdim(m->getMeshDimension());
INTERP_KERNEL::NormalizedCellType gt(MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension(mdim));
- if(gt!=gts[0])
- throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor 2 : the unique geo type is invalid regarding meshdim !");
- _coords.resize(mdim);
- for(int i=0;i<mdim;i++)
+ if(gt==gts[0])
{
- DataArrayDouble *elt(const_cast<DataArrayDouble *>(m->getMesh()->getCoordsAt(i)));
- if(!elt)
- throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor 2 : presence of null pointer for an vector of double along an axis !");
- _coords[i]=elt; _coords[i]->incrRef();
+ _coords.resize(mdim);
+ for(int i=0;i<mdim;i++)
+ {
+ DataArrayDouble *elt(const_cast<DataArrayDouble *>(m->getMesh()->getCoordsAt(i)));
+ if(!elt)
+ throw INTERP_KERNEL::Exception("MEDCMeshMultiLev constructor 2 : presence of null pointer for an vector of double along an axis !");
+ _coords[i]=elt; _coords[i]->incrRef();
+ }
}
+ else
+ dealWithImplicitUnstructuredMesh(m);
}
MEDCMeshMultiLev::MEDCMeshMultiLev(const MEDCMeshMultiLev& other):MEDStructuredMeshMultiLev(other),_coords(other._coords)
{
}
-std::vector<int> MEDCMeshMultiLev::getNodeGridStructure() const
+std::vector<mcIdType> MEDCMeshMultiLev::getNodeGridStructure() const
{
- std::vector<int> ret(_coords.size());
+ std::vector<mcIdType> ret(_coords.size());
for(std::size_t i=0;i<_coords.size();i++)
ret[i]=_coords[i]->getNumberOfTuples();
return ret;
MEDMeshMultiLev *MEDCMeshMultiLev::prepare() const
{
- const DataArrayInt *pfl(_pfls[0]),*nr(_node_reduction);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> nnr;
- std::vector<int> cgs,ngs(getNodeGridStructure());
+ MEDMeshMultiLev *retSpecific(0);
+ if(prepareForImplicitUnstructuredMeshCase(retSpecific))
+ return retSpecific;
+ const DataArrayIdType *pfl(0),*nr(_node_reduction);
+ if(!_pfls.empty())
+ pfl=_pfls[0];
+ MCAuto<DataArrayIdType> nnr;
+ std::vector<mcIdType> cgs,ngs(getNodeGridStructure());
cgs.resize(ngs.size());
- std::transform(ngs.begin(),ngs.end(),cgs.begin(),std::bind2nd(std::plus<int>(),-1));
+ std::transform(ngs.begin(),ngs.end(),cgs.begin(),std::bind(std::plus<mcIdType>(),std::placeholders::_1,-1));
if(pfl)
{
- std::vector< std::pair<int,int> > cellParts;
+ std::vector< std::pair<mcIdType,mcIdType> > cellParts;
+ MCAuto<MEDMeshMultiLev> ret2;
if(MEDCouplingStructuredMesh::IsPartStructured(pfl->begin(),pfl->end(),cgs,cellParts))
{
- MEDCouplingAutoRefCountObjectPtr<MEDCMeshMultiLev> ret(new MEDCMeshMultiLev(*this));
+ MCAuto<MEDCMeshMultiLev> ret(new MEDCMeshMultiLev(*this));
+ ret->_is_internal=false;
if(nr)
- { nnr=nr->deepCpy(); nnr->sort(true); ret->setNodeReduction(nnr); }
+ { nnr=nr->deepCopy(); nnr->sort(true); ret->setNodeReduction(nnr); }
ret->_nb_entities[0]=pfl->getNumberOfTuples();
ret->_pfls[0]=0;
- std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> > coords(_coords.size());
+ std::vector< MCAuto<DataArrayDouble> > coords(_coords.size());
for(std::size_t i=0;i<_coords.size();i++)
- coords[i]=_coords[i]->selectByTupleId2(cellParts[i].first,cellParts[i].second+1,1);
+ coords[i]=_coords[i]->selectByTupleIdSafeSlice(cellParts[i].first,cellParts[i].second+1,1);
ret->_coords=coords;
- return ret.retn();
+ ret2=(MEDCMeshMultiLev *)ret; ret2->incrRef();
}
else
{
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingCMesh> m(MEDCouplingCMesh::New());
- for(std::size_t i=0;i<ngs.size();i++)
+ MCAuto<MEDCouplingCMesh> m(MEDCouplingCMesh::New());
+ for(unsigned int i=0;i<ngs.size();i++)
m->setCoordsAt(i,_coords[i]);
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1SGTUMesh> m2(m->build1SGTUnstructured());
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> m3=dynamic_cast<MEDCoupling1GTUMesh *>(m2->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end()));
- MEDCouplingAutoRefCountObjectPtr<MEDUMeshMultiLev> ret(new MEDUMeshMultiLev(*this,m3));
+ MCAuto<MEDCoupling1SGTUMesh> m2(m->build1SGTUnstructured());
+ MCAuto<MEDCoupling1GTUMesh> m3=dynamic_cast<MEDCoupling1GTUMesh *>(m2->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end()));
+ MCAuto<MEDUMeshMultiLev> ret(new MEDUMeshMultiLev(*this,m3));
if(nr)
- { m3->zipCoords(); nnr=nr->deepCpy(); nnr->sort(true); ret->setNodeReduction(nnr); }
- return ret.retn();
+ { m3->zipCoords(); nnr=nr->deepCopy(); nnr->sort(true); ret->setNodeReduction(nnr); }
+ ret2=(MEDUMeshMultiLev *)ret; ret2->incrRef();
+ }
+ const DataArrayIdType *famIds(_cell_fam_ids),*numIds(_cell_num_ids);
+ if(famIds)
+ {
+ MCAuto<DataArrayIdType> tmp(famIds->selectByTupleIdSafe(pfl->begin(),pfl->end()));
+ ret2->setFamilyIdsOnCells(tmp);
+ }
+ if(numIds)
+ {
+ MCAuto<DataArrayIdType> tmp(numIds->selectByTupleIdSafe(pfl->begin(),pfl->end()));
+ ret2->setNumberIdsOnCells(tmp);
}
+ return ret2.retn();
+
}
else
{
- MEDCouplingAutoRefCountObjectPtr<MEDCMeshMultiLev> ret(new MEDCMeshMultiLev(*this));
+ MCAuto<MEDCMeshMultiLev> ret(new MEDCMeshMultiLev(*this));
if(nr)
- { nnr=nr->deepCpy(); nnr->sort(true); ret->setNodeReduction(nnr); }
+ { nnr=nr->deepCopy(); nnr->sort(true); ret->setNodeReduction(nnr); }
return ret.retn();
}
}
-std::vector< DataArrayDouble * > MEDCMeshMultiLev::buildVTUArrays() const
+/*!
+ * \a param [out] isInternal if true the returned pointers are those in main data structure. If false those pointers have been built especially for that method.
+ */
+std::vector< DataArrayDouble * > MEDCMeshMultiLev::buildVTUArrays(bool& isInternal) const
{
+ isInternal=_is_internal;
std::size_t sz(_coords.size());
std::vector< DataArrayDouble * > ret(sz);
for(std::size_t i=0;i<sz;i++)
return new MEDCurveLinearMeshMultiLev(m,levs);
}
-MEDCurveLinearMeshMultiLev *MEDCurveLinearMeshMultiLev::New(const MEDFileCurveLinearMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities)
+MEDCurveLinearMeshMultiLev *MEDCurveLinearMeshMultiLev::New(const MEDFileCurveLinearMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities)
{
return new MEDCurveLinearMeshMultiLev(m,gts,pfls,nbEntities);
}
-MEDCurveLinearMeshMultiLev::MEDCurveLinearMeshMultiLev(const MEDFileCurveLinearMesh *m, const std::vector<int>& levs)
+MEDCurveLinearMeshMultiLev::MEDCurveLinearMeshMultiLev(const MEDFileCurveLinearMesh *m, const std::vector<int>& levs):MEDStructuredMeshMultiLev(m,levs)
{
if(!m)
throw INTERP_KERNEL::Exception("MEDCurveLinearMeshMultiLev constructor : null input pointer !");
_structure=m->getMesh()->getNodeGridStructure();
}
-MEDCurveLinearMeshMultiLev::MEDCurveLinearMeshMultiLev(const MEDFileCurveLinearMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayInt *>& pfls, const std::vector<int>& nbEntities):MEDStructuredMeshMultiLev(m->getNumberOfNodes(),gts,pfls,nbEntities)
+MEDCurveLinearMeshMultiLev::MEDCurveLinearMeshMultiLev(const MEDFileCurveLinearMesh *m, const std::vector<INTERP_KERNEL::NormalizedCellType>& gts, const std::vector<const DataArrayIdType *>& pfls, const std::vector<mcIdType>& nbEntities):MEDStructuredMeshMultiLev(m,m->getNumberOfNodes(),gts,pfls,nbEntities)
{
if(!m)
throw INTERP_KERNEL::Exception("MEDCurveLinearMeshMultiLev constructor 2 : null input pointer !");
if(gts.size()!=1 || pfls.size()!=1)
- throw INTERP_KERNEL::Exception("MEDCurveLinearMeshMultiLev constructor 2 : lengthes of gts and pfls must be equal to one !");
- int mdim(MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension(m->getMeshDimension()));
- if(mdim!=gts[0])
- throw INTERP_KERNEL::Exception("MEDCurveLinearMeshMultiLev constructor 2 : the unique geo type is invalid regarding meshdim !");
- DataArrayDouble *coords(const_cast<DataArrayDouble *>(m->getMesh()->getCoords()));
- if(!coords)
- throw INTERP_KERNEL::Exception("MEDCurveLinearMeshMultiLev constructor 2 : no coords set !");
- coords->incrRef();
- _coords=coords;
- _structure=m->getMesh()->getNodeGridStructure();
+ throw INTERP_KERNEL::Exception("MEDCurveLinearMeshMultiLev constructor 2 : lengths of gts and pfls must be equal to one !");
+ INTERP_KERNEL::NormalizedCellType gt(MEDCouplingStructuredMesh::GetGeoTypeGivenMeshDimension(m->getMeshDimension()));
+ if(gt==gts[0])
+ {
+ DataArrayDouble *coords(const_cast<DataArrayDouble *>(m->getMesh()->getCoords()));
+ if(!coords)
+ throw INTERP_KERNEL::Exception("MEDCurveLinearMeshMultiLev constructor 2 : no coords set !");
+ coords->incrRef();
+ _coords=coords;
+ _structure=m->getMesh()->getNodeGridStructure();
+ }
+ else
+ dealWithImplicitUnstructuredMesh(m);
}
MEDCurveLinearMeshMultiLev::MEDCurveLinearMeshMultiLev(const MEDCurveLinearMeshMultiLev& other):MEDStructuredMeshMultiLev(other),_coords(other._coords),_structure(other._structure)
{
}
-std::vector<int> MEDCurveLinearMeshMultiLev::getNodeGridStructure() const
+std::vector<mcIdType> MEDCurveLinearMeshMultiLev::getNodeGridStructure() const
{
return _structure;
}
MEDMeshMultiLev *MEDCurveLinearMeshMultiLev::prepare() const
{
- const DataArrayInt *pfl(_pfls[0]),*nr(_node_reduction);
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> nnr;
- std::vector<int> cgs,ngs(getNodeGridStructure());
+ MEDMeshMultiLev *retSpecific(0);
+ if(prepareForImplicitUnstructuredMeshCase(retSpecific))
+ return retSpecific;
+ const DataArrayIdType *pfl(0),*nr(_node_reduction);
+ if(!_pfls.empty())
+ pfl=_pfls[0];
+ MCAuto<DataArrayIdType> nnr;
+ std::vector<mcIdType> cgs,ngs(getNodeGridStructure());
cgs.resize(ngs.size());
- std::transform(ngs.begin(),ngs.end(),cgs.begin(),std::bind2nd(std::plus<int>(),-1));
+ std::transform(ngs.begin(),ngs.end(),cgs.begin(),std::bind(std::plus<mcIdType>(),std::placeholders::_1,-1));
if(pfl)
{
- std::vector< std::pair<int,int> > cellParts,nodeParts;
+ std::vector< std::pair<mcIdType,mcIdType> > cellParts,nodeParts;
+ MCAuto<MEDMeshMultiLev> ret2;
if(MEDCouplingStructuredMesh::IsPartStructured(pfl->begin(),pfl->end(),cgs,cellParts))
{
nodeParts=cellParts;
- std::vector<int> st(ngs.size());
+ std::vector<mcIdType> st(ngs.size());
for(std::size_t i=0;i<ngs.size();i++)
{
nodeParts[i].second++;
st[i]=nodeParts[i].second-nodeParts[i].first;
}
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> p(MEDCouplingStructuredMesh::BuildExplicitIdsFrom(ngs,nodeParts));
- MEDCouplingAutoRefCountObjectPtr<MEDCurveLinearMeshMultiLev> ret(new MEDCurveLinearMeshMultiLev(*this));
+ MCAuto<DataArrayIdType> p(MEDCouplingStructuredMesh::BuildExplicitIdsFrom(ngs,nodeParts));
+ MCAuto<MEDCurveLinearMeshMultiLev> ret(new MEDCurveLinearMeshMultiLev(*this));
+ ret->_is_internal=false;
if(nr)
- { nnr=nr->deepCpy(); nnr->sort(true); ret->setNodeReduction(nnr); }
+ { nnr=nr->deepCopy(); nnr->sort(true); ret->setNodeReduction(nnr); }
ret->_nb_entities[0]=pfl->getNumberOfTuples();
ret->_pfls[0]=0;
ret->_coords=_coords->selectByTupleIdSafe(p->begin(),p->end());
ret->_structure=st;
- return ret.retn();
+ ret2=(MEDCurveLinearMeshMultiLev *)ret; ret2->incrRef();
}
else
{
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingCurveLinearMesh> m(MEDCouplingCurveLinearMesh::New());
+ MCAuto<MEDCouplingCurveLinearMesh> m(MEDCouplingCurveLinearMesh::New());
m->setCoords(_coords); m->setNodeGridStructure(&_structure[0],&_structure[0]+_structure.size());
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1SGTUMesh> m2(m->build1SGTUnstructured());
- MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> m3=dynamic_cast<MEDCoupling1GTUMesh *>(m2->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end()));
- MEDCouplingAutoRefCountObjectPtr<MEDUMeshMultiLev> ret(new MEDUMeshMultiLev(*this,m3));
+ MCAuto<MEDCoupling1SGTUMesh> m2(m->build1SGTUnstructured());
+ MCAuto<MEDCoupling1GTUMesh> m3=dynamic_cast<MEDCoupling1GTUMesh *>(m2->buildPartOfMySelfKeepCoords(pfl->begin(),pfl->end()));
+ MCAuto<MEDUMeshMultiLev> ret(new MEDUMeshMultiLev(*this,m3));
if(nr)
- { m3->zipCoords(); nnr=nr->deepCpy(); nnr->sort(true); ret->setNodeReduction(nnr); }
- return ret.retn();
+ { m3->zipCoords(); nnr=nr->deepCopy(); nnr->sort(true); ret->setNodeReduction(nnr); }
+ ret2=(MEDUMeshMultiLev *)ret; ret2->incrRef();
}
+ const DataArrayIdType *famIds(_cell_fam_ids),*numIds(_cell_num_ids);
+ if(famIds)
+ {
+ MCAuto<DataArrayIdType> tmp(famIds->selectByTupleIdSafe(pfl->begin(),pfl->end()));
+ ret2->setFamilyIdsOnCells(tmp);
+ }
+ if(numIds)
+ {
+ MCAuto<DataArrayIdType> tmp(numIds->selectByTupleIdSafe(pfl->begin(),pfl->end()));
+ ret2->setNumberIdsOnCells(tmp);
+ }
+ return ret2.retn();
}
else
{
- MEDCouplingAutoRefCountObjectPtr<MEDCurveLinearMeshMultiLev> ret(new MEDCurveLinearMeshMultiLev(*this));
+ MCAuto<MEDCurveLinearMeshMultiLev> ret(new MEDCurveLinearMeshMultiLev(*this));
if(nr)
- { nnr=nr->deepCpy(); nnr->sort(true); ret->setNodeReduction(nnr); }
+ { nnr=nr->deepCopy(); nnr->sort(true); ret->setNodeReduction(nnr); }
return ret.retn();
}
}
-void MEDCurveLinearMeshMultiLev::buildVTUArrays(DataArrayDouble *&coords, std::vector<int>& nodeStrct) const
+void MEDCurveLinearMeshMultiLev::buildVTUArrays(DataArrayDouble *&coords, std::vector<mcIdType>& nodeStrct, bool& isInternal) const
{
+ isInternal=_is_internal;
nodeStrct=_structure;
const DataArrayDouble *coo(_coords);
if(!coo)
{
}
-MEDFileField1TSStructItem2::MEDFileField1TSStructItem2(INTERP_KERNEL::NormalizedCellType a, const std::pair<int,int>& b, const std::string& c, const std::string& d):_geo_type(a),_start_end(b),_pfl(DataArrayInt::New()),_loc(d),_nb_of_entity(-1)
+MEDFileField1TSStructItem2::MEDFileField1TSStructItem2(INTERP_KERNEL::NormalizedCellType a, const std::pair<mcIdType,mcIdType>& b, const std::string& c, const std::string& d):_geo_type(a),_start_end(b),_pfl(DataArrayIdType::New()),_loc(d),_nb_of_entity(-1)
{
_pfl->setName(c.c_str());
}
void MEDFileField1TSStructItem2::checkWithMeshStructForCells(const MEDFileMeshStruct *mst, const MEDFileFieldGlobsReal *globs)
{
- int nbOfEnt=mst->getNumberOfElemsOfGeoType(_geo_type);
+ if(!mst->doesManageGeoType(_geo_type))
+ {
+ MEDFileMeshStruct *mstUnConstCasted(const_cast<MEDFileMeshStruct *>(mst));
+ mstUnConstCasted->appendIfImplicitType(_geo_type);
+ }
+ mcIdType nbOfEnt=mst->getNumberOfElemsOfGeoType(_geo_type);
checkInRange(nbOfEnt,1,globs);
}
void MEDFileField1TSStructItem2::checkWithMeshStructForGaussNE(const MEDFileMeshStruct *mst, const MEDFileFieldGlobsReal *globs)
{
- int nbOfEnt=mst->getNumberOfElemsOfGeoType(_geo_type);
+ mcIdType nbOfEnt=mst->getNumberOfElemsOfGeoType(_geo_type);
const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(_geo_type);
checkInRange(nbOfEnt,(int)cm.getNumberOfNodes(),globs);
}
if(_loc.empty())
throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem2::checkWithMeshStructForGaussPT : no localization specified !");
const MEDFileFieldLoc& loc=globs->getLocalization(_loc.c_str());
- int nbOfEnt=mst->getNumberOfElemsOfGeoType(_geo_type);
+ mcIdType nbOfEnt=mst->getNumberOfElemsOfGeoType(_geo_type);
checkInRange(nbOfEnt,loc.getNumberOfGaussPoints(),globs);
}
if(_loc.empty())
{
if(getPflName().empty())
- return (_start_end.second-_start_end.first)/_nb_of_entity;
+ return (int)((_start_end.second-_start_end.first)/_nb_of_entity);
else
- return (_start_end.second-_start_end.first)/getPfl(globs)->getNumberOfTuples();
+ return (int)((_start_end.second-_start_end.first)/getPfl(globs)->getNumberOfTuples());
}
else
{
return _pfl->getName();
}
-const DataArrayInt *MEDFileField1TSStructItem2::getPfl(const MEDFileFieldGlobsReal *globs) const
+const DataArrayIdType *MEDFileField1TSStructItem2::getPfl(const MEDFileFieldGlobsReal *globs) const
{
if(!_pfl->isAllocated())
{
}
/*!
- * \param [in] nbOfEntity - number of entity that can be either cells or nodes. Not other possiblity.
+ * \param [in] nbOfEntity - number of entity that can be either cells or nodes. Not other possibility.
* \param [in] nip - number of integration points. 1 for ON_CELLS and NO_NODES
*/
-void MEDFileField1TSStructItem2::checkInRange(int nbOfEntity, int nip, const MEDFileFieldGlobsReal *globs)
+void MEDFileField1TSStructItem2::checkInRange(mcIdType nbOfEntity, int nip, const MEDFileFieldGlobsReal *globs)
{
_nb_of_entity=nbOfEntity;
if(_pfl->getName().empty())
{
if(nbOfEntity!=(_start_end.second-_start_end.first)/nip)
- throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem2::checkInRange : Mismatch between number of entities and size of node field !");
+ throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem2::checkInRange : Mismatch between number of entities and size of field !");
return ;
}
else
{
if(!globs)
throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem2::checkInRange : Presence of a profile on field whereas no globals found in file !");
- const DataArrayInt *pfl=globs->getProfile(_pfl->getName().c_str());
+ const DataArrayIdType *pfl=globs->getProfile(_pfl->getName().c_str());
if(!pfl)
throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem2::checkInRange : Presence of a profile on field whereas no such profile found in file !");
pfl->checkAllIdsInRange(0,nbOfEntity);
}
}
-bool MEDFileField1TSStructItem2::isFastlyEqual(int& startExp, INTERP_KERNEL::NormalizedCellType gt, const char *pflName) const
+bool MEDFileField1TSStructItem2::isFastlyEqual(mcIdType& startExp, INTERP_KERNEL::NormalizedCellType gt, const std::string& pflName) const
{
if(startExp!=_start_end.first)
return false;
return true;
}
-bool MEDFileField1TSStructItem2::operator==(const MEDFileField1TSStructItem2& other) const throw(INTERP_KERNEL::Exception)
+bool MEDFileField1TSStructItem2::operator==(const MEDFileField1TSStructItem2& other) const
{
//_nb_of_entity is not taken into account here. It is not a bug, because no mesh consideration needed here to perform fast compare.
//idem for _loc. It is not an effective attribute for support comparison.
return false;
if(_pfl->getName().empty() && other._pfl->getName().empty())
return true;
- const DataArrayInt *pfl1(getPfl(globs)),*pfl2(other.getPfl(globs));
+ const DataArrayIdType *pfl1(getPfl(globs)),*pfl2(other.getPfl(globs));
return pfl1->isEqualWithoutConsideringStr(*pfl2);
}
if(objs.size()==1)
return MEDFileField1TSStructItem2(*objs[0]);
INTERP_KERNEL::NormalizedCellType gt(objs[0]->_geo_type);
- int nbEntityRef(objs[0]->_nb_of_entity);
+ mcIdType nbEntityRef(objs[0]->_nb_of_entity);
std::size_t sz(objs.size());
- std::vector<const DataArrayInt *> arrs(sz);
+ std::vector<const DataArrayIdType *> arrs(sz);
for(std::size_t i=0;i<sz;i++)
{
const MEDFileField1TSStructItem2 *obj(objs[i]);
throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem2::BuildAggregationOf : invalid situation ! Several same geo type chunk must all lie on profiles !");
arrs[i]=globs->getProfile(obj->_pfl->getName().c_str());
}
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arr(DataArrayInt::Aggregate(arrs));
+ MCAuto<DataArrayIdType> arr(DataArrayIdType::Aggregate(arrs));
arr->sort();
- int oldNbTuples(arr->getNumberOfTuples());
+ mcIdType oldNbTuples(arr->getNumberOfTuples());
arr=arr->buildUnique();
if(oldNbTuples!=arr->getNumberOfTuples())
throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem2::BuildAggregationOf : some entities are present several times !");
- if(arr->isIdentity() && oldNbTuples==nbEntityRef)
+ if(arr->isIota(nbEntityRef))
{
- std::pair<int,int> p(0,nbEntityRef);
+ std::pair<mcIdType,mcIdType> p(0,nbEntityRef);
std::string a,b;
MEDFileField1TSStructItem2 ret(gt,p,a,b);
ret._nb_of_entity=nbEntityRef;
else
{
arr->setName(NEWLY_CREATED_PFL_NAME);
- std::pair<int,int> p(0,oldNbTuples);
+ std::pair<mcIdType,mcIdType> p(0,oldNbTuples);
std::string a,b;
MEDFileField1TSStructItem2 ret(gt,p,a,b);
ret._nb_of_entity=nbEntityRef;
return ret;
}
-std::vector<const BigMemoryObject *> MEDFileField1TSStructItem2::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileField1TSStructItem2::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
- const DataArrayInt *pfl(_pfl);
- if(pfl)
- ret.push_back(pfl);
+ ret.push_back((const DataArrayIdType *)_pfl);
return ret;
}
void MEDFileField1TSStructItem::checkWithMeshStruct(const MEDFileMeshStruct *mst, const MEDFileFieldGlobsReal *globs)
{
switch(_type)
- {
+ {
case ON_NODES:
{
- int nbOfEnt=mst->getNumberOfNodes();
+ mcIdType nbOfEnt=mst->getNumberOfNodes();
if(_items.size()!=1)
throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem::checkWithMeshStruct : for nodes field only one subdivision supported !");
_items[0].checkInRange(nbOfEnt,1,globs);
}
default:
throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem::checkWithMeshStruct : not managed field type !");
- }
+ }
}
-bool MEDFileField1TSStructItem::operator==(const MEDFileField1TSStructItem& other) const throw(INTERP_KERNEL::Exception)
+bool MEDFileField1TSStructItem::operator==(const MEDFileField1TSStructItem& other) const
{
if(_type!=other._type)
return false;
int theFirstLevFull;
bool ret0=isFullyOnOneLev(meshSt,theFirstLevFull);
const MEDFileField1TSStructItem2& otherNodeIt(other._items[0]);
+ mcIdType nbOfNodes(meshSt->getNumberOfNodes());
if(otherNodeIt.getPflName().empty())
{//on all nodes
if(!ret0)
return false;
- return theFirstLevFull==0;
+ std::vector<bool> nodesFetched(nbOfNodes,false);
+ meshSt->getTheMesh()->whichAreNodesFetched(*this,globs,nodesFetched);
+ if(std::find(nodesFetched.begin(),nodesFetched.end(),false)==nodesFetched.end())
+ return theFirstLevFull==0;
+ else
+ return false;
}
else
{
- const DataArrayInt *pfl=globs->getProfile(otherNodeIt.getPflName().c_str());
- MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cpyPfl(pfl->deepCpy());
+ const DataArrayIdType *pfl=globs->getProfile(otherNodeIt.getPflName().c_str());
+ MCAuto<DataArrayIdType> cpyPfl(pfl->deepCopy());
cpyPfl->sort();
- int nbOfNodes(meshSt->getNumberOfNodes());
- if(cpyPfl->isIdentity() && cpyPfl->getNumberOfTuples()==nbOfNodes)
+ if(cpyPfl->isIota(nbOfNodes))
{//on all nodes also !
if(!ret0)
return false;
return false;
}
-const MEDFileField1TSStructItem2& MEDFileField1TSStructItem::operator[](std::size_t i) const throw(INTERP_KERNEL::Exception)
+const MEDFileField1TSStructItem2& MEDFileField1TSStructItem::operator[](std::size_t i) const
{
if(i>=_items.size())
throw INTERP_KERNEL::Exception("MEDFileField1TSStructItem::operator[] : input is not in valid range !");
return ret;
}
-std::vector<const BigMemoryObject *> MEDFileField1TSStructItem::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileField1TSStructItem::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
for(std::vector< MEDFileField1TSStructItem2 >::const_iterator it=_items.begin();it!=_items.end();it++)
{
std::size_t sz(_items.size());
std::vector<INTERP_KERNEL::NormalizedCellType> a0(sz);
- std::vector<const DataArrayInt *> a1(sz);
- std::vector<int> a2(sz);
+ std::vector<const DataArrayIdType *> a1(sz);
+ std::vector<mcIdType> a2(sz);
std::size_t i(0);
for(std::vector< MEDFileField1TSStructItem2 >::const_iterator it=_items.begin();it!=_items.end();it++,i++)
{
return MEDMeshMultiLev::New(mst->getTheMesh(),a0,a1,a2);
}
+std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileField1TSStructItem::getGeoTypes(const MEDFileMesh *m) const
+{
+ std::vector<INTERP_KERNEL::NormalizedCellType> ret;
+ if(_type==ON_NODES)
+ {
+ if(!_items.empty() && _items[0].getPflName().empty())
+ {
+ if(m)
+ return m->getAllGeoTypes();
+ else
+ return ret;
+ }
+ else
+ return ret;
+ }
+ for(std::vector< MEDFileField1TSStructItem2 >::const_iterator it=_items.begin();it!=_items.end();it++)
+ {
+ INTERP_KERNEL::NormalizedCellType elt((*it).getGeo());
+ std::vector<INTERP_KERNEL::NormalizedCellType>::iterator it2(std::find(ret.begin(),ret.end(),elt));
+ if(it2==ret.end())
+ ret.push_back(elt);
+ }
+ return ret;
+}
+
MEDFileField1TSStructItem MEDFileField1TSStructItem::BuildItemFrom(const MEDFileAnyTypeField1TS *ref, const MEDFileMeshStruct *meshSt)
{
- TypeOfField atype;
std::vector< MEDFileField1TSStructItem2 > anItems;
//
std::vector< std::vector<std::string> > pfls,locs;
std::vector< std::vector<TypeOfField> > typesF;
std::vector<INTERP_KERNEL::NormalizedCellType> geoTypes;
- std::vector< std::vector<std::pair<int,int> > > strtEnds=ref->getFieldSplitedByType(0,geoTypes,typesF,pfls,locs);
+ std::vector< std::vector<std::pair<mcIdType,mcIdType> > > strtEnds=ref->getFieldSplitedByType(std::string(),geoTypes,typesF,pfls,locs);
std::size_t nbOfGeoTypes(geoTypes.size());
if(nbOfGeoTypes==0)
throw INTERP_KERNEL::Exception("MEDFileField1TSStruct : not null by empty ref !");
- bool isFirst=true;
+ if(typesF[0].empty())
+ throw INTERP_KERNEL::Exception("MEDFileField1TSStruct : internal error #1 bis !");
+ TypeOfField atype(typesF[0][0]);
for(std::size_t i=0;i<nbOfGeoTypes;i++)
{
std::size_t sz=typesF[i].size();
if(strtEnds[i].size()<1 || sz<1 || pfls[i].size()<1)
throw INTERP_KERNEL::Exception("MEDFileField1TSStruct : internal error #1 !");
//
- if(isFirst)
- atype=typesF[i][0];
- isFirst=false;
- //
for(std::size_t j=0;j<sz;j++)
{
if(atype==typesF[i][j])
}
}
MEDFileField1TSStructItem ret(atype,anItems);
- ret.checkWithMeshStruct(meshSt,ref);
+ try
+ {
+ ret.checkWithMeshStruct(meshSt,ref);
+ }
+ catch(INTERP_KERNEL::Exception& e)
+ {
+ std::ostringstream oss; oss << e.what() << " (" << MEDCouplingFieldDiscretization::GetTypeOfFieldRepr(ret.getType()) << ")";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
return ret;
}
return ret;
}
-std::vector<const BigMemoryObject *> MEDFileField1TSStruct::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileField1TSStruct::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
for(std::vector<MEDFileField1TSStructItem>::const_iterator it=_already_checked.begin();it!=_already_checked.end();it++)
int pos0(-1),pos1(-1);
if(presenceOfCellDiscr(pos0))
{
- MEDCouplingAutoRefCountObjectPtr<MEDMeshMultiLev> ret(_already_checked[pos0].buildFromScratchDataSetSupportOnCells(mst,globs));
+ MCAuto<MEDMeshMultiLev> ret(_already_checked[pos0].buildFromScratchDataSetSupportOnCells(mst,globs));
if(presenceOfPartialNodeDiscr(pos1))
ret->setNodeReduction(_already_checked[pos1][0].getPfl(globs));
return ret.retn();
else
{
if(!presenceOfPartialNodeDiscr(pos1))
- {//we have only all nodes, no cell definition info -> level 0;
- std::vector<int> levs(1,0);
- return MEDMeshMultiLev::New(mst->getTheMesh(),levs);
+ {//we have only all nodes, no cell definition info -> all existing levels !;
+ return MEDMeshMultiLev::New(mst->getTheMesh(),mst->getTheMesh()->getNonEmptyLevels());
}
else
return MEDMeshMultiLev::NewOnlyOnNode(mst->getTheMesh(),_already_checked[pos1][0].getPfl(globs));
return true;
}
+std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileField1TSStruct::getGeoTypes(const MEDFileMesh *m) const
+{
+ std::vector<INTERP_KERNEL::NormalizedCellType> ret;
+ for(std::vector<MEDFileField1TSStructItem>::const_iterator it=_already_checked.begin();it!=_already_checked.end();it++)
+ {
+ std::vector<INTERP_KERNEL::NormalizedCellType> ret2((*it).getGeoTypes(m));
+ for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator it2=ret2.begin();it2!=ret2.end();it2++)
+ {
+ if(*it2==INTERP_KERNEL::NORM_ERROR)
+ continue;
+ std::vector<INTERP_KERNEL::NormalizedCellType>::iterator it3(std::find(ret.begin(),ret.end(),*it2));
+ if(it3==ret.end())
+ ret.push_back(*it2);
+ }
+ }
+ return ret;
+}
+
/*!
* Returns true if presence in \a this of discretization ON_CELLS, ON_GAUSS_PT, ON_GAUSS_NE.
- * If true is returned the pos of the easiest is returned. The easiest is the first element in \a this having the less splitted subparts.
+ * If true is returned the pos of the easiest is returned. The easiest is the first element in \a this having the less split subparts.
*/
bool MEDFileField1TSStruct::presenceOfCellDiscr(int& pos) const
{
_f1ts_cmps.resize(nbPts);
for(int i=0;i<nbPts;i++)
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileAnyTypeField1TS> elt=ref->getTimeStepAtPos(i);
- _f1ts_cmps[i]=MEDFileField1TSStruct::New(elt,_mesh_comp);
- _f1ts_cmps[i]->checkWithMeshStruct(_mesh_comp,elt);
+ MCAuto<MEDFileAnyTypeField1TS> elt=ref->getTimeStepAtPos(i);
+ try
+ {
+ _f1ts_cmps[i]=MEDFileField1TSStruct::New(elt,_mesh_comp);
+ _f1ts_cmps[i]->checkWithMeshStruct(_mesh_comp,elt);
+ }
+ catch(INTERP_KERNEL::Exception& e)
+ {
+ std::ostringstream oss; oss << "Problem in field with name \"" << ref->getName() << "\"" << std::endl;
+ oss << "More Details : " << e.what();
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
}
}
std::size_t MEDFileFastCellSupportComparator::getHeapMemorySizeWithoutChildren() const
{
- std::size_t ret(_f1ts_cmps.capacity()*sizeof(MEDCouplingAutoRefCountObjectPtr<MEDFileField1TSStruct>));
+ std::size_t ret(_f1ts_cmps.capacity()*sizeof(MCAuto<MEDFileField1TSStruct>));
return ret;
}
-std::vector<const BigMemoryObject *> MEDFileFastCellSupportComparator::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDFileFastCellSupportComparator::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
const MEDFileMeshStruct *mst(_mesh_comp);
if(mst)
ret.push_back(mst);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileField1TSStruct> >::const_iterator it=_f1ts_cmps.begin();it!=_f1ts_cmps.end();it++)
- {
- const MEDFileField1TSStruct *cur(*it);
- if(cur)
- ret.push_back(cur);
- }
+ for(std::vector< MCAuto<MEDFileField1TSStruct> >::const_iterator it=_f1ts_cmps.begin();it!=_f1ts_cmps.end();it++)
+ ret.push_back((const MEDFileField1TSStruct *)*it);
return ret;
}
}
for(int i=0;i<nbPts;i++)
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileAnyTypeField1TS> elt=other->getTimeStepAtPos(i);
+ MCAuto<MEDFileAnyTypeField1TS> elt=other->getTimeStepAtPos(i);
if(!_f1ts_cmps[i]->isEqualConsideringThePast(elt,_mesh_comp))
if(!_f1ts_cmps[i]->isSupportSameAs(elt,_mesh_comp))
return false;
}
for(int i=0;i<nbPts;i++)
{
- MEDCouplingAutoRefCountObjectPtr<MEDFileAnyTypeField1TS> elt=other->getTimeStepAtPos(i);
+ MCAuto<MEDFileAnyTypeField1TS> elt=other->getTimeStepAtPos(i);
if(!_f1ts_cmps[i]->isCompatibleWithNodesDiscr(elt,_mesh_comp))
return false;
}
const MEDFileField1TSStruct *objRef(_f1ts_cmps[timeStepId-1]);
return objRef->isDataSetSupportFastlyEqualTo(*obj,globs);
}
+
+int MEDFileFastCellSupportComparator::getNumberOfTS() const
+{
+ return (int)_f1ts_cmps.size();
+}
+
+std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileFastCellSupportComparator::getGeoTypesAt(int timeStepId, const MEDFileMesh *m) const
+{
+ if(timeStepId<0 || timeStepId>=(int)_f1ts_cmps.size())
+ {
+ std::ostringstream oss; oss << "MEDFileFastCellSupportComparator::getGeoTypesAt : requested time step id #" << timeStepId << " is not in [0," << _f1ts_cmps.size() << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ const MEDFileField1TSStruct *elt(_f1ts_cmps[timeStepId]);
+ if(!elt)
+ {
+ std::ostringstream oss; oss << "MEDFileFastCellSupportComparator::getGeoTypesAt : requested time step id #" << timeStepId << " points to a NULL pointer !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ return elt->getGeoTypes(m);
+}