-// Copyright (C) 2007-2008 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2013 CEA/DEN, EDF R&D
//
-// This library is free software; you can redistribute it and/or
-// modify it under the terms of the GNU Lesser General Public
-// License as published by the Free Software Foundation; either
-// version 2.1 of the License.
+// This library is free software; you can redistribute it and/or
+// modify it under the terms of the GNU Lesser General Public
+// License as published by the Free Software Foundation; either
+// version 2.1 of the License.
//
-// This library is distributed in the hope that it will be useful,
-// but WITHOUT ANY WARRANTY; without even the implied warranty of
-// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-// Lesser General Public License for more details.
+// This library is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+// Lesser General Public License for more details.
//
-// You should have received a copy of the GNU Lesser General Public
-// License along with this library; if not, write to the Free Software
-// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+// You should have received a copy of the GNU Lesser General Public
+// License along with this library; if not, write to the Free Software
+// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
//
-// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
+// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
//
+// Author : Anthony Geay (CEA/DEN)
+
#include "MEDCouplingUMesh.hxx"
+#include "MEDCoupling1GTUMesh.hxx"
+#include "MEDCouplingMemArray.txx"
+#include "MEDCouplingFieldDouble.hxx"
#include "CellModel.hxx"
+#include "VolSurfUser.txx"
+#include "InterpolationUtils.hxx"
+#include "PointLocatorAlgos.txx"
+#include "BBTree.txx"
+#include "BBTreeDst.txx"
+#include "SplitterTetra.hxx"
+#include "DirectedBoundingBox.hxx"
+#include "InterpKernelMatrixTools.hxx"
+#include "InterpKernelMeshQuality.hxx"
+#include "InterpKernelCellSimplify.hxx"
+#include "InterpKernelGeo2DEdgeArcCircle.hxx"
+#include "InterpKernelAutoPtr.hxx"
+#include "InterpKernelGeo2DNode.hxx"
+#include "InterpKernelGeo2DEdgeLin.hxx"
+#include "InterpKernelGeo2DEdgeArcCircle.hxx"
+#include "InterpKernelGeo2DQuadraticPolygon.hxx"
#include <sstream>
+#include <fstream>
+#include <numeric>
+#include <cstring>
+#include <limits>
+#include <list>
using namespace ParaMEDMEM;
+double MEDCouplingUMesh::EPS_FOR_POLYH_ORIENTATION=1.e-14;
+
+const INTERP_KERNEL::NormalizedCellType MEDCouplingUMesh::MEDMEM_ORDER[N_MEDMEM_ORDER] = { INTERP_KERNEL::NORM_POINT1, INTERP_KERNEL::NORM_SEG2, INTERP_KERNEL::NORM_SEG3, INTERP_KERNEL::NORM_SEG4, INTERP_KERNEL::NORM_POLYL, INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6, INTERP_KERNEL::NORM_TRI7, INTERP_KERNEL::NORM_QUAD8, INTERP_KERNEL::NORM_QUAD9, INTERP_KERNEL::NORM_POLYGON, INTERP_KERNEL::NORM_QPOLYG, INTERP_KERNEL::NORM_TETRA4, INTERP_KERNEL::NORM_PYRA5, INTERP_KERNEL::NORM_PENTA6, INTERP_KERNEL::NORM_HEXA8, INTERP_KERNEL::NORM_HEXGP12, INTERP_KERNEL::NORM_TETRA10, INTERP_KERNEL::NORM_PYRA13, INTERP_KERNEL::NORM_PENTA15, INTERP_KERNEL::NORM_HEXA20, INTERP_KERNEL::NORM_HEXA27, INTERP_KERNEL::NORM_POLYHED };
+
MEDCouplingUMesh *MEDCouplingUMesh::New()
{
- return new MEDCouplingUMesh;
+ return new MEDCouplingUMesh;
}
-void MEDCouplingUMesh::updateTime()
+MEDCouplingUMesh *MEDCouplingUMesh::New(const std::string& meshName, int meshDim)
{
- if(_nodal_connec)
- {
- updateTimeWith(*_nodal_connec);
- }
- if(_nodal_connec_index)
- {
- updateTimeWith(*_nodal_connec_index);
- }
- if(_coords)
- {
- updateTimeWith(*_coords);
- }
+ MEDCouplingUMesh *ret=new MEDCouplingUMesh;
+ ret->setName(meshName);
+ ret->setMeshDimension(meshDim);
+ return ret;
}
-MEDCouplingUMesh::MEDCouplingUMesh():_iterator(-1),_mesh_dim(-1),
- _nodal_connec(0),_nodal_connec_index(0),_coords(0)
+/*!
+ * Returns a new MEDCouplingMesh which is a full copy of \a this one. No data is shared
+ * between \a this and the new mesh.
+ * \return MEDCouplingMesh * - a new instance of MEDCouplingMesh. The caller is to
+ * delete this mesh using decrRef() as it is no more needed.
+ */
+MEDCouplingMesh *MEDCouplingUMesh::deepCpy() const
{
+ return clone(true);
}
-void MEDCouplingUMesh::checkCoherency() const throw(INTERP_KERNEL::Exception)
+/*!
+ * Returns a new MEDCouplingMesh which is a copy of \a this one.
+ * \param [in] recDeepCpy - if \a true, the copy is deep, else all data arrays of \a
+ * this mesh are shared by the new mesh.
+ * \return MEDCouplingMesh * - a new instance of MEDCouplingMesh. The caller is to
+ * delete this mesh using decrRef() as it is no more needed.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::clone(bool recDeepCpy) const
{
- for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
- {
- if(INTERP_KERNEL::CellModel::getCellModel(*iter).getDimension()!=_mesh_dim)
+ return new MEDCouplingUMesh(*this,recDeepCpy);
+}
+
+/*!
+ * This method behaves mostly like MEDCouplingUMesh::deepCpy method, except that only nodal connectivity arrays are deeply copied.
+ * The coordinates are shared between \a this and the returned instance.
+ *
+ * \return MEDCouplingUMesh * - A new object instance holding the copy of \a this (deep for connectivity, shallow for coordiantes)
+ * \sa MEDCouplingUMesh::deepCpy
+ */
+MEDCouplingPointSet *MEDCouplingUMesh::deepCpyConnectivityOnly() const
+{
+ checkConnectivityFullyDefined();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=clone(false);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c(getNodalConnectivity()->deepCpy()),ci(getNodalConnectivityIndex()->deepCpy());
+ ret->setConnectivity(c,ci);
+ return ret.retn();
+}
+
+void MEDCouplingUMesh::shallowCopyConnectivityFrom(const MEDCouplingPointSet *other)
+{
+ if(!other)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::shallowCopyConnectivityFrom : input pointer is null !");
+ const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
+ if(!otherC)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::shallowCopyConnectivityFrom : input pointer is not an MEDCouplingUMesh instance !");
+ MEDCouplingUMesh *otherC2=const_cast<MEDCouplingUMesh *>(otherC);//sorry :(
+ setConnectivity(otherC2->getNodalConnectivity(),otherC2->getNodalConnectivityIndex(),true);
+}
+
+std::size_t MEDCouplingUMesh::getHeapMemorySizeWithoutChildren() const
+{
+ std::size_t ret(MEDCouplingPointSet::getHeapMemorySizeWithoutChildren());
+ return ret;
+}
+
+std::vector<const BigMemoryObject *> MEDCouplingUMesh::getDirectChildren() const
+{
+ std::vector<const BigMemoryObject *> ret(MEDCouplingPointSet::getDirectChildren());
+ if(_nodal_connec)
+ ret.push_back(_nodal_connec);
+ if(_nodal_connec_index)
+ ret.push_back(_nodal_connec_index);
+ return ret;
+}
+
+void MEDCouplingUMesh::updateTime() const
+{
+ MEDCouplingPointSet::updateTime();
+ if(_nodal_connec)
{
- std::ostringstream message;
- message << "Mesh invalid because dimension is " << _mesh_dim << " and there is presence of cell(s) with type " << (*iter);
- throw INTERP_KERNEL::Exception(message.str().c_str());
+ updateTimeWith(*_nodal_connec);
+ }
+ if(_nodal_connec_index)
+ {
+ updateTimeWith(*_nodal_connec_index);
}
- }
}
-void MEDCouplingUMesh::setMeshDimension(unsigned meshDim)
+MEDCouplingUMesh::MEDCouplingUMesh():_mesh_dim(-2),_nodal_connec(0),_nodal_connec_index(0)
{
- _mesh_dim=meshDim;
- declareAsNew();
}
-void MEDCouplingUMesh::allocateCells(int nbOfCells)
+/*!
+ * Checks if \a this mesh is well defined. If no exception is thrown by this method,
+ * then \a this mesh is most probably is writable, exchangeable and available for most
+ * of algorithms. When a mesh is constructed from scratch, it is a good habit to call
+ * this method to check that all is in order with \a this mesh.
+ * \throw If the mesh dimension is not set.
+ * \throw If the coordinates array is not set (if mesh dimension != -1 ).
+ * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
+ * \throw If the connectivity data array has more than one component.
+ * \throw If the connectivity data array has a named component.
+ * \throw If the connectivity index data array has more than one component.
+ * \throw If the connectivity index data array has a named component.
+ */
+void MEDCouplingUMesh::checkCoherency() const
{
- if(_nodal_connec_index)
- {
- _nodal_connec_index->decrRef();
- }
- if(_nodal_connec)
- {
- _nodal_connec->decrRef();
- }
+ if(_mesh_dim<-1)
+ throw INTERP_KERNEL::Exception("No mesh dimension specified !");
+ if(_mesh_dim!=-1)
+ MEDCouplingPointSet::checkCoherency();
+ for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
+ {
+ if((int)INTERP_KERNEL::CellModel::GetCellModel(*iter).getDimension()!=_mesh_dim)
+ {
+ std::ostringstream message;
+ message << "Mesh invalid because dimension is " << _mesh_dim << " and there is presence of cell(s) with type " << (*iter);
+ throw INTERP_KERNEL::Exception(message.str().c_str());
+ }
+ }
+ if(_nodal_connec)
+ {
+ if(_nodal_connec->getNumberOfComponents()!=1)
+ throw INTERP_KERNEL::Exception("Nodal connectivity array is expected to be with number of components set to one !");
+ if(_nodal_connec->getInfoOnComponent(0)!="")
+ throw INTERP_KERNEL::Exception("Nodal connectivity array is expected to have no info on its single component !");
+ }
+ else
+ if(_mesh_dim!=-1)
+ throw INTERP_KERNEL::Exception("Nodal connectivity array is not defined !");
+ if(_nodal_connec_index)
+ {
+ if(_nodal_connec_index->getNumberOfComponents()!=1)
+ throw INTERP_KERNEL::Exception("Nodal connectivity index array is expected to be with number of components set to one !");
+ if(_nodal_connec_index->getInfoOnComponent(0)!="")
+ throw INTERP_KERNEL::Exception("Nodal connectivity index array is expected to have no info on its single component !");
+ }
+ else
+ if(_mesh_dim!=-1)
+ throw INTERP_KERNEL::Exception("Nodal connectivity index array is not defined !");
+}
- _nodal_connec_index=DataArrayInt::New();
- _nodal_connec_index->alloc(nbOfCells+1,1);
- int *pt=_nodal_connec_index->getPointer();
- pt[0]=0;
- _nodal_connec=DataArrayInt::New();
- _nodal_connec->alloc(2*nbOfCells,1);
- _iterator=0;
- _types.clear();
- declareAsNew();
+/*!
+ * Checks if \a this mesh is well defined. If no exception is thrown by this method,
+ * then \a this mesh is most probably is writable, exchangeable and available for all
+ * algorithms. <br> In addition to the checks performed by checkCoherency(), this
+ * method thoroughly checks the nodal connectivity.
+ * \param [in] eps - a not used parameter.
+ * \throw If the mesh dimension is not set.
+ * \throw If the coordinates array is not set (if mesh dimension != -1 ).
+ * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
+ * \throw If the connectivity data array has more than one component.
+ * \throw If the connectivity data array has a named component.
+ * \throw If the connectivity index data array has more than one component.
+ * \throw If the connectivity index data array has a named component.
+ * \throw If number of nodes defining an element does not correspond to the type of element.
+ * \throw If the nodal connectivity includes an invalid node id.
+ */
+void MEDCouplingUMesh::checkCoherency1(double eps) const
+{
+ checkCoherency();
+ if(_mesh_dim==-1)
+ return ;
+ int meshDim=getMeshDimension();
+ int nbOfNodes=getNumberOfNodes();
+ int nbOfCells=getNumberOfCells();
+ const int *ptr=_nodal_connec->getConstPointer();
+ const int *ptrI=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)ptr[ptrI[i]]);
+ if((int)cm.getDimension()!=meshDim)
+ {
+ std::ostringstream oss;
+ oss << "MEDCouplingUMesh::checkCoherency1 : cell << #" << i<< " with type Type " << cm.getRepr() << " in 'this' whereas meshdim == " << meshDim << " !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ int nbOfNodesInCell=ptrI[i+1]-ptrI[i]-1;
+ if(!cm.isDynamic())
+ if(nbOfNodesInCell!=(int)cm.getNumberOfNodes())
+ {
+ std::ostringstream oss;
+ oss << "MEDCouplingUMesh::checkCoherency1 : cell #" << i << " with static Type '" << cm.getRepr() << "' has " << cm.getNumberOfNodes();
+ oss << " nodes whereas in connectivity there is " << nbOfNodesInCell << " nodes ! Looks very bad !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ for(const int *w=ptr+ptrI[i]+1;w!=ptr+ptrI[i+1];w++)
+ {
+ int nodeId=*w;
+ if(nodeId>=0)
+ {
+ if(nodeId>=nbOfNodes)
+ {
+ std::ostringstream oss; oss << "Cell #" << i << " is consituted of node #" << nodeId << " whereas there are only " << nbOfNodes << " nodes !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ else if(nodeId<-1)
+ {
+ std::ostringstream oss; oss << "Cell #" << i << " is consituted of node #" << nodeId << " in connectivity ! sounds bad !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ else
+ {
+ if((INTERP_KERNEL::NormalizedCellType)(ptr[ptrI[i]])!=INTERP_KERNEL::NORM_POLYHED)
+ {
+ std::ostringstream oss; oss << "Cell #" << i << " is consituted of node #-1 in connectivity ! sounds bad !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ }
+ }
+}
+
+
+/*!
+ * Checks if \a this mesh is well defined. If no exception is thrown by this method,
+ * then \a this mesh is most probably is writable, exchangeable and available for all
+ * algorithms. <br> This method performs the same checks as checkCoherency1() does.
+ * \param [in] eps - a not used parameter.
+ * \throw If the mesh dimension is not set.
+ * \throw If the coordinates array is not set (if mesh dimension != -1 ).
+ * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
+ * \throw If the connectivity data array has more than one component.
+ * \throw If the connectivity data array has a named component.
+ * \throw If the connectivity index data array has more than one component.
+ * \throw If the connectivity index data array has a named component.
+ * \throw If number of nodes defining an element does not correspond to the type of element.
+ * \throw If the nodal connectivity includes an invalid node id.
+ */
+void MEDCouplingUMesh::checkCoherency2(double eps) const
+{
+ checkCoherency1(eps);
}
-void MEDCouplingUMesh::setCoords(DataArrayDouble *coords)
+/*!
+ * Sets dimension of \a this mesh. The mesh dimension in general depends on types of
+ * elements contained in the mesh. For more info on the mesh dimension see
+ * \ref MEDCouplingUMeshPage.
+ * \param [in] meshDim - a new mesh dimension.
+ * \throw If \a meshDim is invalid. A valid range is <em> -1 <= meshDim <= 3</em>.
+ */
+void MEDCouplingUMesh::setMeshDimension(int meshDim)
{
- if( coords != _coords )
- {
- if (_coords)
- _coords->decrRef();
- _coords=coords;
- if(_coords)
- _coords->incrRef();
- declareAsNew();
+ if(meshDim<-1 || meshDim>3)
+ throw INTERP_KERNEL::Exception("Invalid meshDim specified ! Must be greater or equal to -1 and lower or equal to 3 !");
+ _mesh_dim=meshDim;
+ declareAsNew();
+}
+
+/*!
+ * Allocates memory to store an estimation of the given number of cells. Closer is the estimation to the number of cells effectively inserted,
+ * less will be the needs to realloc. If the number of cells to be inserted is not known simply put 0 to this parameter.
+ * If a nodal connectivity previouly existed before the call of this method, it will be reset.
+ *
+ * \param [in] nbOfCells - estimation of the number of cell \a this mesh will contain.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
+ * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::allocateCells(int nbOfCells)
+{
+ if(nbOfCells<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::allocateCells : the input number of cells should be >= 0 !");
+ if(_nodal_connec_index)
+ {
+ _nodal_connec_index->decrRef();
+ }
+ if(_nodal_connec)
+ {
+ _nodal_connec->decrRef();
}
+ _nodal_connec_index=DataArrayInt::New();
+ _nodal_connec_index->reserve(nbOfCells+1);
+ _nodal_connec_index->pushBackSilent(0);
+ _nodal_connec=DataArrayInt::New();
+ _nodal_connec->reserve(2*nbOfCells);
+ _types.clear();
+ declareAsNew();
}
+/*!
+ * Appends a cell to the connectivity array. For deeper understanding what is
+ * happening see \ref MEDCouplingUMeshNodalConnectivity.
+ * \param [in] type - type of cell to add.
+ * \param [in] size - number of nodes constituting this cell.
+ * \param [in] nodalConnOfCell - the connectivity of the cell to add.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
+ * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
+ * \endif
+ */
void MEDCouplingUMesh::insertNextCell(INTERP_KERNEL::NormalizedCellType type, int size, const int *nodalConnOfCell)
{
- int *pt=_nodal_connec_index->getPointer();
- int idx=pt[_iterator];
-
- _nodal_connec->writeOnPlace(idx,type,nodalConnOfCell,size);
- _types.insert(type);
- pt[++_iterator]=idx+size+1;
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
+ if(_nodal_connec_index==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::insertNextCell : nodal connectivity not set ! invoke allocateCells before calling insertNextCell !");
+ if((int)cm.getDimension()==_mesh_dim)
+ {
+ if(!cm.isDynamic())
+ if(size!=(int)cm.getNumberOfNodes())
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::insertNextCell : Trying to push a " << cm.getRepr() << " cell with a size of " << size;
+ oss << " ! Expecting " << cm.getNumberOfNodes() << " !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ int idx=_nodal_connec_index->back();
+ int val=idx+size+1;
+ _nodal_connec_index->pushBackSilent(val);
+ _nodal_connec->writeOnPlace(idx,type,nodalConnOfCell,size);
+ _types.insert(type);
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::insertNextCell : cell type " << cm.getRepr() << " has a dimension " << cm.getDimension();
+ oss << " whereas Mesh Dimension of current UMesh instance is set to " << _mesh_dim << " ! Please invoke \"setMeshDimension\" method before or invoke ";
+ oss << "\"MEDCouplingUMesh::New\" static method with 2 parameters name and meshDimension !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
}
+/*!
+ * Compacts data arrays to release unused memory. This method is to be called after
+ * finishing cell insertion using \a this->insertNextCell().
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
+ * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
+ * \endif
+ */
void MEDCouplingUMesh::finishInsertingCells()
{
- int *pt=_nodal_connec_index->getPointer();
- int idx=pt[_iterator];
+ _nodal_connec->pack();
+ _nodal_connec_index->pack();
+ _nodal_connec->declareAsNew();
+ _nodal_connec_index->declareAsNew();
+ updateTime();
+}
- _nodal_connec->reAlloc(idx);
- _nodal_connec_index->reAlloc(_iterator+1);
- _iterator=-1;
+/*!
+ * Entry point for iteration over cells of this. Warning the returned cell iterator should be deallocated.
+ * Useful for python users.
+ */
+MEDCouplingUMeshCellIterator *MEDCouplingUMesh::cellIterator()
+{
+ return new MEDCouplingUMeshCellIterator(this);
}
-INTERP_KERNEL::NormalizedCellType MEDCouplingUMesh::getTypeOfCell(int cellId) const
+/*!
+ * Entry point for iteration over cells groups geo types per geotypes. Warning the returned cell iterator should be deallocated.
+ * If \a this is not so that that cells are grouped by geo types this method will throw an exception.
+ * In this case MEDCouplingUMesh::sortCellsInMEDFileFrmt or MEDCouplingUMesh::rearrange2ConsecutiveCellTypes methods for example can be called before invoking this method.
+ * Useful for python users.
+ */
+MEDCouplingUMeshCellByTypeEntry *MEDCouplingUMesh::cellsByType()
{
- int *ptI=_nodal_connec_index->getPointer();
- int *pt=_nodal_connec->getPointer();
- return (INTERP_KERNEL::NormalizedCellType) pt[ptI[cellId]];
+ if(!checkConsecutiveCellTypes())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::cellsByType : this mesh is not sorted by type !");
+ return new MEDCouplingUMeshCellByTypeEntry(this);
}
-int MEDCouplingUMesh::getNumberOfNodesInCell(int cellId) const
+/*!
+ * Returns a set of all cell types available in \a this mesh.
+ * \return std::set<INTERP_KERNEL::NormalizedCellType> - the set of cell types.
+ * \warning this method does not throw any exception even if \a this is not defined.
+ * \sa MEDCouplingUMesh::getAllGeoTypesSorted
+ */
+std::set<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getAllGeoTypes() const
{
- int *ptI=_nodal_connec_index->getPointer();
- return ptI[cellId+1]-ptI[cellId]-1;
+ return _types;
}
-void MEDCouplingUMesh::setConnectivity(DataArrayInt *conn, DataArrayInt *connIndex, bool isComputingTypes)
+/*!
+ * This method returns the sorted list of geometric types in \a this.
+ * Sorted means in the same order than the cells in \a this. A single entry in return vector means the maximal chunk of consecutive cells in \a this
+ * having the same geometric type. So a same geometric type can appear more than once if the cells are not sorted per geometric type.
+ *
+ * \throw if connectivity in \a this is not correctly defined.
+ *
+ * \sa MEDCouplingMesh::getAllGeoTypes
+ */
+std::vector<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getAllGeoTypesSorted() const
{
- if(_nodal_connec!=conn)
- {
- if(_nodal_connec)
- _nodal_connec->decrRef();
- _nodal_connec=conn;
- if(_nodal_connec)
- _nodal_connec->incrRef();
+ std::vector<INTERP_KERNEL::NormalizedCellType> ret;
+ checkConnectivityFullyDefined();
+ int nbOfCells(getNumberOfCells());
+ if(nbOfCells==0)
+ return ret;
+ if(getMeshLength()<1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAllGeoTypesSorted : the connectivity in this seems invalid !");
+ const int *c(_nodal_connec->begin()),*ci(_nodal_connec_index->begin());
+ ret.push_back((INTERP_KERNEL::NormalizedCellType)c[*ci++]);
+ for(int i=1;i<nbOfCells;i++,ci++)
+ if(ret.back()!=((INTERP_KERNEL::NormalizedCellType)c[*ci]))
+ ret.push_back((INTERP_KERNEL::NormalizedCellType)c[*ci]);
+ return ret;
+}
+
+/*!
+ * This method is a method that compares \a this and \a other.
+ * This method compares \b all attributes, even names and component names.
+ */
+bool MEDCouplingUMesh::isEqualIfNotWhy(const MEDCouplingMesh *other, double prec, std::string& reason) const
+{
+ if(!other)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isEqualIfNotWhy : input other pointer is null !");
+ std::ostringstream oss; oss.precision(15);
+ const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
+ if(!otherC)
+ {
+ reason="mesh given in input is not castable in MEDCouplingUMesh !";
+ return false;
}
- if(_nodal_connec_index!=connIndex)
+ if(!MEDCouplingPointSet::isEqualIfNotWhy(other,prec,reason))
+ return false;
+ if(_mesh_dim!=otherC->_mesh_dim)
{
- if(_nodal_connec_index)
- _nodal_connec_index->decrRef();
- _nodal_connec_index=connIndex;
- if(_nodal_connec_index)
- _nodal_connec_index->incrRef();
+ oss << "umesh dimension mismatch : this mesh dimension=" << _mesh_dim << " other mesh dimension=" << otherC->_mesh_dim;
+ reason=oss.str();
+ return false;
}
- if(isComputingTypes)
+ if(_types!=otherC->_types)
+ {
+ oss << "umesh geometric type mismatch :\nThis geometric types are :";
+ for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
+ { const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter); oss << cm.getRepr() << ", "; }
+ oss << "\nOther geometric types are :";
+ for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=otherC->_types.begin();iter!=otherC->_types.end();iter++)
+ { const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter); oss << cm.getRepr() << ", "; }
+ reason=oss.str();
+ return false;
+ }
+ if(_nodal_connec!=0 || otherC->_nodal_connec!=0)
+ if(_nodal_connec==0 || otherC->_nodal_connec==0)
+ {
+ reason="Only one UMesh between the two this and other has its nodal connectivity DataArrayInt defined !";
+ return false;
+ }
+ if(_nodal_connec!=otherC->_nodal_connec)
+ if(!_nodal_connec->isEqualIfNotWhy(*otherC->_nodal_connec,reason))
+ {
+ reason.insert(0,"Nodal connectivity DataArrayInt differ : ");
+ return false;
+ }
+ if(_nodal_connec_index!=0 || otherC->_nodal_connec_index!=0)
+ if(_nodal_connec_index==0 || otherC->_nodal_connec_index==0)
+ {
+ reason="Only one UMesh between the two this and other has its nodal connectivity index DataArrayInt defined !";
+ return false;
+ }
+ if(_nodal_connec_index!=otherC->_nodal_connec_index)
+ if(!_nodal_connec_index->isEqualIfNotWhy(*otherC->_nodal_connec_index,reason))
+ {
+ reason.insert(0,"Nodal connectivity index DataArrayInt differ : ");
+ return false;
+ }
+ return true;
+}
+
+/*!
+ * Checks if data arrays of this mesh (node coordinates, nodal
+ * connectivity of cells, etc) of two meshes are same. Textual data like name etc. are
+ * not considered.
+ * \param [in] other - the mesh to compare with.
+ * \param [in] prec - precision value used to compare node coordinates.
+ * \return bool - \a true if the two meshes are same.
+ */
+bool MEDCouplingUMesh::isEqualWithoutConsideringStr(const MEDCouplingMesh *other, double prec) const
+{
+ const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
+ if(!otherC)
+ return false;
+ if(!MEDCouplingPointSet::isEqualWithoutConsideringStr(other,prec))
+ return false;
+ if(_mesh_dim!=otherC->_mesh_dim)
+ return false;
+ if(_types!=otherC->_types)
+ return false;
+ if(_nodal_connec!=0 || otherC->_nodal_connec!=0)
+ if(_nodal_connec==0 || otherC->_nodal_connec==0)
+ return false;
+ if(_nodal_connec!=otherC->_nodal_connec)
+ if(!_nodal_connec->isEqualWithoutConsideringStr(*otherC->_nodal_connec))
+ return false;
+ if(_nodal_connec_index!=0 || otherC->_nodal_connec_index!=0)
+ if(_nodal_connec_index==0 || otherC->_nodal_connec_index==0)
+ return false;
+ if(_nodal_connec_index!=otherC->_nodal_connec_index)
+ if(!_nodal_connec_index->isEqualWithoutConsideringStr(*otherC->_nodal_connec_index))
+ return false;
+ return true;
+}
+
+/*!
+ * Checks if \a this and \a other meshes are geometrically equivalent with high
+ * probability, else an exception is thrown. The meshes are considered equivalent if
+ * (1) meshes contain the same number of nodes and the same number of elements of the
+ * same types (2) three cells of the two meshes (first, last and middle) are based
+ * on coincident nodes (with a specified precision).
+ * \param [in] other - the mesh to compare with.
+ * \param [in] prec - the precision used to compare nodes of the two meshes.
+ * \throw If the two meshes do not match.
+ */
+void MEDCouplingUMesh::checkFastEquivalWith(const MEDCouplingMesh *other, double prec) const
+{
+ MEDCouplingPointSet::checkFastEquivalWith(other,prec);
+ const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
+ if(!otherC)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkFastEquivalWith : Two meshes are not not unstructured !");
+}
+
+/*!
+ * Returns the reverse nodal connectivity. The reverse nodal connectivity enumerates
+ * cells each node belongs to.
+ * \warning For speed reasons, this method does not check if node ids in the nodal
+ * connectivity correspond to the size of node coordinates array.
+ * \param [in,out] revNodal - an array holding ids of cells sharing each node.
+ * \param [in,out] revNodalIndx - an array, of length \a this->getNumberOfNodes() + 1,
+ * dividing cell ids in \a revNodal into groups each referring to one
+ * node. Its every element (except the last one) is an index pointing to the
+ * first id of a group of cells. For example cells sharing the node #1 are
+ * described by following range of indices:
+ * [ \a revNodalIndx[1], \a revNodalIndx[2] ) and the cell ids are
+ * \a revNodal[ \a revNodalIndx[1] ], \a revNodal[ \a revNodalIndx[1] + 1], ...
+ * Number of cells sharing the *i*-th node is
+ * \a revNodalIndx[ *i*+1 ] - \a revNodalIndx[ *i* ].
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_getReverseNodalConnectivity "Here is a C++ example".<br>
+ * \ref py_mcumesh_getReverseNodalConnectivity "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::getReverseNodalConnectivity(DataArrayInt *revNodal, DataArrayInt *revNodalIndx) const
+{
+ checkFullyDefined();
+ int nbOfNodes=getNumberOfNodes();
+ int *revNodalIndxPtr=(int *)malloc((nbOfNodes+1)*sizeof(int));
+ revNodalIndx->useArray(revNodalIndxPtr,true,C_DEALLOC,nbOfNodes+1,1);
+ std::fill(revNodalIndxPtr,revNodalIndxPtr+nbOfNodes+1,0);
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ int nbOfEltsInRevNodal=0;
+ for(int eltId=0;eltId<nbOfCells;eltId++)
+ {
+ const int *strtNdlConnOfCurCell=conn+connIndex[eltId]+1;
+ const int *endNdlConnOfCurCell=conn+connIndex[eltId+1];
+ for(const int *iter=strtNdlConnOfCurCell;iter!=endNdlConnOfCurCell;iter++)
+ if(*iter>=0)//for polyhedrons
+ {
+ nbOfEltsInRevNodal++;
+ revNodalIndxPtr[(*iter)+1]++;
+ }
+ }
+ std::transform(revNodalIndxPtr+1,revNodalIndxPtr+nbOfNodes+1,revNodalIndxPtr,revNodalIndxPtr+1,std::plus<int>());
+ int *revNodalPtr=(int *)malloc((nbOfEltsInRevNodal)*sizeof(int));
+ revNodal->useArray(revNodalPtr,true,C_DEALLOC,nbOfEltsInRevNodal,1);
+ std::fill(revNodalPtr,revNodalPtr+nbOfEltsInRevNodal,-1);
+ for(int eltId=0;eltId<nbOfCells;eltId++)
+ {
+ const int *strtNdlConnOfCurCell=conn+connIndex[eltId]+1;
+ const int *endNdlConnOfCurCell=conn+connIndex[eltId+1];
+ for(const int *iter=strtNdlConnOfCurCell;iter!=endNdlConnOfCurCell;iter++)
+ if(*iter>=0)//for polyhedrons
+ *std::find_if(revNodalPtr+revNodalIndxPtr[*iter],revNodalPtr+revNodalIndxPtr[*iter+1],std::bind2nd(std::equal_to<int>(),-1))=eltId;
+ }
+}
+
+/// @cond INTERNAL
+
+int MEDCouplingFastNbrer(int id, unsigned nb, const INTERP_KERNEL::CellModel& cm, bool compute, const int *conn1, const int *conn2)
+{
+ return id;
+}
+
+int MEDCouplingOrientationSensitiveNbrer(int id, unsigned nb, const INTERP_KERNEL::CellModel& cm, bool compute, const int *conn1, const int *conn2)
+{
+ if(!compute)
+ return id+1;
+ else
+ {
+ if(cm.getOrientationStatus(nb,conn1,conn2))
+ return id+1;
+ else
+ return -(id+1);
+ }
+}
+
+class MinusOneSonsGenerator
+{
+public:
+ MinusOneSonsGenerator(const INTERP_KERNEL::CellModel& cm):_cm(cm) { }
+ unsigned getNumberOfSons2(const int *conn, int lgth) const { return _cm.getNumberOfSons2(conn,lgth); }
+ unsigned fillSonCellNodalConnectivity2(int sonId, const int *nodalConn, int lgth, int *sonNodalConn, INTERP_KERNEL::NormalizedCellType& typeOfSon) const { return _cm.fillSonCellNodalConnectivity2(sonId,nodalConn,lgth,sonNodalConn,typeOfSon); }
+ static const int DELTA=1;
+private:
+ const INTERP_KERNEL::CellModel& _cm;
+};
+
+class MinusOneSonsGeneratorBiQuadratic
+{
+public:
+ MinusOneSonsGeneratorBiQuadratic(const INTERP_KERNEL::CellModel& cm):_cm(cm) { }
+ unsigned getNumberOfSons2(const int *conn, int lgth) const { return _cm.getNumberOfSons2(conn,lgth); }
+ unsigned fillSonCellNodalConnectivity2(int sonId, const int *nodalConn, int lgth, int *sonNodalConn, INTERP_KERNEL::NormalizedCellType& typeOfSon) const { return _cm.fillSonCellNodalConnectivity4(sonId,nodalConn,lgth,sonNodalConn,typeOfSon); }
+ static const int DELTA=1;
+private:
+ const INTERP_KERNEL::CellModel& _cm;
+};
+
+class MinusTwoSonsGenerator
+{
+public:
+ MinusTwoSonsGenerator(const INTERP_KERNEL::CellModel& cm):_cm(cm) { }
+ unsigned getNumberOfSons2(const int *conn, int lgth) const { return _cm.getNumberOfEdgesIn3D(conn,lgth); }
+ unsigned fillSonCellNodalConnectivity2(int sonId, const int *nodalConn, int lgth, int *sonNodalConn, INTERP_KERNEL::NormalizedCellType& typeOfSon) const { return _cm.fillSonEdgesNodalConnectivity3D(sonId,nodalConn,lgth,sonNodalConn,typeOfSon); }
+ static const int DELTA=2;
+private:
+ const INTERP_KERNEL::CellModel& _cm;
+};
+
+/// @endcond
+
+/*!
+ * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
+ * this->getMeshDimension(), that bound cells of \a this mesh. In addition arrays
+ * describing correspondence between cells of \a this and the result meshes are
+ * returned. The arrays \a desc and \a descIndx describe the descending connectivity,
+ * i.e. enumerate cells of the result mesh bounding each cell of \a this mesh. The
+ * arrays \a revDesc and \a revDescIndx describe the reverse descending connectivity,
+ * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
+ * \warning For speed reasons, this method does not check if node ids in the nodal
+ * connectivity correspond to the size of node coordinates array.
+ * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
+ * to write this mesh to the MED file, its cells must be sorted using
+ * sortCellsInMEDFileFrmt().
+ * \param [in,out] desc - the array containing cell ids of the result mesh bounding
+ * each cell of \a this mesh.
+ * \param [in,out] descIndx - the array, of length \a this->getNumberOfCells() + 1,
+ * dividing cell ids in \a desc into groups each referring to one
+ * cell of \a this mesh. Its every element (except the last one) is an index
+ * pointing to the first id of a group of cells. For example cells of the
+ * result mesh bounding the cell #1 of \a this mesh are described by following
+ * range of indices:
+ * [ \a descIndx[1], \a descIndx[2] ) and the cell ids are
+ * \a desc[ \a descIndx[1] ], \a desc[ \a descIndx[1] + 1], ...
+ * Number of cells of the result mesh sharing the *i*-th cell of \a this mesh is
+ * \a descIndx[ *i*+1 ] - \a descIndx[ *i* ].
+ * \param [in,out] revDesc - the array containing cell ids of \a this mesh bounded
+ * by each cell of the result mesh.
+ * \param [in,out] revDescIndx - the array, of length one more than number of cells
+ * in the result mesh,
+ * dividing cell ids in \a revDesc into groups each referring to one
+ * cell of the result mesh the same way as \a descIndx divides \a desc.
+ * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is to
+ * delete this mesh using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is node defined.
+ * \throw If \a desc == NULL || \a descIndx == NULL || \a revDesc == NULL || \a
+ * revDescIndx == NULL.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_buildDescendingConnectivity "Here is a C++ example".<br>
+ * \ref py_mcumesh_buildDescendingConnectivity "Here is a Python example".
+ * \endif
+ * \sa buildDescendingConnectivity2()
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::buildDescendingConnectivity(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
+{
+ return buildDescendingConnectivityGen<MinusOneSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
+}
+
+/*!
+ * \a this has to have a mesh dimension equal to 3. If it is not the case an INTERP_KERNEL::Exception will be thrown.
+ * This behaves exactly as MEDCouplingUMesh::buildDescendingConnectivity does except that this method compute directly the transition from mesh dimension 3 to sub edges (dimension 1)
+ * in one shot. That is to say that this method is equivalent to 2 successive calls to MEDCouplingUMesh::buildDescendingConnectivity.
+ * This method returns 4 arrays and a mesh as MEDCouplingUMesh::buildDescendingConnectivity does.
+ * \sa MEDCouplingUMesh::buildDescendingConnectivity
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::explode3DMeshTo1D(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::explode3DMeshTo1D : This has to have a mesh dimension to 3 !");
+ return buildDescendingConnectivityGen<MinusTwoSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
+}
+
+/*!
+ * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
+ * this->getMeshDimension(), that bound cells of \a this mesh. In
+ * addition arrays describing correspondence between cells of \a this and the result
+ * meshes are returned. The arrays \a desc and \a descIndx describe the descending
+ * connectivity, i.e. enumerate cells of the result mesh bounding each cell of \a this
+ * mesh. This method differs from buildDescendingConnectivity() in that apart
+ * from cell ids, \a desc returns mutual orientation of cells in \a this and the
+ * result meshes. So a positive id means that order of nodes in corresponding cells
+ * of two meshes is same, and a negative id means a reverse order of nodes. Since a
+ * cell with id #0 can't be negative, the array \a desc returns ids in FORTRAN mode,
+ * i.e. cell ids are one-based.
+ * Arrays \a revDesc and \a revDescIndx describe the reverse descending connectivity,
+ * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
+ * \warning For speed reasons, this method does not check if node ids in the nodal
+ * connectivity correspond to the size of node coordinates array.
+ * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
+ * to write this mesh to the MED file, its cells must be sorted using
+ * sortCellsInMEDFileFrmt().
+ * \param [in,out] desc - the array containing cell ids of the result mesh bounding
+ * each cell of \a this mesh.
+ * \param [in,out] descIndx - the array, of length \a this->getNumberOfCells() + 1,
+ * dividing cell ids in \a desc into groups each referring to one
+ * cell of \a this mesh. Its every element (except the last one) is an index
+ * pointing to the first id of a group of cells. For example cells of the
+ * result mesh bounding the cell #1 of \a this mesh are described by following
+ * range of indices:
+ * [ \a descIndx[1], \a descIndx[2] ) and the cell ids are
+ * \a desc[ \a descIndx[1] ], \a desc[ \a descIndx[1] + 1], ...
+ * Number of cells of the result mesh sharing the *i*-th cell of \a this mesh is
+ * \a descIndx[ *i*+1 ] - \a descIndx[ *i* ].
+ * \param [in,out] revDesc - the array containing cell ids of \a this mesh bounded
+ * by each cell of the result mesh.
+ * \param [in,out] revDescIndx - the array, of length one more than number of cells
+ * in the result mesh,
+ * dividing cell ids in \a revDesc into groups each referring to one
+ * cell of the result mesh the same way as \a descIndx divides \a desc.
+ * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This result mesh
+ * shares the node coordinates array with \a this mesh. The caller is to
+ * delete this mesh using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is node defined.
+ * \throw If \a desc == NULL || \a descIndx == NULL || \a revDesc == NULL || \a
+ * revDescIndx == NULL.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_buildDescendingConnectivity2 "Here is a C++ example".<br>
+ * \ref py_mcumesh_buildDescendingConnectivity2 "Here is a Python example".
+ * \endif
+ * \sa buildDescendingConnectivity()
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::buildDescendingConnectivity2(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
+{
+ return buildDescendingConnectivityGen<MinusOneSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingOrientationSensitiveNbrer);
+}
+
+/*!
+ * \b WARNING this method do the assumption that connectivity lies on the coordinates set.
+ * For speed reasons no check of this will be done. This method calls MEDCouplingUMesh::buildDescendingConnectivity to compute the result.
+ * This method lists cell by cell in \b this which are its neighbors. To compute the result only connectivities are considered.
+ * The a cell with id 'cellId' its neighbors are neighbors[neighborsIndx[cellId]:neighborsIndx[cellId+1]].
+ *
+ * \param [out] neighbors is an array storing all the neighbors of all cells in \b this. This array is newly allocated and should be dealt by the caller. \b neighborsIndx 2nd output
+ * parameter allows to select the right part in this array. The number of tuples is equal to the last values in \b neighborsIndx.
+ * \param [out] neighborsIndx is an array of size this->getNumberOfCells()+1 newly allocated and should be dealt by the caller. This arrays allow to use the first output parameter \b neighbors.
+ */
+void MEDCouplingUMesh::computeNeighborsOfCells(DataArrayInt *&neighbors, DataArrayInt *&neighborsIndx) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> descIndx=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDesc=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDescIndx=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
+ meshDM1=0;
+ ComputeNeighborsOfCellsAdv(desc,descIndx,revDesc,revDescIndx,neighbors,neighborsIndx);
+}
+
+/*!
+ * This method is called by MEDCouplingUMesh::computeNeighborsOfCells. This methods performs the algorithm of MEDCouplingUMesh::computeNeighborsOfCells.
+ * This method is useful for users that want to reduce along a criterion the set of neighbours cell. This is typically the case to extract a set a neighbours,
+ * excluding a set of meshdim-1 cells in input descending connectivity.
+ * Typically \b desc, \b descIndx, \b revDesc and \b revDescIndx input params are the result of MEDCouplingUMesh::buildDescendingConnectivity.
+ * This method lists cell by cell in \b this which are its neighbors. To compute the result only connectivities are considered.
+ * The a cell with id 'cellId' its neighbors are neighbors[neighborsIndx[cellId]:neighborsIndx[cellId+1]].
+ *
+ * \param [in] desc descending connectivity array.
+ * \param [in] descIndx descending connectivity index array used to walk through \b desc.
+ * \param [in] revDesc reverse descending connectivity array.
+ * \param [in] revDescIndx reverse descending connectivity index array used to walk through \b revDesc.
+ * \param [out] neighbors is an array storing all the neighbors of all cells in \b this. This array is newly allocated and should be dealt by the caller. \b neighborsIndx 2nd output
+ * parameter allows to select the right part in this array. The number of tuples is equal to the last values in \b neighborsIndx.
+ * \param [out] neighborsIndx is an array of size this->getNumberOfCells()+1 newly allocated and should be dealt by the caller. This arrays allow to use the first output parameter \b neighbors.
+ */
+void MEDCouplingUMesh::ComputeNeighborsOfCellsAdv(const DataArrayInt *desc, const DataArrayInt *descIndx, const DataArrayInt *revDesc, const DataArrayInt *revDescIndx,
+ DataArrayInt *&neighbors, DataArrayInt *&neighborsIndx) throw(INTERP_KERNEL::Exception)
+{
+ if(!desc || !descIndx || !revDesc || !revDescIndx)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeNeighborsOfCellsAdv some input array is empty !");
+ const int *descPtr=desc->getConstPointer();
+ const int *descIPtr=descIndx->getConstPointer();
+ const int *revDescPtr=revDesc->getConstPointer();
+ const int *revDescIPtr=revDescIndx->getConstPointer();
+ //
+ int nbCells=descIndx->getNumberOfTuples()-1;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> out0=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> out1=DataArrayInt::New(); out1->alloc(nbCells+1,1);
+ int *out1Ptr=out1->getPointer();
+ *out1Ptr++=0;
+ out0->reserve(desc->getNumberOfTuples());
+ for(int i=0;i<nbCells;i++,descIPtr++,out1Ptr++)
+ {
+ for(const int *w1=descPtr+descIPtr[0];w1!=descPtr+descIPtr[1];w1++)
+ {
+ std::set<int> s(revDescPtr+revDescIPtr[*w1],revDescPtr+revDescIPtr[(*w1)+1]);
+ s.erase(i);
+ out0->insertAtTheEnd(s.begin(),s.end());
+ }
+ *out1Ptr=out0->getNumberOfTuples();
+ }
+ neighbors=out0.retn();
+ neighborsIndx=out1.retn();
+}
+
+/// @cond INTERNAL
+
+/*!
+ * \b WARNING this method do the assumption that connectivity lies on the coordinates set.
+ * For speed reasons no check of this will be done.
+ */
+template<class SonsGenerator>
+MEDCouplingUMesh *MEDCouplingUMesh::buildDescendingConnectivityGen(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx, DimM1DescNbrer nbrer) const
+{
+ if(!desc || !descIndx || !revDesc || !revDescIndx)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildDescendingConnectivityGen : present of a null pointer in input !");
+ checkConnectivityFullyDefined();
+ int nbOfCells=getNumberOfCells();
+ int nbOfNodes=getNumberOfNodes();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revNodalIndx=DataArrayInt::New(); revNodalIndx->alloc(nbOfNodes+1,1); revNodalIndx->fillWithZero();
+ int *revNodalIndxPtr=revNodalIndx->getPointer();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ std::string name="Mesh constituent of "; name+=getName();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New(name,getMeshDimension()-SonsGenerator::DELTA);
+ ret->setCoords(getCoords());
+ ret->allocateCells(2*nbOfCells);
+ descIndx->alloc(nbOfCells+1,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDesc2(DataArrayInt::New()); revDesc2->reserve(2*nbOfCells);
+ int *descIndxPtr=descIndx->getPointer(); *descIndxPtr++=0;
+ for(int eltId=0;eltId<nbOfCells;eltId++,descIndxPtr++)
+ {
+ int pos=connIndex[eltId];
+ int posP1=connIndex[eltId+1];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[pos]);
+ SonsGenerator sg(cm);
+ unsigned nbOfSons=sg.getNumberOfSons2(conn+pos+1,posP1-pos-1);
+ INTERP_KERNEL::AutoPtr<int> tmp=new int[posP1-pos];
+ for(unsigned i=0;i<nbOfSons;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType cmsId;
+ unsigned nbOfNodesSon=sg.fillSonCellNodalConnectivity2(i,conn+pos+1,posP1-pos-1,tmp,cmsId);
+ for(unsigned k=0;k<nbOfNodesSon;k++)
+ if(tmp[k]>=0)
+ revNodalIndxPtr[tmp[k]+1]++;
+ ret->insertNextCell(cmsId,nbOfNodesSon,tmp);
+ revDesc2->pushBackSilent(eltId);
+ }
+ descIndxPtr[0]=descIndxPtr[-1]+(int)nbOfSons;
+ }
+ int nbOfCellsM1=ret->getNumberOfCells();
+ std::transform(revNodalIndxPtr+1,revNodalIndxPtr+nbOfNodes+1,revNodalIndxPtr,revNodalIndxPtr+1,std::plus<int>());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revNodal=DataArrayInt::New(); revNodal->alloc(revNodalIndx->back(),1);
+ std::fill(revNodal->getPointer(),revNodal->getPointer()+revNodalIndx->back(),-1);
+ int *revNodalPtr=revNodal->getPointer();
+ const int *connM1=ret->getNodalConnectivity()->getConstPointer();
+ const int *connIndexM1=ret->getNodalConnectivityIndex()->getConstPointer();
+ for(int eltId=0;eltId<nbOfCellsM1;eltId++)
+ {
+ const int *strtNdlConnOfCurCell=connM1+connIndexM1[eltId]+1;
+ const int *endNdlConnOfCurCell=connM1+connIndexM1[eltId+1];
+ for(const int *iter=strtNdlConnOfCurCell;iter!=endNdlConnOfCurCell;iter++)
+ if(*iter>=0)//for polyhedrons
+ *std::find_if(revNodalPtr+revNodalIndxPtr[*iter],revNodalPtr+revNodalIndxPtr[*iter+1],std::bind2nd(std::equal_to<int>(),-1))=eltId;
+ }
+ //
+ DataArrayInt *commonCells=0,*commonCellsI=0;
+ FindCommonCellsAlg(3,0,ret->getNodalConnectivity(),ret->getNodalConnectivityIndex(),revNodal,revNodalIndx,commonCells,commonCellsI);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> commonCellsTmp(commonCells),commonCellsITmp(commonCellsI);
+ const int *commonCellsPtr(commonCells->getConstPointer()),*commonCellsIPtr(commonCellsI->getConstPointer());
+ int newNbOfCellsM1=-1;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2nM1=DataArrayInt::BuildOld2NewArrayFromSurjectiveFormat2(nbOfCellsM1,commonCells->begin(),
+ commonCellsI->begin(),commonCellsI->end(),newNbOfCellsM1);
+ std::vector<bool> isImpacted(nbOfCellsM1,false);
+ for(const int *work=commonCellsI->begin();work!=commonCellsI->end()-1;work++)
+ for(int work2=work[0];work2!=work[1];work2++)
+ isImpacted[commonCellsPtr[work2]]=true;
+ const int *o2nM1Ptr=o2nM1->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> n2oM1=o2nM1->invertArrayO2N2N2OBis(newNbOfCellsM1);
+ const int *n2oM1Ptr=n2oM1->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret2=static_cast<MEDCouplingUMesh *>(ret->buildPartOfMySelf(n2oM1->begin(),n2oM1->end(),true));
+ ret2->copyTinyInfoFrom(this);
+ desc->alloc(descIndx->back(),1);
+ int *descPtr=desc->getPointer();
+ const INTERP_KERNEL::CellModel& cmsDft=INTERP_KERNEL::CellModel::GetCellModel(INTERP_KERNEL::NORM_POINT1);
+ for(int i=0;i<nbOfCellsM1;i++,descPtr++)
+ {
+ if(!isImpacted[i])
+ *descPtr=nbrer(o2nM1Ptr[i],0,cmsDft,false,0,0);
+ else
+ {
+ if(i!=n2oM1Ptr[o2nM1Ptr[i]])
+ {
+ const INTERP_KERNEL::CellModel& cms=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)connM1[connIndexM1[i]]);
+ *descPtr=nbrer(o2nM1Ptr[i],connIndexM1[i+1]-connIndexM1[i]-1,cms,true,connM1+connIndexM1[n2oM1Ptr[o2nM1Ptr[i]]]+1,connM1+connIndexM1[i]+1);
+ }
+ else
+ *descPtr=nbrer(o2nM1Ptr[i],0,cmsDft,false,0,0);
+ }
+ }
+ revDesc->reserve(newNbOfCellsM1);
+ revDescIndx->alloc(newNbOfCellsM1+1,1);
+ int *revDescIndxPtr=revDescIndx->getPointer(); *revDescIndxPtr++=0;
+ const int *revDesc2Ptr=revDesc2->getConstPointer();
+ for(int i=0;i<newNbOfCellsM1;i++,revDescIndxPtr++)
+ {
+ int oldCellIdM1=n2oM1Ptr[i];
+ if(!isImpacted[oldCellIdM1])
+ {
+ revDesc->pushBackSilent(revDesc2Ptr[oldCellIdM1]);
+ revDescIndxPtr[0]=revDescIndxPtr[-1]+1;
+ }
+ else
+ {
+ for(int j=commonCellsIPtr[0];j<commonCellsIPtr[1];j++)
+ revDesc->pushBackSilent(revDesc2Ptr[commonCellsPtr[j]]);
+ revDescIndxPtr[0]=revDescIndxPtr[-1]+commonCellsIPtr[1]-commonCellsIPtr[0];
+ commonCellsIPtr++;
+ }
+ }
+ //
+ return ret2.retn();
+}
+
+struct MEDCouplingAccVisit
+{
+ MEDCouplingAccVisit():_new_nb_of_nodes(0) { }
+ int operator()(int val) { if(val!=-1) return _new_nb_of_nodes++; else return -1; }
+ int _new_nb_of_nodes;
+};
+
+/// @endcond
+
+/*!
+ * Converts specified cells to either polygons (if \a this is a 2D mesh) or
+ * polyhedrons (if \a this is a 3D mesh). The cells to convert are specified by an
+ * array of cell ids. Pay attention that after conversion all algorithms work slower
+ * with \a this mesh than before conversion. <br> If an exception is thrown during the
+ * conversion due presence of invalid ids in the array of cells to convert, as a
+ * result \a this mesh contains some already converted elements. In this case the 2D
+ * mesh remains valid but 3D mesh becomes \b inconsistent!
+ * \warning This method can significantly modify the order of geometric types in \a this,
+ * hence, to write this mesh to the MED file, its cells must be sorted using
+ * sortCellsInMEDFileFrmt().
+ * \param [in] cellIdsToConvertBg - the array holding ids of cells to convert.
+ * \param [in] cellIdsToConvertEnd - a pointer to the last-plus-one-th element of \a
+ * cellIdsToConvertBg.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is node defined.
+ * \throw If dimension of \a this mesh is not either 2 or 3.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_convertToPolyTypes "Here is a C++ example".<br>
+ * \ref py_mcumesh_convertToPolyTypes "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::convertToPolyTypes(const int *cellIdsToConvertBg, const int *cellIdsToConvertEnd)
+{
+ checkFullyDefined();
+ int dim=getMeshDimension();
+ if(dim<2 || dim>3)
+ throw INTERP_KERNEL::Exception("Invalid mesh dimension : must be 2 or 3 !");
+ int nbOfCells(getNumberOfCells());
+ if(dim==2)
+ {
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ int *conn=_nodal_connec->getPointer();
+ for(const int *iter=cellIdsToConvertBg;iter!=cellIdsToConvertEnd;iter++)
+ {
+ if(*iter>=0 && *iter<nbOfCells)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*iter]]);
+ if(!cm.isQuadratic())
+ conn[connIndex[*iter]]=INTERP_KERNEL::NORM_POLYGON;
+ else
+ conn[connIndex[*iter]]=INTERP_KERNEL::NORM_QPOLYG;
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::convertToPolyTypes : On rank #" << std::distance(cellIdsToConvertBg,iter) << " value is " << *iter << " which is not";
+ oss << " in range [0," << nbOfCells << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ }
+ else
+ {
+ int *connIndex(_nodal_connec_index->getPointer());
+ const int *connOld(_nodal_connec->getConstPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> connNew(DataArrayInt::New()),connNewI(DataArrayInt::New()); connNew->alloc(0,1); connNewI->alloc(1,1); connNewI->setIJ(0,0,0);
+ std::vector<bool> toBeDone(nbOfCells,false);
+ for(const int *iter=cellIdsToConvertBg;iter!=cellIdsToConvertEnd;iter++)
+ {
+ if(*iter>=0 && *iter<nbOfCells)
+ toBeDone[*iter]=true;
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::convertToPolyTypes : On rank #" << std::distance(cellIdsToConvertBg,iter) << " value is " << *iter << " which is not";
+ oss << " in range [0," << nbOfCells << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ for(int cellId=0;cellId<nbOfCells;cellId++)
+ {
+ int pos(connIndex[cellId]),posP1(connIndex[cellId+1]);
+ int lgthOld(posP1-pos-1);
+ if(toBeDone[cellId])
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)connOld[pos]);
+ unsigned nbOfFaces(cm.getNumberOfSons2(connOld+pos+1,lgthOld));
+ int *tmp(new int[nbOfFaces*lgthOld+1]);
+ int *work=tmp; *work++=INTERP_KERNEL::NORM_POLYHED;
+ for(unsigned j=0;j<nbOfFaces;j++)
+ {
+ INTERP_KERNEL::NormalizedCellType type;
+ unsigned offset=cm.fillSonCellNodalConnectivity2(j,connOld+pos+1,lgthOld,work,type);
+ work+=offset;
+ *work++=-1;
+ }
+ std::size_t newLgth(std::distance(tmp,work)-1);//-1 for last -1
+ connNew->pushBackValsSilent(tmp,tmp+newLgth);
+ connNewI->pushBackSilent(connNewI->back()+(int)newLgth);
+ delete [] tmp;
+ }
+ else
+ {
+ connNew->pushBackValsSilent(connOld+pos,connOld+posP1);
+ connNewI->pushBackSilent(connNewI->back()+posP1-pos);
+ }
+ }
+ setConnectivity(connNew,connNewI,false);//false because computeTypes called just behind.
+ }
+ computeTypes();
+}
+
+/*!
+ * Converts all cells to either polygons (if \a this is a 2D mesh) or
+ * polyhedrons (if \a this is a 3D mesh).
+ * \warning As this method is purely for user-friendliness and no optimization is
+ * done to avoid construction of a useless vector, this method can be costly
+ * in memory.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is node defined.
+ * \throw If dimension of \a this mesh is not either 2 or 3.
+ */
+void MEDCouplingUMesh::convertAllToPoly()
+{
+ int nbOfCells=getNumberOfCells();
+ std::vector<int> cellIds(nbOfCells);
+ for(int i=0;i<nbOfCells;i++)
+ cellIds[i]=i;
+ convertToPolyTypes(&cellIds[0],&cellIds[0]+cellIds.size());
+}
+
+/*!
+ * Fixes nodal connectivity of invalid cells of type NORM_POLYHED. This method
+ * expects that all NORM_POLYHED cells have connectivity similar to that of prismatic
+ * volumes like NORM_HEXA8, NORM_PENTA6 etc., i.e. the first half of nodes describes a
+ * base facet of the volume and the second half of nodes describes an opposite facet
+ * having the same number of nodes as the base one. This method converts such
+ * connectivity to a valid polyhedral format where connectivity of each facet is
+ * explicitly described and connectivity of facets are separated by -1. If \a this mesh
+ * contains a NORM_POLYHED cell with a valid connectivity, or an invalid connectivity is
+ * not as expected, an exception is thrown and the mesh remains unchanged. Care of
+ * a correct orientation of the first facet of a polyhedron, else orientation of a
+ * corrected cell is reverse.<br>
+ * This method is useful to build an extruded unstructured mesh with polyhedrons as
+ * it releases the user from boring description of polyhedra connectivity in the valid
+ * format.
+ * \throw If \a this->getMeshDimension() != 3.
+ * \throw If \a this->getSpaceDimension() != 3.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If the coordinates array is not set.
+ * \throw If \a this mesh contains polyhedrons with the valid connectivity.
+ * \throw If \a this mesh contains polyhedrons with odd number of nodes.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
+ * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::convertExtrudedPolyhedra()
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertExtrudedPolyhedra works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newCi=DataArrayInt::New();
+ newCi->alloc(nbOfCells+1,1);
+ int *newci=newCi->getPointer();
+ const int *ci=_nodal_connec_index->getConstPointer();
+ const int *c=_nodal_connec->getConstPointer();
+ newci[0]=0;
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[i]];
+ if(type==INTERP_KERNEL::NORM_POLYHED)
+ {
+ if(std::count(c+ci[i]+1,c+ci[i+1],-1)!=0)
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::convertExtrudedPolyhedra : cell # " << i << " is a polhedron BUT it has NOT exactly 1 face !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ std::size_t n2=std::distance(c+ci[i]+1,c+ci[i+1]);
+ if(n2%2!=0)
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::convertExtrudedPolyhedra : cell # " << i << " is a polhedron with 1 face but there is a mismatch of number of nodes in face should be even !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ int n1=(int)(n2/2);
+ newci[i+1]=7*n1+2+newci[i];//6*n1 (nodal length) + n1+2 (number of faces) - 1 (number of '-1' separator is equal to number of faces -1) + 1 (for cell type)
+ }
+ else
+ newci[i+1]=(ci[i+1]-ci[i])+newci[i];
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newC=DataArrayInt::New();
+ newC->alloc(newci[nbOfCells],1);
+ int *newc=newC->getPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[i]];
+ if(type==INTERP_KERNEL::NORM_POLYHED)
+ {
+ std::size_t n1=std::distance(c+ci[i]+1,c+ci[i+1])/2;
+ newc=std::copy(c+ci[i],c+ci[i]+n1+1,newc);
+ *newc++=-1;
+ for(std::size_t j=0;j<n1;j++)
+ {
+ newc[j]=c[ci[i]+1+n1+(n1-j)%n1];
+ newc[n1+5*j]=-1;
+ newc[n1+5*j+1]=c[ci[i]+1+j];
+ newc[n1+5*j+2]=c[ci[i]+1+j+n1];
+ newc[n1+5*j+3]=c[ci[i]+1+(j+1)%n1+n1];
+ newc[n1+5*j+4]=c[ci[i]+1+(j+1)%n1];
+ }
+ newc+=n1*6;
+ }
+ else
+ newc=std::copy(c+ci[i],c+ci[i+1],newc);
+ }
+ _nodal_connec_index->decrRef(); _nodal_connec_index=newCi.retn();
+ _nodal_connec->decrRef(); _nodal_connec=newC.retn();
+}
+
+
+/*!
+ * Converts all polygons (if \a this is a 2D mesh) or polyhedrons (if \a this is a 3D
+ * mesh) to cells of classical types. This method is opposite to convertToPolyTypes().
+ * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
+ * to write this mesh to the MED file, its cells must be sorted using
+ * sortCellsInMEDFileFrmt().
+ * \return \c true if at least one cell has been converted, \c false else. In the
+ * last case the nodal connectivity remains unchanged.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If \a this->getMeshDimension() < 0.
+ */
+bool MEDCouplingUMesh::unPolyze()
+{
+ checkFullyDefined();
+ int mdim=getMeshDimension();
+ if(mdim<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::unPolyze works on umeshes with meshdim equals to 0, 1 2 or 3 !");
+ if(mdim<=1)
+ return false;
+ int nbOfCells=getNumberOfCells();
+ if(nbOfCells<1)
+ return false;
+ int initMeshLgth=getMeshLength();
+ int *conn=_nodal_connec->getPointer();
+ int *index=_nodal_connec_index->getPointer();
+ int posOfCurCell=0;
+ int newPos=0;
+ int lgthOfCurCell;
+ bool ret=false;
+ for(int i=0;i<nbOfCells;i++)
+ {
+ lgthOfCurCell=index[i+1]-posOfCurCell;
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[posOfCurCell];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
+ INTERP_KERNEL::NormalizedCellType newType=INTERP_KERNEL::NORM_ERROR;
+ int newLgth;
+ if(cm.isDynamic())
+ {
+ switch(cm.getDimension())
+ {
+ case 2:
+ {
+ INTERP_KERNEL::AutoPtr<int> tmp=new int[lgthOfCurCell-1];
+ std::copy(conn+posOfCurCell+1,conn+posOfCurCell+lgthOfCurCell,(int *)tmp);
+ newType=INTERP_KERNEL::CellSimplify::tryToUnPoly2D(cm.isQuadratic(),tmp,lgthOfCurCell-1,conn+newPos+1,newLgth);
+ break;
+ }
+ case 3:
+ {
+ int nbOfFaces,lgthOfPolyhConn;
+ INTERP_KERNEL::AutoPtr<int> zipFullReprOfPolyh=INTERP_KERNEL::CellSimplify::getFullPolyh3DCell(type,conn+posOfCurCell+1,lgthOfCurCell-1,nbOfFaces,lgthOfPolyhConn);
+ newType=INTERP_KERNEL::CellSimplify::tryToUnPoly3D(zipFullReprOfPolyh,nbOfFaces,lgthOfPolyhConn,conn+newPos+1,newLgth);
+ break;
+ }
+ case 1:
+ {
+ newType=(lgthOfCurCell==3)?INTERP_KERNEL::NORM_SEG2:INTERP_KERNEL::NORM_POLYL;
+ break;
+ }
+ }
+ ret=ret || (newType!=type);
+ conn[newPos]=newType;
+ newPos+=newLgth+1;
+ posOfCurCell=index[i+1];
+ index[i+1]=newPos;
+ }
+ else
+ {
+ std::copy(conn+posOfCurCell,conn+posOfCurCell+lgthOfCurCell,conn+newPos);
+ newPos+=lgthOfCurCell;
+ posOfCurCell+=lgthOfCurCell;
+ index[i+1]=newPos;
+ }
+ }
+ if(newPos!=initMeshLgth)
+ _nodal_connec->reAlloc(newPos);
+ if(ret)
computeTypes();
+ return ret;
}
-MEDCouplingUMesh::~MEDCouplingUMesh()
+/*!
+ * This method expects that spaceDimension is equal to 3 and meshDimension equal to 3.
+ * This method performs operation only on polyhedrons in \b this. If no polyhedrons exists in \b this, \b this remains unchanged.
+ * This method allows to merge if any coplanar 3DSurf cells that may appear in some polyhedrons cells.
+ *
+ * \param [in] eps is a relative precision that allows to establish if some 3D plane are coplanar or not. This epsilon is used to recenter around origin to have maximal
+ * precision.
+ */
+void MEDCouplingUMesh::simplifyPolyhedra(double eps)
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplifyPolyhedra : works on meshdimension 3 and spaceDimension 3 !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coords=getCoords()->deepCpy();
+ coords->recenterForMaxPrecision(eps);
+ //
+ int nbOfCells=getNumberOfCells();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *index=_nodal_connec_index->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> connINew=DataArrayInt::New();
+ connINew->alloc(nbOfCells+1,1);
+ int *connINewPtr=connINew->getPointer(); *connINewPtr++=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> connNew=DataArrayInt::New(); connNew->alloc(0,1);
+ bool changed=false;
+ for(int i=0;i<nbOfCells;i++,connINewPtr++)
+ {
+ if(conn[index[i]]==(int)INTERP_KERNEL::NORM_POLYHED)
+ {
+ SimplifyPolyhedronCell(eps,coords,conn+index[i],conn+index[i+1],connNew);
+ changed=true;
+ }
+ else
+ connNew->insertAtTheEnd(conn+index[i],conn+index[i+1]);
+ *connINewPtr=connNew->getNumberOfTuples();
+ }
+ if(changed)
+ setConnectivity(connNew,connINew,false);
+}
+
+/*!
+ * This method returns all node ids used in \b this. The data array returned has to be dealt by the caller.
+ * The returned node ids are sortes ascendingly. This method is closed to MEDCouplingUMesh::getNodeIdsInUse except
+ * the format of returned DataArrayInt instance.
+ *
+ * \return a newly allocated DataArrayInt sorted ascendingly of fetched node ids.
+ * \sa MEDCouplingUMesh::getNodeIdsInUse
+ */
+DataArrayInt *MEDCouplingUMesh::computeFetchedNodeIds() const
{
- if(_nodal_connec)
- _nodal_connec->decrRef();
- if(_nodal_connec_index)
- _nodal_connec_index->decrRef();
- if(_coords)
- _coords->decrRef();
+ checkConnectivityFullyDefined();
+ int nbOfCells=getNumberOfCells();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *maxEltPt=std::max_element(_nodal_connec->begin(),_nodal_connec->end());
+ int maxElt=maxEltPt==_nodal_connec->end()?0:std::abs(*maxEltPt)+1;
+ std::vector<bool> retS(maxElt,false);
+ for(int i=0;i<nbOfCells;i++)
+ for(int j=connIndex[i]+1;j<connIndex[i+1];j++)
+ if(conn[j]>=0)
+ retS[conn[j]]=true;
+ int sz=0;
+ for(int i=0;i<maxElt;i++)
+ if(retS[i])
+ sz++;
+ DataArrayInt *ret=DataArrayInt::New();
+ ret->alloc(sz,1);
+ int *retPtr=ret->getPointer();
+ for(int i=0;i<maxElt;i++)
+ if(retS[i])
+ *retPtr++=i;
+ return ret;
}
-void MEDCouplingUMesh::computeTypes()
+/*!
+ * \param [in,out] nodeIdsInUse an array of size typically equal to nbOfNodes.
+ * \sa MEDCouplingUMesh::getNodeIdsInUse
+ */
+void MEDCouplingUMesh::computeNodeIdsAlg(std::vector<bool>& nodeIdsInUse) const
{
- if(_nodal_connec && _nodal_connec_index)
+ int nbOfNodes=(int)nodeIdsInUse.size();
+ int nbOfCells=getNumberOfCells();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ const int *conn=_nodal_connec->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ for(int j=connIndex[i]+1;j<connIndex[i+1];j++)
+ if(conn[j]>=0)
+ {
+ if(conn[j]<nbOfNodes)
+ nodeIdsInUse[conn[j]]=true;
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::getNodeIdsInUse : In cell #" << i << " presence of node id " << conn[j] << " not in [0," << nbOfNodes << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+}
+
+/*!
+ * Finds nodes not used in any cell and returns an array giving a new id to every node
+ * by excluding the unused nodes, for which the array holds -1. The result array is
+ * a mapping in "Old to New" mode.
+ * \param [out] nbrOfNodesInUse - number of node ids present in the nodal connectivity.
+ * \return DataArrayInt * - a new instance of DataArrayInt. Its length is \a
+ * this->getNumberOfNodes(). It holds for each node of \a this mesh either -1
+ * if the node is unused or a new id else. The caller is to delete this
+ * array using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If the nodal connectivity includes an invalid id.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_getNodeIdsInUse "Here is a C++ example".<br>
+ * \ref py_mcumesh_getNodeIdsInUse "Here is a Python example".
+ * \endif
+ * \sa computeNodeIdsAlg()
+ */
+DataArrayInt *MEDCouplingUMesh::getNodeIdsInUse(int& nbrOfNodesInUse) const
+{
+ nbrOfNodesInUse=-1;
+ int nbOfNodes=getNumberOfNodes();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ ret->alloc(nbOfNodes,1);
+ int *traducer=ret->getPointer();
+ std::fill(traducer,traducer+nbOfNodes,-1);
+ int nbOfCells=getNumberOfCells();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ const int *conn=_nodal_connec->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ for(int j=connIndex[i]+1;j<connIndex[i+1];j++)
+ if(conn[j]>=0)
+ {
+ if(conn[j]<nbOfNodes)
+ traducer[conn[j]]=1;
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::getNodeIdsInUse : In cell #" << i << " presence of node id " << conn[j] << " not in [0," << nbOfNodes << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ nbrOfNodesInUse=(int)std::count(traducer,traducer+nbOfNodes,1);
+ std::transform(traducer,traducer+nbOfNodes,traducer,MEDCouplingAccVisit());
+ return ret.retn();
+}
+
+/*!
+ * This method returns a newly allocated array containing this->getNumberOfCells() tuples and 1 component.
+ * For each cell in \b this the number of nodes constituting cell is computed.
+ * For each polyhedron cell, the sum of the number of nodes of each face constituting polyhedron cell is returned.
+ * So for pohyhedrons some nodes can be counted several times in the returned result.
+ *
+ * \return a newly allocated array
+ * \sa MEDCouplingUMesh::computeEffectiveNbOfNodesPerCell
+ */
+DataArrayInt *MEDCouplingUMesh::computeNbOfNodesPerCell() const
+{
+ checkConnectivityFullyDefined();
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ ret->alloc(nbOfCells,1);
+ int *retPtr=ret->getPointer();
+ const int *conn=getNodalConnectivity()->getConstPointer();
+ const int *connI=getNodalConnectivityIndex()->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,retPtr++)
{
- _types.clear();
- const int *conn=_nodal_connec->getPointer();
- const int *connIndex=_nodal_connec_index->getPointer();
- int nbOfElem=_nodal_connec_index->getNbOfElems()-1;
- for(const int *pt=connIndex;pt!=connIndex+nbOfElem;pt++)
- _types.insert((INTERP_KERNEL::NormalizedCellType)conn[*pt]);
+ if(conn[connI[i]]!=(int)INTERP_KERNEL::NORM_POLYHED)
+ *retPtr=connI[i+1]-connI[i]-1;
+ else
+ *retPtr=connI[i+1]-connI[i]-1-std::count(conn+connI[i]+1,conn+connI[i+1],-1);
}
+ return ret.retn();
}
-bool MEDCouplingUMesh::isStructured() const
+/*!
+ * This method computes effective number of nodes per cell. That is to say nodes appearing several times in nodal connectivity of a cell,
+ * will be counted only once here whereas it will be counted several times in MEDCouplingUMesh::computeNbOfNodesPerCell method.
+ *
+ * \return DataArrayInt * - new object to be deallocated by the caller.
+ * \sa MEDCouplingUMesh::computeNbOfNodesPerCell
+ */
+DataArrayInt *MEDCouplingUMesh::computeEffectiveNbOfNodesPerCell() const
{
- return false;
+ checkConnectivityFullyDefined();
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ ret->alloc(nbOfCells,1);
+ int *retPtr=ret->getPointer();
+ const int *conn=getNodalConnectivity()->getConstPointer();
+ const int *connI=getNodalConnectivityIndex()->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,retPtr++)
+ {
+ std::set<int> s(conn+connI[i]+1,conn+connI[i+1]);
+ if(conn[connI[i]]!=(int)INTERP_KERNEL::NORM_POLYHED)
+ *retPtr=(int)s.size();
+ else
+ {
+ s.erase(-1);
+ *retPtr=(int)s.size();
+ }
+ }
+ return ret.retn();
}
-int MEDCouplingUMesh::getNumberOfCells() const
-{
- if(_nodal_connec_index)
- if(_iterator==-1)
- return _nodal_connec_index->getNumberOfTuples()-1;
- else
- return _iterator;
- else
- throw INTERP_KERNEL::Exception("Unable to get number of cells because no coordinates specified !");
+/*!
+ * This method returns a newly allocated array containing this->getNumberOfCells() tuples and 1 component.
+ * For each cell in \b this the number of faces constituting (entity of dimension this->getMeshDimension()-1) cell is computed.
+ *
+ * \return a newly allocated array
+ */
+DataArrayInt *MEDCouplingUMesh::computeNbOfFacesPerCell() const
+{
+ checkConnectivityFullyDefined();
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ ret->alloc(nbOfCells,1);
+ int *retPtr=ret->getPointer();
+ const int *conn=getNodalConnectivity()->getConstPointer();
+ const int *connI=getNodalConnectivityIndex()->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,retPtr++,connI++)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]);
+ *retPtr=cm.getNumberOfSons2(conn+connI[0]+1,connI[1]-connI[0]-1);
+ }
+ return ret.retn();
}
-int MEDCouplingUMesh::getNumberOfNodes() const
+/*!
+ * Removes unused nodes (the node coordinates array is shorten) and returns an array
+ * mapping between new and old node ids in "Old to New" mode. -1 values in the returned
+ * array mean that the corresponding old node is no more used.
+ * \return DataArrayInt * - a new instance of DataArrayInt of length \a
+ * this->getNumberOfNodes() before call of this method. The caller is to
+ * delete this array using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If the nodal connectivity includes an invalid id.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_zipCoordsTraducer "Here is a C++ example".<br>
+ * \ref py_mcumesh_zipCoordsTraducer "Here is a Python example".
+ * \endif
+ */
+DataArrayInt *MEDCouplingUMesh::zipCoordsTraducer()
{
- if(_coords)
- return _coords->getNumberOfTuples();
- else
- throw INTERP_KERNEL::Exception("Unable to get number of nodes because no coordinates specified !");
+ return MEDCouplingPointSet::zipCoordsTraducer();
}
-int MEDCouplingUMesh::getSpaceDimension() const
+/*!
+ * This method stands if 'cell1' and 'cell2' are equals regarding 'compType' policy.
+ * The semantic of 'compType' is specified in MEDCouplingPointSet::zipConnectivityTraducer method.
+ */
+int MEDCouplingUMesh::AreCellsEqual(const int *conn, const int *connI, int cell1, int cell2, int compType)
{
- if(_coords)
- return _coords->getNumberOfComponents();
- else
- throw INTERP_KERNEL::Exception("Unable to get space dimension because no coordinates specified !");
+ switch(compType)
+ {
+ case 0:
+ return AreCellsEqual0(conn,connI,cell1,cell2);
+ case 1:
+ return AreCellsEqual1(conn,connI,cell1,cell2);
+ case 2:
+ return AreCellsEqual2(conn,connI,cell1,cell2);
+ case 3:
+ return AreCellsEqual3(conn,connI,cell1,cell2);
+ case 7:
+ return AreCellsEqual7(conn,connI,cell1,cell2);
+ }
+ throw INTERP_KERNEL::Exception("Unknown comparison asked ! Must be in 0,1,2,3 or 7.");
}
-int MEDCouplingUMesh::getMeshLength() const
+/*!
+ * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 0.
+ */
+int MEDCouplingUMesh::AreCellsEqual0(const int *conn, const int *connI, int cell1, int cell2)
{
- return _nodal_connec->getNbOfElems();
+ if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
+ return std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1)?1:0;
+ return 0;
+}
+
+/*!
+ * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 1.
+ */
+int MEDCouplingUMesh::AreCellsEqual1(const int *conn, const int *connI, int cell1, int cell2)
+{
+ int sz=connI[cell1+1]-connI[cell1];
+ if(sz==connI[cell2+1]-connI[cell2])
+ {
+ if(conn[connI[cell1]]==conn[connI[cell2]])
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[cell1]]);
+ unsigned dim=cm.getDimension();
+ if(dim!=3)
+ {
+ if(dim!=1)
+ {
+ int sz1=2*(sz-1);
+ INTERP_KERNEL::AutoPtr<int> tmp=new int[sz1];
+ int *work=std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],(int *)tmp);
+ std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],work);
+ work=std::search((int *)tmp,(int *)tmp+sz1,conn+connI[cell2]+1,conn+connI[cell2+1]);
+ return work!=tmp+sz1?1:0;
+ }
+ else
+ return std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1)?1:0;//case of SEG2 and SEG3
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AreCellsEqual1 : not implemented yet for meshdim == 3 !");
+ }
+ }
+ return 0;
+}
+
+/*!
+ * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 2.
+ */
+int MEDCouplingUMesh::AreCellsEqual2(const int *conn, const int *connI, int cell1, int cell2)
+{
+ if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
+ {
+ if(conn[connI[cell1]]==conn[connI[cell2]])
+ {
+ std::set<int> s1(conn+connI[cell1]+1,conn+connI[cell1+1]);
+ std::set<int> s2(conn+connI[cell2]+1,conn+connI[cell2+1]);
+ return s1==s2?1:0;
+ }
+ }
+ return 0;
+}
+
+/*!
+ * This method is less restrictive than AreCellsEqual2. Here the geometric type is absolutely not taken into account !
+ */
+int MEDCouplingUMesh::AreCellsEqual3(const int *conn, const int *connI, int cell1, int cell2)
+{
+ if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
+ {
+ std::set<int> s1(conn+connI[cell1]+1,conn+connI[cell1+1]);
+ std::set<int> s2(conn+connI[cell2]+1,conn+connI[cell2+1]);
+ return s1==s2?1:0;
+ }
+ return 0;
+}
+
+/*!
+ * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 7.
+ */
+int MEDCouplingUMesh::AreCellsEqual7(const int *conn, const int *connI, int cell1, int cell2)
+{
+ int sz=connI[cell1+1]-connI[cell1];
+ if(sz==connI[cell2+1]-connI[cell2])
+ {
+ if(conn[connI[cell1]]==conn[connI[cell2]])
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[cell1]]);
+ unsigned dim=cm.getDimension();
+ if(dim!=3)
+ {
+ if(dim!=1)
+ {
+ int sz1=2*(sz-1);
+ INTERP_KERNEL::AutoPtr<int> tmp=new int[sz1];
+ int *work=std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],(int *)tmp);
+ std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],work);
+ work=std::search((int *)tmp,(int *)tmp+sz1,conn+connI[cell2]+1,conn+connI[cell2+1]);
+ if(work!=tmp+sz1)
+ return 1;
+ else
+ {
+ std::reverse_iterator<int *> it1((int *)tmp+sz1);
+ std::reverse_iterator<int *> it2((int *)tmp);
+ if(std::search(it1,it2,conn+connI[cell2]+1,conn+connI[cell2+1])!=it2)
+ return 2;
+ else
+ return 0;
+ }
+
+ return work!=tmp+sz1?1:0;
+ }
+ else
+ {//case of SEG2 and SEG3
+ if(std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1))
+ return 1;
+ if(!cm.isQuadratic())
+ {
+ std::reverse_iterator<const int *> it1(conn+connI[cell1+1]);
+ std::reverse_iterator<const int *> it2(conn+connI[cell1]+1);
+ if(std::equal(it1,it2,conn+connI[cell2]+1))
+ return 2;
+ return 0;
+ }
+ else
+ {
+ if(conn[connI[cell1]+1]==conn[connI[cell2]+2] && conn[connI[cell1]+2]==conn[connI[cell2]+1] && conn[connI[cell1]+3]==conn[connI[cell2]+3])
+ return 2;
+ return 0;
+ }
+ }
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AreCellsEqual7 : not implemented yet for meshdim == 3 !");
+ }
+ }
+ return 0;
+}
+
+/*!
+ * This method find in candidate pool defined by 'candidates' the cells equal following the polycy 'compType'.
+ * If any true is returned and the results will be put at the end of 'result' output parameter. If not false is returned
+ * and result remains unchanged.
+ * The semantic of 'compType' is specified in MEDCouplingPointSet::zipConnectivityTraducer method.
+ * If in 'candidates' pool -1 value is considered as an empty value.
+ * WARNING this method returns only ONE set of result !
+ */
+bool MEDCouplingUMesh::AreCellsEqualInPool(const std::vector<int>& candidates, int compType, const int *conn, const int *connI, DataArrayInt *result)
+{
+ if(candidates.size()<1)
+ return false;
+ bool ret=false;
+ std::vector<int>::const_iterator iter=candidates.begin();
+ int start=(*iter++);
+ for(;iter!=candidates.end();iter++)
+ {
+ int status=AreCellsEqual(conn,connI,start,*iter,compType);
+ if(status!=0)
+ {
+ if(!ret)
+ {
+ result->pushBackSilent(start);
+ ret=true;
+ }
+ if(status==1)
+ result->pushBackSilent(*iter);
+ else
+ result->pushBackSilent(status==2?(*iter+1):-(*iter+1));
+ }
+ }
+ return ret;
+}
+
+/*!
+ * This method find cells that are cells equal (regarding \a compType) in \a this. The comparison is specified by \a compType.
+ * This method keeps the coordiantes of \a this. This method is time consuming and is called
+ *
+ * \param [in] compType input specifying the technique used to compare cells each other.
+ * - 0 : exactly. A cell is detected to be the same if and only if the connectivity is exactly the same without permutation and types same too. This is the strongest policy.
+ * - 1 : permutation same orientation. cell1 and cell2 are considered equal if the connectivity of cell2 can be deduced by those of cell1 by direct permutation (with exactly the same orientation)
+ * and their type equal. For 1D mesh the policy 1 is equivalent to 0.
+ * - 2 : nodal. cell1 and cell2 are equal if and only if cell1 and cell2 have same type and have the same nodes constituting connectivity. This is the laziest policy. This policy
+ * can be used for users not sensitive to orientation of cell
+ * \param [in] startCellId specifies the cellId starting from which the equality computation will be carried out. By default it is 0, which it means that all cells in \a this will be scanned.
+ * \param [out] commonCells
+ * \param [out] commonCellsI
+ * \return the correspondance array old to new in a newly allocated array.
+ *
+ */
+void MEDCouplingUMesh::findCommonCells(int compType, int startCellId, DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revNodal=DataArrayInt::New(),revNodalI=DataArrayInt::New();
+ getReverseNodalConnectivity(revNodal,revNodalI);
+ FindCommonCellsAlg(compType,startCellId,_nodal_connec,_nodal_connec_index,revNodal,revNodalI,commonCellsArr,commonCellsIArr);
+}
+
+void MEDCouplingUMesh::FindCommonCellsAlg(int compType, int startCellId, const DataArrayInt *nodal, const DataArrayInt *nodalI, const DataArrayInt *revNodal, const DataArrayInt *revNodalI,
+ DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr) throw(INTERP_KERNEL::Exception)
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> commonCells=DataArrayInt::New(),commonCellsI=DataArrayInt::New(); commonCells->alloc(0,1);
+ int nbOfCells=nodalI->getNumberOfTuples()-1;
+ commonCellsI->reserve(1); commonCellsI->pushBackSilent(0);
+ const int *revNodalPtr=revNodal->getConstPointer(),*revNodalIPtr=revNodalI->getConstPointer();
+ const int *connPtr=nodal->getConstPointer(),*connIPtr=nodalI->getConstPointer();
+ std::vector<bool> isFetched(nbOfCells,false);
+ if(startCellId==0)
+ {
+ for(int i=0;i<nbOfCells;i++)
+ {
+ if(!isFetched[i])
+ {
+ const int *connOfNode=std::find_if(connPtr+connIPtr[i]+1,connPtr+connIPtr[i+1],std::bind2nd(std::not_equal_to<int>(),-1));
+ std::vector<int> v,v2;
+ if(connOfNode!=connPtr+connIPtr[i+1])
+ {
+ const int *locRevNodal=std::find(revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],i);
+ v2.insert(v2.end(),locRevNodal,revNodalPtr+revNodalIPtr[*connOfNode+1]);
+ connOfNode++;
+ }
+ for(;connOfNode!=connPtr+connIPtr[i+1] && v2.size()>1;connOfNode++)
+ if(*connOfNode>=0)
+ {
+ v=v2;
+ const int *locRevNodal=std::find(revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],i);
+ std::vector<int>::iterator it=std::set_intersection(v.begin(),v.end(),locRevNodal,revNodalPtr+revNodalIPtr[*connOfNode+1],v2.begin());
+ v2.resize(std::distance(v2.begin(),it));
+ }
+ if(v2.size()>1)
+ {
+ if(AreCellsEqualInPool(v2,compType,connPtr,connIPtr,commonCells))
+ {
+ int pos=commonCellsI->back();
+ commonCellsI->pushBackSilent(commonCells->getNumberOfTuples());
+ for(const int *it=commonCells->begin()+pos;it!=commonCells->end();it++)
+ isFetched[*it]=true;
+ }
+ }
+ }
+ }
+ }
+ else
+ {
+ for(int i=startCellId;i<nbOfCells;i++)
+ {
+ if(!isFetched[i])
+ {
+ const int *connOfNode=std::find_if(connPtr+connIPtr[i]+1,connPtr+connIPtr[i+1],std::bind2nd(std::not_equal_to<int>(),-1));
+ std::vector<int> v,v2;
+ if(connOfNode!=connPtr+connIPtr[i+1])
+ {
+ v2.insert(v2.end(),revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1]);
+ connOfNode++;
+ }
+ for(;connOfNode!=connPtr+connIPtr[i+1] && v2.size()>1;connOfNode++)
+ if(*connOfNode>=0)
+ {
+ v=v2;
+ std::vector<int>::iterator it=std::set_intersection(v.begin(),v.end(),revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],v2.begin());
+ v2.resize(std::distance(v2.begin(),it));
+ }
+ if(v2.size()>1)
+ {
+ if(AreCellsEqualInPool(v2,compType,connPtr,connIPtr,commonCells))
+ {
+ int pos=commonCellsI->back();
+ commonCellsI->pushBackSilent(commonCells->getNumberOfTuples());
+ for(const int *it=commonCells->begin()+pos;it!=commonCells->end();it++)
+ isFetched[*it]=true;
+ }
+ }
+ }
+ }
+ }
+ commonCellsArr=commonCells.retn();
+ commonCellsIArr=commonCellsI.retn();
+}
+
+/*!
+ * Checks if \a this mesh includes all cells of an \a other mesh, and returns an array
+ * giving for each cell of the \a other an id of a cell in \a this mesh. A value larger
+ * than \a other->getNumberOfCells() in the returned array means that there is no
+ * corresponding cell in \a this mesh.
+ * It is expected that \a this and \a other meshes share the same node coordinates
+ * array, if it is not so an exception is thrown.
+ * \param [in] other - the mesh to compare with.
+ * \param [in] compType - specifies a cell comparison technique. For meaning of its
+ * valid values [0,1,2], see zipConnectivityTraducer().
+ * \param [out] arr - a new instance of DataArrayInt returning correspondence
+ * between cells of the two meshes. It contains \a other->getNumberOfCells()
+ * values. The caller is to delete this array using
+ * decrRef() as it is no more needed.
+ * \return bool - \c true if all cells of \a other mesh are present in the \a this
+ * mesh.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_areCellsIncludedIn "Here is a C++ example".<br>
+ * \ref py_mcumesh_areCellsIncludedIn "Here is a Python example".
+ * \endif
+ * \sa checkDeepEquivalOnSameNodesWith()
+ * \sa checkGeoEquivalWith()
+ */
+bool MEDCouplingUMesh::areCellsIncludedIn(const MEDCouplingUMesh *other, int compType, DataArrayInt *& arr) const
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mesh=MergeUMeshesOnSameCoords(this,other);
+ int nbOfCells=getNumberOfCells();
+ static const int possibleCompType[]={0,1,2};
+ if(std::find(possibleCompType,possibleCompType+sizeof(possibleCompType)/sizeof(int),compType)==possibleCompType+sizeof(possibleCompType)/sizeof(int))
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::areCellsIncludedIn : only following policies are possible : ";
+ std::copy(possibleCompType,possibleCompType+sizeof(possibleCompType)/sizeof(int),std::ostream_iterator<int>(oss," "));
+ oss << " !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2n=mesh->zipConnectivityTraducer(compType,nbOfCells);
+ arr=o2n->substr(nbOfCells);
+ arr->setName(other->getName());
+ int tmp;
+ if(other->getNumberOfCells()==0)
+ return true;
+ return arr->getMaxValue(tmp)<nbOfCells;
+}
+
+/*!
+ * This method makes the assumption that \a this and \a other share the same coords. If not an exception will be thrown !
+ * This method tries to determine if \b other is fully included in \b this.
+ * The main difference is that this method is not expected to throw exception.
+ * This method has two outputs :
+ *
+ * \param arr is an output parameter that returns a \b newly created instance. This array is of size 'other->getNumberOfCells()'.
+ * \return If \a other is fully included in 'this 'true is returned. If not false is returned.
+ */
+bool MEDCouplingUMesh::areCellsIncludedIn2(const MEDCouplingUMesh *other, DataArrayInt *& arr) const
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mesh=MergeUMeshesOnSameCoords(this,other);
+ DataArrayInt *commonCells=0,*commonCellsI=0;
+ int thisNbCells=getNumberOfCells();
+ mesh->findCommonCells(7,thisNbCells,commonCells,commonCellsI);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> commonCellsTmp(commonCells),commonCellsITmp(commonCellsI);
+ const int *commonCellsPtr=commonCells->getConstPointer(),*commonCellsIPtr=commonCellsI->getConstPointer();
+ int otherNbCells=other->getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arr2=DataArrayInt::New();
+ arr2->alloc(otherNbCells,1);
+ arr2->fillWithZero();
+ int *arr2Ptr=arr2->getPointer();
+ int nbOfCommon=commonCellsI->getNumberOfTuples()-1;
+ for(int i=0;i<nbOfCommon;i++)
+ {
+ int start=commonCellsPtr[commonCellsIPtr[i]];
+ if(start<thisNbCells)
+ {
+ for(int j=commonCellsIPtr[i]+1;j!=commonCellsIPtr[i+1];j++)
+ {
+ int sig=commonCellsPtr[j]>0?1:-1;
+ int val=std::abs(commonCellsPtr[j])-1;
+ if(val>=thisNbCells)
+ arr2Ptr[val-thisNbCells]=sig*(start+1);
+ }
+ }
+ }
+ arr2->setName(other->getName());
+ if(arr2->presenceOfValue(0))
+ return false;
+ arr=arr2.retn();
+ return true;
+}
+
+MEDCouplingPointSet *MEDCouplingUMesh::mergeMyselfWithOnSameCoords(const MEDCouplingPointSet *other) const
+{
+ if(!other)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::mergeMyselfWithOnSameCoords : input other is null !");
+ const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
+ if(!otherC)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::mergeMyselfWithOnSameCoords : the input other mesh is not of type unstructured !");
+ std::vector<const MEDCouplingUMesh *> ms(2);
+ ms[0]=this;
+ ms[1]=otherC;
+ return MergeUMeshesOnSameCoords(ms);
+}
+
+/*!
+ * Build a sub part of \b this lying or not on the same coordinates than \b this (regarding value of \b keepCoords).
+ * By default coordinates are kept. This method is close to MEDCouplingUMesh::buildPartOfMySelf except that here input
+ * cellIds is not given explicitely but by a range python like.
+ *
+ * \param keepCoords that specifies if you want or not to keep coords as this or zip it (see ParaMEDMEM::MEDCouplingUMesh::zipCoords). If true zipCoords is \b NOT called, if false, zipCoords is called.
+ * \return a newly allocated
+ *
+ * \warning This method modifies can generate an unstructured mesh whose cells are not sorted by geometric type order.
+ * In view of the MED file writing, a renumbering of cells of returned unstructured mesh (using MEDCouplingUMesh::sortCellsInMEDFileFrmt) should be necessary.
+ */
+MEDCouplingPointSet *MEDCouplingUMesh::buildPartOfMySelf2(int start, int end, int step, bool keepCoords) const
+{
+ if(getMeshDimension()!=-1)
+ return MEDCouplingPointSet::buildPartOfMySelf2(start,end,step,keepCoords);
+ else
+ {
+ int newNbOfCells=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::buildPartOfMySelf2 for -1 dimension mesh ");
+ if(newNbOfCells!=1)
+ throw INTERP_KERNEL::Exception("-1D mesh has only one cell !");
+ if(start!=0)
+ throw INTERP_KERNEL::Exception("-1D mesh has only one cell : 0 !");
+ incrRef();
+ return const_cast<MEDCouplingUMesh *>(this);
+ }
+}
+
+/*!
+ * Creates a new MEDCouplingUMesh containing specified cells of \a this mesh.
+ * The result mesh shares or not the node coordinates array with \a this mesh depending
+ * on \a keepCoords parameter.
+ * \warning Cells of the result mesh can be \b not sorted by geometric type, hence,
+ * to write this mesh to the MED file, its cells must be sorted using
+ * sortCellsInMEDFileFrmt().
+ * \param [in] begin - an array of cell ids to include to the new mesh.
+ * \param [in] end - a pointer to last-plus-one-th element of \a begin.
+ * \param [in] keepCoords - if \c true, the result mesh shares the node coordinates
+ * array of \a this mesh, else "free" nodes are removed from the result mesh
+ * by calling zipCoords().
+ * \return MEDCouplingPointSet * - a new instance of MEDCouplingUMesh. The caller is
+ * to delete this mesh using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If any cell id in the array \a begin is not valid.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_buildPartOfMySelf "Here is a C++ example".<br>
+ * \ref py_mcumesh_buildPartOfMySelf "Here is a Python example".
+ * \endif
+ */
+MEDCouplingPointSet *MEDCouplingUMesh::buildPartOfMySelf(const int *begin, const int *end, bool keepCoords) const
+{
+ if(getMeshDimension()!=-1)
+ return MEDCouplingPointSet::buildPartOfMySelf(begin,end,keepCoords);
+ else
+ {
+ if(end-begin!=1)
+ throw INTERP_KERNEL::Exception("-1D mesh has only one cell !");
+ if(begin[0]!=0)
+ throw INTERP_KERNEL::Exception("-1D mesh has only one cell : 0 !");
+ incrRef();
+ return const_cast<MEDCouplingUMesh *>(this);
+ }
+}
+
+/*!
+ * This method operates only on nodal connectivity on \b this. Coordinates of \b this is completely ignored here.
+ *
+ * This method allows to partially modify some cells in \b this (whose list is specified by [ \b cellIdsBg, \b cellIdsEnd ) ) with cells coming in \b otherOnSameCoordsThanThis.
+ * Size of [ \b cellIdsBg, \b cellIdsEnd ) ) must be equal to the number of cells of otherOnSameCoordsThanThis.
+ * The number of cells of \b this will remain the same with this method.
+ *
+ * \param [in] begin begin of cell ids (included) of cells in this to assign
+ * \param [in] end end of cell ids (excluded) of cells in this to assign
+ * \param [in] otherOnSameCoordsThanThis an another mesh with same meshdimension than \b this with exactly the same number of cells than cell ids list in [\b cellIdsBg, \b cellIdsEnd ).
+ * Coordinate pointer of \b this and those of \b otherOnSameCoordsThanThis must be the same
+ */
+void MEDCouplingUMesh::setPartOfMySelf(const int *cellIdsBg, const int *cellIdsEnd, const MEDCouplingUMesh& otherOnSameCoordsThanThis)
+{
+ checkConnectivityFullyDefined();
+ otherOnSameCoordsThanThis.checkConnectivityFullyDefined();
+ if(getCoords()!=otherOnSameCoordsThanThis.getCoords())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::setPartOfMySelf : coordinates pointer are not the same ! Invoke setCoords or call tryToShareSameCoords method !");
+ if(getMeshDimension()!=otherOnSameCoordsThanThis.getMeshDimension())
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : Mismatch of meshdimensions ! this is equal to " << getMeshDimension();
+ oss << ", whereas other mesh dimension is set equal to " << otherOnSameCoordsThanThis.getMeshDimension() << " !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ int nbOfCellsToModify=(int)std::distance(cellIdsBg,cellIdsEnd);
+ if(nbOfCellsToModify!=otherOnSameCoordsThanThis.getNumberOfCells())
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : cells ids length (" << nbOfCellsToModify << ") do not match the number of cells of other mesh (" << otherOnSameCoordsThanThis.getNumberOfCells() << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ int nbOfCells=getNumberOfCells();
+ bool easyAssign=true;
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const int *connIOther=otherOnSameCoordsThanThis._nodal_connec_index->getConstPointer();
+ for(const int *it=cellIdsBg;it!=cellIdsEnd && easyAssign;it++,connIOther++)
+ {
+ if(*it>=0 && *it<nbOfCells)
+ {
+ easyAssign=(connIOther[1]-connIOther[0])==(connI[*it+1]-connI[*it]);
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : On pos #" << std::distance(cellIdsBg,it) << " id is equal to " << *it << " which is not in [0," << nbOfCells << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ if(easyAssign)
+ {
+ MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx(cellIdsBg,cellIdsEnd,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index);
+ computeTypes();
+ }
+ else
+ {
+ DataArrayInt *arrOut=0,*arrIOut=0;
+ MEDCouplingUMesh::SetPartOfIndexedArrays(cellIdsBg,cellIdsEnd,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index,
+ arrOut,arrIOut);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arrOutAuto(arrOut),arrIOutAuto(arrIOut);
+ setConnectivity(arrOut,arrIOut,true);
+ }
+}
+
+void MEDCouplingUMesh::setPartOfMySelf2(int start, int end, int step, const MEDCouplingUMesh& otherOnSameCoordsThanThis)
+{
+ checkConnectivityFullyDefined();
+ otherOnSameCoordsThanThis.checkConnectivityFullyDefined();
+ if(getCoords()!=otherOnSameCoordsThanThis.getCoords())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::setPartOfMySelf2 : coordinates pointer are not the same ! Invoke setCoords or call tryToShareSameCoords method !");
+ if(getMeshDimension()!=otherOnSameCoordsThanThis.getMeshDimension())
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf2 : Mismatch of meshdimensions ! this is equal to " << getMeshDimension();
+ oss << ", whereas other mesh dimension is set equal to " << otherOnSameCoordsThanThis.getMeshDimension() << " !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ int nbOfCellsToModify=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::setPartOfMySelf2 : ");
+ if(nbOfCellsToModify!=otherOnSameCoordsThanThis.getNumberOfCells())
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf2 : cells ids length (" << nbOfCellsToModify << ") do not match the number of cells of other mesh (" << otherOnSameCoordsThanThis.getNumberOfCells() << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ int nbOfCells=getNumberOfCells();
+ bool easyAssign=true;
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const int *connIOther=otherOnSameCoordsThanThis._nodal_connec_index->getConstPointer();
+ int it=start;
+ for(int i=0;i<nbOfCellsToModify && easyAssign;i++,it+=step,connIOther++)
+ {
+ if(it>=0 && it<nbOfCells)
+ {
+ easyAssign=(connIOther[1]-connIOther[0])==(connI[it+1]-connI[it]);
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf2 : On pos #" << i << " id is equal to " << it << " which is not in [0," << nbOfCells << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ if(easyAssign)
+ {
+ MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx2(start,end,step,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index);
+ computeTypes();
+ }
+ else
+ {
+ DataArrayInt *arrOut=0,*arrIOut=0;
+ MEDCouplingUMesh::SetPartOfIndexedArrays2(start,end,step,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index,
+ arrOut,arrIOut);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arrOutAuto(arrOut),arrIOutAuto(arrIOut);
+ setConnectivity(arrOut,arrIOut,true);
+ }
+}
+
+/*!
+ * Keeps from \a this only cells which constituing point id are in the ids specified by [ \a begin,\a end ).
+ * The resulting cell ids are stored at the end of the 'cellIdsKept' parameter.
+ * Parameter \a fullyIn specifies if a cell that has part of its nodes in ids array is kept or not.
+ * If \a fullyIn is true only cells whose ids are \b fully contained in [ \a begin,\a end ) tab will be kept.
+ *
+ * \param [in] begin input start of array of node ids.
+ * \param [in] end input end of array of node ids.
+ * \param [in] fullyIn input that specifies if all node ids must be in [ \a begin,\a end ) array to consider cell to be in.
+ * \param [in,out] cellIdsKeptArr array where all candidate cell ids are put at the end.
+ */
+void MEDCouplingUMesh::fillCellIdsToKeepFromNodeIds(const int *begin, const int *end, bool fullyIn, DataArrayInt *&cellIdsKeptArr) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellIdsKept=DataArrayInt::New(); cellIdsKept->alloc(0,1);
+ checkConnectivityFullyDefined();
+ int tmp=-1;
+ int sz=getNodalConnectivity()->getMaxValue(tmp); sz=std::max(sz,0)+1;
+ std::vector<bool> fastFinder(sz,false);
+ for(const int *work=begin;work!=end;work++)
+ if(*work>=0 && *work<sz)
+ fastFinder[*work]=true;
+ int nbOfCells=getNumberOfCells();
+ const int *conn=getNodalConnectivity()->getConstPointer();
+ const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ int ref=0,nbOfHit=0;
+ for(const int *work2=conn+connIndex[i]+1;work2!=conn+connIndex[i+1];work2++)
+ if(*work2>=0)
+ {
+ ref++;
+ if(fastFinder[*work2])
+ nbOfHit++;
+ }
+ if((ref==nbOfHit && fullyIn) || (nbOfHit!=0 && !fullyIn))
+ cellIdsKept->pushBackSilent(i);
+ }
+ cellIdsKeptArr=cellIdsKept.retn();
+}
+
+/*!
+ * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
+ * this->getMeshDimension(), that bound some cells of \a this mesh.
+ * The cells of lower dimension to include to the result mesh are selected basing on
+ * specified node ids and the value of \a fullyIn parameter. If \a fullyIn ==\c true, a
+ * cell is copied if its all nodes are in the array \a begin of node ids. If \a fullyIn
+ * ==\c false, a cell is copied if any its node is in the array of node ids. The
+ * created mesh shares the node coordinates array with \a this mesh.
+ * \param [in] begin - the array of node ids.
+ * \param [in] end - a pointer to the (last+1)-th element of \a begin.
+ * \param [in] fullyIn - if \c true, then cells whose all nodes are in the
+ * array \a begin are added, else cells whose any node is in the
+ * array \a begin are added.
+ * \return MEDCouplingPointSet * - new instance of MEDCouplingUMesh. The caller is
+ * to delete this mesh using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If any node id in \a begin is not valid.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_buildFacePartOfMySelfNode "Here is a C++ example".<br>
+ * \ref py_mcumesh_buildFacePartOfMySelfNode "Here is a Python example".
+ * \endif
+ */
+MEDCouplingPointSet *MEDCouplingUMesh::buildFacePartOfMySelfNode(const int *begin, const int *end, bool fullyIn) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc,descIndx,revDesc,revDescIndx;
+ desc=DataArrayInt::New(); descIndx=DataArrayInt::New(); revDesc=DataArrayInt::New(); revDescIndx=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> subMesh=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
+ desc=0; descIndx=0; revDesc=0; revDescIndx=0;
+ return subMesh->buildPartOfMySelfNode(begin,end,fullyIn);
+}
+
+/*!
+ * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
+ * this->getMeshDimension(), which bound only one cell of \a this mesh.
+ * \param [in] keepCoords - if \c true, the result mesh shares the node coordinates
+ * array of \a this mesh, else "free" nodes are removed from the result mesh
+ * by calling zipCoords().
+ * \return MEDCouplingPointSet * - a new instance of MEDCouplingUMesh. The caller is
+ * to delete this mesh using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_buildBoundaryMesh "Here is a C++ example".<br>
+ * \ref py_mcumesh_buildBoundaryMesh "Here is a Python example".
+ * \endif
+ */
+MEDCouplingPointSet *MEDCouplingUMesh::buildBoundaryMesh(bool keepCoords) const
+{
+ DataArrayInt *desc=DataArrayInt::New();
+ DataArrayInt *descIndx=DataArrayInt::New();
+ DataArrayInt *revDesc=DataArrayInt::New();
+ DataArrayInt *revDescIndx=DataArrayInt::New();
+ //
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
+ revDesc->decrRef();
+ desc->decrRef();
+ descIndx->decrRef();
+ int nbOfCells=meshDM1->getNumberOfCells();
+ const int *revDescIndxC=revDescIndx->getConstPointer();
+ std::vector<int> boundaryCells;
+ for(int i=0;i<nbOfCells;i++)
+ if(revDescIndxC[i+1]-revDescIndxC[i]==1)
+ boundaryCells.push_back(i);
+ revDescIndx->decrRef();
+ MEDCouplingPointSet *ret=meshDM1->buildPartOfMySelf(&boundaryCells[0],&boundaryCells[0]+boundaryCells.size(),keepCoords);
+ return ret;
+}
+
+/*!
+ * This method returns a newly created DataArrayInt instance containing ids of cells located in boundary.
+ * A cell is detected to be on boundary if it contains one or more than one face having only one father.
+ * This method makes the assumption that \a this is fully defined (coords,connectivity). If not an exception will be thrown.
+ */
+DataArrayInt *MEDCouplingUMesh::findCellIdsOnBoundary() const
+{
+ checkFullyDefined();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> descIndx=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDesc=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDescIndx=DataArrayInt::New();
+ //
+ buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx)->decrRef();
+ desc=(DataArrayInt*)0; descIndx=(DataArrayInt*)0;
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp=revDescIndx->deltaShiftIndex();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> faceIds=tmp->getIdsEqual(1); tmp=(DataArrayInt*)0;
+ const int *revDescPtr=revDesc->getConstPointer();
+ const int *revDescIndxPtr=revDescIndx->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ std::vector<bool> ret1(nbOfCells,false);
+ int sz=0;
+ for(const int *pt=faceIds->begin();pt!=faceIds->end();pt++)
+ if(!ret1[revDescPtr[revDescIndxPtr[*pt]]])
+ { ret1[revDescPtr[revDescIndxPtr[*pt]]]=true; sz++; }
+ //
+ DataArrayInt *ret2=DataArrayInt::New();
+ ret2->alloc(sz,1);
+ int *ret2Ptr=ret2->getPointer();
+ sz=0;
+ for(std::vector<bool>::const_iterator it=ret1.begin();it!=ret1.end();it++,sz++)
+ if(*it)
+ *ret2Ptr++=sz;
+ ret2->setName("BoundaryCells");
+ return ret2;
+}
+
+/*!
+ * This method find in \b this cells ids that lie on mesh \b otherDimM1OnSameCoords.
+ * \b this and \b otherDimM1OnSameCoords have to lie on the same coordinate array pointer. The coherency of that coords array with connectivity
+ * of \b this and \b otherDimM1OnSameCoords is not important here because this method works only on connectivity.
+ * this->getMeshDimension() - 1 must be equal to otherDimM1OnSameCoords.getMeshDimension()
+ *
+ * s0 is the cells ids set in \b this lying on at least one node in fetched nodes in \b otherDimM1OnSameCoords.
+ * This method method returns cells ids set s = s1 + s2 where :
+ *
+ * - s1 are cells ids in \b this whose dim-1 constituent equals a cell in \b otherDimM1OnSameCoords.
+ * - s2 are cells ids in \b s0 - \b s1 whose at least two neighbors are in s1.
+ *
+ * \throw if \b otherDimM1OnSameCoords is not part of constituent of \b this, or if coordinate pointer of \b this and \b otherDimM1OnSameCoords
+ * are not same, or if this->getMeshDimension()-1!=otherDimM1OnSameCoords.getMeshDimension()
+ *
+ * \param [out] cellIdsRk0 a newly allocated array containing cells ids in \b this containg s0 in above algorithm.
+ * \param [out] cellIdsRk1 a newly allocated array containing cells ids of s1+s2 \b into \b cellIdsRk0 subset. To get absolute ids of s1+s2 simply invoke
+ * cellIdsRk1->transformWithIndArr(cellIdsRk0->begin(),cellIdsRk0->end());
+ */
+void MEDCouplingUMesh::findCellIdsLyingOn(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayInt *&cellIdsRk0, DataArrayInt *&cellIdsRk1) const
+{
+ if(getCoords()!=otherDimM1OnSameCoords.getCoords())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : coordinates pointer are not the same ! Use tryToShareSameCoords method !");
+ checkConnectivityFullyDefined();
+ otherDimM1OnSameCoords.checkConnectivityFullyDefined();
+ if(getMeshDimension()-1!=otherDimM1OnSameCoords.getMeshDimension())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : invalid mesh dimension of input mesh regarding meshdimesion of this !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> fetchedNodeIds1=otherDimM1OnSameCoords.computeFetchedNodeIds();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s0arr=getCellIdsLyingOnNodes(fetchedNodeIds1->begin(),fetchedNodeIds1->end(),false);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> thisPart=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(s0arr->begin(),s0arr->end(),true));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> descThisPart=DataArrayInt::New(),descIThisPart=DataArrayInt::New(),revDescThisPart=DataArrayInt::New(),revDescIThisPart=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> thisPartConsti=thisPart->buildDescendingConnectivity(descThisPart,descIThisPart,revDescThisPart,revDescIThisPart);
+ const int *revDescThisPartPtr=revDescThisPart->getConstPointer(),*revDescIThisPartPtr=revDescIThisPart->getConstPointer();
+ DataArrayInt *idsOtherInConsti=0;
+ bool b=thisPartConsti->areCellsIncludedIn(&otherDimM1OnSameCoords,2,idsOtherInConsti);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> idsOtherInConstiAuto(idsOtherInConsti);
+ if(!b)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : the given mdim-1 mesh in other is not a constituent of this !");
+ std::set<int> s1;
+ for(const int *idOther=idsOtherInConsti->begin();idOther!=idsOtherInConsti->end();idOther++)
+ s1.insert(revDescThisPartPtr+revDescIThisPartPtr[*idOther],revDescThisPartPtr+revDescIThisPartPtr[*idOther+1]);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s1arr_renum1=DataArrayInt::New(); s1arr_renum1->alloc((int)s1.size(),1); std::copy(s1.begin(),s1.end(),s1arr_renum1->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s1Comparr_renum1=s1arr_renum1->buildComplement(s0arr->getNumberOfTuples());
+ DataArrayInt *neighThisPart=0,*neighIThisPart=0;
+ ComputeNeighborsOfCellsAdv(descThisPart,descIThisPart,revDescThisPart,revDescIThisPart,neighThisPart,neighIThisPart);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> neighThisPartAuto(neighThisPart),neighIThisPartAuto(neighIThisPart);
+ ExtractFromIndexedArrays(s1Comparr_renum1->begin(),s1Comparr_renum1->end(),neighThisPart,neighIThisPart,neighThisPart,neighIThisPart);// reuse of neighThisPart and neighIThisPart
+ neighThisPartAuto=neighThisPart; neighIThisPartAuto=neighIThisPart;
+ RemoveIdsFromIndexedArrays(s1Comparr_renum1->begin(),s1Comparr_renum1->end(),neighThisPart,neighIThisPart);
+ neighThisPartAuto=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s2_tmp=neighIThisPart->deltaShiftIndex();
+ const int li[2]={0,1};
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s2_renum2=s2_tmp->getIdsNotEqualList(li,li+2);
+ s2_renum2->transformWithIndArr(s1Comparr_renum1->begin(),s1Comparr_renum1->end());//s2_renum2==s2_renum1
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s_renum1=DataArrayInt::Aggregate(s2_renum2,s1arr_renum1,0);
+ s_renum1->sort();
+ //
+ cellIdsRk0=s0arr.retn();
+ cellIdsRk1=s_renum1.retn();
+}
+
+/*!
+ * This method computes the skin of \b this. That is to say the consituting meshdim-1 mesh is built and only the boundary subpart is
+ * returned. This subpart of meshdim-1 mesh is built using meshdim-1 cells in it shared only one cell in \b this.
+ *
+ * \return a newly allocated mesh lying on the same coordinates than \b this. The caller has to deal with returned mesh.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::computeSkin() const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> descIndx=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDesc=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDescIndx=DataArrayInt::New();
+ //
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
+ revDesc=0; desc=0; descIndx=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDescIndx2=revDescIndx->deltaShiftIndex();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> part=revDescIndx2->getIdsEqual(1);
+ return static_cast<MEDCouplingUMesh *>(meshDM1->buildPartOfMySelf(part->begin(),part->end(),true));
+}
+
+/*!
+ * Finds nodes lying on the boundary of \a this mesh.
+ * \return DataArrayInt * - a new instance of DataArrayInt holding ids of found
+ * nodes. The caller is to delete this array using decrRef() as it is no
+ * more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is node defined.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_findBoundaryNodes "Here is a C++ example".<br>
+ * \ref py_mcumesh_findBoundaryNodes "Here is a Python example".
+ * \endif
+ */
+DataArrayInt *MEDCouplingUMesh::findBoundaryNodes() const
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> skin=computeSkin();
+ return skin->computeFetchedNodeIds();
+}
+
+MEDCouplingUMesh *MEDCouplingUMesh::buildUnstructured() const
+{
+ incrRef();
+ return const_cast<MEDCouplingUMesh *>(this);
+}
+
+/*!
+ * This method expects that \b this and \b otherDimM1OnSameCoords share the same coordinates array.
+ * otherDimM1OnSameCoords->getMeshDimension() is expected to be equal to this->getMeshDimension()-1.
+ * This method searches for nodes needed to be duplicated. These nodes are nodes fetched by \b otherDimM1OnSameCoords which are not part of the boundary of \b otherDimM1OnSameCoords.
+ * If a node is in the boundary of \b this \b and in the boundary of \b otherDimM1OnSameCoords this node is considerd as needed to be duplicated.
+ * When the set of node ids \b nodeIdsToDuplicate is computed, cell ids in \b this is searched so that their connectivity includes at least 1 node in \b nodeIdsToDuplicate.
+ *
+ * \param [in] otherDimM1OnSameCoords a mesh lying on the same coords than \b this and with a mesh dimension equal to those of \b this minus 1. WARNING this input
+ * parameter is altered during the call.
+ * \param [out] nodeIdsToDuplicate node ids needed to be duplicated following the algorithm explain above.
+ * \param [out] cellIdsNeededToBeRenum cell ids in \b this in which the renumber of nodes should be performed.
+ * \param [out] cellIdsNotModified cell ids int \b this that lies on \b otherDimM1OnSameCoords mesh whose connectivity do \b not need to be modified as it is the case for \b cellIdsNeededToBeRenum.
+ *
+ * \warning This method modifies param \b otherDimM1OnSameCoords (for speed reasons).
+ */
+void MEDCouplingUMesh::findNodesToDuplicate(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayInt *& nodeIdsToDuplicate,
+ DataArrayInt *& cellIdsNeededToBeRenum, DataArrayInt *& cellIdsNotModified) const throw(INTERP_KERNEL::Exception)
+{
+ checkFullyDefined();
+ otherDimM1OnSameCoords.checkFullyDefined();
+ if(getCoords()!=otherDimM1OnSameCoords.getCoords())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate : meshes do not share the same coords array !");
+ if(otherDimM1OnSameCoords.getMeshDimension()!=getMeshDimension()-1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate : the mesh given in other parameter must have this->getMeshDimension()-1 !");
+ DataArrayInt *cellIdsRk0=0,*cellIdsRk1=0;
+ findCellIdsLyingOn(otherDimM1OnSameCoords,cellIdsRk0,cellIdsRk1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellIdsRk0Auto(cellIdsRk0),cellIdsRk1Auto(cellIdsRk1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s0=cellIdsRk1->buildComplement(cellIdsRk0->getNumberOfTuples());
+ s0->transformWithIndArr(cellIdsRk0Auto->begin(),cellIdsRk0Auto->end());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m0Part=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(s0->begin(),s0->end(),true));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s1=m0Part->computeFetchedNodeIds();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s2=otherDimM1OnSameCoords.computeFetchedNodeIds();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> s3=s2->buildSubstraction(s1);
+ cellIdsRk1->transformWithIndArr(cellIdsRk0Auto->begin(),cellIdsRk0Auto->end());
+ //
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m0Part2=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(cellIdsRk1->begin(),cellIdsRk1->end(),true));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc00=DataArrayInt::New(),descI00=DataArrayInt::New(),revDesc00=DataArrayInt::New(),revDescI00=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m01=m0Part2->buildDescendingConnectivity(desc00,descI00,revDesc00,revDescI00);
+ DataArrayInt *idsTmp=0;
+ bool b=m01->areCellsIncludedIn(&otherDimM1OnSameCoords,2,idsTmp);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ids(idsTmp);
+ if(!b)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate : the given mdim-1 mesh in other is not a constituent of this !");
+ MEDCouplingUMesh::RemoveIdsFromIndexedArrays(ids->begin(),ids->end(),desc00,descI00);
+ DataArrayInt *tmp0=0,*tmp1=0;
+ ComputeNeighborsOfCellsAdv(desc00,descI00,revDesc00,revDescI00,tmp0,tmp1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> neigh00(tmp0);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> neighI00(tmp1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellsToModifyConn0_torenum=MEDCouplingUMesh::ComputeSpreadZoneGradually(neigh00,neighI00);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellsToModifyConn1_torenum=cellsToModifyConn0_torenum->buildComplement(neighI00->getNumberOfTuples()-1);
+ cellsToModifyConn0_torenum->transformWithIndArr(cellIdsRk1->begin(),cellIdsRk1->end());
+ cellsToModifyConn1_torenum->transformWithIndArr(cellIdsRk1->begin(),cellIdsRk1->end());
+ //
+ cellIdsNeededToBeRenum=cellsToModifyConn0_torenum.retn();
+ cellIdsNotModified=cellsToModifyConn1_torenum.retn();
+ nodeIdsToDuplicate=s3.retn();
+}
+
+/*!
+ * This method operates a modification of the connectivity and coords in \b this.
+ * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
+ * its ids will be modified to id this->getNumberOfNodes()+std::distance(nodeIdsToDuplicateBg,std::find(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,id)).
+ * More explicitely the renumber array in nodes is not explicitely given in old2new to avoid to build a big array of renumbering whereas typically few node ids needs to be
+ * renumbered. The node id nodeIdsToDuplicateBg[0] will have id this->getNumberOfNodes()+0, node id nodeIdsToDuplicateBg[1] will have id this->getNumberOfNodes()+1,
+ * node id nodeIdsToDuplicateBg[2] will have id this->getNumberOfNodes()+2...
+ *
+ * As a consequence nodal connectivity array length will remain unchanged by this method, and nodal connectivity index array will remain unchanged by this method.
+ *
+ * \param [in] nodeIdsToDuplicateBg begin of node ids (included) to be duplicated in connectivity only
+ * \param [in] nodeIdsToDuplicateEnd end of node ids (excluded) to be duplicated in connectivity only
+ */
+void MEDCouplingUMesh::duplicateNodes(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd)
+{
+ int nbOfNodes=getNumberOfNodes();
+ duplicateNodesInCoords(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd);
+ duplicateNodesInConn(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,nbOfNodes);
+}
+
+/*!
+ * Changes ids of nodes within the nodal connectivity arrays according to a permutation
+ * array in "Old to New" mode. The node coordinates array is \b not changed by this method.
+ * This method is a generalization of shiftNodeNumbersInConn().
+ * \warning This method performs no check of validity of new ids. **Use it with care !**
+ * \param [in] newNodeNumbersO2N - a permutation array, of length \a
+ * this->getNumberOfNodes(), in "Old to New" mode.
+ * See \ref MEDCouplingArrayRenumbering for more info on renumbering modes.
+ * \throw If the nodal connectivity of cells is not defined.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_renumberNodesInConn "Here is a C++ example".<br>
+ * \ref py_mcumesh_renumberNodesInConn "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::renumberNodesInConn(const int *newNodeNumbersO2N)
+{
+ checkConnectivityFullyDefined();
+ int *conn=getNodalConnectivity()->getPointer();
+ const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ for(int i=0;i<nbOfCells;i++)
+ for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
+ {
+ int& node=conn[iconn];
+ if(node>=0)//avoid polyhedron separator
+ {
+ node=newNodeNumbersO2N[node];
+ }
+ }
+ _nodal_connec->declareAsNew();
+ updateTime();
+}
+
+/*!
+ * This method renumbers nodes \b in \b connectivity \b only \b without \b any \b reference \b to \b coords.
+ * This method performs no check on the fact that new coordinate ids are valid. \b Use \b it \b with \b care !
+ * This method is an specialization of \ref ParaMEDMEM::MEDCouplingUMesh::renumberNodesInConn "renumberNodesInConn method".
+ *
+ * \param [in] delta specifies the shift size applied to nodeId in nodal connectivity in \b this.
+ */
+void MEDCouplingUMesh::shiftNodeNumbersInConn(int delta)
+{
+ checkConnectivityFullyDefined();
+ int *conn=getNodalConnectivity()->getPointer();
+ const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ for(int i=0;i<nbOfCells;i++)
+ for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
+ {
+ int& node=conn[iconn];
+ if(node>=0)//avoid polyhedron separator
+ {
+ node+=delta;
+ }
+ }
+ _nodal_connec->declareAsNew();
+ updateTime();
+}
+
+/*!
+ * This method operates a modification of the connectivity in \b this.
+ * Coordinates are \b NOT considered here and will remain unchanged by this method. this->_coords can ever been null for the needs of this method.
+ * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
+ * its ids will be modified to id offset+std::distance(nodeIdsToDuplicateBg,std::find(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,id)).
+ * More explicitely the renumber array in nodes is not explicitely given in old2new to avoid to build a big array of renumbering whereas typically few node ids needs to be
+ * renumbered. The node id nodeIdsToDuplicateBg[0] will have id offset+0, node id nodeIdsToDuplicateBg[1] will have id offset+1,
+ * node id nodeIdsToDuplicateBg[2] will have id offset+2...
+ *
+ * As a consequence nodal connectivity array length will remain unchanged by this method, and nodal connectivity index array will remain unchanged by this method.
+ * As an another consequense after the call of this method \b this can be transiently non cohrent.
+ *
+ * \param [in] nodeIdsToDuplicateBg begin of node ids (included) to be duplicated in connectivity only
+ * \param [in] nodeIdsToDuplicateEnd end of node ids (excluded) to be duplicated in connectivity only
+ * \param [in] offset the offset applied to all node ids in connectivity that are in [ \a nodeIdsToDuplicateBg, \a nodeIdsToDuplicateEnd ).
+ */
+void MEDCouplingUMesh::duplicateNodesInConn(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd, int offset)
+{
+ checkConnectivityFullyDefined();
+ std::map<int,int> m;
+ int val=offset;
+ for(const int *work=nodeIdsToDuplicateBg;work!=nodeIdsToDuplicateEnd;work++,val++)
+ m[*work]=val;
+ int *conn=getNodalConnectivity()->getPointer();
+ const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ for(int i=0;i<nbOfCells;i++)
+ for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
+ {
+ int& node=conn[iconn];
+ if(node>=0)//avoid polyhedron separator
+ {
+ std::map<int,int>::iterator it=m.find(node);
+ if(it!=m.end())
+ node=(*it).second;
+ }
+ }
+ updateTime();
+}
+
+/*!
+ * This method renumbers cells of \a this using the array specified by [old2NewBg;old2NewBg+getNumberOfCells())
+ *
+ * Contrary to MEDCouplingPointSet::renumberNodes, this method makes a permutation without any fuse of cell.
+ * After the call of this method the number of cells remains the same as before.
+ *
+ * If 'check' equals true the method will check that any elements in [ \a old2NewBg; \a old2NewEnd ) is unique ; if not
+ * an INTERP_KERNEL::Exception will be thrown. When 'check' equals true [ \a old2NewBg ; \a old2NewEnd ) is not expected to
+ * be strictly in [0;this->getNumberOfCells()).
+ *
+ * If 'check' equals false the method will not check the content of [ \a old2NewBg ; \a old2NewEnd ).
+ * To avoid any throw of SIGSEGV when 'check' equals false, the elements in [ \a old2NewBg ; \a old2NewEnd ) should be unique and
+ * should be contained in[0;this->getNumberOfCells()).
+ *
+ * \param [in] old2NewBg is expected to be a dynamically allocated pointer of size at least equal to this->getNumberOfCells()
+ */
+void MEDCouplingUMesh::renumberCells(const int *old2NewBg, bool check)
+{
+ checkConnectivityFullyDefined();
+ int nbCells=getNumberOfCells();
+ const int *array=old2NewBg;
+ if(check)
+ array=DataArrayInt::CheckAndPreparePermutation(old2NewBg,old2NewBg+nbCells);
+ //
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2n=DataArrayInt::New(); o2n->useArray(array,false,C_DEALLOC,nbCells,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> n2o=o2n->invertArrayO2N2N2O(nbCells);
+ const int *n2oPtr=n2o->begin();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New();
+ newConn->alloc(_nodal_connec->getNumberOfTuples(),_nodal_connec->getNumberOfComponents());
+ newConn->copyStringInfoFrom(*_nodal_connec);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New();
+ newConnI->alloc(_nodal_connec_index->getNumberOfTuples(),_nodal_connec_index->getNumberOfComponents());
+ newConnI->copyStringInfoFrom(*_nodal_connec_index);
+ //
+ int *newC=newConn->getPointer();
+ int *newCI=newConnI->getPointer();
+ int loc=0;
+ newCI[0]=loc;
+ for(int i=0;i<nbCells;i++)
+ {
+ int pos=n2oPtr[i];
+ int nbOfElts=connI[pos+1]-connI[pos];
+ newC=std::copy(conn+connI[pos],conn+connI[pos+1],newC);
+ loc+=nbOfElts;
+ newCI[i+1]=loc;
+ }
+ //
+ setConnectivity(newConn,newConnI);
+ if(check)
+ free(const_cast<int *>(array));
+}
+
+/*!
+ * Finds cells whose bounding boxes intersect a given bounding box.
+ * \param [in] bbox - an array defining the bounding box via coordinates of its
+ * extremum points in "no interlace" mode, i.e. xMin, xMax, yMin, yMax, zMin,
+ * zMax (if in 3D).
+ * \param [in] eps - a factor used to increase size of the bounding box of cell
+ * before comparing it with \a bbox. This factor is multiplied by the maximal
+ * extent of the bounding box of cell to produce an addition to this bounding box.
+ * \return DataArrayInt * - a new instance of DataArrayInt holding ids for found
+ * cells. The caller is to delete this array using decrRef() as it is no more
+ * needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_getCellsInBoundingBox "Here is a C++ example".<br>
+ * \ref py_mcumesh_getCellsInBoundingBox "Here is a Python example".
+ * \endif
+ */
+DataArrayInt *MEDCouplingUMesh::getCellsInBoundingBox(const double *bbox, double eps) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elems=DataArrayInt::New(); elems->alloc(0,1);
+ if(getMeshDimension()==-1)
+ {
+ elems->pushBackSilent(0);
+ return elems.retn();
+ }
+ int dim=getSpaceDimension();
+ INTERP_KERNEL::AutoPtr<double> elem_bb=new double[2*dim];
+ const int* conn = getNodalConnectivity()->getConstPointer();
+ const int* conn_index= getNodalConnectivityIndex()->getConstPointer();
+ const double* coords = getCoords()->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ for ( int ielem=0; ielem<nbOfCells;ielem++ )
+ {
+ for (int i=0; i<dim; i++)
+ {
+ elem_bb[i*2]=std::numeric_limits<double>::max();
+ elem_bb[i*2+1]=-std::numeric_limits<double>::max();
+ }
+
+ for (int inode=conn_index[ielem]+1; inode<conn_index[ielem+1]; inode++)//+1 due to offset of cell type.
+ {
+ int node= conn[inode];
+ if(node>=0)//avoid polyhedron separator
+ {
+ for (int idim=0; idim<dim; idim++)
+ {
+ if ( coords[node*dim+idim] < elem_bb[idim*2] )
+ {
+ elem_bb[idim*2] = coords[node*dim+idim] ;
+ }
+ if ( coords[node*dim+idim] > elem_bb[idim*2+1] )
+ {
+ elem_bb[idim*2+1] = coords[node*dim+idim] ;
+ }
+ }
+ }
+ }
+ if (intersectsBoundingBox(elem_bb, bbox, dim, eps))
+ elems->pushBackSilent(ielem);
+ }
+ return elems.retn();
+}
+
+/*!
+ * Given a boundary box 'bbox' returns elements 'elems' contained in this 'bbox' or touching 'bbox' (within 'eps' distance).
+ * Warning 'elems' is incremented during the call so if elems is not empty before call returned elements will be
+ * added in 'elems' parameter.
+ */
+DataArrayInt *MEDCouplingUMesh::getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps)
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elems=DataArrayInt::New(); elems->alloc(0,1);
+ if(getMeshDimension()==-1)
+ {
+ elems->pushBackSilent(0);
+ return elems.retn();
+ }
+ int dim=getSpaceDimension();
+ INTERP_KERNEL::AutoPtr<double> elem_bb=new double[2*dim];
+ const int* conn = getNodalConnectivity()->getConstPointer();
+ const int* conn_index= getNodalConnectivityIndex()->getConstPointer();
+ const double* coords = getCoords()->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ for ( int ielem=0; ielem<nbOfCells;ielem++ )
+ {
+ for (int i=0; i<dim; i++)
+ {
+ elem_bb[i*2]=std::numeric_limits<double>::max();
+ elem_bb[i*2+1]=-std::numeric_limits<double>::max();
+ }
+
+ for (int inode=conn_index[ielem]+1; inode<conn_index[ielem+1]; inode++)//+1 due to offset of cell type.
+ {
+ int node= conn[inode];
+ if(node>=0)//avoid polyhedron separator
+ {
+ for (int idim=0; idim<dim; idim++)
+ {
+ if ( coords[node*dim+idim] < elem_bb[idim*2] )
+ {
+ elem_bb[idim*2] = coords[node*dim+idim] ;
+ }
+ if ( coords[node*dim+idim] > elem_bb[idim*2+1] )
+ {
+ elem_bb[idim*2+1] = coords[node*dim+idim] ;
+ }
+ }
+ }
+ }
+ if(intersectsBoundingBox(bbox, elem_bb, dim, eps))
+ elems->pushBackSilent(ielem);
+ }
+ return elems.retn();
+}
+
+/*!
+ * Returns a type of a cell by its id.
+ * \param [in] cellId - the id of the cell of interest.
+ * \return INTERP_KERNEL::NormalizedCellType - enumeration item describing the cell type.
+ * \throw If \a cellId is invalid. Valid range is [0, \a this->getNumberOfCells() ).
+ */
+INTERP_KERNEL::NormalizedCellType MEDCouplingUMesh::getTypeOfCell(int cellId) const
+{
+ const int *ptI=_nodal_connec_index->getConstPointer();
+ const int *pt=_nodal_connec->getConstPointer();
+ if(cellId>=0 && cellId<(int)_nodal_connec_index->getNbOfElems()-1)
+ return (INTERP_KERNEL::NormalizedCellType) pt[ptI[cellId]];
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::getTypeOfCell : Requesting type of cell #" << cellId << " but it should be in [0," << _nodal_connec_index->getNbOfElems()-1 << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+}
+
+/*!
+ * This method returns a newly allocated array containing cell ids (ascendingly sorted) whose geometric type are equal to type.
+ * This method does not throw exception if geometric type \a type is not in \a this.
+ * This method throws an INTERP_KERNEL::Exception if meshdimension of \b this is not equal to those of \b type.
+ * The coordinates array is not considered here.
+ *
+ * \param [in] type the geometric type
+ * \return cell ids in this having geometric type \a type.
+ */
+DataArrayInt *MEDCouplingUMesh::giveCellsWithType(INTERP_KERNEL::NormalizedCellType type) const
+{
+
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ ret->alloc(0,1);
+ checkConnectivityFullyDefined();
+ int nbCells=getNumberOfCells();
+ int mdim=getMeshDimension();
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
+ if(mdim!=(int)cm.getDimension())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::giveCellsWithType : Mismatch between mesh dimension and dimension of the cell !");
+ const int *ptI=_nodal_connec_index->getConstPointer();
+ const int *pt=_nodal_connec->getConstPointer();
+ for(int i=0;i<nbCells;i++)
+ {
+ if((INTERP_KERNEL::NormalizedCellType)pt[ptI[i]]==type)
+ ret->pushBackSilent(i);
+ }
+ return ret.retn();
+}
+
+/*!
+ * Returns nb of cells having the geometric type \a type. No throw if no cells in \a this has the geometric type \a type.
+ */
+int MEDCouplingUMesh::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const
+{
+ const int *ptI=_nodal_connec_index->getConstPointer();
+ const int *pt=_nodal_connec->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ int ret=0;
+ for(int i=0;i<nbOfCells;i++)
+ if((INTERP_KERNEL::NormalizedCellType) pt[ptI[i]]==type)
+ ret++;
+ return ret;
+}
+
+/*!
+ * Returns the nodal connectivity of a given cell.
+ * The separator of faces within polyhedron connectivity (-1) is not returned, thus
+ * all returned node ids can be used in getCoordinatesOfNode().
+ * \param [in] cellId - an id of the cell of interest.
+ * \param [in,out] conn - a vector where the node ids are appended. It is not
+ * cleared before the appending.
+ * \throw If \a cellId is invalid. Valid range is [0, \a this->getNumberOfCells() ).
+ */
+void MEDCouplingUMesh::getNodeIdsOfCell(int cellId, std::vector<int>& conn) const
+{
+ const int *ptI=_nodal_connec_index->getConstPointer();
+ const int *pt=_nodal_connec->getConstPointer();
+ for(const int *w=pt+ptI[cellId]+1;w!=pt+ptI[cellId+1];w++)
+ if(*w>=0)
+ conn.push_back(*w);
+}
+
+std::string MEDCouplingUMesh::simpleRepr() const
+{
+ static const char msg0[]="No coordinates specified !";
+ std::ostringstream ret;
+ ret << "Unstructured mesh with name : \"" << getName() << "\"\n";
+ ret << "Description of mesh : \"" << getDescription() << "\"\n";
+ int tmpp1,tmpp2;
+ double tt=getTime(tmpp1,tmpp2);
+ ret << "Time attached to the mesh [unit] : " << tt << " [" << getTimeUnit() << "]\n";
+ ret << "Iteration : " << tmpp1 << " Order : " << tmpp2 << "\n";
+ if(_mesh_dim>=-1)
+ { ret << "Mesh dimension : " << _mesh_dim << "\nSpace dimension : "; }
+ else
+ { ret << " Mesh dimension has not been set or is invalid !"; }
+ if(_coords!=0)
+ {
+ const int spaceDim=getSpaceDimension();
+ ret << spaceDim << "\nInfo attached on space dimension : ";
+ for(int i=0;i<spaceDim;i++)
+ ret << "\"" << _coords->getInfoOnComponent(i) << "\" ";
+ ret << "\n";
+ }
+ else
+ ret << msg0 << "\n";
+ ret << "Number of nodes : ";
+ if(_coords!=0)
+ ret << getNumberOfNodes() << "\n";
+ else
+ ret << msg0 << "\n";
+ ret << "Number of cells : ";
+ if(_nodal_connec!=0 && _nodal_connec_index!=0)
+ ret << getNumberOfCells() << "\n";
+ else
+ ret << "No connectivity specified !" << "\n";
+ ret << "Cell types present : ";
+ for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter);
+ ret << cm.getRepr() << " ";
+ }
+ ret << "\n";
+ return ret.str();
+}
+
+std::string MEDCouplingUMesh::advancedRepr() const
+{
+ std::ostringstream ret;
+ ret << simpleRepr();
+ ret << "\nCoordinates array : \n___________________\n\n";
+ if(_coords)
+ _coords->reprWithoutNameStream(ret);
+ else
+ ret << "No array set !\n";
+ ret << "\n\nConnectivity arrays : \n_____________________\n\n";
+ reprConnectivityOfThisLL(ret);
+ return ret.str();
+}
+
+/*!
+ * This method returns a C++ code that is a dump of \a this.
+ * This method will throw if this is not fully defined.
+ */
+std::string MEDCouplingUMesh::cppRepr() const
+{
+ static const char coordsName[]="coords";
+ static const char connName[]="conn";
+ static const char connIName[]="connI";
+ checkFullyDefined();
+ std::ostringstream ret; ret << "// coordinates" << std::endl;
+ _coords->reprCppStream(coordsName,ret); ret << std::endl << "// connectivity" << std::endl;
+ _nodal_connec->reprCppStream(connName,ret); ret << std::endl;
+ _nodal_connec_index->reprCppStream(connIName,ret); ret << std::endl;
+ ret << "MEDCouplingUMesh *mesh=MEDCouplingUMesh::New(\"" << getName() << "\"," << getMeshDimension() << ");" << std::endl;
+ ret << "mesh->setCoords(" << coordsName << ");" << std::endl;
+ ret << "mesh->setConnectivity(" << connName << "," << connIName << ",true);" << std::endl;
+ ret << coordsName << "->decrRef(); " << connName << "->decrRef(); " << connIName << "->decrRef();" << std::endl;
+ return ret.str();
+}
+
+std::string MEDCouplingUMesh::reprConnectivityOfThis() const
+{
+ std::ostringstream ret;
+ reprConnectivityOfThisLL(ret);
+ return ret.str();
+}
+
+/*!
+ * This method builds a newly allocated instance (with the same name than \a this) that the caller has the responsability to deal with.
+ * This method returns an instance with all arrays allocated (connectivity, connectivity index, coordinates)
+ * but with length of these arrays set to 0. It allows to define an "empty" mesh (with nor cells nor nodes but compliant with
+ * some algos).
+ *
+ * This method expects that \a this has a mesh dimension set and higher or equal to 0. If not an exception will be thrown.
+ * This method analyzes the 3 arrays of \a this. For each the following behaviour is done : if the array is null a newly one is created
+ * with number of tuples set to 0, if not the array is taken as this in the returned instance.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::buildSetInstanceFromThis(int spaceDim) const
+{
+ int mdim=getMeshDimension();
+ if(mdim<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSetInstanceFromThis : invalid mesh dimension ! Should be >= 0 !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New(getName(),mdim);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp1,tmp2;
+ bool needToCpyCT=true;
+ if(!_nodal_connec)
+ {
+ tmp1=DataArrayInt::New(); tmp1->alloc(0,1);
+ needToCpyCT=false;
+ }
+ else
+ {
+ tmp1=_nodal_connec;
+ tmp1->incrRef();
+ }
+ if(!_nodal_connec_index)
+ {
+ tmp2=DataArrayInt::New(); tmp2->alloc(1,1); tmp2->setIJ(0,0,0);
+ needToCpyCT=false;
+ }
+ else
+ {
+ tmp2=_nodal_connec_index;
+ tmp2->incrRef();
+ }
+ ret->setConnectivity(tmp1,tmp2,false);
+ if(needToCpyCT)
+ ret->_types=_types;
+ if(!_coords)
+ {
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coords=DataArrayDouble::New(); coords->alloc(0,spaceDim);
+ ret->setCoords(coords);
+ }
+ else
+ ret->setCoords(_coords);
+ return ret.retn();
+}
+
+void MEDCouplingUMesh::reprConnectivityOfThisLL(std::ostringstream& stream) const
+{
+ if(_nodal_connec!=0 && _nodal_connec_index!=0)
+ {
+ int nbOfCells=getNumberOfCells();
+ const int *c=_nodal_connec->getConstPointer();
+ const int *ci=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)c[ci[i]]);
+ stream << "Cell #" << i << " " << cm.getRepr() << " : ";
+ std::copy(c+ci[i]+1,c+ci[i+1],std::ostream_iterator<int>(stream," "));
+ stream << "\n";
+ }
+ }
+ else
+ stream << "Connectivity not defined !\n";
+}
+
+int MEDCouplingUMesh::getNumberOfNodesInCell(int cellId) const
+{
+ const int *ptI=_nodal_connec_index->getConstPointer();
+ const int *pt=_nodal_connec->getConstPointer();
+ if(pt[ptI[cellId]]!=INTERP_KERNEL::NORM_POLYHED)
+ return ptI[cellId+1]-ptI[cellId]-1;
+ else
+ return (int)std::count_if(pt+ptI[cellId]+1,pt+ptI[cellId+1],std::bind2nd(std::not_equal_to<int>(),-1));
+}
+
+/*!
+ * Returns types of cells of the specified part of \a this mesh.
+ * This method avoids computing sub-mesh explicitely to get its types.
+ * \param [in] begin - an array of cell ids of interest.
+ * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
+ * \return std::set<INTERP_KERNEL::NormalizedCellType> - a set of enumeration items
+ * describing the cell types.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \sa getAllGeoTypes()
+ */
+std::set<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getTypesOfPart(const int *begin, const int *end) const
+{
+ checkFullyDefined();
+ std::set<INTERP_KERNEL::NormalizedCellType> ret;
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ for(const int *w=begin;w!=end;w++)
+ ret.insert((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*w]]);
+ return ret;
+}
+
+/*!
+ * Defines the nodal connectivity using given connectivity arrays. Optionally updates
+ * a set of types of cells constituting \a this mesh.
+ * This method is for advanced users having prepared their connectivity before. For
+ * more info on using this method see \ref MEDCouplingUMeshAdvBuild.
+ * \param [in] conn - the nodal connectivity array.
+ * \param [in] connIndex - the nodal connectivity index array.
+ * \param [in] isComputingTypes - if \c true, the set of types constituting \a this
+ * mesh is updated.
+ */
+void MEDCouplingUMesh::setConnectivity(DataArrayInt *conn, DataArrayInt *connIndex, bool isComputingTypes)
+{
+ DataArrayInt::SetArrayIn(conn,_nodal_connec);
+ DataArrayInt::SetArrayIn(connIndex,_nodal_connec_index);
+ if(isComputingTypes)
+ computeTypes();
+ declareAsNew();
+}
+
+/*!
+ * Copy constructor. If 'deepCpy' is false \a this is a shallow copy of other.
+ * If 'deeCpy' is true all arrays (coordinates and connectivities) are deeply copied.
+ */
+MEDCouplingUMesh::MEDCouplingUMesh(const MEDCouplingUMesh& other, bool deepCopy):MEDCouplingPointSet(other,deepCopy),_mesh_dim(other._mesh_dim),
+ _nodal_connec(0),_nodal_connec_index(0),
+ _types(other._types)
+{
+ if(other._nodal_connec)
+ _nodal_connec=other._nodal_connec->performCpy(deepCopy);
+ if(other._nodal_connec_index)
+ _nodal_connec_index=other._nodal_connec_index->performCpy(deepCopy);
+}
+
+MEDCouplingUMesh::~MEDCouplingUMesh()
+{
+ if(_nodal_connec)
+ _nodal_connec->decrRef();
+ if(_nodal_connec_index)
+ _nodal_connec_index->decrRef();
+}
+
+/*!
+ * Recomputes a set of cell types of \a this mesh. For more info see
+ * \ref MEDCouplingUMeshNodalConnectivity.
+ */
+void MEDCouplingUMesh::computeTypes()
+{
+ if(_nodal_connec && _nodal_connec_index)
+ {
+ _types.clear();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ int nbOfElem=_nodal_connec_index->getNbOfElems()-1;
+ if (nbOfElem > 0)
+ for(const int *pt=connIndex;pt !=connIndex+nbOfElem;pt++)
+ _types.insert((INTERP_KERNEL::NormalizedCellType)conn[*pt]);
+ }
+}
+
+/*!
+ * This method checks that all arrays are set. If yes nothing done if no an exception is thrown.
+ */
+void MEDCouplingUMesh::checkFullyDefined() const
+{
+ if(!_nodal_connec_index || !_nodal_connec || !_coords)
+ throw INTERP_KERNEL::Exception("Reverse nodal connectivity computation requires full connectivity and coordinates set in unstructured mesh.");
+}
+
+/*!
+ * This method checks that all connectivity arrays are set. If yes nothing done if no an exception is thrown.
+ */
+void MEDCouplingUMesh::checkConnectivityFullyDefined() const
+{
+ if(!_nodal_connec_index || !_nodal_connec)
+ throw INTERP_KERNEL::Exception("Reverse nodal connectivity computation requires full connectivity set in unstructured mesh.");
+}
+
+/*!
+ * Returns a number of cells constituting \a this mesh.
+ * \return int - the number of cells in \a this mesh.
+ * \throw If the nodal connectivity of cells is not defined.
+ */
+int MEDCouplingUMesh::getNumberOfCells() const
+{
+ if(_nodal_connec_index)
+ return _nodal_connec_index->getNumberOfTuples()-1;
+ else
+ if(_mesh_dim==-1)
+ return 1;
+ else
+ throw INTERP_KERNEL::Exception("Unable to get number of cells because no connectivity specified !");
+}
+
+/*!
+ * Returns a dimension of \a this mesh, i.e. a dimension of cells constituting \a this
+ * mesh. For more info see \ref MEDCouplingMeshesPage.
+ * \return int - the dimension of \a this mesh.
+ * \throw If the mesh dimension is not defined using setMeshDimension().
+ */
+int MEDCouplingUMesh::getMeshDimension() const
+{
+ if(_mesh_dim<-1)
+ throw INTERP_KERNEL::Exception("No mesh dimension specified !");
+ return _mesh_dim;
+}
+
+/*!
+ * Returns a length of the nodal connectivity array.
+ * This method is for test reason. Normally the integer returned is not useable by
+ * user. For more info see \ref MEDCouplingUMeshNodalConnectivity.
+ * \return int - the length of the nodal connectivity array.
+ */
+int MEDCouplingUMesh::getMeshLength() const
+{
+ return _nodal_connec->getNbOfElems();
+}
+
+/*!
+ * First step of serialization process. Used by ParaMEDMEM and MEDCouplingCorba to transfert data between process.
+ */
+void MEDCouplingUMesh::getTinySerializationInformation(std::vector<double>& tinyInfoD, std::vector<int>& tinyInfo, std::vector<std::string>& littleStrings) const
+{
+ MEDCouplingPointSet::getTinySerializationInformation(tinyInfoD,tinyInfo,littleStrings);
+ tinyInfo.push_back(getMeshDimension());
+ tinyInfo.push_back(getNumberOfCells());
+ if(_nodal_connec)
+ tinyInfo.push_back(getMeshLength());
+ else
+ tinyInfo.push_back(-1);
+}
+
+/*!
+ * First step of unserialization process.
+ */
+bool MEDCouplingUMesh::isEmptyMesh(const std::vector<int>& tinyInfo) const
+{
+ return tinyInfo[6]<=0;
+}
+
+/*!
+ * Second step of serialization process.
+ * \param tinyInfo must be equal to the result given by getTinySerializationInformation method.
+ */
+void MEDCouplingUMesh::resizeForUnserialization(const std::vector<int>& tinyInfo, DataArrayInt *a1, DataArrayDouble *a2, std::vector<std::string>& littleStrings) const
+{
+ MEDCouplingPointSet::resizeForUnserialization(tinyInfo,a1,a2,littleStrings);
+ if(tinyInfo[5]!=-1)
+ a1->alloc(tinyInfo[7]+tinyInfo[6]+1,1);
+}
+
+/*!
+ * Third and final step of serialization process.
+ */
+void MEDCouplingUMesh::serialize(DataArrayInt *&a1, DataArrayDouble *&a2) const
+{
+ MEDCouplingPointSet::serialize(a1,a2);
+ if(getMeshDimension()>-1)
+ {
+ a1=DataArrayInt::New();
+ a1->alloc(getMeshLength()+getNumberOfCells()+1,1);
+ int *ptA1=a1->getPointer();
+ const int *conn=getNodalConnectivity()->getConstPointer();
+ const int *index=getNodalConnectivityIndex()->getConstPointer();
+ ptA1=std::copy(index,index+getNumberOfCells()+1,ptA1);
+ std::copy(conn,conn+getMeshLength(),ptA1);
+ }
+ else
+ a1=0;
+}
+
+/*!
+ * Second and final unserialization process.
+ * \param tinyInfo must be equal to the result given by getTinySerializationInformation method.
+ */
+void MEDCouplingUMesh::unserialization(const std::vector<double>& tinyInfoD, const std::vector<int>& tinyInfo, const DataArrayInt *a1, DataArrayDouble *a2, const std::vector<std::string>& littleStrings)
+{
+ MEDCouplingPointSet::unserialization(tinyInfoD,tinyInfo,a1,a2,littleStrings);
+ setMeshDimension(tinyInfo[5]);
+ if(tinyInfo[7]!=-1)
+ {
+ // Connectivity
+ const int *recvBuffer=a1->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> myConnecIndex=DataArrayInt::New();
+ myConnecIndex->alloc(tinyInfo[6]+1,1);
+ std::copy(recvBuffer,recvBuffer+tinyInfo[6]+1,myConnecIndex->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> myConnec=DataArrayInt::New();
+ myConnec->alloc(tinyInfo[7],1);
+ std::copy(recvBuffer+tinyInfo[6]+1,recvBuffer+tinyInfo[6]+1+tinyInfo[7],myConnec->getPointer());
+ setConnectivity(myConnec, myConnecIndex);
+ }
+}
+
+/*!
+ * This is the low algorithm of MEDCouplingUMesh::buildPartOfMySelf2.
+ * CellIds are given using range specified by a start an end and step.
+ */
+MEDCouplingPointSet *MEDCouplingUMesh::buildPartOfMySelfKeepCoords2(int start, int end, int step) const
+{
+ checkFullyDefined();
+ int ncell=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New();
+ ret->_mesh_dim=_mesh_dim;
+ ret->setCoords(_coords);
+ int newNbOfCells=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::buildPartOfMySelfKeepCoords2 : ");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New(); newConnI->alloc(newNbOfCells+1,1);
+ int *newConnIPtr=newConnI->getPointer(); *newConnIPtr=0;
+ int work=start;
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<newNbOfCells;i++,newConnIPtr++,work+=step)
+ {
+ if(work>=0 && work<ncell)
+ {
+ newConnIPtr[1]=newConnIPtr[0]+connIndex[work+1]-connIndex[work];
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::buildPartOfMySelfKeepCoords2 : On pos #" << i << " input cell id =" << work << " should be in [0," << ncell << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New(); newConn->alloc(newConnIPtr[0],1);
+ int *newConnPtr=newConn->getPointer();
+ std::set<INTERP_KERNEL::NormalizedCellType> types;
+ work=start;
+ for(int i=0;i<newNbOfCells;i++,newConnIPtr++,work+=step)
+ {
+ types.insert((INTERP_KERNEL::NormalizedCellType)conn[connIndex[work]]);
+ newConnPtr=std::copy(conn+connIndex[work],conn+connIndex[work+1],newConnPtr);
+ }
+ ret->setConnectivity(newConn,newConnI,false);
+ ret->_types=types;
+ ret->copyTinyInfoFrom(this);
+ return ret.retn();
+}
+
+/*!
+ * This is the low algorithm of MEDCouplingUMesh::buildPartOfMySelf.
+ * Keeps from \a this only cells which constituing point id are in the ids specified by [ \a begin,\a end ).
+ * The return newly allocated mesh will share the same coordinates as \a this.
+ */
+MEDCouplingPointSet *MEDCouplingUMesh::buildPartOfMySelfKeepCoords(const int *begin, const int *end) const
+{
+ checkConnectivityFullyDefined();
+ int ncell=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New();
+ ret->_mesh_dim=_mesh_dim;
+ ret->setCoords(_coords);
+ std::size_t nbOfElemsRet=std::distance(begin,end);
+ int *connIndexRet=(int *)malloc((nbOfElemsRet+1)*sizeof(int));
+ connIndexRet[0]=0;
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ int newNbring=0;
+ for(const int *work=begin;work!=end;work++,newNbring++)
+ {
+ if(*work>=0 && *work<ncell)
+ connIndexRet[newNbring+1]=connIndexRet[newNbring]+connIndex[*work+1]-connIndex[*work];
+ else
+ {
+ free(connIndexRet);
+ std::ostringstream oss; oss << "MEDCouplingUMesh::buildPartOfMySelfKeepCoords : On pos #" << std::distance(begin,work) << " input cell id =" << *work << " should be in [0," << ncell << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ int *connRet=(int *)malloc(connIndexRet[nbOfElemsRet]*sizeof(int));
+ int *connRetWork=connRet;
+ std::set<INTERP_KERNEL::NormalizedCellType> types;
+ for(const int *work=begin;work!=end;work++)
+ {
+ types.insert((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*work]]);
+ connRetWork=std::copy(conn+connIndex[*work],conn+connIndex[*work+1],connRetWork);
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> connRetArr=DataArrayInt::New();
+ connRetArr->useArray(connRet,true,C_DEALLOC,connIndexRet[nbOfElemsRet],1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> connIndexRetArr=DataArrayInt::New();
+ connIndexRetArr->useArray(connIndexRet,true,C_DEALLOC,(int)nbOfElemsRet+1,1);
+ ret->setConnectivity(connRetArr,connIndexRetArr,false);
+ ret->_types=types;
+ ret->copyTinyInfoFrom(this);
+ return ret.retn();
+}
+
+/*!
+ * Returns a new MEDCouplingFieldDouble containing volumes of cells constituting \a this
+ * mesh.<br>
+ * For 1D cells, the returned field contains lengths.<br>
+ * For 2D cells, the returned field contains areas.<br>
+ * For 3D cells, the returned field contains volumes.
+ * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
+ * orientation, i.e. the volume is always positive.
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on cells
+ * and one time . The caller is to delete this field using decrRef() as it is no
+ * more needed.
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::getMeasureField(bool isAbs) const
+{
+ std::string name="MeasureOfMesh_";
+ name+=getName();
+ int nbelem=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> field=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
+ field->setName(name);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> array=DataArrayDouble::New();
+ array->alloc(nbelem,1);
+ double *area_vol=array->getPointer();
+ field->setArray(array) ; array=0;
+ field->setMesh(const_cast<MEDCouplingUMesh *>(this));
+ field->synchronizeTimeWithMesh();
+ if(getMeshDimension()!=-1)
+ {
+ int ipt;
+ INTERP_KERNEL::NormalizedCellType type;
+ int dim_space=getSpaceDimension();
+ const double *coords=getCoords()->getConstPointer();
+ const int *connec=getNodalConnectivity()->getConstPointer();
+ const int *connec_index=getNodalConnectivityIndex()->getConstPointer();
+ for(int iel=0;iel<nbelem;iel++)
+ {
+ ipt=connec_index[iel];
+ type=(INTERP_KERNEL::NormalizedCellType)connec[ipt];
+ area_vol[iel]=INTERP_KERNEL::computeVolSurfOfCell2<int,INTERP_KERNEL::ALL_C_MODE>(type,connec+ipt+1,connec_index[iel+1]-ipt-1,coords,dim_space);
+ }
+ if(isAbs)
+ std::transform(area_vol,area_vol+nbelem,area_vol,std::ptr_fun<double,double>(fabs));
+ }
+ else
+ {
+ area_vol[0]=std::numeric_limits<double>::max();
+ }
+ return field.retn();
+}
+
+/*!
+ * Returns a new DataArrayDouble containing volumes of specified cells of \a this
+ * mesh.<br>
+ * For 1D cells, the returned array contains lengths.<br>
+ * For 2D cells, the returned array contains areas.<br>
+ * For 3D cells, the returned array contains volumes.
+ * This method avoids building explicitly a part of \a this mesh to perform the work.
+ * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
+ * orientation, i.e. the volume is always positive.
+ * \param [in] begin - an array of cell ids of interest.
+ * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
+ * \return DataArrayDouble * - a new instance of DataArrayDouble. The caller is to
+ * delete this array using decrRef() as it is no more needed.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_getPartMeasureField "Here is a C++ example".<br>
+ * \ref py_mcumesh_getPartMeasureField "Here is a Python example".
+ * \endif
+ * \sa getMeasureField()
+ */
+DataArrayDouble *MEDCouplingUMesh::getPartMeasureField(bool isAbs, const int *begin, const int *end) const
+{
+ std::string name="PartMeasureOfMesh_";
+ name+=getName();
+ int nbelem=(int)std::distance(begin,end);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> array=DataArrayDouble::New();
+ array->setName(name);
+ array->alloc(nbelem,1);
+ double *area_vol=array->getPointer();
+ if(getMeshDimension()!=-1)
+ {
+ int ipt;
+ INTERP_KERNEL::NormalizedCellType type;
+ int dim_space=getSpaceDimension();
+ const double *coords=getCoords()->getConstPointer();
+ const int *connec=getNodalConnectivity()->getConstPointer();
+ const int *connec_index=getNodalConnectivityIndex()->getConstPointer();
+ for(const int *iel=begin;iel!=end;iel++)
+ {
+ ipt=connec_index[*iel];
+ type=(INTERP_KERNEL::NormalizedCellType)connec[ipt];
+ *area_vol++=INTERP_KERNEL::computeVolSurfOfCell2<int,INTERP_KERNEL::ALL_C_MODE>(type,connec+ipt+1,connec_index[*iel+1]-ipt-1,coords,dim_space);
+ }
+ if(isAbs)
+ std::transform(array->getPointer(),area_vol,array->getPointer(),std::ptr_fun<double,double>(fabs));
+ }
+ else
+ {
+ area_vol[0]=std::numeric_limits<double>::max();
+ }
+ return array.retn();
+}
+
+/*!
+ * Returns a new MEDCouplingFieldDouble containing volumes of cells of a dual mesh of
+ * \a this one. The returned field contains the dual cell volume for each corresponding
+ * node in \a this mesh. In other words, the field returns the getMeasureField() of
+ * the dual mesh in P1 sens of \a this.<br>
+ * For 1D cells, the returned field contains lengths.<br>
+ * For 2D cells, the returned field contains areas.<br>
+ * For 3D cells, the returned field contains volumes.
+ * This method is useful to check "P1*" conservative interpolators.
+ * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
+ * orientation, i.e. the volume is always positive.
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
+ * nodes and one time. The caller is to delete this array using decrRef() as
+ * it is no more needed.
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::getMeasureFieldOnNode(bool isAbs) const
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> tmp=getMeasureField(isAbs);
+ std::string name="MeasureOnNodeOfMesh_";
+ name+=getName();
+ int nbNodes=getNumberOfNodes();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_NODES);
+ double cst=1./((double)getMeshDimension()+1.);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> array=DataArrayDouble::New();
+ array->alloc(nbNodes,1);
+ double *valsToFill=array->getPointer();
+ std::fill(valsToFill,valsToFill+nbNodes,0.);
+ const double *values=tmp->getArray()->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> daInd=DataArrayInt::New();
+ getReverseNodalConnectivity(da,daInd);
+ const int *daPtr=da->getConstPointer();
+ const int *daIPtr=daInd->getConstPointer();
+ for(int i=0;i<nbNodes;i++)
+ for(const int *cell=daPtr+daIPtr[i];cell!=daPtr+daIPtr[i+1];cell++)
+ valsToFill[i]+=cst*values[*cell];
+ ret->setMesh(this);
+ ret->setArray(array);
+ return ret.retn();
+}
+
+/*!
+ * Returns a new MEDCouplingFieldDouble holding normal vectors to cells of \a this
+ * mesh. The returned normal vectors to each cell have a norm2 equal to 1.
+ * The computed vectors have <em> this->getMeshDimension()+1 </em> components
+ * and are normalized.
+ * <br> \a this can be either
+ * - a 2D mesh in 2D or 3D space or
+ * - an 1D mesh in 2D space.
+ *
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
+ * cells and one time. The caller is to delete this field using decrRef() as
+ * it is no more needed.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If the coordinates array is not set.
+ * \throw If the mesh dimension is not set.
+ * \throw If the mesh and space dimension is not as specified above.
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::buildOrthogonalField() const
+{
+ if((getMeshDimension()!=2) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
+ throw INTERP_KERNEL::Exception("Expected a umesh with ( meshDim == 2 spaceDim == 2 or 3 ) or ( meshDim == 1 spaceDim == 2 ) !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> array=DataArrayDouble::New();
+ int nbOfCells=getNumberOfCells();
+ int nbComp=getMeshDimension()+1;
+ array->alloc(nbOfCells,nbComp);
+ double *vals=array->getPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const int *conn=_nodal_connec->getConstPointer();
+ const double *coords=_coords->getConstPointer();
+ if(getMeshDimension()==2)
+ {
+ if(getSpaceDimension()==3)
+ {
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> loc=getBarycenterAndOwner();
+ const double *locPtr=loc->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,vals+=3)
+ {
+ int offset=connI[i];
+ INTERP_KERNEL::crossprod<3>(locPtr+3*i,coords+3*conn[offset+1],coords+3*conn[offset+2],vals);
+ double n=INTERP_KERNEL::norm<3>(vals);
+ std::transform(vals,vals+3,vals,std::bind2nd(std::multiplies<double>(),1./n));
+ }
+ }
+ else
+ {
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> isAbs=getMeasureField(false);
+ const double *isAbsPtr=isAbs->getArray()->begin();
+ for(int i=0;i<nbOfCells;i++,isAbsPtr++)
+ { vals[3*i]=0.; vals[3*i+1]=0.; vals[3*i+2]=*isAbsPtr>0.?1.:-1.; }
+ }
+ }
+ else//meshdimension==1
+ {
+ double tmp[2];
+ for(int i=0;i<nbOfCells;i++)
+ {
+ int offset=connI[i];
+ std::transform(coords+2*conn[offset+2],coords+2*conn[offset+2]+2,coords+2*conn[offset+1],tmp,std::minus<double>());
+ double n=INTERP_KERNEL::norm<2>(tmp);
+ std::transform(tmp,tmp+2,tmp,std::bind2nd(std::multiplies<double>(),1./n));
+ *vals++=-tmp[1];
+ *vals++=tmp[0];
+ }
+ }
+ ret->setArray(array);
+ ret->setMesh(this);
+ ret->synchronizeTimeWithSupport();
+ return ret.retn();
+}
+
+/*!
+ * Returns a new MEDCouplingFieldDouble holding normal vectors to specified cells of
+ * \a this mesh. The computed vectors have <em> this->getMeshDimension()+1 </em> components
+ * and are normalized.
+ * <br> \a this can be either
+ * - a 2D mesh in 2D or 3D space or
+ * - an 1D mesh in 2D space.
+ *
+ * This method avoids building explicitly a part of \a this mesh to perform the work.
+ * \param [in] begin - an array of cell ids of interest.
+ * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
+ * cells and one time. The caller is to delete this field using decrRef() as
+ * it is no more needed.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If the coordinates array is not set.
+ * \throw If the mesh dimension is not set.
+ * \throw If the mesh and space dimension is not as specified above.
+ * \sa buildOrthogonalField()
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_buildPartOrthogonalField "Here is a C++ example".<br>
+ * \ref py_mcumesh_buildPartOrthogonalField "Here is a Python example".
+ * \endif
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::buildPartOrthogonalField(const int *begin, const int *end) const
+{
+ if((getMeshDimension()!=2) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
+ throw INTERP_KERNEL::Exception("Expected a umesh with ( meshDim == 2 spaceDim == 2 or 3 ) or ( meshDim == 1 spaceDim == 2 ) !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> array=DataArrayDouble::New();
+ std::size_t nbelems=std::distance(begin,end);
+ int nbComp=getMeshDimension()+1;
+ array->alloc((int)nbelems,nbComp);
+ double *vals=array->getPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const int *conn=_nodal_connec->getConstPointer();
+ const double *coords=_coords->getConstPointer();
+ if(getMeshDimension()==2)
+ {
+ if(getSpaceDimension()==3)
+ {
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> loc=getPartBarycenterAndOwner(begin,end);
+ const double *locPtr=loc->getConstPointer();
+ for(const int *i=begin;i!=end;i++,vals+=3,locPtr+=3)
+ {
+ int offset=connI[*i];
+ INTERP_KERNEL::crossprod<3>(locPtr,coords+3*conn[offset+1],coords+3*conn[offset+2],vals);
+ double n=INTERP_KERNEL::norm<3>(vals);
+ std::transform(vals,vals+3,vals,std::bind2nd(std::multiplies<double>(),1./n));
+ }
+ }
+ else
+ {
+ for(std::size_t i=0;i<nbelems;i++)
+ { vals[3*i]=0.; vals[3*i+1]=0.; vals[3*i+2]=1.; }
+ }
+ }
+ else//meshdimension==1
+ {
+ double tmp[2];
+ for(const int *i=begin;i!=end;i++)
+ {
+ int offset=connI[*i];
+ std::transform(coords+2*conn[offset+2],coords+2*conn[offset+2]+2,coords+2*conn[offset+1],tmp,std::minus<double>());
+ double n=INTERP_KERNEL::norm<2>(tmp);
+ std::transform(tmp,tmp+2,tmp,std::bind2nd(std::multiplies<double>(),1./n));
+ *vals++=-tmp[1];
+ *vals++=tmp[0];
+ }
+ }
+ ret->setArray(array);
+ ret->setMesh(this);
+ ret->synchronizeTimeWithSupport();
+ return ret.retn();
+}
+
+/*!
+ * Returns a new MEDCouplingFieldDouble holding a direction vector for each SEG2 in \a
+ * this 1D mesh. The computed vectors have <em> this->getSpaceDimension() </em> components
+ * and are \b not normalized.
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
+ * cells and one time. The caller is to delete this field using decrRef() as
+ * it is no more needed.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If the coordinates array is not set.
+ * \throw If \a this->getMeshDimension() != 1.
+ * \throw If \a this mesh includes cells of type other than SEG2.
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::buildDirectionVectorField() const
+{
+ if(getMeshDimension()!=1)
+ throw INTERP_KERNEL::Exception("Expected a umesh with meshDim == 1 for buildDirectionVectorField !");
+ if(_types.size()!=1 || *(_types.begin())!=INTERP_KERNEL::NORM_SEG2)
+ throw INTERP_KERNEL::Exception("Expected a umesh with only NORM_SEG2 type of elements for buildDirectionVectorField !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> array=DataArrayDouble::New();
+ int nbOfCells=getNumberOfCells();
+ int spaceDim=getSpaceDimension();
+ array->alloc(nbOfCells,spaceDim);
+ double *pt=array->getPointer();
+ const double *coo=getCoords()->getConstPointer();
+ std::vector<int> conn;
+ conn.reserve(2);
+ for(int i=0;i<nbOfCells;i++)
+ {
+ conn.resize(0);
+ getNodeIdsOfCell(i,conn);
+ pt=std::transform(coo+conn[1]*spaceDim,coo+(conn[1]+1)*spaceDim,coo+conn[0]*spaceDim,pt,std::minus<double>());
+ }
+ ret->setArray(array);
+ ret->setMesh(this);
+ ret->synchronizeTimeWithSupport();
+ return ret.retn();
+}
+
+/*!
+ * Creates a 2D mesh by cutting \a this 3D mesh with a plane. In addition to the mesh,
+ * returns a new DataArrayInt, of length equal to the number of 2D cells in the result
+ * mesh, holding, for each cell in the result mesh, an id of a 3D cell it comes
+ * from. If a result face is shared by two 3D cells, then the face in included twice in
+ * the result mesh.
+ * \param [in] origin - 3 components of a point defining location of the plane.
+ * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
+ * must be greater than 1e-6.
+ * \param [in] eps - half-thickness of the plane.
+ * \param [out] cellIds - a new instance of DataArrayInt holding ids of 3D cells
+ * producing correspondent 2D cells. The caller is to delete this array
+ * using decrRef() as it is no more needed.
+ * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This mesh does
+ * not share the node coordinates array with \a this mesh. The caller is to
+ * delete this mesh using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If \a this->getMeshDimension() != 3 or \a this->getSpaceDimension() != 3.
+ * \throw If magnitude of \a vec is less than 1e-6.
+ * \throw If the plane does not intersect any 3D cell of \a this mesh.
+ * \throw If \a this includes quadratic cells.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::buildSlice3D(const double *origin, const double *vec, double eps, DataArrayInt *&cellIds) const
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> candidates=getCellIdsCrossingPlane(origin,vec,eps);
+ if(candidates->empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D : No 3D cells in this intercepts the specified plane considering bounding boxes !");
+ std::vector<int> nodes;
+ DataArrayInt *cellIds1D=0;
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> subMesh=static_cast<MEDCouplingUMesh*>(buildPartOfMySelf(candidates->begin(),candidates->end(),false));
+ subMesh->findNodesOnPlane(origin,vec,eps,nodes);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc1=DataArrayInt::New(),desc2=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> descIndx1=DataArrayInt::New(),descIndx2=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDesc1=DataArrayInt::New(),revDesc2=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDescIndx1=DataArrayInt::New(),revDescIndx2=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mDesc2=subMesh->buildDescendingConnectivity(desc2,descIndx2,revDesc2,revDescIndx2);//meshDim==2 spaceDim==3
+ revDesc2=0; revDescIndx2=0;
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mDesc1=mDesc2->buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1);//meshDim==1 spaceDim==3
+ revDesc1=0; revDescIndx1=0;
+ mDesc1->fillCellIdsToKeepFromNodeIds(&nodes[0],&nodes[0]+nodes.size(),true,cellIds1D);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellIds1DTmp(cellIds1D);
+ //
+ std::vector<int> cut3DCurve(mDesc1->getNumberOfCells(),-2);
+ for(const int *it=cellIds1D->begin();it!=cellIds1D->end();it++)
+ cut3DCurve[*it]=-1;
+ mDesc1->split3DCurveWithPlane(origin,vec,eps,cut3DCurve);
+ std::vector< std::pair<int,int> > cut3DSurf(mDesc2->getNumberOfCells());
+ AssemblyForSplitFrom3DCurve(cut3DCurve,nodes,mDesc2->getNodalConnectivity()->getConstPointer(),mDesc2->getNodalConnectivityIndex()->getConstPointer(),
+ mDesc1->getNodalConnectivity()->getConstPointer(),mDesc1->getNodalConnectivityIndex()->getConstPointer(),
+ desc1->getConstPointer(),descIndx1->getConstPointer(),cut3DSurf);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> conn(DataArrayInt::New()),connI(DataArrayInt::New()),cellIds2(DataArrayInt::New());
+ connI->pushBackSilent(0); conn->alloc(0,1); cellIds2->alloc(0,1);
+ subMesh->assemblyForSplitFrom3DSurf(cut3DSurf,desc2->getConstPointer(),descIndx2->getConstPointer(),conn,connI,cellIds2);
+ if(cellIds2->empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D : No 3D cells in this intercepts the specified plane !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New("Slice3D",2);
+ ret->setCoords(mDesc1->getCoords());
+ ret->setConnectivity(conn,connI,true);
+ cellIds=candidates->selectByTupleId(cellIds2->begin(),cellIds2->end());
+ return ret.retn();
+}
+
+/*!
+ * Creates an 1D mesh by cutting \a this 2D mesh in 3D space with a plane. In
+addition to the mesh, returns a new DataArrayInt, of length equal to the number of 1D cells in the result mesh, holding, for each cell in the result mesh, an id of a 2D cell it comes
+from. If a result segment is shared by two 2D cells, then the segment in included twice in
+the result mesh.
+ * \param [in] origin - 3 components of a point defining location of the plane.
+ * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
+ * must be greater than 1e-6.
+ * \param [in] eps - half-thickness of the plane.
+ * \param [out] cellIds - a new instance of DataArrayInt holding ids of faces
+ * producing correspondent segments. The caller is to delete this array
+ * using decrRef() as it is no more needed.
+ * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This is an 1D
+ * mesh in 3D space. This mesh does not share the node coordinates array with
+ * \a this mesh. The caller is to delete this mesh using decrRef() as it is
+ * no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If \a this->getMeshDimension() != 2 or \a this->getSpaceDimension() != 3.
+ * \throw If magnitude of \a vec is less than 1e-6.
+ * \throw If the plane does not intersect any 2D cell of \a this mesh.
+ * \throw If \a this includes quadratic cells.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::buildSlice3DSurf(const double *origin, const double *vec, double eps, DataArrayInt *&cellIds) const
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=2 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf works on umeshes with meshdim equal to 2 and spaceDim equal to 3 !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> candidates=getCellIdsCrossingPlane(origin,vec,eps);
+ if(candidates->empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf : No 3D surf cells in this intercepts the specified plane considering bounding boxes !");
+ std::vector<int> nodes;
+ DataArrayInt *cellIds1D=0;
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> subMesh=static_cast<MEDCouplingUMesh*>(buildPartOfMySelf(candidates->begin(),candidates->end(),false));
+ subMesh->findNodesOnPlane(origin,vec,eps,nodes);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> descIndx1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDesc1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDescIndx1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mDesc1=subMesh->buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1);//meshDim==1 spaceDim==3
+ mDesc1->fillCellIdsToKeepFromNodeIds(&nodes[0],&nodes[0]+nodes.size(),true,cellIds1D);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellIds1DTmp(cellIds1D);
+ //
+ std::vector<int> cut3DCurve(mDesc1->getNumberOfCells(),-2);
+ for(const int *it=cellIds1D->begin();it!=cellIds1D->end();it++)
+ cut3DCurve[*it]=-1;
+ mDesc1->split3DCurveWithPlane(origin,vec,eps,cut3DCurve);
+ int ncellsSub=subMesh->getNumberOfCells();
+ std::vector< std::pair<int,int> > cut3DSurf(ncellsSub);
+ AssemblyForSplitFrom3DCurve(cut3DCurve,nodes,subMesh->getNodalConnectivity()->getConstPointer(),subMesh->getNodalConnectivityIndex()->getConstPointer(),
+ mDesc1->getNodalConnectivity()->getConstPointer(),mDesc1->getNodalConnectivityIndex()->getConstPointer(),
+ desc1->getConstPointer(),descIndx1->getConstPointer(),cut3DSurf);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> conn(DataArrayInt::New()),connI(DataArrayInt::New()),cellIds2(DataArrayInt::New()); connI->pushBackSilent(0);
+ conn->alloc(0,1);
+ const int *nodal=subMesh->getNodalConnectivity()->getConstPointer();
+ const int *nodalI=subMesh->getNodalConnectivityIndex()->getConstPointer();
+ for(int i=0;i<ncellsSub;i++)
+ {
+ if(cut3DSurf[i].first!=-1 && cut3DSurf[i].second!=-1)
+ {
+ if(cut3DSurf[i].first!=-2)
+ {
+ conn->pushBackSilent((int)INTERP_KERNEL::NORM_SEG2); conn->pushBackSilent(cut3DSurf[i].first); conn->pushBackSilent(cut3DSurf[i].second);
+ connI->pushBackSilent(conn->getNumberOfTuples());
+ cellIds2->pushBackSilent(i);
+ }
+ else
+ {
+ int cellId3DSurf=cut3DSurf[i].second;
+ int offset=nodalI[cellId3DSurf]+1;
+ int nbOfEdges=nodalI[cellId3DSurf+1]-offset;
+ for(int j=0;j<nbOfEdges;j++)
+ {
+ conn->pushBackSilent((int)INTERP_KERNEL::NORM_SEG2); conn->pushBackSilent(nodal[offset+j]); conn->pushBackSilent(nodal[offset+(j+1)%nbOfEdges]);
+ connI->pushBackSilent(conn->getNumberOfTuples());
+ cellIds2->pushBackSilent(cellId3DSurf);
+ }
+ }
+ }
+ }
+ if(cellIds2->empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf : No 3DSurf cells in this intercepts the specified plane !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New("Slice3DSurf",1);
+ ret->setCoords(mDesc1->getCoords());
+ ret->setConnectivity(conn,connI,true);
+ cellIds=candidates->selectByTupleId(cellIds2->begin(),cellIds2->end());
+ return ret.retn();
+}
+
+/*!
+ * Finds cells whose bounding boxes intersect a given plane.
+ * \param [in] origin - 3 components of a point defining location of the plane.
+ * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
+ * must be greater than 1e-6.
+ * \param [in] eps - half-thickness of the plane.
+ * \return DataArrayInt * - a new instance of DataArrayInt holding ids of the found
+ * cells. The caller is to delete this array using decrRef() as it is no more
+ * needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If \a this->getSpaceDimension() != 3.
+ * \throw If magnitude of \a vec is less than 1e-6.
+ * \sa buildSlice3D()
+ */
+DataArrayInt *MEDCouplingUMesh::getCellIdsCrossingPlane(const double *origin, const double *vec, double eps) const
+{
+ checkFullyDefined();
+ if(getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D works on umeshes with spaceDim equal to 3 !");
+ double normm=sqrt(vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2]);
+ if(normm<1e-6)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellIdsCrossingPlane : parameter 'vec' should have a norm2 greater than 1e-6 !");
+ double vec2[3];
+ vec2[0]=vec[1]; vec2[1]=-vec[0]; vec2[2]=0.;//vec2 is the result of cross product of vec with (0,0,1)
+ double angle=acos(vec[2]/normm);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cellIds;
+ double bbox[6];
+ if(angle>eps)
+ {
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coo=_coords->deepCpy();
+ MEDCouplingPointSet::Rotate3DAlg(origin,vec2,angle,coo->getNumberOfTuples(),coo->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mw=clone(false);//false -> shallow copy
+ mw->setCoords(coo);
+ mw->getBoundingBox(bbox);
+ bbox[4]=origin[2]-eps; bbox[5]=origin[2]+eps;
+ cellIds=mw->getCellsInBoundingBox(bbox,eps);
+ }
+ else
+ {
+ getBoundingBox(bbox);
+ bbox[4]=origin[2]-eps; bbox[5]=origin[2]+eps;
+ cellIds=getCellsInBoundingBox(bbox,eps);
+ }
+ return cellIds.retn();
+}
+
+/*!
+ * This method checks that \a this is a contiguous mesh. The user is expected to call this method on a mesh with meshdim==1.
+ * If not an exception will thrown. If this is an empty mesh with no cell an exception will be thrown too.
+ * No consideration of coordinate is done by this method.
+ * A 1D mesh is said contiguous if : a cell i with nodal connectivity (k,p) the cell i+1 the nodal connectivity should be (p,m)
+ * If not false is returned. In case that false is returned a call to ParaMEDMEM::MEDCouplingUMesh::mergeNodes could be usefull.
+ */
+bool MEDCouplingUMesh::isContiguous1D() const
+{
+ if(getMeshDimension()!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isContiguous1D : this method has a sense only for 1D mesh !");
+ int nbCells=getNumberOfCells();
+ if(nbCells<1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isContiguous1D : this method has a sense for non empty mesh !");
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const int *conn=_nodal_connec->getConstPointer();
+ int ref=conn[connI[0]+2];
+ for(int i=1;i<nbCells;i++)
+ {
+ if(conn[connI[i]+1]!=ref)
+ return false;
+ ref=conn[connI[i]+2];
+ }
+ return true;
+}
+
+/*!
+ * This method is only callable on mesh with meshdim == 1 containing only SEG2 and spaceDim==3.
+ * This method projects this on the 3D line defined by (pt,v). This methods first checks that all SEG2 are along v vector.
+ * \param pt reference point of the line
+ * \param v normalized director vector of the line
+ * \param eps max precision before throwing an exception
+ * \param res output of size this->getNumberOfCells
+ */
+void MEDCouplingUMesh::project1D(const double *pt, const double *v, double eps, double *res) const
+{
+ if(getMeshDimension()!=1)
+ throw INTERP_KERNEL::Exception("Expected a umesh with meshDim == 1 for project1D !");
+ if(_types.size()!=1 || *(_types.begin())!=INTERP_KERNEL::NORM_SEG2)
+ throw INTERP_KERNEL::Exception("Expected a umesh with only NORM_SEG2 type of elements for project1D !");
+ if(getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("Expected a umesh with spaceDim==3 for project1D !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> f=buildDirectionVectorField();
+ const double *fPtr=f->getArray()->getConstPointer();
+ double tmp[3];
+ for(int i=0;i<getNumberOfCells();i++)
+ {
+ const double *tmp1=fPtr+3*i;
+ tmp[0]=tmp1[1]*v[2]-tmp1[2]*v[1];
+ tmp[1]=tmp1[2]*v[0]-tmp1[0]*v[2];
+ tmp[2]=tmp1[0]*v[1]-tmp1[1]*v[0];
+ double n1=INTERP_KERNEL::norm<3>(tmp);
+ n1/=INTERP_KERNEL::norm<3>(tmp1);
+ if(n1>eps)
+ throw INTERP_KERNEL::Exception("UMesh::Projection 1D failed !");
+ }
+ const double *coo=getCoords()->getConstPointer();
+ for(int i=0;i<getNumberOfNodes();i++)
+ {
+ std::transform(coo+i*3,coo+i*3+3,pt,tmp,std::minus<double>());
+ std::transform(tmp,tmp+3,v,tmp,std::multiplies<double>());
+ res[i]=std::accumulate(tmp,tmp+3,0.);
+ }
+}
+
+/*!
+ * This method computes the distance from a point \a pt to \a this and the first \a cellId in \a this corresponding to the returned distance.
+ * \a this is expected to be a mesh so that its space dimension is equal to its
+ * mesh dimension + 1. Furthermore only mesh dimension 1 and 2 are supported for the moment.
+ * Distance from \a ptBg to \a ptEnd is expected to be equal to the space dimension. \a this is also expected to be fully defined (connectivity and coordinates).
+
+ * WARNING, if there is some orphan nodes in \a this (nodes not fetched by any cells in \a this ( see MEDCouplingUMesh::zipCoords ) ) these nodes will ** not ** been taken
+ * into account in this method. Only cells and nodes lying on them are considered in the algorithm (even if one of these orphan nodes is closer than returned distance).
+ * A user that needs to consider orphan nodes should invoke DataArrayDouble::minimalDistanceTo method on the coordinates array of \a this.
+ *
+ * So this method is more accurate (so, more costly) than simply searching for the closest point in \a this.
+ * If only this information is enough for you simply call \c getCoords()->distanceToTuple on \a this.
+ *
+ * \param [in] ptBg the start pointer (included) of the coordinates of the point
+ * \param [in] ptEnd the end pointer (not included) of the coordinates of the point
+ * \param [out] cellId that corresponds to minimal distance. If the closer node is not linked to any cell in \a this -1 is returned.
+ * \return the positive value of the distance.
+ * \throw if distance from \a ptBg to \a ptEnd is not equal to the space dimension. An exception is also thrown if mesh dimension of \a this is not equal to space
+ * dimension - 1.
+ * \sa DataArrayDouble::distanceToTuple, MEDCouplingUMesh::distanceToPoints
+ */
+double MEDCouplingUMesh::distanceToPoint(const double *ptBg, const double *ptEnd, int& cellId) const
+{
+ int meshDim=getMeshDimension(),spaceDim=getSpaceDimension();
+ if(meshDim!=spaceDim-1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoint works only for spaceDim=meshDim+1 !");
+ if(meshDim!=2 && meshDim!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoint : only mesh dimension 2 and 1 are implemented !");
+ checkFullyDefined();
+ if((int)std::distance(ptBg,ptEnd)!=spaceDim)
+ { std::ostringstream oss; oss << "MEDCouplingUMesh::distanceToPoint : input point has to have dimension equal to the space dimension of this (" << spaceDim << ") !"; throw INTERP_KERNEL::Exception(oss.str().c_str()); }
+ DataArrayInt *ret1=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> pts=DataArrayDouble::New(); pts->useArray(ptBg,false,C_DEALLOC,1,spaceDim);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret0=distanceToPoints(pts,ret1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret1Safe(ret1);
+ cellId=*ret1Safe->begin();
+ return *ret0->begin();
+}
+
+/*!
+ * This method computes the distance from each point of points serie \a pts (stored in a DataArrayDouble in which each tuple represents a point)
+ * to \a this and the first \a cellId in \a this corresponding to the returned distance.
+ * WARNING, if there is some orphan nodes in \a this (nodes not fetched by any cells in \a this ( see MEDCouplingUMesh::zipCoords ) ) these nodes will ** not ** been taken
+ * into account in this method. Only cells and nodes lying on them are considered in the algorithm (even if one of these orphan nodes is closer than returned distance).
+ * A user that needs to consider orphan nodes should invoke DataArrayDouble::minimalDistanceTo method on the coordinates array of \a this.
+ *
+ * \a this is expected to be a mesh so that its space dimension is equal to its
+ * mesh dimension + 1. Furthermore only mesh dimension 1 and 2 are supported for the moment.
+ * Number of components of \a pts is expected to be equal to the space dimension. \a this is also expected to be fully defined (connectivity and coordinates).
+ *
+ * So this method is more accurate (so, more costly) than simply searching for each point in \a pts the closest point in \a this.
+ * If only this information is enough for you simply call \c getCoords()->distanceToTuple on \a this.
+ *
+ * \param [in] pts the list of points in which each tuple represents a point
+ * \param [out] cellIds a newly allocated object that tells for each point in \a pts the first cell id in \a this that minimizes the distance.
+ * \return a newly allocated object to be dealed by the caller that tells for each point in \a pts the distance to \a this.
+ * \throw if number of components of \a pts is not equal to the space dimension.
+ * \throw if mesh dimension of \a this is not equal to space dimension - 1.
+ * \sa DataArrayDouble::distanceToTuple, MEDCouplingUMesh::distanceToPoint
+ */
+DataArrayDouble *MEDCouplingUMesh::distanceToPoints(const DataArrayDouble *pts, DataArrayInt *& cellIds) const
+{
+ if(!pts)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : input points pointer is NULL !");
+ pts->checkAllocated();
+ int meshDim=getMeshDimension(),spaceDim=getSpaceDimension();
+ if(meshDim!=spaceDim-1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints works only for spaceDim=meshDim+1 !");
+ if(meshDim!=2 && meshDim!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : only mesh dimension 2 and 1 are implemented !");
+ if(pts->getNumberOfComponents()!=spaceDim)
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::distanceToPoints : input pts DataArrayDouble has " << pts->getNumberOfComponents() << " components whereas it should be equal to " << spaceDim << " (mesh spaceDimension) !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ checkFullyDefined();
+ int nbCells=getNumberOfCells();
+ if(nbCells==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : no cells in this !");
+ int nbOfPts=pts->getNumberOfTuples();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret0=DataArrayDouble::New(); ret0->alloc(nbOfPts,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret1=DataArrayInt::New(); ret1->alloc(nbOfPts,1);
+ const int *nc=_nodal_connec->begin(),*ncI=_nodal_connec_index->begin(); const double *coords=_coords->begin();
+ double *ret0Ptr=ret0->getPointer(); int *ret1Ptr=ret1->getPointer(); const double *ptsPtr=pts->begin();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> bboxArr(getBoundingBoxForBBTree());
+ const double *bbox(bboxArr->begin());
+ switch(spaceDim)
+ {
+ case 3:
+ {
+ BBTreeDst<3> myTree(bbox,0,0,nbCells);
+ for(int i=0;i<nbOfPts;i++,ret0Ptr++,ret1Ptr++,ptsPtr+=3)
+ {
+ double x=std::numeric_limits<double>::max();
+ std::vector<int> elems;
+ myTree.getMinDistanceOfMax(ptsPtr,x);
+ myTree.getElemsWhoseMinDistanceToPtSmallerThan(ptsPtr,x,elems);
+ DistanceToPoint3DSurfAlg(ptsPtr,&elems[0],&elems[0]+elems.size(),coords,nc,ncI,*ret0Ptr,*ret1Ptr);
+ }
+ break;
+ }
+ case 2:
+ {
+ BBTreeDst<2> myTree(bbox,0,0,nbCells);
+ for(int i=0;i<nbOfPts;i++,ret0Ptr++,ret1Ptr++,ptsPtr+=2)
+ {
+ double x=std::numeric_limits<double>::max();
+ std::vector<int> elems;
+ myTree.getMinDistanceOfMax(ptsPtr,x);
+ myTree.getElemsWhoseMinDistanceToPtSmallerThan(ptsPtr,x,elems);
+ DistanceToPoint2DCurveAlg(ptsPtr,&elems[0],&elems[0]+elems.size(),coords,nc,ncI,*ret0Ptr,*ret1Ptr);
+ }
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : only spacedim 2 and 3 supported !");
+ }
+ cellIds=ret1.retn();
+ return ret0.retn();
+}
+
+/*!
+ * \param [in] pt the start pointer (included) of the coordinates of the point
+ * \param [in] cellIdsBg the start pointer (included) of cellIds
+ * \param [in] cellIdsEnd the end pointer (excluded) of cellIds
+ * \param [in] nc nodal connectivity
+ * \param [in] ncI nodal connectivity index
+ * \param [in,out] ret0 the min distance between \a this and the external input point
+ * \param [out] cellId that corresponds to minimal distance. If the closer node is not linked to any cell in \a this -1 is returned.
+ * \sa MEDCouplingUMesh::distanceToPoint, MEDCouplingUMesh::distanceToPoints
+ */
+void MEDCouplingUMesh::DistanceToPoint3DSurfAlg(const double *pt, const int *cellIdsBg, const int *cellIdsEnd, const double *coords, const int *nc, const int *ncI, double& ret0, int& cellId)
+{
+ cellId=-1;
+ ret0=std::numeric_limits<double>::max();
+ for(const int *zeCell=cellIdsBg;zeCell!=cellIdsEnd;zeCell++)
+ {
+ switch((INTERP_KERNEL::NormalizedCellType)nc[ncI[*zeCell]])
+ {
+ case INTERP_KERNEL::NORM_TRI3:
+ {
+ double tmp=INTERP_KERNEL::DistanceFromPtToTriInSpaceDim3(pt,coords+3*nc[ncI[*zeCell]+1],coords+3*nc[ncI[*zeCell]+2],coords+3*nc[ncI[*zeCell]+3]);
+ if(tmp<ret0)
+ { ret0=tmp; cellId=*zeCell; }
+ break;
+ }
+ case INTERP_KERNEL::NORM_QUAD4:
+ case INTERP_KERNEL::NORM_POLYGON:
+ {
+ double tmp=INTERP_KERNEL::DistanceFromPtToPolygonInSpaceDim3(pt,nc+ncI[*zeCell]+1,nc+ncI[*zeCell+1],coords);
+ if(tmp<ret0)
+ { ret0=tmp; cellId=*zeCell; }
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoint3DSurfAlg : not managed cell type ! Supporting TRI3, QUAD4 and POLYGON !");
+ }
+ }
+}
+
+/*!
+ * \param [in] pt the start pointer (included) of the coordinates of the point
+ * \param [in] cellIdsBg the start pointer (included) of cellIds
+ * \param [in] cellIdsEnd the end pointer (excluded) of cellIds
+ * \param [in] nc nodal connectivity
+ * \param [in] ncI nodal connectivity index
+ * \param [in,out] ret0 the min distance between \a this and the external input point
+ * \param [out] cellId that corresponds to minimal distance. If the closer node is not linked to any cell in \a this -1 is returned.
+ * \sa MEDCouplingUMesh::distanceToPoint, MEDCouplingUMesh::distanceToPoints
+ */
+void MEDCouplingUMesh::DistanceToPoint2DCurveAlg(const double *pt, const int *cellIdsBg, const int *cellIdsEnd, const double *coords, const int *nc, const int *ncI, double& ret0, int& cellId)
+{
+ cellId=-1;
+ ret0=std::numeric_limits<double>::max();
+ for(const int *zeCell=cellIdsBg;zeCell!=cellIdsEnd;zeCell++)
+ {
+ switch((INTERP_KERNEL::NormalizedCellType)nc[ncI[*zeCell]])
+ {
+ case INTERP_KERNEL::NORM_SEG2:
+ {
+ std::size_t uselessEntry=0;
+ double tmp=INTERP_KERNEL::SquareDistanceFromPtToSegInSpaceDim2(pt,coords+2*nc[ncI[*zeCell]+1],coords+2*nc[ncI[*zeCell]+2],uselessEntry);
+ tmp=sqrt(tmp);
+ if(tmp<ret0)
+ { ret0=tmp; cellId=*zeCell; }
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoint2DCurveAlg : not managed cell type ! Supporting SEG2 !");
+ }
+ }
+}
+
+/*!
+ * Finds cells in contact with a ball (i.e. a point with precision).
+ * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
+ * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
+ *
+ * \warning This method is suitable if the caller intends to evaluate only one
+ * point, for more points getCellsContainingPoints() is recommended as it is
+ * faster.
+ * \param [in] pos - array of coordinates of the ball central point.
+ * \param [in] eps - ball radius.
+ * \return int - a smallest id of cells being in contact with the ball, -1 in case
+ * if there are no such cells.
+ * \throw If the coordinates array is not set.
+ * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
+ */
+int MEDCouplingUMesh::getCellContainingPoint(const double *pos, double eps) const
+{
+ std::vector<int> elts;
+ getCellsContainingPoint(pos,eps,elts);
+ if(elts.empty())
+ return -1;
+ return elts.front();
+}
+
+/*!
+ * Finds cells in contact with a ball (i.e. a point with precision).
+ * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
+ * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
+ * \warning This method is suitable if the caller intends to evaluate only one
+ * point, for more points getCellsContainingPoints() is recommended as it is
+ * faster.
+ * \param [in] pos - array of coordinates of the ball central point.
+ * \param [in] eps - ball radius.
+ * \param [out] elts - vector returning ids of the found cells. It is cleared
+ * before inserting ids.
+ * \throw If the coordinates array is not set.
+ * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_getCellsContainingPoint "Here is a C++ example".<br>
+ * \ref py_mcumesh_getCellsContainingPoint "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::getCellsContainingPoint(const double *pos, double eps, std::vector<int>& elts) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> eltsUg,eltsIndexUg;
+ getCellsContainingPoints(pos,1,eps,eltsUg,eltsIndexUg);
+ elts.clear(); elts.insert(elts.end(),eltsUg->begin(),eltsUg->end());
+}
+
+/// @cond INTERNAL
+
+namespace ParaMEDMEM
+{
+ template<const int SPACEDIMM>
+ class DummyClsMCUG
+ {
+ public:
+ static const int MY_SPACEDIM=SPACEDIMM;
+ static const int MY_MESHDIM=8;
+ typedef int MyConnType;
+ static const INTERP_KERNEL::NumberingPolicy My_numPol=INTERP_KERNEL::ALL_C_MODE;
+ // begin
+ // useless, but for windows compilation ...
+ const double* getCoordinatesPtr() const { return 0; }
+ const int* getConnectivityPtr() const { return 0; }
+ const int* getConnectivityIndexPtr() const { return 0; }
+ INTERP_KERNEL::NormalizedCellType getTypeOfElement(int) const { return (INTERP_KERNEL::NormalizedCellType)0; }
+ // end
+ };
+
+ /*!
+ * Warning the nodes in \a m should be decrRefed ! To avoid that Node * pointer be replaced by another instance.
+ */
+ INTERP_KERNEL::Edge *MEDCouplingUMeshBuildQPFromEdge2(INTERP_KERNEL::NormalizedCellType typ, const int *bg, const double *coords2D, std::map<INTERP_KERNEL::Node *,int>& m)
+ {
+ INTERP_KERNEL::Edge *ret=0;
+ INTERP_KERNEL::Node *n0(new INTERP_KERNEL::Node(coords2D[2*bg[0]],coords2D[2*bg[0]+1])),*n1(new INTERP_KERNEL::Node(coords2D[2*bg[1]],coords2D[2*bg[1]+1]));
+ m[n0]=bg[0]; m[n1]=bg[1];
+ switch(typ)
+ {
+ case INTERP_KERNEL::NORM_SEG2:
+ {
+ ret=new INTERP_KERNEL::EdgeLin(n0,n1);
+ break;
+ }
+ case INTERP_KERNEL::NORM_SEG3:
+ {
+ INTERP_KERNEL::Node *n2(new INTERP_KERNEL::Node(coords2D[2*bg[2]],coords2D[2*bg[2]+1])); m[n2]=bg[2];
+ INTERP_KERNEL::EdgeLin *e1(new INTERP_KERNEL::EdgeLin(n0,n2)),*e2(new INTERP_KERNEL::EdgeLin(n2,n1));
+ INTERP_KERNEL::SegSegIntersector inters(*e1,*e2);
+ // is the SEG3 degenerated, and thus can be reduced to a SEG2?
+ bool colinearity(inters.areColinears());
+ delete e1; delete e2;
+ if(colinearity)
+ { ret=new INTERP_KERNEL::EdgeLin(n0,n1); }
+ else
+ { ret=new INTERP_KERNEL::EdgeArcCircle(n0,n2,n1); }
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMeshBuildQPFromEdge2 : Expecting a mesh with spaceDim==2 and meshDim==1 !");
+ }
+ return ret;
+ }
+
+ INTERP_KERNEL::Edge *MEDCouplingUMeshBuildQPFromEdge(INTERP_KERNEL::NormalizedCellType typ, std::map<int, std::pair<INTERP_KERNEL::Node *,bool> >& mapp2, const int *bg)
+ {
+ INTERP_KERNEL::Edge *ret=0;
+ switch(typ)
+ {
+ case INTERP_KERNEL::NORM_SEG2:
+ {
+ ret=new INTERP_KERNEL::EdgeLin(mapp2[bg[0]].first,mapp2[bg[1]].first);
+ break;
+ }
+ case INTERP_KERNEL::NORM_SEG3:
+ {
+ INTERP_KERNEL::EdgeLin *e1=new INTERP_KERNEL::EdgeLin(mapp2[bg[0]].first,mapp2[bg[2]].first);
+ INTERP_KERNEL::EdgeLin *e2=new INTERP_KERNEL::EdgeLin(mapp2[bg[2]].first,mapp2[bg[1]].first);
+ INTERP_KERNEL::SegSegIntersector inters(*e1,*e2);
+ // is the SEG3 degenerated, and thus can be reduced to a SEG2?
+ bool colinearity=inters.areColinears();
+ delete e1; delete e2;
+ if(colinearity)
+ ret=new INTERP_KERNEL::EdgeLin(mapp2[bg[0]].first,mapp2[bg[1]].first);
+ else
+ ret=new INTERP_KERNEL::EdgeArcCircle(mapp2[bg[0]].first,mapp2[bg[2]].first,mapp2[bg[1]].first);
+ mapp2[bg[2]].second=false;
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMeshBuildQPFromEdge : Expecting a mesh with spaceDim==2 and meshDim==1 !");
+ }
+ return ret;
+ }
+
+ /*!
+ * This method creates a sub mesh in Geometric2D DS. The sub mesh is composed by the sub set of cells in 'candidates' taken from
+ * the global mesh 'mDesc'.
+ * The input mesh 'mDesc' must be so that mDim==1 and spaceDim==2.
+ * 'mapp' returns a mapping between local numbering in submesh (represented by a Node*) and the global node numbering in 'mDesc'.
+ */
+ INTERP_KERNEL::QuadraticPolygon *MEDCouplingUMeshBuildQPFromMesh(const MEDCouplingUMesh *mDesc, const std::vector<int>& candidates,
+ std::map<INTERP_KERNEL::Node *,int>& mapp)
+ throw(INTERP_KERNEL::Exception)
+ {
+ mapp.clear();
+ std::map<int, std::pair<INTERP_KERNEL::Node *,bool> > mapp2;//bool is for a flag specifying if node is boundary (true) or only a middle for SEG3.
+ const double *coo=mDesc->getCoords()->getConstPointer();
+ const int *c=mDesc->getNodalConnectivity()->getConstPointer();
+ const int *cI=mDesc->getNodalConnectivityIndex()->getConstPointer();
+ std::set<int> s;
+ for(std::vector<int>::const_iterator it=candidates.begin();it!=candidates.end();it++)
+ s.insert(c+cI[*it]+1,c+cI[(*it)+1]);
+ for(std::set<int>::const_iterator it2=s.begin();it2!=s.end();it2++)
+ {
+ INTERP_KERNEL::Node *n=new INTERP_KERNEL::Node(coo[2*(*it2)],coo[2*(*it2)+1]);
+ mapp2[*it2]=std::pair<INTERP_KERNEL::Node *,bool>(n,true);
+ }
+ INTERP_KERNEL::QuadraticPolygon *ret=new INTERP_KERNEL::QuadraticPolygon;
+ for(std::vector<int>::const_iterator it=candidates.begin();it!=candidates.end();it++)
+ {
+ INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)c[cI[*it]];
+ ret->pushBack(MEDCouplingUMeshBuildQPFromEdge(typ,mapp2,c+cI[*it]+1));
+ }
+ for(std::map<int, std::pair<INTERP_KERNEL::Node *,bool> >::const_iterator it2=mapp2.begin();it2!=mapp2.end();it2++)
+ {
+ if((*it2).second.second)
+ mapp[(*it2).second.first]=(*it2).first;
+ ((*it2).second.first)->decrRef();
+ }
+ return ret;
+ }
+
+ INTERP_KERNEL::Node *MEDCouplingUMeshBuildQPNode(int nodeId, const double *coo1, int offset1, const double *coo2, int offset2, const std::vector<double>& addCoo)
+ {
+ if(nodeId>=offset2)
+ {
+ int locId=nodeId-offset2;
+ return new INTERP_KERNEL::Node(addCoo[2*locId],addCoo[2*locId+1]);
+ }
+ if(nodeId>=offset1)
+ {
+ int locId=nodeId-offset1;
+ return new INTERP_KERNEL::Node(coo2[2*locId],coo2[2*locId+1]);
+ }
+ return new INTERP_KERNEL::Node(coo1[2*nodeId],coo1[2*nodeId+1]);
+ }
+
+ /**
+ * Construct a mapping between set of Nodes and the standart MEDCoupling connectivity format (c, cI).
+ */
+ void MEDCouplingUMeshBuildQPFromMesh3(const double *coo1, int offset1, const double *coo2, int offset2, const std::vector<double>& addCoo,
+ const int *desc1Bg, const int *desc1End, const std::vector<std::vector<int> >& intesctEdges1,
+ /*output*/std::map<INTERP_KERNEL::Node *,int>& mapp, std::map<int,INTERP_KERNEL::Node *>& mappRev)
+ {
+ for(const int *desc1=desc1Bg;desc1!=desc1End;desc1++)
+ {
+ int eltId1=abs(*desc1)-1;
+ for(std::vector<int>::const_iterator it1=intesctEdges1[eltId1].begin();it1!=intesctEdges1[eltId1].end();it1++)
+ {
+ std::map<int,INTERP_KERNEL::Node *>::const_iterator it=mappRev.find(*it1);
+ if(it==mappRev.end())
+ {
+ INTERP_KERNEL::Node *node=MEDCouplingUMeshBuildQPNode(*it1,coo1,offset1,coo2,offset2,addCoo);
+ mapp[node]=*it1;
+ mappRev[*it1]=node;
+ }
+ }
+ }
+ }
+}
+
+/// @endcond
+
+template<int SPACEDIM>
+void MEDCouplingUMesh::getCellsContainingPointsAlg(const double *coords, const double *pos, int nbOfPoints,
+ double eps, MEDCouplingAutoRefCountObjectPtr<DataArrayInt>& elts, MEDCouplingAutoRefCountObjectPtr<DataArrayInt>& eltsIndex) const
+{
+ elts=DataArrayInt::New(); eltsIndex=DataArrayInt::New(); eltsIndex->alloc(nbOfPoints+1,1); eltsIndex->setIJ(0,0,0); elts->alloc(0,1);
+ int *eltsIndexPtr(eltsIndex->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> bboxArr(getBoundingBoxForBBTree(eps));
+ const double *bbox(bboxArr->begin());
+ int nbOfCells=getNumberOfCells();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ double bb[2*SPACEDIM];
+ BBTree<SPACEDIM,int> myTree(&bbox[0],0,0,nbOfCells,-eps);
+ for(int i=0;i<nbOfPoints;i++)
+ {
+ eltsIndexPtr[i+1]=eltsIndexPtr[i];
+ for(int j=0;j<SPACEDIM;j++)
+ {
+ bb[2*j]=pos[SPACEDIM*i+j];
+ bb[2*j+1]=pos[SPACEDIM*i+j];
+ }
+ std::vector<int> candidates;
+ myTree.getIntersectingElems(bb,candidates);
+ for(std::vector<int>::const_iterator iter=candidates.begin();iter!=candidates.end();iter++)
+ {
+ int sz(connI[(*iter)+1]-connI[*iter]-1);
+ INTERP_KERNEL::NormalizedCellType ct((INTERP_KERNEL::NormalizedCellType)conn[connI[*iter]]);
+ bool status(false);
+ if(ct!=INTERP_KERNEL::NORM_POLYGON && ct!=INTERP_KERNEL::NORM_QPOLYG)
+ status=INTERP_KERNEL::PointLocatorAlgos<DummyClsMCUG<SPACEDIM> >::isElementContainsPoint(pos+i*SPACEDIM,ct,coords,conn+connI[*iter]+1,sz,eps);
+ else
+ {
+ if(SPACEDIM!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellsContainingPointsAlg : not implemented yet for POLYGON and QPOLYGON in spaceDim 3 !");
+ INTERP_KERNEL::QUADRATIC_PLANAR::_precision=eps;
+ INTERP_KERNEL::QUADRATIC_PLANAR::_arc_detection_precision=eps;
+ std::vector<INTERP_KERNEL::Node *> nodes(sz);
+ INTERP_KERNEL::QuadraticPolygon *pol(0);
+ for(int j=0;j<sz;j++)
+ {
+ int nodeId(conn[connI[*iter]+1+j]);
+ nodes[j]=new INTERP_KERNEL::Node(coords[nodeId*SPACEDIM],coords[nodeId*SPACEDIM+1]);
+ }
+ if(!INTERP_KERNEL::CellModel::GetCellModel(ct).isQuadratic())
+ pol=INTERP_KERNEL::QuadraticPolygon::BuildLinearPolygon(nodes);
+ else
+ pol=INTERP_KERNEL::QuadraticPolygon::BuildArcCirclePolygon(nodes);
+ INTERP_KERNEL::Node *n(new INTERP_KERNEL::Node(pos[i*SPACEDIM],pos[i*SPACEDIM+1]));
+ double a(0.),b(0.),c(0.);
+ a=pol->normalizeMe(b,c); n->applySimilarity(b,c,a);
+ status=pol->isInOrOut2(n);
+ delete pol; n->decrRef();
+ }
+ if(status)
+ {
+ eltsIndexPtr[i+1]++;
+ elts->pushBackSilent(*iter);
+ }
+ }
+ }
+}
+/*!
+ * Finds cells in contact with several balls (i.e. points with precision).
+ * This method is an extension of getCellContainingPoint() and
+ * getCellsContainingPoint() for the case of multiple points.
+ * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
+ * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
+ * \param [in] pos - an array of coordinates of points in full interlace mode :
+ * X0,Y0,Z0,X1,Y1,Z1,... Size of the array must be \a
+ * this->getSpaceDimension() * \a nbOfPoints
+ * \param [in] nbOfPoints - number of points to locate within \a this mesh.
+ * \param [in] eps - radius of balls (i.e. the precision).
+ * \param [out] elts - vector returning ids of found cells.
+ * \param [out] eltsIndex - an array, of length \a nbOfPoints + 1,
+ * dividing cell ids in \a elts into groups each referring to one
+ * point. Its every element (except the last one) is an index pointing to the
+ * first id of a group of cells. For example cells in contact with the *i*-th
+ * point are described by following range of indices:
+ * [ \a eltsIndex[ *i* ], \a eltsIndex[ *i*+1 ] ) and the cell ids are
+ * \a elts[ \a eltsIndex[ *i* ]], \a elts[ \a eltsIndex[ *i* ] + 1 ], ...
+ * Number of cells in contact with the *i*-th point is
+ * \a eltsIndex[ *i*+1 ] - \a eltsIndex[ *i* ].
+ * \throw If the coordinates array is not set.
+ * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_getCellsContainingPoints "Here is a C++ example".<br>
+ * \ref py_mcumesh_getCellsContainingPoints "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::getCellsContainingPoints(const double *pos, int nbOfPoints, double eps,
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt>& elts, MEDCouplingAutoRefCountObjectPtr<DataArrayInt>& eltsIndex) const
+{
+ int spaceDim=getSpaceDimension();
+ int mDim=getMeshDimension();
+ if(spaceDim==3)
+ {
+ if(mDim==3)
+ {
+ const double *coords=_coords->getConstPointer();
+ getCellsContainingPointsAlg<3>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
+ }
+ /*else if(mDim==2)
+ {
+
+ }*/
+ else
+ throw INTERP_KERNEL::Exception("For spaceDim==3 only meshDim==3 implemented for getelementscontainingpoints !");
+ }
+ else if(spaceDim==2)
+ {
+ if(mDim==2)
+ {
+ const double *coords=_coords->getConstPointer();
+ getCellsContainingPointsAlg<2>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
+ }
+ else
+ throw INTERP_KERNEL::Exception("For spaceDim==2 only meshDim==2 implemented for getelementscontainingpoints !");
+ }
+ else if(spaceDim==1)
+ {
+ if(mDim==1)
+ {
+ const double *coords=_coords->getConstPointer();
+ getCellsContainingPointsAlg<1>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
+ }
+ else
+ throw INTERP_KERNEL::Exception("For spaceDim==1 only meshDim==1 implemented for getelementscontainingpoints !");
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellsContainingPoints : not managed for mdim not in [1,2,3] !");
+}
+
+/*!
+ * Finds butterfly cells in \a this mesh. A 2D cell is considered to be butterfly if at
+ * least two its edges intersect each other anywhere except their extremities. An
+ * INTERP_KERNEL::NORM_NORI3 cell can \b not be butterfly.
+ * \param [in,out] cells - a vector returning ids of the found cells. It is not
+ * cleared before filling in.
+ * \param [in] eps - precision.
+ * \throw If \a this->getMeshDimension() != 2.
+ * \throw If \a this->getSpaceDimension() != 2 && \a this->getSpaceDimension() != 3.
+ */
+void MEDCouplingUMesh::checkButterflyCells(std::vector<int>& cells, double eps) const
+{
+ const char msg[]="Butterfly detection work only for 2D cells with spaceDim==2 or 3!";
+ if(getMeshDimension()!=2)
+ throw INTERP_KERNEL::Exception(msg);
+ int spaceDim=getSpaceDimension();
+ if(spaceDim!=2 && spaceDim!=3)
+ throw INTERP_KERNEL::Exception(msg);
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ std::vector<double> cell2DinS2;
+ for(int i=0;i<nbOfCells;i++)
+ {
+ int offset=connI[i];
+ int nbOfNodesForCell=connI[i+1]-offset-1;
+ if(nbOfNodesForCell<=3)
+ continue;
+ bool isQuad=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[offset]).isQuadratic();
+ project2DCellOnXY(conn+offset+1,conn+connI[i+1],cell2DinS2);
+ if(isButterfly2DCell(cell2DinS2,isQuad,eps))
+ cells.push_back(i);
+ cell2DinS2.clear();
+ }
+}
+
+/*!
+ * This method is typically requested to unbutterfly 2D linear cells in \b this.
+ *
+ * This method expects that space dimension is equal to 2 and mesh dimension is equal to 2 too. If it is not the case an INTERP_KERNEL::Exception will be thrown.
+ * This method works only for linear 2D cells. If there is any of non linear cells (INTERP_KERNEL::NORM_QUAD8 for example) an INTERP_KERNEL::Exception will be thrown too.
+ *
+ * For each 2D linear cell in \b this, this method builds the convex envelop (or the convex hull) of the current cell.
+ * This convex envelop is computed using Jarvis march algorithm.
+ * The coordinates and the number of cells of \b this remain unchanged on invocation of this method.
+ * Only connectivity of some cells could be modified if those cells were not representing a convex envelop. If a cell already equals its convex envelop (regardless orientation)
+ * its connectivity will remain unchanged. If the computation leads to a modification of nodal connectivity of a cell its geometric type will be modified to INTERP_KERNEL::NORM_POLYGON.
+ *
+ * \return a newly allocated array containing cellIds that have been modified if any. If no cells have been impacted by this method NULL is returned.
+ */
+DataArrayInt *MEDCouplingUMesh::convexEnvelop2D()
+{
+ if(getMeshDimension()!=2 || getSpaceDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convexEnvelop2D works only for meshDim=2 and spaceDim=2 !");
+ checkFullyDefined();
+ const double *coords=getCoords()->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> nodalConnecIndexOut=DataArrayInt::New();
+ nodalConnecIndexOut->alloc(nbOfCells+1,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> nodalConnecOut(DataArrayInt::New());
+ int *workIndexOut=nodalConnecIndexOut->getPointer();
+ *workIndexOut=0;
+ const int *nodalConnecIn=_nodal_connec->getConstPointer();
+ const int *nodalConnecIndexIn=_nodal_connec_index->getConstPointer();
+ std::set<INTERP_KERNEL::NormalizedCellType> types;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> isChanged(DataArrayInt::New());
+ isChanged->alloc(0,1);
+ for(int i=0;i<nbOfCells;i++,workIndexOut++)
+ {
+ int pos=nodalConnecOut->getNumberOfTuples();
+ if(BuildConvexEnvelopOf2DCellJarvis(coords,nodalConnecIn+nodalConnecIndexIn[i],nodalConnecIn+nodalConnecIndexIn[i+1],nodalConnecOut))
+ isChanged->pushBackSilent(i);
+ types.insert((INTERP_KERNEL::NormalizedCellType)nodalConnecOut->getIJ(pos,0));
+ workIndexOut[1]=nodalConnecOut->getNumberOfTuples();
+ }
+ if(isChanged->empty())
+ return 0;
+ setConnectivity(nodalConnecOut,nodalConnecIndexOut,false);
+ _types=types;
+ return isChanged.retn();
+}
+
+/*!
+ * This method is \b NOT const because it can modify \a this.
+ * \a this is expected to be an unstructured mesh with meshDim==2 and spaceDim==3. If not an exception will be thrown.
+ * \param mesh1D is an unstructured mesh with MeshDim==1 and spaceDim==3. If not an exception will be thrown.
+ * \param policy specifies the type of extrusion chosen. \b 0 for translation (most simple),
+ * \b 1 for translation and rotation around point of 'mesh1D'.
+ * \return an unstructured mesh with meshDim==3 and spaceDim==3. The returned mesh has the same coords than \a this.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::buildExtrudedMesh(const MEDCouplingUMesh *mesh1D, int policy)
+{
+ checkFullyDefined();
+ mesh1D->checkFullyDefined();
+ if(!mesh1D->isContiguous1D())
+ throw INTERP_KERNEL::Exception("buildExtrudedMesh : 1D mesh passed in parameter is not contiguous !");
+ if(getSpaceDimension()!=mesh1D->getSpaceDimension())
+ throw INTERP_KERNEL::Exception("Invalid call to buildExtrudedMesh this and mesh1D must have same space dimension !");
+ if((getMeshDimension()!=2 || getSpaceDimension()!=3) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
+ throw INTERP_KERNEL::Exception("Invalid 'this' for buildExtrudedMesh method : must be (meshDim==2 and spaceDim==3) or (meshDim==1 and spaceDim==2) !");
+ if(mesh1D->getMeshDimension()!=1)
+ throw INTERP_KERNEL::Exception("Invalid 'mesh1D' for buildExtrudedMesh method : must be meshDim==1 !");
+ bool isQuad=false;
+ if(isPresenceOfQuadratic())
+ {
+ if(mesh1D->isFullyQuadratic())
+ isQuad=true;
+ else
+ throw INTERP_KERNEL::Exception("Invalid 2D mesh and 1D mesh because 2D mesh has quadratic cells and 1D is not fully quadratic !");
+ }
+ zipCoords();
+ int oldNbOfNodes=getNumberOfNodes();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> newCoords;
+ switch(policy)
+ {
+ case 0:
+ {
+ newCoords=fillExtCoordsUsingTranslation(mesh1D,isQuad);
+ break;
+ }
+ case 1:
+ {
+ newCoords=fillExtCoordsUsingTranslAndAutoRotation(mesh1D,isQuad);
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("Not implemented extrusion policy : must be in (0) !");
+ }
+ setCoords(newCoords);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=buildExtrudedMeshFromThisLowLev(oldNbOfNodes,isQuad);
+ updateTime();
+ return ret.retn();
+}
+
+/*!
+ * This method works on a 3D curve linear mesh that is to say (meshDim==1 and spaceDim==3).
+ * If it is not the case an exception will be thrown.
+ * This method is non const because the coordinate of \a this can be appended with some new points issued from
+ * intersection of plane defined by ('origin','vec').
+ * This method has one in/out parameter : 'cut3DCurve'.
+ * Param 'cut3DCurve' is expected to be of size 'this->getNumberOfCells()'. For each i in [0,'this->getNumberOfCells()')
+ * if cut3DCurve[i]==-2, it means that for cell #i in \a this nothing has been detected previously.
+ * if cut3DCurve[i]==-1, it means that cell#i has been already detected to be fully part of plane defined by ('origin','vec').
+ * This method will throw an exception if \a this contains a non linear segment.
+ */
+void MEDCouplingUMesh::split3DCurveWithPlane(const double *origin, const double *vec, double eps, std::vector<int>& cut3DCurve)
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=1 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split3DCurveWithPlane works on umeshes with meshdim equal to 1 and spaceDim equal to 3 !");
+ int ncells=getNumberOfCells();
+ int nnodes=getNumberOfNodes();
+ double vec2[3],vec3[3],vec4[3];
+ double normm=sqrt(vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2]);
+ if(normm<1e-6)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split3DCurveWithPlane : parameter 'vec' should have a norm2 greater than 1e-6 !");
+ vec2[0]=vec[0]/normm; vec2[1]=vec[1]/normm; vec2[2]=vec[2]/normm;
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coo=_coords->getConstPointer();
+ std::vector<double> addCoo;
+ for(int i=0;i<ncells;i++)
+ {
+ if(conn[connI[i]]==(int)INTERP_KERNEL::NORM_SEG2)
+ {
+ if(cut3DCurve[i]==-2)
+ {
+ int st=conn[connI[i]+1],endd=conn[connI[i]+2];
+ vec3[0]=coo[3*endd]-coo[3*st]; vec3[1]=coo[3*endd+1]-coo[3*st+1]; vec3[2]=coo[3*endd+2]-coo[3*st+2];
+ double normm2=sqrt(vec3[0]*vec3[0]+vec3[1]*vec3[1]+vec3[2]*vec3[2]);
+ double colin=std::abs((vec3[0]*vec2[0]+vec3[1]*vec2[1]+vec3[2]*vec2[2])/normm2);
+ if(colin>eps)//if colin<=eps -> current SEG2 is colinear to the input plane
+ {
+ const double *st2=coo+3*st;
+ vec4[0]=st2[0]-origin[0]; vec4[1]=st2[1]-origin[1]; vec4[2]=st2[2]-origin[2];
+ double pos=-(vec4[0]*vec2[0]+vec4[1]*vec2[1]+vec4[2]*vec2[2])/((vec3[0]*vec2[0]+vec3[1]*vec2[1]+vec3[2]*vec2[2]));
+ if(pos>eps && pos<1-eps)
+ {
+ int nNode=((int)addCoo.size())/3;
+ vec4[0]=st2[0]+pos*vec3[0]; vec4[1]=st2[1]+pos*vec3[1]; vec4[2]=st2[2]+pos*vec3[2];
+ addCoo.insert(addCoo.end(),vec4,vec4+3);
+ cut3DCurve[i]=nnodes+nNode;
+ }
+ }
+ }
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split3DCurveWithPlane : this method is only available for linear cell (NORM_SEG2) !");
+ }
+ if(!addCoo.empty())
+ {
+ int newNbOfNodes=nnodes+((int)addCoo.size())/3;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coo2=DataArrayDouble::New();
+ coo2->alloc(newNbOfNodes,3);
+ double *tmp=coo2->getPointer();
+ tmp=std::copy(_coords->begin(),_coords->end(),tmp);
+ std::copy(addCoo.begin(),addCoo.end(),tmp);
+ DataArrayDouble::SetArrayIn(coo2,_coords);
+ }
+}
+
+/*!
+ * This method incarnates the policy 0 for MEDCouplingUMesh::buildExtrudedMesh method.
+ * \param mesh1D is the input 1D mesh used for translation computation.
+ * \return newCoords new coords filled by this method.
+ */
+DataArrayDouble *MEDCouplingUMesh::fillExtCoordsUsingTranslation(const MEDCouplingUMesh *mesh1D, bool isQuad) const
+{
+ int oldNbOfNodes=getNumberOfNodes();
+ int nbOf1DCells=mesh1D->getNumberOfCells();
+ int spaceDim=getSpaceDimension();
+ DataArrayDouble *ret=DataArrayDouble::New();
+ std::vector<bool> isQuads;
+ int nbOfLevsInVec=isQuad?2*nbOf1DCells+1:nbOf1DCells+1;
+ ret->alloc(oldNbOfNodes*nbOfLevsInVec,spaceDim);
+ double *retPtr=ret->getPointer();
+ const double *coords=getCoords()->getConstPointer();
+ double *work=std::copy(coords,coords+spaceDim*oldNbOfNodes,retPtr);
+ std::vector<int> v;
+ std::vector<double> c;
+ double vec[3];
+ v.reserve(3);
+ c.reserve(6);
+ for(int i=0;i<nbOf1DCells;i++)
+ {
+ v.resize(0);
+ mesh1D->getNodeIdsOfCell(i,v);
+ c.resize(0);
+ mesh1D->getCoordinatesOfNode(v[isQuad?2:1],c);
+ mesh1D->getCoordinatesOfNode(v[0],c);
+ std::transform(c.begin(),c.begin()+spaceDim,c.begin()+spaceDim,vec,std::minus<double>());
+ for(int j=0;j<oldNbOfNodes;j++)
+ work=std::transform(vec,vec+spaceDim,retPtr+spaceDim*(i*oldNbOfNodes+j),work,std::plus<double>());
+ if(isQuad)
+ {
+ c.resize(0);
+ mesh1D->getCoordinatesOfNode(v[1],c);
+ mesh1D->getCoordinatesOfNode(v[0],c);
+ std::transform(c.begin(),c.begin()+spaceDim,c.begin()+spaceDim,vec,std::minus<double>());
+ for(int j=0;j<oldNbOfNodes;j++)
+ work=std::transform(vec,vec+spaceDim,retPtr+spaceDim*(i*oldNbOfNodes+j),work,std::plus<double>());
+ }
+ }
+ ret->copyStringInfoFrom(*getCoords());
+ return ret;
+}
+
+/*!
+ * This method incarnates the policy 1 for MEDCouplingUMesh::buildExtrudedMesh method.
+ * \param mesh1D is the input 1D mesh used for translation and automatic rotation computation.
+ * \return newCoords new coords filled by this method.
+ */
+DataArrayDouble *MEDCouplingUMesh::fillExtCoordsUsingTranslAndAutoRotation(const MEDCouplingUMesh *mesh1D, bool isQuad) const
+{
+ if(mesh1D->getSpaceDimension()==2)
+ return fillExtCoordsUsingTranslAndAutoRotation2D(mesh1D,isQuad);
+ if(mesh1D->getSpaceDimension()==3)
+ return fillExtCoordsUsingTranslAndAutoRotation3D(mesh1D,isQuad);
+ throw INTERP_KERNEL::Exception("Not implemented rotation and translation alg. for spacedim other than 2 and 3 !");
+}
+
+/*!
+ * This method incarnates the policy 1 for MEDCouplingUMesh::buildExtrudedMesh method.
+ * \param mesh1D is the input 1D mesh used for translation and automatic rotation computation.
+ * \return newCoords new coords filled by this method.
+ */
+DataArrayDouble *MEDCouplingUMesh::fillExtCoordsUsingTranslAndAutoRotation2D(const MEDCouplingUMesh *mesh1D, bool isQuad) const
+{
+ if(isQuad)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::fillExtCoordsUsingTranslAndAutoRotation2D : not implemented for quadratic cells !");
+ int oldNbOfNodes=getNumberOfNodes();
+ int nbOf1DCells=mesh1D->getNumberOfCells();
+ if(nbOf1DCells<2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::fillExtCoordsUsingTranslAndAutoRotation2D : impossible to detect any angle of rotation ! Change extrusion policy 1->0 !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret=DataArrayDouble::New();
+ int nbOfLevsInVec=nbOf1DCells+1;
+ ret->alloc(oldNbOfNodes*nbOfLevsInVec,2);
+ double *retPtr=ret->getPointer();
+ retPtr=std::copy(getCoords()->getConstPointer(),getCoords()->getConstPointer()+getCoords()->getNbOfElems(),retPtr);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp=MEDCouplingUMesh::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=getCoords()->deepCpy();
+ tmp->setCoords(tmp2);
+ const double *coo1D=mesh1D->getCoords()->getConstPointer();
+ const int *conn1D=mesh1D->getNodalConnectivity()->getConstPointer();
+ const int *connI1D=mesh1D->getNodalConnectivityIndex()->getConstPointer();
+ for(int i=1;i<nbOfLevsInVec;i++)
+ {
+ const double *begin=coo1D+2*conn1D[connI1D[i-1]+1];
+ const double *end=coo1D+2*conn1D[connI1D[i-1]+2];
+ const double *third=i+1<nbOfLevsInVec?coo1D+2*conn1D[connI1D[i]+2]:coo1D+2*conn1D[connI1D[i-2]+1];
+ const double vec[2]={end[0]-begin[0],end[1]-begin[1]};
+ tmp->translate(vec);
+ double tmp3[2],radius,alpha,alpha0;
+ const double *p0=i+1<nbOfLevsInVec?begin:third;
+ const double *p1=i+1<nbOfLevsInVec?end:begin;
+ const double *p2=i+1<nbOfLevsInVec?third:end;
+ INTERP_KERNEL::EdgeArcCircle::GetArcOfCirclePassingThru(p0,p1,p2,tmp3,radius,alpha,alpha0);
+ double cosangle=i+1<nbOfLevsInVec?(p0[0]-tmp3[0])*(p1[0]-tmp3[0])+(p0[1]-tmp3[1])*(p1[1]-tmp3[1]):(p2[0]-tmp3[0])*(p1[0]-tmp3[0])+(p2[1]-tmp3[1])*(p1[1]-tmp3[1]);
+ double angle=acos(cosangle/(radius*radius));
+ tmp->rotate(end,0,angle);
+ retPtr=std::copy(tmp2->getConstPointer(),tmp2->getConstPointer()+tmp2->getNbOfElems(),retPtr);
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method incarnates the policy 1 for MEDCouplingUMesh::buildExtrudedMesh method.
+ * \param mesh1D is the input 1D mesh used for translation and automatic rotation computation.
+ * \return newCoords new coords filled by this method.
+ */
+DataArrayDouble *MEDCouplingUMesh::fillExtCoordsUsingTranslAndAutoRotation3D(const MEDCouplingUMesh *mesh1D, bool isQuad) const
+{
+ if(isQuad)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::fillExtCoordsUsingTranslAndAutoRotation3D : not implemented for quadratic cells !");
+ int oldNbOfNodes=getNumberOfNodes();
+ int nbOf1DCells=mesh1D->getNumberOfCells();
+ if(nbOf1DCells<2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::fillExtCoordsUsingTranslAndAutoRotation3D : impossible to detect any angle of rotation ! Change extrusion policy 1->0 !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret=DataArrayDouble::New();
+ int nbOfLevsInVec=nbOf1DCells+1;
+ ret->alloc(oldNbOfNodes*nbOfLevsInVec,3);
+ double *retPtr=ret->getPointer();
+ retPtr=std::copy(getCoords()->getConstPointer(),getCoords()->getConstPointer()+getCoords()->getNbOfElems(),retPtr);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp=MEDCouplingUMesh::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=getCoords()->deepCpy();
+ tmp->setCoords(tmp2);
+ const double *coo1D=mesh1D->getCoords()->getConstPointer();
+ const int *conn1D=mesh1D->getNodalConnectivity()->getConstPointer();
+ const int *connI1D=mesh1D->getNodalConnectivityIndex()->getConstPointer();
+ for(int i=1;i<nbOfLevsInVec;i++)
+ {
+ const double *begin=coo1D+3*conn1D[connI1D[i-1]+1];
+ const double *end=coo1D+3*conn1D[connI1D[i-1]+2];
+ const double *third=i+1<nbOfLevsInVec?coo1D+3*conn1D[connI1D[i]+2]:coo1D+3*conn1D[connI1D[i-2]+1];
+ const double vec[3]={end[0]-begin[0],end[1]-begin[1],end[2]-begin[2]};
+ tmp->translate(vec);
+ double tmp3[2],radius,alpha,alpha0;
+ const double *p0=i+1<nbOfLevsInVec?begin:third;
+ const double *p1=i+1<nbOfLevsInVec?end:begin;
+ const double *p2=i+1<nbOfLevsInVec?third:end;
+ double vecPlane[3]={
+ (p1[1]-p0[1])*(p2[2]-p1[2])-(p1[2]-p0[2])*(p2[1]-p1[1]),
+ (p1[2]-p0[2])*(p2[0]-p1[0])-(p1[0]-p0[0])*(p2[2]-p1[2]),
+ (p1[0]-p0[0])*(p2[1]-p1[1])-(p1[1]-p0[1])*(p2[0]-p1[0]),
+ };
+ double norm=sqrt(vecPlane[0]*vecPlane[0]+vecPlane[1]*vecPlane[1]+vecPlane[2]*vecPlane[2]);
+ if(norm>1.e-7)
+ {
+ vecPlane[0]/=norm; vecPlane[1]/=norm; vecPlane[2]/=norm;
+ double norm2=sqrt(vecPlane[0]*vecPlane[0]+vecPlane[1]*vecPlane[1]);
+ double vec2[2]={vecPlane[1]/norm2,-vecPlane[0]/norm2};
+ double s2=norm2;
+ double c2=cos(asin(s2));
+ double m[3][3]={
+ {vec2[0]*vec2[0]*(1-c2)+c2, vec2[0]*vec2[1]*(1-c2), vec2[1]*s2},
+ {vec2[0]*vec2[1]*(1-c2), vec2[1]*vec2[1]*(1-c2)+c2, -vec2[0]*s2},
+ {-vec2[1]*s2, vec2[0]*s2, c2}
+ };
+ double p0r[3]={m[0][0]*p0[0]+m[0][1]*p0[1]+m[0][2]*p0[2], m[1][0]*p0[0]+m[1][1]*p0[1]+m[1][2]*p0[2], m[2][0]*p0[0]+m[2][1]*p0[1]+m[2][2]*p0[2]};
+ double p1r[3]={m[0][0]*p1[0]+m[0][1]*p1[1]+m[0][2]*p1[2], m[1][0]*p1[0]+m[1][1]*p1[1]+m[1][2]*p1[2], m[2][0]*p1[0]+m[2][1]*p1[1]+m[2][2]*p1[2]};
+ double p2r[3]={m[0][0]*p2[0]+m[0][1]*p2[1]+m[0][2]*p2[2], m[1][0]*p2[0]+m[1][1]*p2[1]+m[1][2]*p2[2], m[2][0]*p2[0]+m[2][1]*p2[1]+m[2][2]*p2[2]};
+ INTERP_KERNEL::EdgeArcCircle::GetArcOfCirclePassingThru(p0r,p1r,p2r,tmp3,radius,alpha,alpha0);
+ double cosangle=i+1<nbOfLevsInVec?(p0r[0]-tmp3[0])*(p1r[0]-tmp3[0])+(p0r[1]-tmp3[1])*(p1r[1]-tmp3[1]):(p2r[0]-tmp3[0])*(p1r[0]-tmp3[0])+(p2r[1]-tmp3[1])*(p1r[1]-tmp3[1]);
+ double angle=acos(cosangle/(radius*radius));
+ tmp->rotate(end,vecPlane,angle);
+
+ }
+ retPtr=std::copy(tmp2->getConstPointer(),tmp2->getConstPointer()+tmp2->getNbOfElems(),retPtr);
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method is private because not easy to use for end user. This method is const contrary to
+ * MEDCouplingUMesh::buildExtrudedMesh method because this->_coords are expected to contain
+ * the coords sorted slice by slice.
+ * \param isQuad specifies presence of quadratic cells.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::buildExtrudedMeshFromThisLowLev(int nbOfNodesOf1Lev, bool isQuad) const
+{
+ int nbOf1DCells=getNumberOfNodes()/nbOfNodesOf1Lev-1;
+ int nbOf2DCells=getNumberOfCells();
+ int nbOf3DCells=nbOf2DCells*nbOf1DCells;
+ MEDCouplingUMesh *ret=MEDCouplingUMesh::New("Extruded",getMeshDimension()+1);
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New();
+ newConnI->alloc(nbOf3DCells+1,1);
+ int *newConnIPtr=newConnI->getPointer();
+ *newConnIPtr++=0;
+ std::vector<int> newc;
+ for(int j=0;j<nbOf2DCells;j++)
+ {
+ AppendExtrudedCell(conn+connI[j],conn+connI[j+1],nbOfNodesOf1Lev,isQuad,newc);
+ *newConnIPtr++=(int)newc.size();
+ }
+ newConn->alloc((int)(newc.size())*nbOf1DCells,1);
+ int *newConnPtr=newConn->getPointer();
+ int deltaPerLev=isQuad?2*nbOfNodesOf1Lev:nbOfNodesOf1Lev;
+ newConnIPtr=newConnI->getPointer();
+ for(int iz=0;iz<nbOf1DCells;iz++)
+ {
+ if(iz!=0)
+ std::transform(newConnIPtr+1,newConnIPtr+1+nbOf2DCells,newConnIPtr+1+iz*nbOf2DCells,std::bind2nd(std::plus<int>(),newConnIPtr[iz*nbOf2DCells]));
+ for(std::vector<int>::const_iterator iter=newc.begin();iter!=newc.end();iter++,newConnPtr++)
+ {
+ int icell=(int)(iter-newc.begin());
+ if(std::find(newConnIPtr,newConnIPtr+nbOf2DCells,icell)==newConnIPtr+nbOf2DCells)
+ {
+ if(*iter!=-1)
+ *newConnPtr=(*iter)+iz*deltaPerLev;
+ else
+ *newConnPtr=-1;
+ }
+ else
+ *newConnPtr=(*iter);
+ }
+ }
+ ret->setConnectivity(newConn,newConnI,true);
+ ret->setCoords(getCoords());
+ return ret;
+}
+
+/*!
+ * Checks if \a this mesh is constituted by only quadratic cells.
+ * \return bool - \c true if there are only quadratic cells in \a this mesh.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ */
+bool MEDCouplingUMesh::isFullyQuadratic() const
+{
+ checkFullyDefined();
+ bool ret=true;
+ int nbOfCells=getNumberOfCells();
+ for(int i=0;i<nbOfCells && ret;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
+ ret=cm.isQuadratic();
+ }
+ return ret;
+}
+
+/*!
+ * Checks if \a this mesh includes any quadratic cell.
+ * \return bool - \c true if there is at least one quadratic cells in \a this mesh.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ */
+bool MEDCouplingUMesh::isPresenceOfQuadratic() const
+{
+ checkFullyDefined();
+ bool ret=false;
+ int nbOfCells=getNumberOfCells();
+ for(int i=0;i<nbOfCells && !ret;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
+ ret=cm.isQuadratic();
+ }
+ return ret;
+}
+
+/*!
+ * Converts all quadratic cells to linear ones. If there are no quadratic cells in \a
+ * this mesh, it remains unchanged.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ */
+void MEDCouplingUMesh::convertQuadraticCellsToLinear()
+{
+ checkFullyDefined();
+ int nbOfCells=getNumberOfCells();
+ int delta=0;
+ const int *iciptr=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
+ if(cm.isQuadratic())
+ {
+ INTERP_KERNEL::NormalizedCellType typel=cm.getLinearType();
+ const INTERP_KERNEL::CellModel& cml=INTERP_KERNEL::CellModel::GetCellModel(typel);
+ if(!cml.isDynamic())
+ delta+=cm.getNumberOfNodes()-cml.getNumberOfNodes();
+ else
+ delta+=(iciptr[i+1]-iciptr[i]-1)/2;
+ }
+ }
+ if(delta==0)
+ return ;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New();
+ const int *icptr=_nodal_connec->getConstPointer();
+ newConn->alloc(getMeshLength()-delta,1);
+ newConnI->alloc(nbOfCells+1,1);
+ int *ocptr=newConn->getPointer();
+ int *ociptr=newConnI->getPointer();
+ *ociptr=0;
+ _types.clear();
+ for(int i=0;i<nbOfCells;i++,ociptr++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)icptr[iciptr[i]];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
+ if(!cm.isQuadratic())
+ {
+ _types.insert(type);
+ ocptr=std::copy(icptr+iciptr[i],icptr+iciptr[i+1],ocptr);
+ ociptr[1]=ociptr[0]+iciptr[i+1]-iciptr[i];
+ }
+ else
+ {
+ INTERP_KERNEL::NormalizedCellType typel=cm.getLinearType();
+ _types.insert(typel);
+ const INTERP_KERNEL::CellModel& cml=INTERP_KERNEL::CellModel::GetCellModel(typel);
+ int newNbOfNodes=cml.getNumberOfNodes();
+ if(cml.isDynamic())
+ newNbOfNodes=(iciptr[i+1]-iciptr[i]-1)/2;
+ *ocptr++=(int)typel;
+ ocptr=std::copy(icptr+iciptr[i]+1,icptr+iciptr[i]+newNbOfNodes+1,ocptr);
+ ociptr[1]=ociptr[0]+newNbOfNodes+1;
+ }
+ }
+ setConnectivity(newConn,newConnI,false);
+}
+
+/*!
+ * This method converts all linear cell in \a this to quadratic one.
+ * Contrary to MEDCouplingUMesh::convertQuadraticCellsToLinear method, here it is needed to specify the target
+ * type of cells expected. For example INTERP_KERNEL::NORM_TRI3 can be converted to INTERP_KERNEL::NORM_TRI6 if \a conversionType is equal to 0 (the default)
+ * or to INTERP_KERNEL::NORM_TRI7 if \a conversionType is equal to 1. All non linear cells and polyhedron in \a this are let untouched.
+ * Contrary to MEDCouplingUMesh::convertQuadraticCellsToLinear method, the coordinates in \a this can be become bigger. All created nodes will be put at the
+ * end of the existing coordinates.
+ *
+ * \param [in] conversionType specifies the type of conversion expected. Only 0 (default) and 1 are supported presently. 0 those that creates the 'most' simple
+ * corresponding quadratic cells. 1 is those creating the 'most' complex.
+ * \return a newly created DataArrayInt instance that the caller should deal with containing cell ids of converted cells.
+ *
+ * \throw if \a this is not fully defined. It throws too if \a conversionType is not in [0,1].
+ *
+ * \sa MEDCouplingUMesh::convertQuadraticCellsToLinear
+ */
+DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic(int conversionType)
+{
+ DataArrayInt *conn=0,*connI=0;
+ DataArrayDouble *coords=0;
+ std::set<INTERP_KERNEL::NormalizedCellType> types;
+ checkFullyDefined();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret,connSafe,connISafe;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coordsSafe;
+ int meshDim=getMeshDimension();
+ switch(conversionType)
+ {
+ case 0:
+ switch(meshDim)
+ {
+ case 1:
+ ret=convertLinearCellsToQuadratic1D0(conn,connI,coords,types);
+ connSafe=conn; connISafe=connI; coordsSafe=coords;
+ break;
+ case 2:
+ ret=convertLinearCellsToQuadratic2D0(conn,connI,coords,types);
+ connSafe=conn; connISafe=connI; coordsSafe=coords;
+ break;
+ case 3:
+ ret=convertLinearCellsToQuadratic3D0(conn,connI,coords,types);
+ connSafe=conn; connISafe=connI; coordsSafe=coords;
+ break;
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion of type 0 mesh dimensions available are [1,2,3] !");
+ }
+ break;
+ case 1:
+ {
+ switch(meshDim)
+ {
+ case 1:
+ ret=convertLinearCellsToQuadratic1D0(conn,connI,coords,types);//it is not a bug. In 1D policy 0 and 1 are equals
+ connSafe=conn; connISafe=connI; coordsSafe=coords;
+ break;
+ case 2:
+ ret=convertLinearCellsToQuadratic2D1(conn,connI,coords,types);
+ connSafe=conn; connISafe=connI; coordsSafe=coords;
+ break;
+ case 3:
+ ret=convertLinearCellsToQuadratic3D1(conn,connI,coords,types);
+ connSafe=conn; connISafe=connI; coordsSafe=coords;
+ break;
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion of type 1 mesh dimensions available are [1,2,3] !");
+ }
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion type available are 0 (default, the simplest) and 1 (the most complex) !");
+ }
+ setConnectivity(connSafe,connISafe,false);
+ _types=types;
+ setCoords(coordsSafe);
+ return ret.retn();
+}
+
+/*!
+ * Implementes \a conversionType 0 for meshes with meshDim = 1, of MEDCouplingUMesh::convertLinearCellsToQuadratic method.
+ * \return a newly created DataArrayInt instance that the caller should deal with containing cell ids of converted cells.
+ * \sa MEDCouplingUMesh::convertLinearCellsToQuadratic.
+ */
+DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic1D0(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set<INTERP_KERNEL::NormalizedCellType>& types) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> bary=getBarycenterAndOwner();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New(); newConn->alloc(0,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New(); newConnI->alloc(1,1); newConnI->setIJ(0,0,0);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(0,1);
+ int nbOfCells=getNumberOfCells();
+ int nbOfNodes=getNumberOfNodes();
+ const int *cPtr=_nodal_connec->getConstPointer();
+ const int *icPtr=_nodal_connec_index->getConstPointer();
+ int lastVal=0,offset=nbOfNodes;
+ for(int i=0;i<nbOfCells;i++,icPtr++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)cPtr[*icPtr];
+ if(type==INTERP_KERNEL::NORM_SEG2)
+ {
+ types.insert(INTERP_KERNEL::NORM_SEG3);
+ newConn->pushBackSilent((int)INTERP_KERNEL::NORM_SEG3);
+ newConn->pushBackValsSilent(cPtr+icPtr[0]+1,cPtr+icPtr[0]+3);
+ newConn->pushBackSilent(offset++);
+ lastVal+=4;
+ newConnI->pushBackSilent(lastVal);
+ ret->pushBackSilent(i);
+ }
+ else
+ {
+ types.insert(type);
+ lastVal+=(icPtr[1]-icPtr[0]);
+ newConnI->pushBackSilent(lastVal);
+ newConn->pushBackValsSilent(cPtr+icPtr[0],cPtr+icPtr[1]);
+ }
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp=bary->selectByTupleIdSafe(ret->begin(),ret->end());
+ coords=DataArrayDouble::Aggregate(getCoords(),tmp); conn=newConn.retn(); connI=newConnI.retn();
+ return ret.retn();
+}
+
+DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic2DAnd3D0(const MEDCouplingUMesh *m1D, const DataArrayInt *desc, const DataArrayInt *descI, DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set<INTERP_KERNEL::NormalizedCellType>& types) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New(); newConn->alloc(0,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New(); newConnI->alloc(1,1); newConnI->setIJ(0,0,0);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(0,1);
+ //
+ const int *descPtr(desc->begin()),*descIPtr(descI->begin());
+ DataArrayInt *conn1D=0,*conn1DI=0;
+ std::set<INTERP_KERNEL::NormalizedCellType> types1D;
+ DataArrayDouble *coordsTmp=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret1D=m1D->convertLinearCellsToQuadratic1D0(conn1D,conn1DI,coordsTmp,types1D); ret1D=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coordsTmpSafe(coordsTmp);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> conn1DSafe(conn1D),conn1DISafe(conn1DI);
+ const int *c1DPtr=conn1D->begin();
+ const int *c1DIPtr=conn1DI->begin();
+ int nbOfCells=getNumberOfCells();
+ const int *cPtr=_nodal_connec->getConstPointer();
+ const int *icPtr=_nodal_connec_index->getConstPointer();
+ int lastVal=0;
+ for(int i=0;i<nbOfCells;i++,icPtr++,descIPtr++)
+ {
+ INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)cPtr[*icPtr];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
+ if(!cm.isQuadratic())
+ {
+ INTERP_KERNEL::NormalizedCellType typ2=cm.getQuadraticType();
+ types.insert(typ2); newConn->pushBackSilent(typ2);
+ newConn->pushBackValsSilent(cPtr+icPtr[0]+1,cPtr+icPtr[1]);
+ for(const int *d=descPtr+descIPtr[0];d!=descPtr+descIPtr[1];d++)
+ newConn->pushBackSilent(c1DPtr[c1DIPtr[*d]+3]);
+ lastVal+=(icPtr[1]-icPtr[0])+(descIPtr[1]-descIPtr[0]);
+ newConnI->pushBackSilent(lastVal);
+ ret->pushBackSilent(i);
+ }
+ else
+ {
+ types.insert(typ);
+ lastVal+=(icPtr[1]-icPtr[0]);
+ newConnI->pushBackSilent(lastVal);
+ newConn->pushBackValsSilent(cPtr+icPtr[0],cPtr+icPtr[1]);
+ }
+ }
+ conn=newConn.retn(); connI=newConnI.retn(); coords=coordsTmpSafe.retn();
+ return ret.retn();
+}
+
+/*!
+ * Implementes \a conversionType 0 for meshes with meshDim = 2, of MEDCouplingUMesh::convertLinearCellsToQuadratic method.
+ * \return a newly created DataArrayInt instance that the caller should deal with containing cell ids of converted cells.
+ * \sa MEDCouplingUMesh::convertLinearCellsToQuadratic.
+ */
+DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic2D0(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set<INTERP_KERNEL::NormalizedCellType>& types) const
+{
+
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc(DataArrayInt::New()),descI(DataArrayInt::New()),tmp2(DataArrayInt::New()),tmp3(DataArrayInt::New());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m1D=buildDescendingConnectivity(desc,descI,tmp2,tmp3); tmp2=0; tmp3=0;
+ return convertLinearCellsToQuadratic2DAnd3D0(m1D,desc,descI,conn,connI,coords,types);
+}
+
+DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic2D1(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set<INTERP_KERNEL::NormalizedCellType>& types) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc(DataArrayInt::New()),descI(DataArrayInt::New()),tmp2(DataArrayInt::New()),tmp3(DataArrayInt::New());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m1D=buildDescendingConnectivity(desc,descI,tmp2,tmp3); tmp2=0; tmp3=0;
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New(); newConn->alloc(0,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New(); newConnI->alloc(1,1); newConnI->setIJ(0,0,0);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(0,1);
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> bary=getBarycenterAndOwner();
+ const int *descPtr(desc->begin()),*descIPtr(descI->begin());
+ DataArrayInt *conn1D=0,*conn1DI=0;
+ std::set<INTERP_KERNEL::NormalizedCellType> types1D;
+ DataArrayDouble *coordsTmp=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret1D=m1D->convertLinearCellsToQuadratic1D0(conn1D,conn1DI,coordsTmp,types1D); ret1D=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coordsTmpSafe(coordsTmp);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> conn1DSafe(conn1D),conn1DISafe(conn1DI);
+ const int *c1DPtr=conn1D->begin();
+ const int *c1DIPtr=conn1DI->begin();
+ int nbOfCells=getNumberOfCells();
+ const int *cPtr=_nodal_connec->getConstPointer();
+ const int *icPtr=_nodal_connec_index->getConstPointer();
+ int lastVal=0,offset=coordsTmpSafe->getNumberOfTuples();
+ for(int i=0;i<nbOfCells;i++,icPtr++,descIPtr++)
+ {
+ INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)cPtr[*icPtr];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
+ if(!cm.isQuadratic())
+ {
+ INTERP_KERNEL::NormalizedCellType typ2=cm.getQuadraticType2();
+ types.insert(typ2); newConn->pushBackSilent(typ2);
+ newConn->pushBackValsSilent(cPtr+icPtr[0]+1,cPtr+icPtr[1]);
+ for(const int *d=descPtr+descIPtr[0];d!=descPtr+descIPtr[1];d++)
+ newConn->pushBackSilent(c1DPtr[c1DIPtr[*d]+3]);
+ newConn->pushBackSilent(offset+ret->getNumberOfTuples());
+ lastVal+=(icPtr[1]-icPtr[0])+(descIPtr[1]-descIPtr[0])+1;
+ newConnI->pushBackSilent(lastVal);
+ ret->pushBackSilent(i);
+ }
+ else
+ {
+ types.insert(typ);
+ lastVal+=(icPtr[1]-icPtr[0]);
+ newConnI->pushBackSilent(lastVal);
+ newConn->pushBackValsSilent(cPtr+icPtr[0],cPtr+icPtr[1]);
+ }
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp=bary->selectByTupleIdSafe(ret->begin(),ret->end());
+ coords=DataArrayDouble::Aggregate(coordsTmpSafe,tmp); conn=newConn.retn(); connI=newConnI.retn();
+ return ret.retn();
+}
+
+/*!
+ * Implementes \a conversionType 0 for meshes with meshDim = 3, of MEDCouplingUMesh::convertLinearCellsToQuadratic method.
+ * \return a newly created DataArrayInt instance that the caller should deal with containing cell ids of converted cells.
+ * \sa MEDCouplingUMesh::convertLinearCellsToQuadratic.
+ */
+DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic3D0(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set<INTERP_KERNEL::NormalizedCellType>& types) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc(DataArrayInt::New()),descI(DataArrayInt::New()),tmp2(DataArrayInt::New()),tmp3(DataArrayInt::New());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m1D=explode3DMeshTo1D(desc,descI,tmp2,tmp3); tmp2=0; tmp3=0;
+ return convertLinearCellsToQuadratic2DAnd3D0(m1D,desc,descI,conn,connI,coords,types);
+}
+
+DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic3D1(DataArrayInt *&conn, DataArrayInt *&connI, DataArrayDouble *& coords, std::set<INTERP_KERNEL::NormalizedCellType>& types) const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc2(DataArrayInt::New()),desc2I(DataArrayInt::New()),tmp2(DataArrayInt::New()),tmp3(DataArrayInt::New());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m2D=buildDescendingConnectivityGen<MinusOneSonsGeneratorBiQuadratic>(desc2,desc2I,tmp2,tmp3,MEDCouplingFastNbrer); tmp2=0; tmp3=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc1(DataArrayInt::New()),desc1I(DataArrayInt::New()),tmp4(DataArrayInt::New()),tmp5(DataArrayInt::New());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m1D=explode3DMeshTo1D(desc1,desc1I,tmp4,tmp5); tmp4=0; tmp5=0;
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New(); newConn->alloc(0,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New(); newConnI->alloc(1,1); newConnI->setIJ(0,0,0);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New(),ret2=DataArrayInt::New(); ret->alloc(0,1); ret2->alloc(0,1);
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> bary=getBarycenterAndOwner();
+ const int *descPtr(desc1->begin()),*descIPtr(desc1I->begin()),*desc2Ptr(desc2->begin()),*desc2IPtr(desc2I->begin());
+ DataArrayInt *conn1D=0,*conn1DI=0,*conn2D=0,*conn2DI=0;
+ std::set<INTERP_KERNEL::NormalizedCellType> types1D,types2D;
+ DataArrayDouble *coordsTmp=0,*coordsTmp2=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret1D=m1D->convertLinearCellsToQuadratic1D0(conn1D,conn1DI,coordsTmp,types1D); ret1D=DataArrayInt::New(); ret1D->alloc(0,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> conn1DSafe(conn1D),conn1DISafe(conn1DI);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coordsTmpSafe(coordsTmp);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret2D=m2D->convertLinearCellsToQuadratic2D1(conn2D,conn2DI,coordsTmp2,types2D); ret2D=DataArrayInt::New(); ret2D->alloc(0,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coordsTmp2Safe(coordsTmp2);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> conn2DSafe(conn2D),conn2DISafe(conn2DI);
+ const int *c1DPtr=conn1D->begin(),*c1DIPtr=conn1DI->begin(),*c2DPtr=conn2D->begin(),*c2DIPtr=conn2DI->begin();
+ int nbOfCells=getNumberOfCells();
+ const int *cPtr=_nodal_connec->getConstPointer();
+ const int *icPtr=_nodal_connec_index->getConstPointer();
+ int lastVal=0,offset=coordsTmpSafe->getNumberOfTuples();
+ for(int i=0;i<nbOfCells;i++,icPtr++,descIPtr++,desc2IPtr++)
+ {
+ INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)cPtr[*icPtr];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
+ if(!cm.isQuadratic())
+ {
+ INTERP_KERNEL::NormalizedCellType typ2=cm.getQuadraticType2();
+ if(typ2==INTERP_KERNEL::NORM_ERROR)
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::convertLinearCellsToQuadratic3D1 : On cell #" << i << " the linear cell type does not support advanced quadratization !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ types.insert(typ2); newConn->pushBackSilent(typ2);
+ newConn->pushBackValsSilent(cPtr+icPtr[0]+1,cPtr+icPtr[1]);
+ for(const int *d=descPtr+descIPtr[0];d!=descPtr+descIPtr[1];d++)
+ newConn->pushBackSilent(c1DPtr[c1DIPtr[*d]+3]);
+ for(const int *d=desc2Ptr+desc2IPtr[0];d!=desc2Ptr+desc2IPtr[1];d++)
+ {
+ int nodeId2=c2DPtr[c2DIPtr[(*d)+1]-1];
+ int tmpPos=newConn->getNumberOfTuples();
+ newConn->pushBackSilent(nodeId2);
+ ret2D->pushBackSilent(nodeId2); ret1D->pushBackSilent(tmpPos);
+ }
+ newConn->pushBackSilent(offset+ret->getNumberOfTuples());
+ lastVal+=(icPtr[1]-icPtr[0])+(descIPtr[1]-descIPtr[0])+(desc2IPtr[1]-desc2IPtr[0])+1;
+ newConnI->pushBackSilent(lastVal);
+ ret->pushBackSilent(i);
+ }
+ else
+ {
+ types.insert(typ);
+ lastVal+=(icPtr[1]-icPtr[0]);
+ newConnI->pushBackSilent(lastVal);
+ newConn->pushBackValsSilent(cPtr+icPtr[0],cPtr+icPtr[1]);
+ }
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> diffRet2D=ret2D->getDifferentValues();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2nRet2D=diffRet2D->invertArrayN2O2O2N(coordsTmp2Safe->getNumberOfTuples());
+ coordsTmp2Safe=coordsTmp2Safe->selectByTupleId(diffRet2D->begin(),diffRet2D->end());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp=bary->selectByTupleIdSafe(ret->begin(),ret->end());
+ std::vector<const DataArrayDouble *> v(3); v[0]=coordsTmpSafe; v[1]=coordsTmp2Safe; v[2]=tmp;
+ int *c=newConn->getPointer();
+ const int *cI(newConnI->begin());
+ for(const int *elt=ret1D->begin();elt!=ret1D->end();elt++)
+ c[*elt]=o2nRet2D->getIJ(c[*elt],0)+offset;
+ offset=coordsTmp2Safe->getNumberOfTuples();
+ for(const int *elt=ret->begin();elt!=ret->end();elt++)
+ c[cI[(*elt)+1]-1]+=offset;
+ coords=DataArrayDouble::Aggregate(v); conn=newConn.retn(); connI=newConnI.retn();
+ return ret.retn();
+}
+
+/*!
+ * Tessellates \a this 2D mesh by dividing not straight edges of quadratic faces,
+ * so that the number of cells remains the same. Quadratic faces are converted to
+ * polygons. This method works only for 2D meshes in
+ * 2D space. If no cells are quadratic (INTERP_KERNEL::NORM_QUAD8,
+ * INTERP_KERNEL::NORM_TRI6, INTERP_KERNEL::NORM_QPOLYG ), \a this mesh remains unchanged.
+ * \warning This method can lead to a huge amount of nodes if \a eps is very low.
+ * \param [in] eps - specifies the maximal angle (in radians) between 2 sub-edges of
+ * a polylinized edge constituting the input polygon.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If \a this->getMeshDimension() != 2.
+ * \throw If \a this->getSpaceDimension() != 2.
+ */
+void MEDCouplingUMesh::tessellate2D(double eps)
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=2 || getSpaceDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2D works on umeshes with meshdim equal to 2 and spaceDim equal to 2 too!");
+ double epsa=fabs(eps);
+ if(epsa<std::numeric_limits<double>::min())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2DCurve : epsilon is null ! Please specify a higher epsilon. If too tiny it can lead to a huge amount of nodes and memory !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> descIndx1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDesc1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revDescIndx1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mDesc=buildDescendingConnectivity2(desc1,descIndx1,revDesc1,revDescIndx1);
+ revDesc1=0; revDescIndx1=0;
+ mDesc->tessellate2DCurve(eps);
+ subDivide2DMesh(mDesc->_nodal_connec->getConstPointer(),mDesc->_nodal_connec_index->getConstPointer(),desc1->getConstPointer(),descIndx1->getConstPointer());
+ setCoords(mDesc->getCoords());
+}
+
+/*!
+ * Tessellates \a this 1D mesh in 2D space by dividing not straight quadratic edges.
+ * \warning This method can lead to a huge amount of nodes if \a eps is very low.
+ * \param [in] eps - specifies the maximal angle (in radian) between 2 sub-edges of
+ * a sub-divided edge.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If \a this->getMeshDimension() != 1.
+ * \throw If \a this->getSpaceDimension() != 2.
+ */
+void MEDCouplingUMesh::tessellate2DCurve(double eps)
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=1 || getSpaceDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2DCurve works on umeshes with meshdim equal to 1 and spaceDim equal to 2 too!");
+ double epsa=fabs(eps);
+ if(epsa<std::numeric_limits<double>::min())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2DCurve : epsilon is null ! Please specify a higher epsilon. If too tiny it can lead to a huge amount of nodes and memory !");
+ INTERP_KERNEL::QUADRATIC_PLANAR::_arc_detection_precision=1.e-10;
+ int nbCells=getNumberOfCells();
+ int nbNodes=getNumberOfNodes();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coords=_coords->getConstPointer();
+ std::vector<double> addCoo;
+ std::vector<int> newConn;//no direct DataArrayInt because interface with Geometric2D
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI(DataArrayInt::New());
+ newConnI->alloc(nbCells+1,1);
+ int *newConnIPtr=newConnI->getPointer();
+ *newConnIPtr=0;
+ int tmp1[3];
+ INTERP_KERNEL::Node *tmp2[3];
+ std::set<INTERP_KERNEL::NormalizedCellType> types;
+ for(int i=0;i<nbCells;i++,newConnIPtr++)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
+ if(cm.isQuadratic())
+ {//assert(connI[i+1]-connI[i]-1==3)
+ tmp1[0]=conn[connI[i]+1+0]; tmp1[1]=conn[connI[i]+1+1]; tmp1[2]=conn[connI[i]+1+2];
+ tmp2[0]=new INTERP_KERNEL::Node(coords[2*tmp1[0]],coords[2*tmp1[0]+1]);
+ tmp2[1]=new INTERP_KERNEL::Node(coords[2*tmp1[1]],coords[2*tmp1[1]+1]);
+ tmp2[2]=new INTERP_KERNEL::Node(coords[2*tmp1[2]],coords[2*tmp1[2]+1]);
+ INTERP_KERNEL::EdgeArcCircle *eac=INTERP_KERNEL::EdgeArcCircle::BuildFromNodes(tmp2[0],tmp2[2],tmp2[1]);
+ if(eac)
+ {
+ eac->tesselate(tmp1,nbNodes,epsa,newConn,addCoo);
+ types.insert((INTERP_KERNEL::NormalizedCellType)newConn[newConnIPtr[0]]);
+ delete eac;
+ newConnIPtr[1]=(int)newConn.size();
+ }
+ else
+ {
+ types.insert(INTERP_KERNEL::NORM_SEG2);
+ newConn.push_back(INTERP_KERNEL::NORM_SEG2);
+ newConn.insert(newConn.end(),conn+connI[i]+1,conn+connI[i]+3);
+ newConnIPtr[1]=newConnIPtr[0]+3;
+ }
+ }
+ else
+ {
+ types.insert((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
+ newConn.insert(newConn.end(),conn+connI[i],conn+connI[i+1]);
+ newConnIPtr[1]=newConnIPtr[0]+3;
+ }
+ }
+ if(addCoo.empty() && ((int)newConn.size())==_nodal_connec->getNumberOfTuples())//nothing happens during tessellation : no update needed
+ return ;
+ _types=types;
+ DataArrayInt::SetArrayIn(newConnI,_nodal_connec_index);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnArr=DataArrayInt::New();
+ newConnArr->alloc((int)newConn.size(),1);
+ std::copy(newConn.begin(),newConn.end(),newConnArr->getPointer());
+ DataArrayInt::SetArrayIn(newConnArr,_nodal_connec);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> newCoords=DataArrayDouble::New();
+ newCoords->alloc(nbNodes+((int)addCoo.size())/2,2);
+ double *work=std::copy(_coords->begin(),_coords->end(),newCoords->getPointer());
+ std::copy(addCoo.begin(),addCoo.end(),work);
+ DataArrayDouble::SetArrayIn(newCoords,_coords);
+ updateTime();
+}
+
+/*!
+ * Divides every cell of \a this mesh into simplices (triangles in 2D and tetrahedra in 3D).
+ * In addition, returns an array mapping new cells to old ones. <br>
+ * This method typically increases the number of cells in \a this mesh
+ * but the number of nodes remains \b unchanged.
+ * That's why the 3D splitting policies
+ * INTERP_KERNEL::GENERAL_24 and INTERP_KERNEL::GENERAL_48 are not available here.
+ * \param [in] policy - specifies a pattern used for splitting.
+ * The semantic of \a policy is:
+ * - 0 - to split QUAD4 by cutting it along 0-2 diagonal (for 2D mesh only).
+ * - 1 - to split QUAD4 by cutting it along 1-3 diagonal (for 2D mesh only).
+ * - INTERP_KERNEL::PLANAR_FACE_5 - to split HEXA8 into 5 TETRA4 (for 3D mesh only).
+ * - INTERP_KERNEL::PLANAR_FACE_6 - to split HEXA8 into 6 TETRA4 (for 3D mesh only).
+ * \return DataArrayInt * - a new instance of DataArrayInt holding, for each new cell,
+ * an id of old cell producing it. The caller is to delete this array using
+ * decrRef() as it is no more needed.
+ * \throw If \a policy is 0 or 1 and \a this->getMeshDimension() != 2.
+ * \throw If \a policy is INTERP_KERNEL::PLANAR_FACE_5 or INTERP_KERNEL::PLANAR_FACE_6
+ * and \a this->getMeshDimension() != 3.
+ * \throw If \a policy is not one of the four discussed above.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \sa MEDCouplingUMesh::tetrahedrize, MEDCoupling1SGTUMesh::sortHexa8EachOther
+ */
+DataArrayInt *MEDCouplingUMesh::simplexize(int policy)
+{
+ switch(policy)
+ {
+ case 0:
+ return simplexizePol0();
+ case 1:
+ return simplexizePol1();
+ case (int) INTERP_KERNEL::PLANAR_FACE_5:
+ return simplexizePlanarFace5();
+ case (int) INTERP_KERNEL::PLANAR_FACE_6:
+ return simplexizePlanarFace6();
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplexize : unrecognized policy ! Must be :\n - 0 or 1 (only available for meshdim=2) \n - PLANAR_FACE_5, PLANAR_FACE_6 (only for meshdim=3)");
+ }
+}
+
+/*!
+ * Checks if \a this mesh is constituted by simplex cells only. Simplex cells are:
+ * - 1D: INTERP_KERNEL::NORM_SEG2
+ * - 2D: INTERP_KERNEL::NORM_TRI3
+ * - 3D: INTERP_KERNEL::NORM_TETRA4.
+ *
+ * This method is useful for users that need to use P1 field services as
+ * MEDCouplingFieldDouble::getValueOn(), MEDCouplingField::buildMeasureField() etc.
+ * All these methods need mesh support containing only simplex cells.
+ * \return bool - \c true if there are only simplex cells in \a this mesh.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If \a this->getMeshDimension() < 1.
+ */
+bool MEDCouplingUMesh::areOnlySimplexCells() const
+{
+ checkFullyDefined();
+ int mdim=getMeshDimension();
+ if(mdim<1 || mdim>3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::areOnlySimplexCells : only available with meshes having a meshdim 1, 2 or 3 !");
+ int nbCells=getNumberOfCells();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<nbCells;i++)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
+ if(!cm.isSimplex())
+ return false;
+ }
+ return true;
+}
+
+/*!
+ * This method implements policy 0 of virtual method ParaMEDMEM::MEDCouplingUMesh::simplexize.
+ */
+DataArrayInt *MEDCouplingUMesh::simplexizePol0()
+{
+ checkConnectivityFullyDefined();
+ if(getMeshDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplexizePol0 : this policy is only available for mesh with meshdim == 2 !");
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ int nbOfCutCells=getNumberOfCellsWithType(INTERP_KERNEL::NORM_QUAD4);
+ ret->alloc(nbOfCells+nbOfCutCells,1);
+ if(nbOfCutCells==0) { ret->iota(0); return ret.retn(); }
+ int *retPt=ret->getPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New();
+ newConnI->alloc(nbOfCells+nbOfCutCells+1,1);
+ newConn->alloc(getMeshLength()+3*nbOfCutCells,1);
+ int *pt=newConn->getPointer();
+ int *ptI=newConnI->getPointer();
+ ptI[0]=0;
+ const int *oldc=_nodal_connec->getConstPointer();
+ const int *ci=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,ci++)
+ {
+ if((INTERP_KERNEL::NormalizedCellType)oldc[ci[0]]==INTERP_KERNEL::NORM_QUAD4)
+ {
+ const int tmp[8]={(int)INTERP_KERNEL::NORM_TRI3,oldc[ci[0]+1],oldc[ci[0]+2],oldc[ci[0]+3],
+ (int)INTERP_KERNEL::NORM_TRI3,oldc[ci[0]+1],oldc[ci[0]+3],oldc[ci[0]+4]};
+ pt=std::copy(tmp,tmp+8,pt);
+ ptI[1]=ptI[0]+4;
+ ptI[2]=ptI[0]+8;
+ *retPt++=i;
+ *retPt++=i;
+ ptI+=2;
+ }
+ else
+ {
+ pt=std::copy(oldc+ci[0],oldc+ci[1],pt);
+ ptI[1]=ptI[0]+ci[1]-ci[0];
+ ptI++;
+ *retPt++=i;
+ }
+ }
+ _nodal_connec->decrRef();
+ _nodal_connec=newConn.retn();
+ _nodal_connec_index->decrRef();
+ _nodal_connec_index=newConnI.retn();
+ computeTypes();
+ updateTime();
+ return ret.retn();
+}
+
+/*!
+ * This method implements policy 1 of virtual method ParaMEDMEM::MEDCouplingUMesh::simplexize.
+ */
+DataArrayInt *MEDCouplingUMesh::simplexizePol1()
+{
+ checkConnectivityFullyDefined();
+ if(getMeshDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplexizePol0 : this policy is only available for mesh with meshdim == 2 !");
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ int nbOfCutCells=getNumberOfCellsWithType(INTERP_KERNEL::NORM_QUAD4);
+ ret->alloc(nbOfCells+nbOfCutCells,1);
+ if(nbOfCutCells==0) { ret->iota(0); return ret.retn(); }
+ int *retPt=ret->getPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New();
+ newConnI->alloc(nbOfCells+nbOfCutCells+1,1);
+ newConn->alloc(getMeshLength()+3*nbOfCutCells,1);
+ int *pt=newConn->getPointer();
+ int *ptI=newConnI->getPointer();
+ ptI[0]=0;
+ const int *oldc=_nodal_connec->getConstPointer();
+ const int *ci=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,ci++)
+ {
+ if((INTERP_KERNEL::NormalizedCellType)oldc[ci[0]]==INTERP_KERNEL::NORM_QUAD4)
+ {
+ const int tmp[8]={(int)INTERP_KERNEL::NORM_TRI3,oldc[ci[0]+1],oldc[ci[0]+2],oldc[ci[0]+4],
+ (int)INTERP_KERNEL::NORM_TRI3,oldc[ci[0]+2],oldc[ci[0]+3],oldc[ci[0]+4]};
+ pt=std::copy(tmp,tmp+8,pt);
+ ptI[1]=ptI[0]+4;
+ ptI[2]=ptI[0]+8;
+ *retPt++=i;
+ *retPt++=i;
+ ptI+=2;
+ }
+ else
+ {
+ pt=std::copy(oldc+ci[0],oldc+ci[1],pt);
+ ptI[1]=ptI[0]+ci[1]-ci[0];
+ ptI++;
+ *retPt++=i;
+ }
+ }
+ _nodal_connec->decrRef();
+ _nodal_connec=newConn.retn();
+ _nodal_connec_index->decrRef();
+ _nodal_connec_index=newConnI.retn();
+ computeTypes();
+ updateTime();
+ return ret.retn();
+}
+
+/*!
+ * This method implements policy INTERP_KERNEL::PLANAR_FACE_5 of virtual method ParaMEDMEM::MEDCouplingUMesh::simplexize.
+ */
+DataArrayInt *MEDCouplingUMesh::simplexizePlanarFace5()
+{
+ checkConnectivityFullyDefined();
+ if(getMeshDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplexizePlanarFace5 : this policy is only available for mesh with meshdim == 3 !");
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ int nbOfCutCells=getNumberOfCellsWithType(INTERP_KERNEL::NORM_HEXA8);
+ ret->alloc(nbOfCells+4*nbOfCutCells,1);
+ if(nbOfCutCells==0) { ret->iota(0); return ret.retn(); }
+ int *retPt=ret->getPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New();
+ newConnI->alloc(nbOfCells+4*nbOfCutCells+1,1);
+ newConn->alloc(getMeshLength()+16*nbOfCutCells,1);//21
+ int *pt=newConn->getPointer();
+ int *ptI=newConnI->getPointer();
+ ptI[0]=0;
+ const int *oldc=_nodal_connec->getConstPointer();
+ const int *ci=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,ci++)
+ {
+ if((INTERP_KERNEL::NormalizedCellType)oldc[ci[0]]==INTERP_KERNEL::NORM_HEXA8)
+ {
+ for(int j=0;j<5;j++,pt+=5,ptI++)
+ {
+ pt[0]=(int)INTERP_KERNEL::NORM_TETRA4;
+ pt[1]=oldc[ci[0]+INTERP_KERNEL::SPLIT_NODES_5_WO[4*j+0]+1]; pt[2]=oldc[ci[0]+INTERP_KERNEL::SPLIT_NODES_5_WO[4*j+1]+1]; pt[3]=oldc[ci[0]+INTERP_KERNEL::SPLIT_NODES_5_WO[4*j+2]+1]; pt[4]=oldc[ci[0]+INTERP_KERNEL::SPLIT_NODES_5_WO[4*j+3]+1];
+ *retPt++=i;
+ ptI[1]=ptI[0]+5;
+ }
+ }
+ else
+ {
+ pt=std::copy(oldc+ci[0],oldc+ci[1],pt);
+ ptI[1]=ptI[0]+ci[1]-ci[0];
+ ptI++;
+ *retPt++=i;
+ }
+ }
+ _nodal_connec->decrRef();
+ _nodal_connec=newConn.retn();
+ _nodal_connec_index->decrRef();
+ _nodal_connec_index=newConnI.retn();
+ computeTypes();
+ updateTime();
+ return ret.retn();
+}
+
+/*!
+ * This method implements policy INTERP_KERNEL::PLANAR_FACE_6 of virtual method ParaMEDMEM::MEDCouplingUMesh::simplexize.
+ */
+DataArrayInt *MEDCouplingUMesh::simplexizePlanarFace6()
+{
+ checkConnectivityFullyDefined();
+ if(getMeshDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplexizePlanarFace6 : this policy is only available for mesh with meshdim == 3 !");
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ int nbOfCutCells=getNumberOfCellsWithType(INTERP_KERNEL::NORM_HEXA8);
+ ret->alloc(nbOfCells+5*nbOfCutCells,1);
+ if(nbOfCutCells==0) { ret->iota(0); return ret.retn(); }
+ int *retPt=ret->getPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConnI=DataArrayInt::New();
+ newConnI->alloc(nbOfCells+5*nbOfCutCells+1,1);
+ newConn->alloc(getMeshLength()+21*nbOfCutCells,1);
+ int *pt=newConn->getPointer();
+ int *ptI=newConnI->getPointer();
+ ptI[0]=0;
+ const int *oldc=_nodal_connec->getConstPointer();
+ const int *ci=_nodal_connec_index->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,ci++)
+ {
+ if((INTERP_KERNEL::NormalizedCellType)oldc[ci[0]]==INTERP_KERNEL::NORM_HEXA8)
+ {
+ for(int j=0;j<6;j++,pt+=5,ptI++)
+ {
+ pt[0]=(int)INTERP_KERNEL::NORM_TETRA4;
+ pt[1]=oldc[ci[0]+INTERP_KERNEL::SPLIT_NODES_6_WO[4*j+0]+1]; pt[2]=oldc[ci[0]+INTERP_KERNEL::SPLIT_NODES_6_WO[4*j+1]+1]; pt[3]=oldc[ci[0]+INTERP_KERNEL::SPLIT_NODES_6_WO[4*j+2]+1]; pt[4]=oldc[ci[0]+INTERP_KERNEL::SPLIT_NODES_6_WO[4*j+3]+1];
+ *retPt++=i;
+ ptI[1]=ptI[0]+5;
+ }
+ }
+ else
+ {
+ pt=std::copy(oldc+ci[0],oldc+ci[1],pt);
+ ptI[1]=ptI[0]+ci[1]-ci[0];
+ ptI++;
+ *retPt++=i;
+ }
+ }
+ _nodal_connec->decrRef();
+ _nodal_connec=newConn.retn();
+ _nodal_connec_index->decrRef();
+ _nodal_connec_index=newConnI.retn();
+ computeTypes();
+ updateTime();
+ return ret.retn();
+}
+
+/*!
+ * This private method is used to subdivide edges of a mesh with meshdim==2. If \a this has no a meshdim equal to 2 an exception will be thrown.
+ * This method completly ignore coordinates.
+ * \param nodeSubdived is the nodal connectivity of subdivision of edges
+ * \param nodeIndxSubdived is the nodal connectivity index of subdivision of edges
+ * \param desc is descending connectivity in format specified in MEDCouplingUMesh::buildDescendingConnectivity2
+ * \param descIndex is descending connectivity index in format specified in MEDCouplingUMesh::buildDescendingConnectivity2
+ */
+void MEDCouplingUMesh::subDivide2DMesh(const int *nodeSubdived, const int *nodeIndxSubdived, const int *desc, const int *descIndex)
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::subDivide2DMesh : works only on umesh with meshdim==2 !");
+ int nbOfCells=getNumberOfCells();
+ int *connI=_nodal_connec_index->getPointer();
+ int newConnLgth=0;
+ for(int i=0;i<nbOfCells;i++,connI++)
+ {
+ int offset=descIndex[i];
+ int nbOfEdges=descIndex[i+1]-offset;
+ //
+ bool ddirect=desc[offset+nbOfEdges-1]>0;
+ int eedgeId=std::abs(desc[offset+nbOfEdges-1])-1;
+ int ref=ddirect?nodeSubdived[nodeIndxSubdived[eedgeId+1]-1]:nodeSubdived[nodeIndxSubdived[eedgeId]+1];
+ for(int j=0;j<nbOfEdges;j++)
+ {
+ bool direct=desc[offset+j]>0;
+ int edgeId=std::abs(desc[offset+j])-1;
+ if(!INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)nodeSubdived[nodeIndxSubdived[edgeId]]).isQuadratic())
+ {
+ int id1=nodeSubdived[nodeIndxSubdived[edgeId]+1];
+ int id2=nodeSubdived[nodeIndxSubdived[edgeId+1]-1];
+ int ref2=direct?id1:id2;
+ if(ref==ref2)
+ {
+ int nbOfSubNodes=nodeIndxSubdived[edgeId+1]-nodeIndxSubdived[edgeId]-1;
+ newConnLgth+=nbOfSubNodes-1;
+ ref=direct?id2:id1;
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::subDivide2DMesh : On polygon #" << i << " edgeid #" << j << " subedges mismatch : end subedge k!=start subedge k+1 !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ else
+ {
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::subDivide2DMesh : this method only subdivides into linear edges !");
+ }
+ }
+ newConnLgth++;//+1 is for cell type
+ connI[1]=newConnLgth;
+ }
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn=DataArrayInt::New();
+ newConn->alloc(newConnLgth,1);
+ int *work=newConn->getPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ *work++=INTERP_KERNEL::NORM_POLYGON;
+ int offset=descIndex[i];
+ int nbOfEdges=descIndex[i+1]-offset;
+ for(int j=0;j<nbOfEdges;j++)
+ {
+ bool direct=desc[offset+j]>0;
+ int edgeId=std::abs(desc[offset+j])-1;
+ if(direct)
+ work=std::copy(nodeSubdived+nodeIndxSubdived[edgeId]+1,nodeSubdived+nodeIndxSubdived[edgeId+1]-1,work);
+ else
+ {
+ int nbOfSubNodes=nodeIndxSubdived[edgeId+1]-nodeIndxSubdived[edgeId]-1;
+ std::reverse_iterator<const int *> it(nodeSubdived+nodeIndxSubdived[edgeId+1]);
+ work=std::copy(it,it+nbOfSubNodes-1,work);
+ }
+ }
+ }
+ DataArrayInt::SetArrayIn(newConn,_nodal_connec);
+ _types.clear();
+ if(nbOfCells>0)
+ _types.insert(INTERP_KERNEL::NORM_POLYGON);
+}
+
+/*!
+ * Converts degenerated 2D or 3D linear cells of \a this mesh into cells of simpler
+ * type. For example an INTERP_KERNEL::NORM_QUAD4 cell having only three unique nodes in
+ * its connectivity is transformed into an INTERP_KERNEL::NORM_TRI3 cell. This method
+ * does \b not perform geometrical checks and checks only nodal connectivity of cells,
+ * so it can be useful to call mergeNodes() before calling this method.
+ * \throw If \a this->getMeshDimension() <= 1.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ */
+void MEDCouplingUMesh::convertDegeneratedCells()
+{
+ checkFullyDefined();
+ if(getMeshDimension()<=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertDegeneratedCells works on umeshes with meshdim equals to 2 or 3 !");
+ int nbOfCells=getNumberOfCells();
+ if(nbOfCells<1)
+ return ;
+ int initMeshLgth=getMeshLength();
+ int *conn=_nodal_connec->getPointer();
+ int *index=_nodal_connec_index->getPointer();
+ int posOfCurCell=0;
+ int newPos=0;
+ int lgthOfCurCell;
+ for(int i=0;i<nbOfCells;i++)
+ {
+ lgthOfCurCell=index[i+1]-posOfCurCell;
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[posOfCurCell];
+ int newLgth;
+ INTERP_KERNEL::NormalizedCellType newType=INTERP_KERNEL::CellSimplify::simplifyDegeneratedCell(type,conn+posOfCurCell+1,lgthOfCurCell-1,
+ conn+newPos+1,newLgth);
+ conn[newPos]=newType;
+ newPos+=newLgth+1;
+ posOfCurCell=index[i+1];
+ index[i+1]=newPos;
+ }
+ if(newPos!=initMeshLgth)
+ _nodal_connec->reAlloc(newPos);
+ computeTypes();
+}
+
+/*!
+ * Finds incorrectly oriented cells of this 2D mesh in 3D space.
+ * A cell is considered to be oriented correctly if an angle between its
+ * normal vector and a given vector is less than \c PI / \c 2.
+ * \param [in] vec - 3 components of the vector specifying the correct orientation of
+ * cells.
+ * \param [in] polyOnly - if \c true, only polygons are checked, else, all cells are
+ * checked.
+ * \param [in,out] cells - a vector returning ids of incorrectly oriented cells. It
+ * is not cleared before filling in.
+ * \throw If \a this->getMeshDimension() != 2.
+ * \throw If \a this->getSpaceDimension() != 3.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_are2DCellsNotCorrectlyOriented "Here is a C++ example".<br>
+ * \ref py_mcumesh_are2DCellsNotCorrectlyOriented "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::are2DCellsNotCorrectlyOriented(const double *vec, bool polyOnly, std::vector<int>& cells) const
+{
+ if(getMeshDimension()!=2 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("Invalid mesh to apply are2DCellsNotCorrectlyOriented on it : must be meshDim==2 and spaceDim==3 !");
+ int nbOfCells=getNumberOfCells();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coordsPtr=_coords->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
+ if(!polyOnly || (type==INTERP_KERNEL::NORM_POLYGON || type==INTERP_KERNEL::NORM_QPOLYG))
+ {
+ bool isQuadratic=INTERP_KERNEL::CellModel::GetCellModel(type).isQuadratic();
+ if(!IsPolygonWellOriented(isQuadratic,vec,conn+connI[i]+1,conn+connI[i+1],coordsPtr))
+ cells.push_back(i);
+ }
+ }
+}
+
+/*!
+ * Reverse connectivity of 2D cells whose orientation is not correct. A cell is
+ * considered to be oriented correctly if an angle between its normal vector and a
+ * given vector is less than \c PI / \c 2.
+ * \param [in] vec - 3 components of the vector specifying the correct orientation of
+ * cells.
+ * \param [in] polyOnly - if \c true, only polygons are checked, else, all cells are
+ * checked.
+ * \throw If \a this->getMeshDimension() != 2.
+ * \throw If \a this->getSpaceDimension() != 3.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_are2DCellsNotCorrectlyOriented "Here is a C++ example".<br>
+ * \ref py_mcumesh_are2DCellsNotCorrectlyOriented "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::orientCorrectly2DCells(const double *vec, bool polyOnly)
+{
+ if(getMeshDimension()!=2 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("Invalid mesh to apply orientCorrectly2DCells on it : must be meshDim==2 and spaceDim==3 !");
+ int nbOfCells=getNumberOfCells();
+ int *conn=_nodal_connec->getPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coordsPtr=_coords->getConstPointer();
+ bool isModified=false;
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
+ if(!polyOnly || (type==INTERP_KERNEL::NORM_POLYGON || type==INTERP_KERNEL::NORM_QPOLYG))
+ {
+ bool isQuadratic(INTERP_KERNEL::CellModel::GetCellModel(type).isQuadratic());
+ if(!IsPolygonWellOriented(isQuadratic,vec,conn+connI[i]+1,conn+connI[i+1],coordsPtr))
+ {
+ isModified=true;
+ if(!isQuadratic)
+ {
+ std::vector<int> tmp(connI[i+1]-connI[i]-2);
+ std::copy(conn+connI[i]+2,conn+connI[i+1],tmp.rbegin());
+ std::copy(tmp.begin(),tmp.end(),conn+connI[i]+2);
+ }
+ else
+ {
+ int sz(((int)(connI[i+1]-connI[i]-1))/2);
+ std::vector<int> tmp0(sz-1),tmp1(sz);
+ std::copy(conn+connI[i]+2,conn+connI[i]+1+sz,tmp0.rbegin());
+ std::copy(conn+connI[i]+1+sz,conn+connI[i+1],tmp1.rbegin());
+ std::copy(tmp0.begin(),tmp0.end(),conn+connI[i]+2);
+ std::copy(tmp1.begin(),tmp1.end(),conn+connI[i]+1+sz);
+ }
+ }
+ }
+ }
+ if(isModified)
+ _nodal_connec->declareAsNew();
+ updateTime();
+}
+
+/*!
+ * Finds incorrectly oriented polyhedral cells, i.e. polyhedrons having correctly
+ * oriented facets. The normal vector of the facet should point out of the cell.
+ * \param [in,out] cells - a vector returning ids of incorrectly oriented cells. It
+ * is not cleared before filling in.
+ * \throw If \a this->getMeshDimension() != 3.
+ * \throw If \a this->getSpaceDimension() != 3.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
+ * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
+ * \endif
+ */
+void MEDCouplingUMesh::arePolyhedronsNotCorrectlyOriented(std::vector<int>& cells) const
+{
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("Invalid mesh to apply arePolyhedronsNotCorrectlyOriented on it : must be meshDim==3 and spaceDim==3 !");
+ int nbOfCells=getNumberOfCells();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coordsPtr=_coords->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
+ if(type==INTERP_KERNEL::NORM_POLYHED)
+ {
+ if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
+ cells.push_back(i);
+ }
+ }
+}
+
+/*!
+ * Tries to fix connectivity of polyhedra, so that normal vector of all facets to point
+ * out of the cell.
+ * \throw If \a this->getMeshDimension() != 3.
+ * \throw If \a this->getSpaceDimension() != 3.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \throw If the reparation fails.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
+ * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
+ * \endif
+ * \sa MEDCouplingUMesh::findAndCorrectBadOriented3DCells
+ */
+void MEDCouplingUMesh::orientCorrectlyPolyhedrons()
+{
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("Invalid mesh to apply orientCorrectlyPolyhedrons on it : must be meshDim==3 and spaceDim==3 !");
+ int nbOfCells=getNumberOfCells();
+ int *conn=_nodal_connec->getPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coordsPtr=_coords->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
+ if(type==INTERP_KERNEL::NORM_POLYHED)
+ {
+ try
+ {
+ if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
+ TryToCorrectPolyhedronOrientation(conn+connI[i]+1,conn+connI[i+1],coordsPtr);
+ }
+ catch(INTERP_KERNEL::Exception& e)
+ {
+ std::ostringstream oss; oss << "Something wrong in polyhedron #" << i << " : " << e.what();
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ }
+ updateTime();
+}
+
+/*!
+ * Finds and fixes incorrectly oriented linear extruded volumes (INTERP_KERNEL::NORM_HEXA8,
+ * INTERP_KERNEL::NORM_PENTA6, INTERP_KERNEL::NORM_HEXGP12 etc) to respect the MED convention
+ * according to which the first facet of the cell should be oriented to have the normal vector
+ * pointing out of cell.
+ * \return DataArrayInt * - a new instance of DataArrayInt holding ids of fixed
+ * cells. The caller is to delete this array using decrRef() as it is no more
+ * needed.
+ * \throw If \a this->getMeshDimension() != 3.
+ * \throw If \a this->getSpaceDimension() != 3.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_findAndCorrectBadOriented3DExtrudedCells "Here is a C++ example".<br>
+ * \ref py_mcumesh_findAndCorrectBadOriented3DExtrudedCells "Here is a Python example".
+ * \endif
+ * \sa MEDCouplingUMesh::findAndCorrectBadOriented3DCells
+ */
+DataArrayInt *MEDCouplingUMesh::findAndCorrectBadOriented3DExtrudedCells()
+{
+ const char msg[]="check3DCellsWellOriented detection works only for 3D cells !";
+ if(getMeshDimension()!=3)
+ throw INTERP_KERNEL::Exception(msg);
+ int spaceDim=getSpaceDimension();
+ if(spaceDim!=3)
+ throw INTERP_KERNEL::Exception(msg);
+ //
+ int nbOfCells=getNumberOfCells();
+ int *conn=_nodal_connec->getPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coo=getCoords()->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cells(DataArrayInt::New()); cells->alloc(0,1);
+ for(int i=0;i<nbOfCells;i++)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
+ if(cm.isExtruded() && !cm.isDynamic() && !cm.isQuadratic())
+ {
+ if(!Is3DExtrudedStaticCellWellOriented(conn+connI[i]+1,conn+connI[i+1],coo))
+ {
+ CorrectExtrudedStaticCell(conn+connI[i]+1,conn+connI[i+1]);
+ cells->pushBackSilent(i);
+ }
+ }
+ }
+ return cells.retn();
+}
+
+/*!
+ * This method is a faster method to correct orientation of all 3D cells in \a this.
+ * This method works only if \a this is a 3D mesh, that is to say a mesh with mesh dimension 3 and a space dimension 3.
+ * This method makes the hypothesis that \a this a coherent that is to say MEDCouplingUMesh::checkCoherency2 should throw no exception.
+ *
+ * \ret a newly allocated int array with one components containing cell ids renumbered to fit the convention of MED (MED file and MEDCoupling)
+ * \sa MEDCouplingUMesh::orientCorrectlyPolyhedrons,
+ */
+DataArrayInt *MEDCouplingUMesh::findAndCorrectBadOriented3DCells()
+{
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("Invalid mesh to apply findAndCorrectBadOriented3DCells on it : must be meshDim==3 and spaceDim==3 !");
+ int nbOfCells=getNumberOfCells();
+ int *conn=_nodal_connec->getPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coordsPtr=_coords->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(0,1);
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
+ switch(type)
+ {
+ case INTERP_KERNEL::NORM_TETRA4:
+ {
+ if(!IsTetra4WellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
+ {
+ std::swap(*(conn+connI[i]+2),*(conn+connI[i]+3));
+ ret->pushBackSilent(i);
+ }
+ break;
+ }
+ case INTERP_KERNEL::NORM_PYRA5:
+ {
+ if(!IsPyra5WellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
+ {
+ std::swap(*(conn+connI[i]+2),*(conn+connI[i]+4));
+ ret->pushBackSilent(i);
+ }
+ break;
+ }
+ case INTERP_KERNEL::NORM_PENTA6:
+ case INTERP_KERNEL::NORM_HEXA8:
+ case INTERP_KERNEL::NORM_HEXGP12:
+ {
+ if(!Is3DExtrudedStaticCellWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
+ {
+ CorrectExtrudedStaticCell(conn+connI[i]+1,conn+connI[i+1]);
+ ret->pushBackSilent(i);
+ }
+ break;
+ }
+ case INTERP_KERNEL::NORM_POLYHED:
+ {
+ if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
+ {
+ TryToCorrectPolyhedronOrientation(conn+connI[i]+1,conn+connI[i+1],coordsPtr);
+ ret->pushBackSilent(i);
+ }
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::orientCorrectly3DCells : Your mesh contains type of cell not supported yet ! send mail to anthony.geay@cea.fr to add it !");
+ }
+ }
+ updateTime();
+ return ret.retn();
+}
+
+/*!
+ * This method has a sense for meshes with spaceDim==3 and meshDim==2.
+ * If it is not the case an exception will be thrown.
+ * This method is fast because the first cell of \a this is used to compute the plane.
+ * \param vec output of size at least 3 used to store the normal vector (with norm equal to Area ) of searched plane.
+ * \param pos output of size at least 3 used to store a point owned of searched plane.
+ */
+void MEDCouplingUMesh::getFastAveragePlaneOfThis(double *vec, double *pos) const
+{
+ if(getMeshDimension()!=2 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("Invalid mesh to apply getFastAveragePlaneOfThis on it : must be meshDim==2 and spaceDim==3 !");
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coordsPtr=_coords->getConstPointer();
+ INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(conn+1,connI[1]-connI[0]-1,coordsPtr,vec);
+ std::copy(coordsPtr+3*conn[1],coordsPtr+3*conn[1]+3,pos);
+}
+
+/*!
+ * Creates a new MEDCouplingFieldDouble holding Edge Ratio values of all
+ * cells. Currently cells of the following types are treated:
+ * INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4 and INTERP_KERNEL::NORM_TETRA4.
+ * For a cell of other type an exception is thrown.
+ * Space dimension of a 2D mesh can be either 2 or 3.
+ * The Edge Ratio of a cell \f$t\f$ is:
+ * \f$\frac{|t|_\infty}{|t|_0}\f$,
+ * where \f$|t|_\infty\f$ and \f$|t|_0\f$ respectively denote the greatest and
+ * the smallest edge lengths of \f$t\f$.
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
+ * cells and one time, lying on \a this mesh. The caller is to delete this
+ * field using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
+ * \throw If the connectivity data array has more than one component.
+ * \throw If the connectivity data array has a named component.
+ * \throw If the connectivity index data array has more than one component.
+ * \throw If the connectivity index data array has a named component.
+ * \throw If \a this->getMeshDimension() is neither 2 nor 3.
+ * \throw If \a this->getSpaceDimension() is neither 2 nor 3.
+ * \throw If \a this mesh includes cells of type different from the ones enumerated above.
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::getEdgeRatioField() const
+{
+ checkCoherency();
+ int spaceDim=getSpaceDimension();
+ int meshDim=getMeshDimension();
+ if(spaceDim!=2 && spaceDim!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : SpaceDimension must be equal to 2 or 3 !");
+ if(meshDim!=2 && meshDim!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : MeshDimension must be equal to 2 or 3 !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
+ ret->setMesh(this);
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> arr=DataArrayDouble::New();
+ arr->alloc(nbOfCells,1);
+ double *pt=arr->getPointer();
+ ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coo=_coords->getConstPointer();
+ double tmp[12];
+ for(int i=0;i<nbOfCells;i++,pt++)
+ {
+ INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
+ switch(t)
+ {
+ case INTERP_KERNEL::NORM_TRI3:
+ {
+ FillInCompact3DMode(spaceDim,3,conn+1,coo,tmp);
+ *pt=INTERP_KERNEL::triEdgeRatio(tmp);
+ break;
+ }
+ case INTERP_KERNEL::NORM_QUAD4:
+ {
+ FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
+ *pt=INTERP_KERNEL::quadEdgeRatio(tmp);
+ break;
+ }
+ case INTERP_KERNEL::NORM_TETRA4:
+ {
+ FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
+ *pt=INTERP_KERNEL::tetraEdgeRatio(tmp);
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : A cell with not manged type (NORM_TRI3, NORM_QUAD4 and NORM_TETRA4) has been detected !");
+ }
+ conn+=connI[i+1]-connI[i];
+ }
+ ret->setName("EdgeRatio");
+ ret->synchronizeTimeWithSupport();
+ return ret.retn();
+}
+
+/*!
+ * Creates a new MEDCouplingFieldDouble holding Aspect Ratio values of all
+ * cells. Currently cells of the following types are treated:
+ * INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4 and INTERP_KERNEL::NORM_TETRA4.
+ * For a cell of other type an exception is thrown.
+ * Space dimension of a 2D mesh can be either 2 or 3.
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
+ * cells and one time, lying on \a this mesh. The caller is to delete this
+ * field using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
+ * \throw If the connectivity data array has more than one component.
+ * \throw If the connectivity data array has a named component.
+ * \throw If the connectivity index data array has more than one component.
+ * \throw If the connectivity index data array has a named component.
+ * \throw If \a this->getMeshDimension() is neither 2 nor 3.
+ * \throw If \a this->getSpaceDimension() is neither 2 nor 3.
+ * \throw If \a this mesh includes cells of type different from the ones enumerated above.
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::getAspectRatioField() const
+{
+ checkCoherency();
+ int spaceDim=getSpaceDimension();
+ int meshDim=getMeshDimension();
+ if(spaceDim!=2 && spaceDim!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : SpaceDimension must be equal to 2 or 3 !");
+ if(meshDim!=2 && meshDim!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : MeshDimension must be equal to 2 or 3 !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
+ ret->setMesh(this);
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> arr=DataArrayDouble::New();
+ arr->alloc(nbOfCells,1);
+ double *pt=arr->getPointer();
+ ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coo=_coords->getConstPointer();
+ double tmp[12];
+ for(int i=0;i<nbOfCells;i++,pt++)
+ {
+ INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
+ switch(t)
+ {
+ case INTERP_KERNEL::NORM_TRI3:
+ {
+ FillInCompact3DMode(spaceDim,3,conn+1,coo,tmp);
+ *pt=INTERP_KERNEL::triAspectRatio(tmp);
+ break;
+ }
+ case INTERP_KERNEL::NORM_QUAD4:
+ {
+ FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
+ *pt=INTERP_KERNEL::quadAspectRatio(tmp);
+ break;
+ }
+ case INTERP_KERNEL::NORM_TETRA4:
+ {
+ FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
+ *pt=INTERP_KERNEL::tetraAspectRatio(tmp);
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : A cell with not manged type (NORM_TRI3, NORM_QUAD4 and NORM_TETRA4) has been detected !");
+ }
+ conn+=connI[i+1]-connI[i];
+ }
+ ret->setName("AspectRatio");
+ ret->synchronizeTimeWithSupport();
+ return ret.retn();
+}
+
+/*!
+ * Creates a new MEDCouplingFieldDouble holding Warping factor values of all
+ * cells of \a this 2D mesh in 3D space. Currently cells of the following types are
+ * treated: INTERP_KERNEL::NORM_QUAD4.
+ * For a cell of other type an exception is thrown.
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
+ * cells and one time, lying on \a this mesh. The caller is to delete this
+ * field using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
+ * \throw If the connectivity data array has more than one component.
+ * \throw If the connectivity data array has a named component.
+ * \throw If the connectivity index data array has more than one component.
+ * \throw If the connectivity index data array has a named component.
+ * \throw If \a this->getMeshDimension() != 2.
+ * \throw If \a this->getSpaceDimension() != 3.
+ * \throw If \a this mesh includes cells of type different from the ones enumerated above.
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::getWarpField() const
+{
+ checkCoherency();
+ int spaceDim=getSpaceDimension();
+ int meshDim=getMeshDimension();
+ if(spaceDim!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : SpaceDimension must be equal to 3 !");
+ if(meshDim!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : MeshDimension must be equal to 2 !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
+ ret->setMesh(this);
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> arr=DataArrayDouble::New();
+ arr->alloc(nbOfCells,1);
+ double *pt=arr->getPointer();
+ ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coo=_coords->getConstPointer();
+ double tmp[12];
+ for(int i=0;i<nbOfCells;i++,pt++)
+ {
+ INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
+ switch(t)
+ {
+ case INTERP_KERNEL::NORM_QUAD4:
+ {
+ FillInCompact3DMode(3,4,conn+1,coo,tmp);
+ *pt=INTERP_KERNEL::quadWarp(tmp);
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : A cell with not manged type (NORM_QUAD4) has been detected !");
+ }
+ conn+=connI[i+1]-connI[i];
+ }
+ ret->setName("Warp");
+ ret->synchronizeTimeWithSupport();
+ return ret.retn();
+}
+
+
+/*!
+ * Creates a new MEDCouplingFieldDouble holding Skew factor values of all
+ * cells of \a this 2D mesh in 3D space. Currently cells of the following types are
+ * treated: INTERP_KERNEL::NORM_QUAD4.
+ * For a cell of other type an exception is thrown.
+ * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
+ * cells and one time, lying on \a this mesh. The caller is to delete this
+ * field using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
+ * \throw If the connectivity data array has more than one component.
+ * \throw If the connectivity data array has a named component.
+ * \throw If the connectivity index data array has more than one component.
+ * \throw If the connectivity index data array has a named component.
+ * \throw If \a this->getMeshDimension() != 2.
+ * \throw If \a this->getSpaceDimension() != 3.
+ * \throw If \a this mesh includes cells of type different from the ones enumerated above.
+ */
+MEDCouplingFieldDouble *MEDCouplingUMesh::getSkewField() const
+{
+ checkCoherency();
+ int spaceDim=getSpaceDimension();
+ int meshDim=getMeshDimension();
+ if(spaceDim!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : SpaceDimension must be equal to 3 !");
+ if(meshDim!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : MeshDimension must be equal to 2 !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
+ ret->setMesh(this);
+ int nbOfCells=getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> arr=DataArrayDouble::New();
+ arr->alloc(nbOfCells,1);
+ double *pt=arr->getPointer();
+ ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const double *coo=_coords->getConstPointer();
+ double tmp[12];
+ for(int i=0;i<nbOfCells;i++,pt++)
+ {
+ INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
+ switch(t)
+ {
+ case INTERP_KERNEL::NORM_QUAD4:
+ {
+ FillInCompact3DMode(3,4,conn+1,coo,tmp);
+ *pt=INTERP_KERNEL::quadSkew(tmp);
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : A cell with not manged type (NORM_QUAD4) has been detected !");
+ }
+ conn+=connI[i+1]-connI[i];
+ }
+ ret->setName("Skew");
+ ret->synchronizeTimeWithSupport();
+ return ret.retn();
+}
+
+/*!
+ * This method aggregate the bbox of each cell and put it into bbox parameter.
+ *
+ * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
+ * For all other cases this input parameter is ignored.
+ * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
+ *
+ * \throw If \a this is not fully set (coordinates and connectivity).
+ * \throw If a cell in \a this has no valid nodeId.
+ * \sa MEDCouplingUMesh::getBoundingBoxForBBTreeFast, MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic
+ */
+DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree(double arcDetEps) const
+{
+ int mDim(getMeshDimension()),sDim(getSpaceDimension());
+ if((mDim==3 && sDim==3) || (mDim==2 && sDim==3) || (mDim==1 && sDim==1) || ( mDim==1 && sDim==3)) // Compute refined boundary box for quadratic elements only in 2D.
+ return getBoundingBoxForBBTreeFast();
+ if((mDim==2 && sDim==2) || (mDim==1 && sDim==2))
+ {
+ bool presenceOfQuadratic(false);
+ for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator it=_types.begin();it!=_types.end();it++)
+ {
+ const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(*it));
+ if(cm.isQuadratic())
+ presenceOfQuadratic=true;
+ }
+ if(!presenceOfQuadratic)
+ return getBoundingBoxForBBTreeFast();
+ if(mDim==2 && sDim==2)
+ return getBoundingBoxForBBTree2DQuadratic(arcDetEps);
+ else
+ return getBoundingBoxForBBTree1DQuadratic(arcDetEps);
+ }
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree : Managed dimensions are (mDim=1,sDim=1), (mDim=1,sDim=2), (mDim=1,sDim=3), (mDim=2,sDim=2), (mDim=2,sDim=3) and (mDim=3,sDim=3) !");
+}
+
+/*!
+ * This method aggregate the bbox of each cell only considering the nodes constituting each cell and put it into bbox parameter.
+ * So meshes having quadratic cells the computed bounding boxes can be invalid !
+ *
+ * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
+ *
+ * \throw If \a this is not fully set (coordinates and connectivity).
+ * \throw If a cell in \a this has no valid nodeId.
+ */
+DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTreeFast() const
+{
+ checkFullyDefined();
+ int spaceDim(getSpaceDimension()),nbOfCells(getNumberOfCells()),nbOfNodes(getNumberOfNodes());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
+ double *bbox(ret->getPointer());
+ for(int i=0;i<nbOfCells*spaceDim;i++)
+ {
+ bbox[2*i]=std::numeric_limits<double>::max();
+ bbox[2*i+1]=-std::numeric_limits<double>::max();
+ }
+ const double *coordsPtr(_coords->getConstPointer());
+ const int *conn(_nodal_connec->getConstPointer()),*connI(_nodal_connec_index->getConstPointer());
+ for(int i=0;i<nbOfCells;i++)
+ {
+ int offset=connI[i]+1;
+ int nbOfNodesForCell(connI[i+1]-offset),kk(0);
+ for(int j=0;j<nbOfNodesForCell;j++)
+ {
+ int nodeId=conn[offset+j];
+ if(nodeId>=0 && nodeId<nbOfNodes)
+ {
+ for(int k=0;k<spaceDim;k++)
+ {
+ bbox[2*spaceDim*i+2*k]=std::min(bbox[2*spaceDim*i+2*k],coordsPtr[spaceDim*nodeId+k]);
+ bbox[2*spaceDim*i+2*k+1]=std::max(bbox[2*spaceDim*i+2*k+1],coordsPtr[spaceDim*nodeId+k]);
+ }
+ kk++;
+ }
+ }
+ if(kk==0)
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::getBoundingBoxForBBTree : cell #" << i << " contains no valid nodeId !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method aggregates the bbox of each 2D cell in \a this considering the whole shape. This method is particularly
+ * useful for 2D meshes having quadratic cells
+ * because for this type of cells getBoundingBoxForBBTreeFast method may return invalid bounding boxes (since it just considers
+ * the two extremities of the arc of circle).
+ *
+ * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
+ * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
+ * \throw If \a this is not fully defined.
+ * \throw If \a this is not a mesh with meshDimension equal to 2.
+ * \throw If \a this is not a mesh with spaceDimension equal to 2.
+ * \sa MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic
+ */
+DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic(double arcDetEps) const
+{
+ checkFullyDefined();
+ int spaceDim(getSpaceDimension()),mDim(getMeshDimension()),nbOfCells(getNumberOfCells());
+ if(spaceDim!=2 || mDim!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic : This method should be applied on mesh with mesh dimension equal to 2 and space dimension also equal to 2!");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
+ double *bbox(ret->getPointer());
+ const double *coords(_coords->getConstPointer());
+ const int *conn(_nodal_connec->getConstPointer()),*connI(_nodal_connec_index->getConstPointer());
+ for(int i=0;i<nbOfCells;i++,bbox+=4,connI++)
+ {
+ const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]));
+ int sz(connI[1]-connI[0]-1);
+ INTERP_KERNEL::QUADRATIC_PLANAR::_arc_detection_precision=arcDetEps;
+ std::vector<INTERP_KERNEL::Node *> nodes(sz);
+ INTERP_KERNEL::QuadraticPolygon *pol(0);
+ for(int j=0;j<sz;j++)
+ {
+ int nodeId(conn[*connI+1+j]);
+ nodes[j]=new INTERP_KERNEL::Node(coords[nodeId*2],coords[nodeId*2+1]);
+ }
+ if(!cm.isQuadratic())
+ pol=INTERP_KERNEL::QuadraticPolygon::BuildLinearPolygon(nodes);
+ else
+ pol=INTERP_KERNEL::QuadraticPolygon::BuildArcCirclePolygon(nodes);
+ INTERP_KERNEL::Bounds b; pol->fillBounds(b); delete pol;
+ bbox[0]=b.getXMin(); bbox[1]=b.getXMax(); bbox[2]=b.getYMin(); bbox[3]=b.getYMax();
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method aggregates the bbox of each 1D cell in \a this considering the whole shape. This method is particularly
+ * useful for 2D meshes having quadratic cells
+ * because for this type of cells getBoundingBoxForBBTreeFast method may return invalid bounding boxes (since it just considers
+ * the two extremities of the arc of circle).
+ *
+ * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
+ * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
+ * \throw If \a this is not fully defined.
+ * \throw If \a this is not a mesh with meshDimension equal to 1.
+ * \throw If \a this is not a mesh with spaceDimension equal to 2.
+ * \sa MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic
+ */
+DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic(double arcDetEps) const
+{
+ checkFullyDefined();
+ int spaceDim(getSpaceDimension()),mDim(getMeshDimension()),nbOfCells(getNumberOfCells());
+ if(spaceDim!=2 || mDim!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic : This method should be applied on mesh with mesh dimension equal to 1 and space dimension also equal to 2!");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
+ double *bbox(ret->getPointer());
+ const double *coords(_coords->getConstPointer());
+ const int *conn(_nodal_connec->getConstPointer()),*connI(_nodal_connec_index->getConstPointer());
+ for(int i=0;i<nbOfCells;i++,bbox+=4,connI++)
+ {
+ const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]));
+ int sz(connI[1]-connI[0]-1);
+ INTERP_KERNEL::QUADRATIC_PLANAR::_arc_detection_precision=arcDetEps;
+ std::vector<INTERP_KERNEL::Node *> nodes(sz);
+ INTERP_KERNEL::Edge *edge(0);
+ for(int j=0;j<sz;j++)
+ {
+ int nodeId(conn[*connI+1+j]);
+ nodes[j]=new INTERP_KERNEL::Node(coords[nodeId*2],coords[nodeId*2+1]);
+ }
+ if(!cm.isQuadratic())
+ edge=INTERP_KERNEL::QuadraticPolygon::BuildLinearEdge(nodes);
+ else
+ edge=INTERP_KERNEL::QuadraticPolygon::BuildArcCircleEdge(nodes);
+ const INTERP_KERNEL::Bounds& b(edge->getBounds());
+ bbox[0]=b.getXMin(); bbox[1]=b.getXMax(); bbox[2]=b.getYMin(); bbox[3]=b.getYMax(); edge->decrRef();
+ }
+ return ret.retn();
+}
+
+/// @cond INTERNAL
+
+namespace ParaMEDMEMImpl
+{
+ class ConnReader
+ {
+ public:
+ ConnReader(const int *c, int val):_conn(c),_val(val) { }
+ bool operator() (const int& pos) { return _conn[pos]!=_val; }
+ private:
+ const int *_conn;
+ int _val;
+ };
+
+ class ConnReader2
+ {
+ public:
+ ConnReader2(const int *c, int val):_conn(c),_val(val) { }
+ bool operator() (const int& pos) { return _conn[pos]==_val; }
+ private:
+ const int *_conn;
+ int _val;
+ };
+}
+
+/// @endcond
+
+/*!
+ * This method expects that \a this is sorted by types. If not an exception will be thrown.
+ * This method returns in the same format as code (see MEDCouplingUMesh::checkTypeConsistencyAndContig or MEDCouplingUMesh::splitProfilePerType) how
+ * \a this is composed in cell types.
+ * The returned array is of size 3*n where n is the number of different types present in \a this.
+ * For every k in [0,n] ret[3*k+2]==-1 because it has no sense here.
+ * This parameter is kept only for compatibility with other methode listed above.
+ */
+std::vector<int> MEDCouplingUMesh::getDistributionOfTypes() const
+{
+ checkConnectivityFullyDefined();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const int *work=connI;
+ int nbOfCells=getNumberOfCells();
+ std::size_t n=getAllGeoTypes().size();
+ std::vector<int> ret(3*n,-1); //ret[3*k+2]==-1 because it has no sense here
+ std::set<INTERP_KERNEL::NormalizedCellType> types;
+ for(std::size_t i=0;work!=connI+nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)conn[*work];
+ if(types.find(typ)!=types.end())
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::getDistributionOfTypes : Type " << INTERP_KERNEL::CellModel::GetCellModel(typ).getRepr();
+ oss << " is not contiguous !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ types.insert(typ);
+ ret[3*i]=typ;
+ const int *work2=std::find_if(work+1,connI+nbOfCells,ParaMEDMEMImpl::ConnReader(conn,typ));
+ ret[3*i+1]=(int)std::distance(work,work2);
+ work=work2;
+ }
+ return ret;
+}
+
+/*!
+ * This method is used to check that this has contiguous cell type in same order than described in \a code.
+ * only for types cell, type node is not managed.
+ * Format of \a code is the following. \a code should be of size 3*n and non empty. If not an exception is thrown.
+ * foreach k in [0,n) on 3*k pos represent the geometric type and 3*k+1 number of elements of type 3*k.
+ * 3*k+2 refers if different from -1 the pos in 'idsPerType' to get the corresponding array.
+ * If 2 or more same geometric type is in \a code and exception is thrown too.
+ *
+ * This method firstly checks
+ * If it exists k so that 3*k geometric type is not in geometric types of this an exception will be thrown.
+ * If it exists k so that 3*k geometric type exists but the number of consecutive cell types does not match,
+ * an exception is thrown too.
+ *
+ * If all geometric types in \a code are exactly those in \a this null pointer is returned.
+ * If it exists a geometric type in \a this \b not in \a code \b no exception is thrown
+ * and a DataArrayInt instance is returned that the user has the responsability to deallocate.
+ */
+DataArrayInt *MEDCouplingUMesh::checkTypeConsistencyAndContig(const std::vector<int>& code, const std::vector<const DataArrayInt *>& idsPerType) const
+{
+ if(code.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code is empty, should not !");
+ std::size_t sz=code.size();
+ std::size_t n=sz/3;
+ if(sz%3!=0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code size is NOT %3 !");
+ std::vector<INTERP_KERNEL::NormalizedCellType> types;
+ int nb=0;
+ bool isNoPflUsed=true;
+ for(std::size_t i=0;i<n;i++)
+ if(std::find(types.begin(),types.end(),(INTERP_KERNEL::NormalizedCellType)code[3*i])==types.end())
+ {
+ types.push_back((INTERP_KERNEL::NormalizedCellType)code[3*i]);
+ nb+=code[3*i+1];
+ if(_types.find((INTERP_KERNEL::NormalizedCellType)code[3*i])==_types.end())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : expected geo types not in this !");
+ isNoPflUsed=isNoPflUsed && (code[3*i+2]==-1);
+ }
+ if(types.size()!=n)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code contains duplication of types in unstructured mesh !");
+ if(isNoPflUsed)
+ {
+ if(!checkConsecutiveCellTypesAndOrder(&types[0],&types[0]+types.size()))
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : non contiguous type !");
+ if(types.size()==_types.size())
+ return 0;
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ ret->alloc(nb,1);
+ int *retPtr=ret->getPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ const int *conn=_nodal_connec->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ const int *i=connI;
+ int kk=0;
+ for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator it=types.begin();it!=types.end();it++,kk++)
+ {
+ i=std::find_if(i,connI+nbOfCells,ParaMEDMEMImpl::ConnReader2(conn,(int)(*it)));
+ int offset=(int)std::distance(connI,i);
+ const int *j=std::find_if(i+1,connI+nbOfCells,ParaMEDMEMImpl::ConnReader(conn,(int)(*it)));
+ int nbOfCellsOfCurType=(int)std::distance(i,j);
+ if(code[3*kk+2]==-1)
+ for(int k=0;k<nbOfCellsOfCurType;k++)
+ *retPtr++=k+offset;
+ else
+ {
+ int idInIdsPerType=code[3*kk+2];
+ if(idInIdsPerType>=0 && idInIdsPerType<(int)idsPerType.size())
+ {
+ const DataArrayInt *zePfl=idsPerType[idInIdsPerType];
+ if(zePfl)
+ {
+ zePfl->checkAllocated();
+ if(zePfl->getNumberOfComponents()==1)
+ {
+ for(const int *k=zePfl->begin();k!=zePfl->end();k++,retPtr++)
+ {
+ if(*k>=0 && *k<nbOfCellsOfCurType)
+ *retPtr=(*k)+offset;
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::checkTypeConsistencyAndContig : the section " << kk << " points to the profile #" << idInIdsPerType;
+ oss << ", and this profile contains a value " << *k << " should be in [0," << nbOfCellsOfCurType << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : presence of a profile with nb of compo != 1 !");
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : presence of null profile !");
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::checkTypeConsistencyAndContig : at section " << kk << " of code it points to the array #" << idInIdsPerType;
+ oss << " should be in [0," << idsPerType.size() << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ i=j;
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method makes the hypothesis that \at this is sorted by type. If not an exception will be thrown.
+ * This method is the opposite of MEDCouplingUMesh::checkTypeConsistencyAndContig method. Given a list of cells in \a profile it returns a list of sub-profiles sorted by geo type.
+ * The result is put in the array \a idsPerType. In the returned parameter \a code, foreach i \a code[3*i+2] refers (if different from -1) to a location into the \a idsPerType.
+ * This method has 1 input \a profile and 3 outputs \a code \a idsInPflPerType and \a idsPerType.
+ *
+ * \param [out] code is a vector of size 3*n where n is the number of different geometric type in \a this \b reduced to the profile \a profile. \a code has exactly the same semantic than in MEDCouplingUMesh::checkTypeConsistencyAndContig method.
+ * \param [out] idsInPflPerType is a vector of size of different geometric type in the subpart defined by \a profile of \a this ( equal to \a code.size()/3). For each i,
+ * \a idsInPflPerType[i] stores the tuple ids in \a profile that correspond to the geometric type code[3*i+0]
+ * \param [out] idsPerType is a vector of size of different sub profiles needed to be defined to represent the profile \a profile for a given geometric type.
+ * This vector can be empty in case of all geometric type cells are fully covered in ascending in the given input \a profile.
+ * \throw if \a profile has not exactly one component. It throws too, if \a profile contains some values not in [0,getNumberOfCells()) or if \a this is not fully defined
+ */
+void MEDCouplingUMesh::splitProfilePerType(const DataArrayInt *profile, std::vector<int>& code, std::vector<DataArrayInt *>& idsInPflPerType, std::vector<DataArrayInt *>& idsPerType) const
+{
+ if(!profile)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : input profile is NULL !");
+ if(profile->getNumberOfComponents()!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : input profile should have exactly one component !");
+ checkConnectivityFullyDefined();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ std::vector<INTERP_KERNEL::NormalizedCellType> types;
+ std::vector<int> typeRangeVals(1);
+ for(const int *i=connI;i!=connI+nbOfCells;)
+ {
+ INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
+ if(std::find(types.begin(),types.end(),curType)!=types.end())
+ {
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : current mesh is not sorted by type !");
+ }
+ types.push_back(curType);
+ i=std::find_if(i+1,connI+nbOfCells,ParaMEDMEMImpl::ConnReader(conn,(int)curType));
+ typeRangeVals.push_back((int)std::distance(connI,i));
+ }
+ //
+ DataArrayInt *castArr=0,*rankInsideCast=0,*castsPresent=0;
+ profile->splitByValueRange(&typeRangeVals[0],&typeRangeVals[0]+typeRangeVals.size(),castArr,rankInsideCast,castsPresent);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp0=castArr;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp1=rankInsideCast;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp2=castsPresent;
+ //
+ int nbOfCastsFinal=castsPresent->getNumberOfTuples();
+ code.resize(3*nbOfCastsFinal);
+ std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > idsInPflPerType2;
+ std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > idsPerType2;
+ for(int i=0;i<nbOfCastsFinal;i++)
+ {
+ int castId=castsPresent->getIJ(i,0);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp3=castArr->getIdsEqual(castId);
+ idsInPflPerType2.push_back(tmp3);
+ code[3*i]=(int)types[castId];
+ code[3*i+1]=tmp3->getNumberOfTuples();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp4=rankInsideCast->selectByTupleId(tmp3->getConstPointer(),tmp3->getConstPointer()+tmp3->getNumberOfTuples());
+ if(tmp4->getNumberOfTuples()!=typeRangeVals[castId+1]-typeRangeVals[castId] || !tmp4->isIdentity())
+ {
+ tmp4->copyStringInfoFrom(*profile);
+ idsPerType2.push_back(tmp4);
+ code[3*i+2]=(int)idsPerType2.size()-1;
+ }
+ else
+ {
+ code[3*i+2]=-1;
+ }
+ }
+ std::size_t sz2=idsInPflPerType2.size();
+ idsInPflPerType.resize(sz2);
+ for(std::size_t i=0;i<sz2;i++)
+ {
+ DataArrayInt *locDa=idsInPflPerType2[i];
+ locDa->incrRef();
+ idsInPflPerType[i]=locDa;
+ }
+ std::size_t sz=idsPerType2.size();
+ idsPerType.resize(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ DataArrayInt *locDa=idsPerType2[i];
+ locDa->incrRef();
+ idsPerType[i]=locDa;
+ }
+}
+
+/*!
+ * This method is here too emulate the MEDMEM behaviour on BDC (buildDescendingConnectivity). Hoping this method becomes deprecated very soon.
+ * This method make the assumption that \a this and 'nM1LevMesh' mesh lyies on same coords (same pointer) as MED and MEDMEM does.
+ * The following equality should be verified 'nM1LevMesh->getMeshDimension()==this->getMeshDimension()-1'
+ * This method returns 5+2 elements. 'desc', 'descIndx', 'revDesc', 'revDescIndx' and 'meshnM1' behaves exactly as ParaMEDMEM::MEDCouplingUMesh::buildDescendingConnectivity except the content as described after. The returned array specifies the n-1 mesh reordered by type as MEDMEM does. 'nM1LevMeshIds' contains the ids in returned 'meshnM1'. Finally 'meshnM1Old2New' contains numbering old2new that is to say the cell #k in coarse 'nM1LevMesh' will have the number ret[k] in returned mesh 'nM1LevMesh' MEDMEM reordered.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::emulateMEDMEMBDC(const MEDCouplingUMesh *nM1LevMesh, DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *&revDesc, DataArrayInt *&revDescIndx, DataArrayInt *& nM1LevMeshIds, DataArrayInt *&meshnM1Old2New) const
+{
+ checkFullyDefined();
+ nM1LevMesh->checkFullyDefined();
+ if(getMeshDimension()-1!=nM1LevMesh->getMeshDimension())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::emulateMEDMEMBDC : The mesh passed as first argument should have a meshDim equal to this->getMeshDimension()-1 !" );
+ if(_coords!=nM1LevMesh->getCoords())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::emulateMEDMEMBDC : 'this' and mesh in first argument should share the same coords : Use tryToShareSameCoords method !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp0=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp1=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret1=buildDescendingConnectivity(desc,descIndx,tmp0,tmp1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret0=ret1->sortCellsInMEDFileFrmt();
+ desc->transformWithIndArr(ret0->getConstPointer(),ret0->getConstPointer()+ret0->getNbOfElems());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp=MEDCouplingUMesh::New();
+ tmp->setConnectivity(tmp0,tmp1);
+ tmp->renumberCells(ret0->getConstPointer(),false);
+ revDesc=tmp->getNodalConnectivity();
+ revDescIndx=tmp->getNodalConnectivityIndex();
+ DataArrayInt *ret=0;
+ if(!ret1->areCellsIncludedIn(nM1LevMesh,2,ret))
+ {
+ int tmp2;
+ ret->getMaxValue(tmp2);
+ ret->decrRef();
+ std::ostringstream oss; oss << "MEDCouplingUMesh::emulateMEDMEMBDC : input N-1 mesh present a cell not in descending mesh ... Id of cell is " << tmp2 << " !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ nM1LevMeshIds=ret;
+ //
+ revDesc->incrRef();
+ revDescIndx->incrRef();
+ ret1->incrRef();
+ ret0->incrRef();
+ meshnM1Old2New=ret0;
+ return ret1;
+}
+
+/*!
+ * Permutes the nodal connectivity arrays so that the cells are sorted by type, which is
+ * necessary for writing the mesh to MED file. Additionally returns a permutation array
+ * in "Old to New" mode.
+ * \return DataArrayInt * - a new instance of DataArrayInt. The caller is to delete
+ * this array using decrRef() as it is no more needed.
+ * \throw If the nodal connectivity of cells is not defined.
+ */
+DataArrayInt *MEDCouplingUMesh::sortCellsInMEDFileFrmt()
+{
+ checkConnectivityFullyDefined();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=getRenumArrForMEDFileFrmt();
+ renumberCells(ret->getConstPointer(),false);
+ return ret.retn();
+}
+
+/*!
+ * This methods checks that cells are sorted by their types.
+ * This method makes asumption (no check) that connectivity is correctly set before calling.
+ */
+bool MEDCouplingUMesh::checkConsecutiveCellTypes() const
+{
+ checkFullyDefined();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ std::set<INTERP_KERNEL::NormalizedCellType> types;
+ for(const int *i=connI;i!=connI+nbOfCells;)
+ {
+ INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
+ if(types.find(curType)!=types.end())
+ return false;
+ types.insert(curType);
+ i=std::find_if(i+1,connI+nbOfCells,ParaMEDMEMImpl::ConnReader(conn,(int)curType));
+ }
+ return true;
+}
+
+/*!
+ * This method is a specialization of MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder method that is called here.
+ * The geometric type order is specified by MED file.
+ *
+ * \sa MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder
+ */
+bool MEDCouplingUMesh::checkConsecutiveCellTypesForMEDFileFrmt() const
+{
+ return checkConsecutiveCellTypesAndOrder(MEDMEM_ORDER,MEDMEM_ORDER+N_MEDMEM_ORDER);
+}
+
+/*!
+ * This method performs the same job as checkConsecutiveCellTypes except that the order of types sequence is analyzed to check
+ * that the order is specified in array defined by [ \a orderBg , \a orderEnd ).
+ * If there is some geo types in \a this \b NOT in [ \a orderBg, \a orderEnd ) it is OK (return true) if contiguous.
+ * If there is some geo types in [ \a orderBg, \a orderEnd ) \b NOT in \a this it is OK too (return true) if contiguous.
+ */
+bool MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const
+{
+ checkFullyDefined();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ if(nbOfCells==0)
+ return true;
+ int lastPos=-1;
+ std::set<INTERP_KERNEL::NormalizedCellType> sg;
+ for(const int *i=connI;i!=connI+nbOfCells;)
+ {
+ INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
+ const INTERP_KERNEL::NormalizedCellType *isTypeExists=std::find(orderBg,orderEnd,curType);
+ if(isTypeExists!=orderEnd)
+ {
+ int pos=(int)std::distance(orderBg,isTypeExists);
+ if(pos<=lastPos)
+ return false;
+ lastPos=pos;
+ i=std::find_if(i+1,connI+nbOfCells,ParaMEDMEMImpl::ConnReader(conn,(int)curType));
+ }
+ else
+ {
+ if(sg.find(curType)==sg.end())
+ {
+ i=std::find_if(i+1,connI+nbOfCells,ParaMEDMEMImpl::ConnReader(conn,(int)curType));
+ sg.insert(curType);
+ }
+ else
+ return false;
+ }
+ }
+ return true;
+}
+
+/*!
+ * This method returns 2 newly allocated DataArrayInt instances. The first is an array of size 'this->getNumberOfCells()' with one component,
+ * that tells for each cell the pos of its type in the array on type given in input parameter. The 2nd output parameter is an array with the same
+ * number of tuples than input type array and with one component. This 2nd output array gives type by type the number of occurence of type in 'this'.
+ */
+DataArrayInt *MEDCouplingUMesh::getLevArrPerCellTypes(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd, DataArrayInt *&nbPerType) const
+{
+ checkConnectivityFullyDefined();
+ int nbOfCells=getNumberOfCells();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmpa=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmpb=DataArrayInt::New();
+ tmpa->alloc(nbOfCells,1);
+ tmpb->alloc((int)std::distance(orderBg,orderEnd),1);
+ tmpb->fillWithZero();
+ int *tmp=tmpa->getPointer();
+ int *tmp2=tmpb->getPointer();
+ for(const int *i=connI;i!=connI+nbOfCells;i++)
+ {
+ const INTERP_KERNEL::NormalizedCellType *where=std::find(orderBg,orderEnd,(INTERP_KERNEL::NormalizedCellType)conn[*i]);
+ if(where!=orderEnd)
+ {
+ int pos=(int)std::distance(orderBg,where);
+ tmp2[pos]++;
+ tmp[std::distance(connI,i)]=pos;
+ }
+ else
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*i]);
+ std::ostringstream oss; oss << "MEDCouplingUMesh::getLevArrPerCellTypes : Cell #" << std::distance(connI,i);
+ oss << " has a type " << cm.getRepr() << " not in input array of type !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ nbPerType=tmpb.retn();
+ return tmpa.retn();
+}
+
+/*!
+ * This method behaves exactly as MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec but the order is those defined in MED file spec.
+ *
+ * \return a new object containing the old to new correspondance.
+ *
+ * \sa MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec, MEDCouplingUMesh::sortCellsInMEDFileFrmt.
+ */
+DataArrayInt *MEDCouplingUMesh::getRenumArrForMEDFileFrmt() const
+{
+ return getRenumArrForConsecutiveCellTypesSpec(MEDMEM_ORDER,MEDMEM_ORDER+N_MEDMEM_ORDER);
+}
+
+/*!
+ * This method is similar to method MEDCouplingUMesh::rearrange2ConsecutiveCellTypes except that the type order is specfied by [ \a orderBg , \a orderEnd ) (as MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder method) and that this method is \b const and performs \b NO permutation in \a this.
+ * This method returns an array of size getNumberOfCells() that gives a renumber array old2New that can be used as input of MEDCouplingMesh::renumberCells.
+ * The mesh after this call to MEDCouplingMesh::renumberCells will pass the test of MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder with the same inputs.
+ * The returned array minimizes the permutations that is to say the order of cells inside same geometric type remains the same.
+ */
+DataArrayInt *MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const
+{
+ DataArrayInt *nbPerType=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmpa=getLevArrPerCellTypes(orderBg,orderEnd,nbPerType);
+ nbPerType->decrRef();
+ return tmpa->buildPermArrPerLevel();
+}
+
+/*!
+ * This method reorganize the cells of \a this so that the cells with same geometric types are put together.
+ * The number of cells remains unchanged after the call of this method.
+ * This method tries to minimizes the number of needed permutations. So, this method behaves not exactly as
+ * MEDCouplingUMesh::sortCellsInMEDFileFrmt.
+ *
+ * \return the array giving the correspondance old to new.
+ */
+DataArrayInt *MEDCouplingUMesh::rearrange2ConsecutiveCellTypes()
+{
+ checkFullyDefined();
+ computeTypes();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ std::vector<INTERP_KERNEL::NormalizedCellType> types;
+ for(const int *i=connI;i!=connI+nbOfCells && (types.size()!=_types.size());)
+ if(std::find(types.begin(),types.end(),(INTERP_KERNEL::NormalizedCellType)conn[*i])==types.end())
+ {
+ INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
+ types.push_back(curType);
+ for(i++;i!=connI+nbOfCells && (INTERP_KERNEL::NormalizedCellType)conn[*i]==curType;i++);
+ }
+ DataArrayInt *ret=DataArrayInt::New();
+ ret->alloc(nbOfCells,1);
+ int *retPtr=ret->getPointer();
+ std::fill(retPtr,retPtr+nbOfCells,-1);
+ int newCellId=0;
+ for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=types.begin();iter!=types.end();iter++)
+ {
+ for(const int *i=connI;i!=connI+nbOfCells;i++)
+ if((INTERP_KERNEL::NormalizedCellType)conn[*i]==(*iter))
+ retPtr[std::distance(connI,i)]=newCellId++;
+ }
+ renumberCells(retPtr,false);
+ return ret;
+}
+
+/*!
+ * This method splits \a this into as mush as untructured meshes that consecutive set of same type cells.
+ * So this method has typically a sense if MEDCouplingUMesh::checkConsecutiveCellTypes has a sense.
+ * This method makes asumption that connectivity is correctly set before calling.
+ */
+std::vector<MEDCouplingUMesh *> MEDCouplingUMesh::splitByType() const
+{
+ checkConnectivityFullyDefined();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ std::vector<MEDCouplingUMesh *> ret;
+ for(const int *i=connI;i!=connI+nbOfCells;)
+ {
+ INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
+ int beginCellId=(int)std::distance(connI,i);
+ i=std::find_if(i+1,connI+nbOfCells,ParaMEDMEMImpl::ConnReader(conn,(int)curType));
+ int endCellId=(int)std::distance(connI,i);
+ int sz=endCellId-beginCellId;
+ int *cells=new int[sz];
+ for(int j=0;j<sz;j++)
+ cells[j]=beginCellId+j;
+ MEDCouplingUMesh *m=(MEDCouplingUMesh *)buildPartOfMySelf(cells,cells+sz,true);
+ delete [] cells;
+ ret.push_back(m);
+ }
+ return ret;
+}
+
+/*!
+ * This method performs the opposite operation than those in MEDCoupling1SGTUMesh::buildUnstructured.
+ * If \a this is a single geometric type unstructured mesh, it will be converted into a more compact data structure,
+ * MEDCoupling1GTUMesh instance. The returned instance will aggregate the same DataArrayDouble instance of coordinates than \a this.
+ *
+ * \return a newly allocated instance, that the caller must manage.
+ * \throw If \a this contains more than one geometric type.
+ * \throw If the nodal connectivity of \a this is not fully defined.
+ * \throw If the internal data is not coherent.
+ */
+MEDCoupling1GTUMesh *MEDCouplingUMesh::convertIntoSingleGeoTypeMesh() const
+{
+ checkConnectivityFullyDefined();
+ if(_types.size()!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertIntoSingleGeoTypeMesh : current mesh does not contain exactly one geometric type !");
+ INTERP_KERNEL::NormalizedCellType typ=*_types.begin();
+ MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> ret=MEDCoupling1GTUMesh::New(getName(),typ);
+ ret->setCoords(getCoords());
+ MEDCoupling1SGTUMesh *retC=dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh*)ret);
+ if(retC)
+ {
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c=convertNodalConnectivityToStaticGeoTypeMesh();
+ retC->setNodalConnectivity(c);
+ }
+ else
+ {
+ MEDCoupling1DGTUMesh *retD=dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh*)ret);
+ if(!retD)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertIntoSingleGeoTypeMesh : Internal error !");
+ DataArrayInt *c=0,*ci=0;
+ convertNodalConnectivityToDynamicGeoTypeMesh(c,ci);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cs(c),cis(ci);
+ retD->setNodalConnectivity(cs,cis);
+ }
+ return ret.retn();
+}
+
+DataArrayInt *MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh() const
+{
+ checkConnectivityFullyDefined();
+ if(_types.size()!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : current mesh does not contain exactly one geometric type !");
+ INTERP_KERNEL::NormalizedCellType typ=*_types.begin();
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
+ if(cm.isDynamic())
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : this contains a single geo type (" << cm.getRepr() << ") but ";
+ oss << "this type is dynamic ! Only static geometric type is possible for that type ! call convertNodalConnectivityToDynamicGeoTypeMesh instead !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ int nbCells=getNumberOfCells();
+ int typi=(int)typ;
+ int nbNodesPerCell=(int)cm.getNumberOfNodes();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> connOut=DataArrayInt::New(); connOut->alloc(nbCells*nbNodesPerCell,1);
+ int *outPtr=connOut->getPointer();
+ const int *conn=_nodal_connec->begin();
+ const int *connI=_nodal_connec_index->begin();
+ nbNodesPerCell++;
+ for(int i=0;i<nbCells;i++,connI++)
+ {
+ if(conn[connI[0]]==typi && connI[1]-connI[0]==nbNodesPerCell)
+ outPtr=std::copy(conn+connI[0]+1,conn+connI[1],outPtr);
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : there something wrong in cell #" << i << " ! The type of cell is not those expected, or the length of nodal connectivity is not those expected (" << nbNodesPerCell-1 << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ return connOut.retn();
+}
+
+void MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh(DataArrayInt *&nodalConn, DataArrayInt *&nodalConnIndex) const
+{
+ static const char msg0[]="MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh : nodal connectivity in this are invalid ! Call checkCoherency2 !";
+ checkConnectivityFullyDefined();
+ if(_types.size()!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh : current mesh does not contain exactly one geometric type !");
+ int nbCells=getNumberOfCells(),lgth=_nodal_connec->getNumberOfTuples();
+ if(lgth<nbCells)
+ throw INTERP_KERNEL::Exception(msg0);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c(DataArrayInt::New()),ci(DataArrayInt::New());
+ c->alloc(lgth-nbCells,1); ci->alloc(nbCells+1,1);
+ int *cp(c->getPointer()),*cip(ci->getPointer());
+ const int *incp(_nodal_connec->begin()),*incip(_nodal_connec_index->begin());
+ cip[0]=0;
+ for(int i=0;i<nbCells;i++,cip++,incip++)
+ {
+ int strt(incip[0]+1),stop(incip[1]);//+1 to skip geo type
+ int delta(stop-strt);
+ if(delta>=1)
+ {
+ if((strt>=0 && strt<lgth) && (stop>=0 && stop<=lgth))
+ cp=std::copy(incp+strt,incp+stop,cp);
+ else
+ throw INTERP_KERNEL::Exception(msg0);
+ }
+ else
+ throw INTERP_KERNEL::Exception(msg0);
+ cip[1]=cip[0]+delta;
+ }
+ nodalConn=c.retn(); nodalConnIndex=ci.retn();
+}
+
+/*!
+ * This method takes in input a vector of MEDCouplingUMesh instances lying on the same coordinates with same mesh dimensions.
+ * Each mesh in \b ms must be sorted by type with the same order (typically using MEDCouplingUMesh::sortCellsInMEDFileFrmt).
+ * This method is particulary useful for MED file interaction. It allows to aggregate several meshes and keeping the type sorting
+ * and the track of the permutation by chunk of same geotype cells to retrieve it. The traditional formats old2new and new2old
+ * are not used here to avoid the build of big permutation array.
+ *
+ * \param [in] ms meshes with same mesh dimension lying on the same coords and sorted by type following de the same geometric type order than
+ * those specified in MEDCouplingUMesh::sortCellsInMEDFileFrmt method.
+ * \param [out] szOfCellGrpOfSameType is a newly allocated DataArrayInt instance whose number of tuples is equal to the number of chunks of same geotype
+ * in all meshes in \b ms. The accumulation of all values of this array is equal to the number of cells of returned mesh.
+ * \param [out] idInMsOfCellGrpOfSameType is a newly allocated DataArrayInt instance having the same size than \b szOfCellGrpOfSameType. This
+ * output array gives for each chunck of same type the corresponding mesh id in \b ms.
+ * \return A newly allocated unstructured mesh that is the result of the aggregation on same coords of all meshes in \b ms. This returned mesh
+ * is sorted by type following the geo cell types order of MEDCouplingUMesh::sortCellsInMEDFileFrmt method.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& ms,
+ DataArrayInt *&szOfCellGrpOfSameType,
+ DataArrayInt *&idInMsOfCellGrpOfSameType) throw(INTERP_KERNEL::Exception)
+{
+ std::vector<const MEDCouplingUMesh *> ms2;
+ for(std::vector<const MEDCouplingUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
+ if(*it)
+ {
+ (*it)->checkConnectivityFullyDefined();
+ ms2.push_back(*it);
+ }
+ if(ms2.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : input vector is empty !");
+ const DataArrayDouble *refCoo=ms2[0]->getCoords();
+ int meshDim=ms2[0]->getMeshDimension();
+ std::vector<const MEDCouplingUMesh *> m1ssm;
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > m1ssmAuto;
+ //
+ std::vector<const MEDCouplingUMesh *> m1ssmSingle;
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > m1ssmSingleAuto;
+ int fake=0,rk=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret1(DataArrayInt::New()),ret2(DataArrayInt::New());
+ ret1->alloc(0,1); ret2->alloc(0,1);
+ for(std::vector<const MEDCouplingUMesh *>::const_iterator it=ms2.begin();it!=ms2.end();it++,rk++)
+ {
+ if(meshDim!=(*it)->getMeshDimension())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : meshdims mismatch !");
+ if(refCoo!=(*it)->getCoords())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : meshes are not shared by a single coordinates coords !");
+ std::vector<MEDCouplingUMesh *> sp=(*it)->splitByType();
+ std::copy(sp.begin(),sp.end(),std::back_insert_iterator< std::vector<const MEDCouplingUMesh *> >(m1ssm));
+ std::copy(sp.begin(),sp.end(),std::back_insert_iterator< std::vector<MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > >(m1ssmAuto));
+ for(std::vector<MEDCouplingUMesh *>::const_iterator it2=sp.begin();it2!=sp.end();it2++)
+ {
+ MEDCouplingUMesh *singleCell=static_cast<MEDCouplingUMesh *>((*it2)->buildPartOfMySelf(&fake,&fake+1,true));
+ m1ssmSingleAuto.push_back(singleCell);
+ m1ssmSingle.push_back(singleCell);
+ ret1->pushBackSilent((*it2)->getNumberOfCells()); ret2->pushBackSilent(rk);
+ }
+ }
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m1ssmSingle2=MEDCouplingUMesh::MergeUMeshesOnSameCoords(m1ssmSingle);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> renum=m1ssmSingle2->sortCellsInMEDFileFrmt();
+ std::vector<const MEDCouplingUMesh *> m1ssmfinal(m1ssm.size());
+ for(std::size_t i=0;i<m1ssm.size();i++)
+ m1ssmfinal[renum->getIJ(i,0)]=m1ssm[i];
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret0=MEDCouplingUMesh::MergeUMeshesOnSameCoords(m1ssmfinal);
+ szOfCellGrpOfSameType=ret1->renumber(renum->getConstPointer());
+ idInMsOfCellGrpOfSameType=ret2->renumber(renum->getConstPointer());
+ return ret0.retn();
+}
+
+/*!
+ * This method returns a newly created DataArrayInt instance.
+ * This method retrieves cell ids in [ \a begin, \a end ) that have the type \a type.
+ */
+DataArrayInt *MEDCouplingUMesh::keepCellIdsByType(INTERP_KERNEL::NormalizedCellType type, const int *begin, const int *end) const
+{
+ checkFullyDefined();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connIndex=_nodal_connec_index->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(0,1);
+ for(const int *w=begin;w!=end;w++)
+ if((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*w]]==type)
+ ret->pushBackSilent(*w);
+ return ret.retn();
+}
+
+/*!
+ * This method makes the assumption that da->getNumberOfTuples()<this->getNumberOfCells(). This method makes the assumption that ids contained in 'da'
+ * are in [0:getNumberOfCells())
+ */
+DataArrayInt *MEDCouplingUMesh::convertCellArrayPerGeoType(const DataArrayInt *da) const
+{
+ checkFullyDefined();
+ const int *conn=_nodal_connec->getConstPointer();
+ const int *connI=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ std::set<INTERP_KERNEL::NormalizedCellType> types(getAllGeoTypes());
+ int *tmp=new int[nbOfCells];
+ for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=types.begin();iter!=types.end();iter++)
+ {
+ int j=0;
+ for(const int *i=connI;i!=connI+nbOfCells;i++)
+ if((INTERP_KERNEL::NormalizedCellType)conn[*i]==(*iter))
+ tmp[std::distance(connI,i)]=j++;
+ }
+ DataArrayInt *ret=DataArrayInt::New();
+ ret->alloc(da->getNumberOfTuples(),da->getNumberOfComponents());
+ ret->copyStringInfoFrom(*da);
+ int *retPtr=ret->getPointer();
+ const int *daPtr=da->getConstPointer();
+ int nbOfElems=da->getNbOfElems();
+ for(int k=0;k<nbOfElems;k++)
+ retPtr[k]=tmp[daPtr[k]];
+ delete [] tmp;
+ return ret;
+}
+
+/*!
+ * This method reduced number of cells of this by keeping cells whose type is different from 'type' and if type=='type'
+ * This method \b works \b for mesh sorted by type.
+ * cells whose ids is in 'idsPerGeoType' array.
+ * This method conserves coords and name of mesh.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::keepSpecifiedCells(INTERP_KERNEL::NormalizedCellType type, const int *idsPerGeoTypeBg, const int *idsPerGeoTypeEnd) const
+{
+ std::vector<int> code=getDistributionOfTypes();
+ std::size_t nOfTypesInThis=code.size()/3;
+ int sz=0,szOfType=0;
+ for(std::size_t i=0;i<nOfTypesInThis;i++)
+ {
+ if(code[3*i]!=type)
+ sz+=code[3*i+1];
+ else
+ szOfType=code[3*i+1];
+ }
+ for(const int *work=idsPerGeoTypeBg;work!=idsPerGeoTypeEnd;work++)
+ if(*work<0 || *work>=szOfType)
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::keepSpecifiedCells : Request on type " << type << " at place #" << std::distance(idsPerGeoTypeBg,work) << " value " << *work;
+ oss << ". It should be in [0," << szOfType << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> idsTokeep=DataArrayInt::New(); idsTokeep->alloc(sz+(int)std::distance(idsPerGeoTypeBg,idsPerGeoTypeEnd),1);
+ int *idsPtr=idsTokeep->getPointer();
+ int offset=0;
+ for(std::size_t i=0;i<nOfTypesInThis;i++)
+ {
+ if(code[3*i]!=type)
+ for(int j=0;j<code[3*i+1];j++)
+ *idsPtr++=offset+j;
+ else
+ idsPtr=std::transform(idsPerGeoTypeBg,idsPerGeoTypeEnd,idsPtr,std::bind2nd(std::plus<int>(),offset));
+ offset+=code[3*i+1];
+ }
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(idsTokeep->begin(),idsTokeep->end(),true));
+ ret->copyTinyInfoFrom(this);
+ return ret.retn();
+}
+
+/*!
+ * This method returns a vector of size 'this->getNumberOfCells()'.
+ * This method retrieves for each cell in \a this if it is linear (false) or quadratic(true).
+ */
+std::vector<bool> MEDCouplingUMesh::getQuadraticStatus() const
+{
+ int ncell=getNumberOfCells();
+ std::vector<bool> ret(ncell);
+ const int *cI=getNodalConnectivityIndex()->getConstPointer();
+ const int *c=getNodalConnectivity()->getConstPointer();
+ for(int i=0;i<ncell;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)c[cI[i]];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
+ ret[i]=cm.isQuadratic();
+ }
+ return ret;
+}
+
+/*!
+ * Returns a newly created mesh (with ref count ==1) that contains merge of \a this and \a other.
+ */
+MEDCouplingMesh *MEDCouplingUMesh::mergeMyselfWith(const MEDCouplingMesh *other) const
+{
+ if(other->getType()!=UNSTRUCTURED)
+ throw INTERP_KERNEL::Exception("Merge of umesh only available with umesh each other !");
+ const MEDCouplingUMesh *otherC=static_cast<const MEDCouplingUMesh *>(other);
+ return MergeUMeshes(this,otherC);
+}
+
+/*!
+ * Returns a new DataArrayDouble holding barycenters of all cells. The barycenter is
+ * computed by averaging coordinates of cell nodes, so this method is not a right
+ * choice for degnerated meshes (not well oriented, cells with measure close to zero).
+ * \return DataArrayDouble * - a new instance of DataArrayDouble, of size \a
+ * this->getNumberOfCells() tuples per \a this->getSpaceDimension()
+ * components. The caller is to delete this array using decrRef() as it is
+ * no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ * \sa MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell
+ */
+DataArrayDouble *MEDCouplingUMesh::getBarycenterAndOwner() const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret=DataArrayDouble::New();
+ int spaceDim=getSpaceDimension();
+ int nbOfCells=getNumberOfCells();
+ ret->alloc(nbOfCells,spaceDim);
+ ret->copyStringInfoFrom(*getCoords());
+ double *ptToFill=ret->getPointer();
+ const int *nodal=_nodal_connec->getConstPointer();
+ const int *nodalI=_nodal_connec_index->getConstPointer();
+ const double *coor=_coords->getConstPointer();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[i]];
+ INTERP_KERNEL::computeBarycenter2<int,INTERP_KERNEL::ALL_C_MODE>(type,nodal+nodalI[i]+1,nodalI[i+1]-nodalI[i]-1,coor,spaceDim,ptToFill);
+ ptToFill+=spaceDim;
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method computes for each cell in \a this, the location of the iso barycenter of nodes constituting
+ * the cell. Contrary to badly named MEDCouplingUMesh::getBarycenterAndOwner method that returns the center of inertia of the
+ *
+ * \return a newly allocated DataArrayDouble instance that the caller has to deal with. The returned
+ * DataArrayDouble instance will have \c this->getNumberOfCells() tuples and \c this->getSpaceDimension() components.
+ *
+ * \sa MEDCouplingUMesh::getBarycenterAndOwner
+ * \throw If \a this is not fully defined (coordinates and connectivity)
+ * \throw If there is presence in nodal connectivity in \a this of node ids not in [0, \c this->getNumberOfNodes() )
+ */
+DataArrayDouble *MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell() const
+{
+ checkFullyDefined();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret=DataArrayDouble::New();
+ int spaceDim=getSpaceDimension();
+ int nbOfCells=getNumberOfCells();
+ int nbOfNodes=getNumberOfNodes();
+ ret->alloc(nbOfCells,spaceDim);
+ double *ptToFill=ret->getPointer();
+ const int *nodal=_nodal_connec->getConstPointer();
+ const int *nodalI=_nodal_connec_index->getConstPointer();
+ const double *coor=_coords->getConstPointer();
+ for(int i=0;i<nbOfCells;i++,ptToFill+=spaceDim)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[i]];
+ std::fill(ptToFill,ptToFill+spaceDim,0.);
+ if(type!=INTERP_KERNEL::NORM_POLYHED)
+ {
+ for(const int *conn=nodal+nodalI[i]+1;conn!=nodal+nodalI[i+1];conn++)
+ {
+ if(*conn>=0 && *conn<nbOfNodes)
+ std::transform(coor+spaceDim*conn[0],coor+spaceDim*(conn[0]+1),ptToFill,ptToFill,std::plus<double>());
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell #" << i << " presence of nodeId #" << *conn << " should be in [0," << nbOfNodes << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ int nbOfNodesInCell=nodalI[i+1]-nodalI[i]-1;
+ if(nbOfNodesInCell>0)
+ std::transform(ptToFill,ptToFill+spaceDim,ptToFill,std::bind2nd(std::multiplies<double>(),1./(double)nbOfNodesInCell));
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell #" << i << " presence of cell with no nodes !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ else
+ {
+ std::set<int> s(nodal+nodalI[i]+1,nodal+nodalI[i+1]);
+ s.erase(-1);
+ for(std::set<int>::const_iterator it=s.begin();it!=s.end();it++)
+ {
+ if(*it>=0 && *it<nbOfNodes)
+ std::transform(coor+spaceDim*(*it),coor+spaceDim*((*it)+1),ptToFill,ptToFill,std::plus<double>());
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell polyhedron cell #" << i << " presence of nodeId #" << *it << " should be in [0," << nbOfNodes << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ if(!s.empty())
+ std::transform(ptToFill,ptToFill+spaceDim,ptToFill,std::bind2nd(std::multiplies<double>(),1./(double)s.size()));
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on polyhedron cell #" << i << " there are no nodes !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ }
+ return ret.retn();
+}
+
+/*!
+ * Returns a new DataArrayDouble holding barycenters of specified cells. The
+ * barycenter is computed by averaging coordinates of cell nodes. The cells to treat
+ * are specified via an array of cell ids.
+ * \warning Validity of the specified cell ids is not checked!
+ * Valid range is [ 0, \a this->getNumberOfCells() ).
+ * \param [in] begin - an array of cell ids of interest.
+ * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
+ * \return DataArrayDouble * - a new instance of DataArrayDouble, of size ( \a
+ * end - \a begin ) tuples per \a this->getSpaceDimension() components. The
+ * caller is to delete this array using decrRef() as it is no more needed.
+ * \throw If the coordinates array is not set.
+ * \throw If the nodal connectivity of cells is not defined.
+ *
+ * \if ENABLE_EXAMPLES
+ * \ref cpp_mcumesh_getPartBarycenterAndOwner "Here is a C++ example".<br>
+ * \ref py_mcumesh_getPartBarycenterAndOwner "Here is a Python example".
+ * \endif
+ */
+DataArrayDouble *MEDCouplingUMesh::getPartBarycenterAndOwner(const int *begin, const int *end) const
+{
+ DataArrayDouble *ret=DataArrayDouble::New();
+ int spaceDim=getSpaceDimension();
+ int nbOfTuple=(int)std::distance(begin,end);
+ ret->alloc(nbOfTuple,spaceDim);
+ double *ptToFill=ret->getPointer();
+ double *tmp=new double[spaceDim];
+ const int *nodal=_nodal_connec->getConstPointer();
+ const int *nodalI=_nodal_connec_index->getConstPointer();
+ const double *coor=_coords->getConstPointer();
+ for(const int *w=begin;w!=end;w++)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[*w]];
+ INTERP_KERNEL::computeBarycenter2<int,INTERP_KERNEL::ALL_C_MODE>(type,nodal+nodalI[*w]+1,nodalI[*w+1]-nodalI[*w]-1,coor,spaceDim,ptToFill);
+ ptToFill+=spaceDim;
+ }
+ delete [] tmp;
+ return ret;
+}
+
+/*!
+ * Returns a DataArrayDouble instance giving for each cell in \a this the equation of plane given by "a*X+b*Y+c*Z+d=0".
+ * So the returned instance will have 4 components and \c this->getNumberOfCells() tuples.
+ * So this method expects that \a this has a spaceDimension equal to 3 and meshDimension equal to 2.
+ * The computation of the plane equation is done using each time the 3 first nodes of 2D cells.
+ * This method is useful to detect 2D cells in 3D space that are not coplanar.
+ *
+ * \return DataArrayDouble * - a new instance of DataArrayDouble having 4 components and a number of tuples equal to number of cells in \a this.
+ * \throw If spaceDim!=3 or meshDim!=2.
+ * \throw If connectivity of \a this is invalid.
+ * \throw If connectivity of a cell in \a this points to an invalid node.
+ */
+DataArrayDouble *MEDCouplingUMesh::computePlaneEquationOf3DFaces() const
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret(DataArrayDouble::New());
+ int nbOfCells(getNumberOfCells()),nbOfNodes(getNumberOfNodes());
+ if(getSpaceDimension()!=3 || getMeshDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computePlaneEquationOf3DFaces : This method must be applied on a mesh having meshDimension equal 2 and a spaceDimension equal to 3 !");
+ ret->alloc(nbOfCells,4);
+ double *retPtr(ret->getPointer());
+ const int *nodal(_nodal_connec->begin()),*nodalI(_nodal_connec_index->begin());
+ const double *coor(_coords->begin());
+ for(int i=0;i<nbOfCells;i++,nodalI++,retPtr+=4)
+ {
+ double matrix[16]={0,0,0,1,0,0,0,1,0,0,0,1,1,1,1,0},matrix2[16];
+ if(nodalI[1]-nodalI[0]>=3)
+ {
+ for(int j=0;j<3;j++)
+ {
+ int nodeId(nodal[nodalI[0]+1+j]);
+ if(nodeId>=0 && nodeId<nbOfNodes)
+ std::copy(coor+nodeId*3,coor+(nodeId+1)*3,matrix+4*j);
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::computePlaneEquationOf3DFaces : invalid 2D cell #" << i << " ! This cell points to an invalid nodeId : " << nodeId << " !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::computePlaneEquationOf3DFaces : invalid 2D cell #" << i << " ! Must be constitued by more than 3 nodes !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ INTERP_KERNEL::inverseMatrix(matrix,4,matrix2);
+ retPtr[0]=matrix2[3]; retPtr[1]=matrix2[7]; retPtr[2]=matrix2[11]; retPtr[3]=matrix2[15];
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method expects as input a DataArrayDouble non nul instance 'da' that should be allocated. If not an exception is thrown.
+ *
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::Build0DMeshFromCoords(DataArrayDouble *da)
+{
+ if(!da)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Build0DMeshFromCoords : instance of DataArrayDouble must be not null !");
+ da->checkAllocated();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New(da->getName(),0);
+ ret->setCoords(da);
+ int nbOfTuples=da->getNumberOfTuples();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cI=DataArrayInt::New();
+ c->alloc(2*nbOfTuples,1);
+ cI->alloc(nbOfTuples+1,1);
+ int *cp=c->getPointer();
+ int *cip=cI->getPointer();
+ *cip++=0;
+ for(int i=0;i<nbOfTuples;i++)
+ {
+ *cp++=INTERP_KERNEL::NORM_POINT1;
+ *cp++=i;
+ *cip++=2*(i+1);
+ }
+ ret->setConnectivity(c,cI,true);
+ return ret.retn();
+}
+/*!
+ * Creates a new MEDCouplingUMesh by concatenating two given meshes of the same dimension.
+ * Cells and nodes of
+ * the first mesh precede cells and nodes of the second mesh within the result mesh.
+ * \param [in] mesh1 - the first mesh.
+ * \param [in] mesh2 - the second mesh.
+ * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
+ * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
+ * is no more needed.
+ * \throw If \a mesh1 == NULL or \a mesh2 == NULL.
+ * \throw If the coordinates array is not set in none of the meshes.
+ * \throw If \a mesh1->getMeshDimension() < 0 or \a mesh2->getMeshDimension() < 0.
+ * \throw If \a mesh1->getMeshDimension() != \a mesh2->getMeshDimension().
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshes(const MEDCouplingUMesh *mesh1, const MEDCouplingUMesh *mesh2)
+{
+ std::vector<const MEDCouplingUMesh *> tmp(2);
+ tmp[0]=const_cast<MEDCouplingUMesh *>(mesh1); tmp[1]=const_cast<MEDCouplingUMesh *>(mesh2);
+ return MergeUMeshes(tmp);
+}
+
+/*!
+ * Creates a new MEDCouplingUMesh by concatenating all given meshes of the same dimension.
+ * Cells and nodes of
+ * the *i*-th mesh precede cells and nodes of the (*i*+1)-th mesh within the result mesh.
+ * \param [in] a - a vector of meshes (MEDCouplingUMesh) to concatenate.
+ * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
+ * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
+ * is no more needed.
+ * \throw If \a a.size() == 0.
+ * \throw If \a a[ *i* ] == NULL.
+ * \throw If the coordinates array is not set in none of the meshes.
+ * \throw If \a a[ *i* ]->getMeshDimension() < 0.
+ * \throw If the meshes in \a a are of different dimension (getMeshDimension()).
+*/
+MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshes(std::vector<const MEDCouplingUMesh *>& a)
+{
+ std::size_t sz=a.size();
+ if(sz==0)
+ return MergeUMeshesLL(a);
+ for(std::size_t ii=0;ii<sz;ii++)
+ if(!a[ii])
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::MergeUMeshes : item #" << ii << " in input array of size "<< sz << " is empty !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > bb(sz);
+ std::vector< const MEDCouplingUMesh * > aa(sz);
+ int spaceDim=-3;
+ for(std::size_t i=0;i<sz && spaceDim==-3;i++)
+ {
+ const MEDCouplingUMesh *cur=a[i];
+ const DataArrayDouble *coo=cur->getCoords();
+ if(coo)
+ spaceDim=coo->getNumberOfComponents();
+ }
+ if(spaceDim==-3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::MergeUMeshes : no spaceDim specified ! unable to perform merge !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ bb[i]=a[i]->buildSetInstanceFromThis(spaceDim);
+ aa[i]=bb[i];
+ }
+ return MergeUMeshesLL(aa);
+}
+
+/// @cond INTERNAL
+
+MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshesLL(std::vector<const MEDCouplingUMesh *>& a)
+{
+ if(a.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::MergeUMeshes : input array must be NON EMPTY !");
+ std::vector<const MEDCouplingUMesh *>::const_iterator it=a.begin();
+ int meshDim=(*it)->getMeshDimension();
+ int nbOfCells=(*it)->getNumberOfCells();
+ int meshLgth=(*it++)->getMeshLength();
+ for(;it!=a.end();it++)
+ {
+ if(meshDim!=(*it)->getMeshDimension())
+ throw INTERP_KERNEL::Exception("Mesh dimensions mismatches, MergeUMeshes impossible !");
+ nbOfCells+=(*it)->getNumberOfCells();
+ meshLgth+=(*it)->getMeshLength();
+ }
+ std::vector<const MEDCouplingPointSet *> aps(a.size());
+ std::copy(a.begin(),a.end(),aps.begin());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> pts=MergeNodesArray(aps);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New("merge",meshDim);
+ ret->setCoords(pts);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c=DataArrayInt::New();
+ c->alloc(meshLgth,1);
+ int *cPtr=c->getPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cI=DataArrayInt::New();
+ cI->alloc(nbOfCells+1,1);
+ int *cIPtr=cI->getPointer();
+ *cIPtr++=0;
+ int offset=0;
+ int offset2=0;
+ for(it=a.begin();it!=a.end();it++)
+ {
+ int curNbOfCell=(*it)->getNumberOfCells();
+ const int *curCI=(*it)->_nodal_connec_index->getConstPointer();
+ const int *curC=(*it)->_nodal_connec->getConstPointer();
+ cIPtr=std::transform(curCI+1,curCI+curNbOfCell+1,cIPtr,std::bind2nd(std::plus<int>(),offset));
+ for(int j=0;j<curNbOfCell;j++)
+ {
+ const int *src=curC+curCI[j];
+ *cPtr++=*src++;
+ for(;src!=curC+curCI[j+1];src++,cPtr++)
+ {
+ if(*src!=-1)
+ *cPtr=*src+offset2;
+ else
+ *cPtr=-1;
+ }
+ }
+ offset+=curCI[curNbOfCell];
+ offset2+=(*it)->getNumberOfNodes();
+ }
+ //
+ ret->setConnectivity(c,cI,true);
+ return ret.retn();
+}
+
+/// @endcond
+
+/*!
+ * Creates a new MEDCouplingUMesh by concatenating cells of two given meshes of same
+ * dimension and sharing the node coordinates array.
+ * All cells of the first mesh precede all cells of the second mesh
+ * within the result mesh.
+ * \param [in] mesh1 - the first mesh.
+ * \param [in] mesh2 - the second mesh.
+ * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
+ * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
+ * is no more needed.
+ * \throw If \a mesh1 == NULL or \a mesh2 == NULL.
+ * \throw If the meshes do not share the node coordinates array.
+ * \throw If \a mesh1->getMeshDimension() < 0 or \a mesh2->getMeshDimension() < 0.
+ * \throw If \a mesh1->getMeshDimension() != \a mesh2->getMeshDimension().
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshesOnSameCoords(const MEDCouplingUMesh *mesh1, const MEDCouplingUMesh *mesh2)
+{
+ std::vector<const MEDCouplingUMesh *> tmp(2);
+ tmp[0]=mesh1; tmp[1]=mesh2;
+ return MergeUMeshesOnSameCoords(tmp);
+}
+
+/*!
+ * Creates a new MEDCouplingUMesh by concatenating cells of all given meshes of same
+ * dimension and sharing the node coordinates array.
+ * All cells of the *i*-th mesh precede all cells of the
+ * (*i*+1)-th mesh within the result mesh.
+ * \param [in] a - a vector of meshes (MEDCouplingUMesh) to concatenate.
+ * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
+ * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
+ * is no more needed.
+ * \throw If \a a.size() == 0.
+ * \throw If \a a[ *i* ] == NULL.
+ * \throw If the meshes do not share the node coordinates array.
+ * \throw If \a a[ *i* ]->getMeshDimension() < 0.
+ * \throw If the meshes in \a a are of different dimension (getMeshDimension()).
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& meshes)
+{
+ if(meshes.empty())
+ throw INTERP_KERNEL::Exception("meshes input parameter is expected to be non empty.");
+ for(std::size_t ii=0;ii<meshes.size();ii++)
+ if(!meshes[ii])
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::MergeUMeshesOnSameCoords : item #" << ii << " in input array of size "<< meshes.size() << " is empty !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ const DataArrayDouble *coords=meshes.front()->getCoords();
+ int meshDim=meshes.front()->getMeshDimension();
+ std::vector<const MEDCouplingUMesh *>::const_iterator iter=meshes.begin();
+ int meshLgth=0;
+ int meshIndexLgth=0;
+ for(;iter!=meshes.end();iter++)
+ {
+ if(coords!=(*iter)->getCoords())
+ throw INTERP_KERNEL::Exception("meshes does not share the same coords ! Try using tryToShareSameCoords method !");
+ if(meshDim!=(*iter)->getMeshDimension())
+ throw INTERP_KERNEL::Exception("Mesh dimensions mismatches, FuseUMeshesOnSameCoords impossible !");
+ meshLgth+=(*iter)->getMeshLength();
+ meshIndexLgth+=(*iter)->getNumberOfCells();
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> nodal=DataArrayInt::New();
+ nodal->alloc(meshLgth,1);
+ int *nodalPtr=nodal->getPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> nodalIndex=DataArrayInt::New();
+ nodalIndex->alloc(meshIndexLgth+1,1);
+ int *nodalIndexPtr=nodalIndex->getPointer();
+ int offset=0;
+ for(iter=meshes.begin();iter!=meshes.end();iter++)
+ {
+ const int *nod=(*iter)->getNodalConnectivity()->getConstPointer();
+ const int *index=(*iter)->getNodalConnectivityIndex()->getConstPointer();
+ int nbOfCells=(*iter)->getNumberOfCells();
+ int meshLgth2=(*iter)->getMeshLength();
+ nodalPtr=std::copy(nod,nod+meshLgth2,nodalPtr);
+ if(iter!=meshes.begin())
+ nodalIndexPtr=std::transform(index+1,index+nbOfCells+1,nodalIndexPtr,std::bind2nd(std::plus<int>(),offset));
+ else
+ nodalIndexPtr=std::copy(index,index+nbOfCells+1,nodalIndexPtr);
+ offset+=meshLgth2;
+ }
+ MEDCouplingUMesh *ret=MEDCouplingUMesh::New();
+ ret->setName("merge");
+ ret->setMeshDimension(meshDim);
+ ret->setConnectivity(nodal,nodalIndex,true);
+ ret->setCoords(coords);
+ return ret;
+}
+
+/*!
+ * Creates a new MEDCouplingUMesh by concatenating cells of all given meshes of same
+ * dimension and sharing the node coordinates array. Cells of the *i*-th mesh precede
+ * cells of the (*i*+1)-th mesh within the result mesh. Duplicates of cells are
+ * removed from \a this mesh and arrays mapping between new and old cell ids in "Old to
+ * New" mode are returned for each input mesh.
+ * \param [in] meshes - a vector of meshes (MEDCouplingUMesh) to concatenate.
+ * \param [in] compType - specifies a cell comparison technique. For meaning of its
+ * valid values [0,1,2], see zipConnectivityTraducer().
+ * \param [in,out] corr - an array of DataArrayInt, of the same size as \a
+ * meshes. The *i*-th array describes cell ids mapping for \a meshes[ *i* ]
+ * mesh. The caller is to delete each of the arrays using decrRef() as it is
+ * no more needed.
+ * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
+ * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
+ * is no more needed.
+ * \throw If \a meshes.size() == 0.
+ * \throw If \a meshes[ *i* ] == NULL.
+ * \throw If the meshes do not share the node coordinates array.
+ * \throw If \a meshes[ *i* ]->getMeshDimension() < 0.
+ * \throw If the \a meshes are of different dimension (getMeshDimension()).
+ * \throw If the nodal connectivity of cells of any of \a meshes is not defined.
+ * \throw If the nodal connectivity any of \a meshes includes an invalid id.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::FuseUMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& meshes, int compType, std::vector<DataArrayInt *>& corr)
+{
+ //All checks are delegated to MergeUMeshesOnSameCoords
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MergeUMeshesOnSameCoords(meshes);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2n=ret->zipConnectivityTraducer(compType);
+ corr.resize(meshes.size());
+ std::size_t nbOfMeshes=meshes.size();
+ int offset=0;
+ const int *o2nPtr=o2n->getConstPointer();
+ for(std::size_t i=0;i<nbOfMeshes;i++)
+ {
+ DataArrayInt *tmp=DataArrayInt::New();
+ int curNbOfCells=meshes[i]->getNumberOfCells();
+ tmp->alloc(curNbOfCells,1);
+ std::copy(o2nPtr+offset,o2nPtr+offset+curNbOfCells,tmp->getPointer());
+ offset+=curNbOfCells;
+ tmp->setName(meshes[i]->getName());
+ corr[i]=tmp;
+ }
+ return ret.retn();
+}
+
+/*!
+ * Makes all given meshes share the nodal connectivity array. The common connectivity
+ * array is created by concatenating the connectivity arrays of all given meshes. All
+ * the given meshes must be of the same space dimension but dimension of cells **can
+ * differ**. This method is particulary useful in MEDLoader context to build a \ref
+ * ParaMEDMEM::MEDFileUMesh "MEDFileUMesh" instance that expects that underlying
+ * MEDCouplingUMesh'es of different dimension share the same nodal connectivity array.
+ * \param [in,out] meshes - a vector of meshes to update.
+ * \throw If any of \a meshes is NULL.
+ * \throw If the coordinates array is not set in any of \a meshes.
+ * \throw If the nodal connectivity of cells is not defined in any of \a meshes.
+ * \throw If \a meshes are of different space dimension.
+ */
+void MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords(const std::vector<MEDCouplingUMesh *>& meshes)
+{
+ std::size_t sz=meshes.size();
+ if(sz==0 || sz==1)
+ return;
+ std::vector< const DataArrayDouble * > coords(meshes.size());
+ std::vector< const DataArrayDouble * >::iterator it2=coords.begin();
+ for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++,it2++)
+ {
+ if((*it))
+ {
+ (*it)->checkConnectivityFullyDefined();
+ const DataArrayDouble *coo=(*it)->getCoords();
+ if(coo)
+ *it2=coo;
+ else
+ {
+ std::ostringstream oss; oss << " MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords : Item #" << std::distance(meshes.begin(),it) << " inside the vector of length " << meshes.size();
+ oss << " has no coordinate array defined !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ else
+ {
+ std::ostringstream oss; oss << " MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords : Item #" << std::distance(meshes.begin(),it) << " inside the vector of length " << meshes.size();
+ oss << " is null !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> res=DataArrayDouble::Aggregate(coords);
+ std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();
+ int offset=(*it)->getNumberOfNodes();
+ (*it++)->setCoords(res);
+ for(;it!=meshes.end();it++)
+ {
+ int oldNumberOfNodes=(*it)->getNumberOfNodes();
+ (*it)->setCoords(res);
+ (*it)->shiftNodeNumbersInConn(offset);
+ offset+=oldNumberOfNodes;
+ }
+}
+
+/*!
+ * Merges nodes coincident with a given precision within all given meshes that share
+ * the nodal connectivity array. The given meshes **can be of different** mesh
+ * dimension. This method is particulary useful in MEDLoader context to build a \ref
+ * ParaMEDMEM::MEDFileUMesh "MEDFileUMesh" instance that expects that underlying
+ * MEDCouplingUMesh'es of different dimension share the same nodal connectivity array.
+ * \param [in,out] meshes - a vector of meshes to update.
+ * \param [in] eps - the precision used to detect coincident nodes (infinite norm).
+ * \throw If any of \a meshes is NULL.
+ * \throw If the \a meshes do not share the same node coordinates array.
+ * \throw If the nodal connectivity of cells is not defined in any of \a meshes.
+ */
+void MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords(const std::vector<MEDCouplingUMesh *>& meshes, double eps)
+{
+ if(meshes.empty())
+ return ;
+ std::set<const DataArrayDouble *> s;
+ for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++)
+ {
+ if(*it)
+ s.insert((*it)->getCoords());
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords : In input vector of unstructured meshes of size " << meshes.size() << " the element #" << std::distance(meshes.begin(),it) << " is null !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ if(s.size()!=1)
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords : In input vector of unstructured meshes of size " << meshes.size() << ", it appears that they do not share the same instance of DataArrayDouble for coordiantes ! tryToShareSameCoordsPermute method can help to reach that !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ const DataArrayDouble *coo=*(s.begin());
+ if(!coo)
+ return;
+ //
+ DataArrayInt *comm,*commI;
+ coo->findCommonTuples(eps,-1,comm,commI);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp1(comm),tmp2(commI);
+ int oldNbOfNodes=coo->getNumberOfTuples();
+ int newNbOfNodes;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2n=DataArrayInt::BuildOld2NewArrayFromSurjectiveFormat2(oldNbOfNodes,comm->begin(),commI->begin(),commI->end(),newNbOfNodes);
+ if(oldNbOfNodes==newNbOfNodes)
+ return ;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> newCoords=coo->renumberAndReduce(o2n->getConstPointer(),newNbOfNodes);
+ for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++)
+ {
+ (*it)->renumberNodesInConn(o2n->getConstPointer());
+ (*it)->setCoords(newCoords);
+ }
+}
+
+/*!
+ * This method takes in input a cell defined by its MEDcouplingUMesh connectivity [ \a connBg , \a connEnd ) and returns its extruded cell by inserting the result at the end of ret.
+ * \param nbOfNodesPerLev in parameter that specifies the number of nodes of one slice of global dataset
+ * \param isQuad specifies the policy of connectivity.
+ * @ret in/out parameter in which the result will be append
+ */
+void MEDCouplingUMesh::AppendExtrudedCell(const int *connBg, const int *connEnd, int nbOfNodesPerLev, bool isQuad, std::vector<int>& ret)
+{
+ INTERP_KERNEL::NormalizedCellType flatType=(INTERP_KERNEL::NormalizedCellType)connBg[0];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(flatType);
+ ret.push_back(cm.getExtrudedType());
+ int deltaz=isQuad?2*nbOfNodesPerLev:nbOfNodesPerLev;
+ switch(flatType)
+ {
+ case INTERP_KERNEL::NORM_POINT1:
+ {
+ ret.push_back(connBg[1]);
+ ret.push_back(connBg[1]+nbOfNodesPerLev);
+ break;
+ }
+ case INTERP_KERNEL::NORM_SEG2:
+ {
+ int conn[4]={connBg[1],connBg[2],connBg[2]+deltaz,connBg[1]+deltaz};
+ ret.insert(ret.end(),conn,conn+4);
+ break;
+ }
+ case INTERP_KERNEL::NORM_SEG3:
+ {
+ int conn[8]={connBg[1],connBg[3],connBg[3]+deltaz,connBg[1]+deltaz,connBg[2],connBg[3]+nbOfNodesPerLev,connBg[2]+deltaz,connBg[1]+nbOfNodesPerLev};
+ ret.insert(ret.end(),conn,conn+8);
+ break;
+ }
+ case INTERP_KERNEL::NORM_QUAD4:
+ {
+ int conn[8]={connBg[1],connBg[2],connBg[3],connBg[4],connBg[1]+deltaz,connBg[2]+deltaz,connBg[3]+deltaz,connBg[4]+deltaz};
+ ret.insert(ret.end(),conn,conn+8);
+ break;
+ }
+ case INTERP_KERNEL::NORM_TRI3:
+ {
+ int conn[6]={connBg[1],connBg[2],connBg[3],connBg[1]+deltaz,connBg[2]+deltaz,connBg[3]+deltaz};
+ ret.insert(ret.end(),conn,conn+6);
+ break;
+ }
+ case INTERP_KERNEL::NORM_TRI6:
+ {
+ int conn[15]={connBg[1],connBg[2],connBg[3],connBg[1]+deltaz,connBg[2]+deltaz,connBg[3]+deltaz,connBg[4],connBg[5],connBg[6],connBg[4]+deltaz,connBg[5]+deltaz,connBg[6]+deltaz,
+ connBg[1]+nbOfNodesPerLev,connBg[2]+nbOfNodesPerLev,connBg[3]+nbOfNodesPerLev};
+ ret.insert(ret.end(),conn,conn+15);
+ break;
+ }
+ case INTERP_KERNEL::NORM_QUAD8:
+ {
+ int conn[20]={
+ connBg[1],connBg[2],connBg[3],connBg[4],connBg[1]+deltaz,connBg[2]+deltaz,connBg[3]+deltaz,connBg[4]+deltaz,
+ connBg[5],connBg[6],connBg[7],connBg[8],connBg[5]+deltaz,connBg[6]+deltaz,connBg[7]+deltaz,connBg[8]+deltaz,
+ connBg[1]+nbOfNodesPerLev,connBg[2]+nbOfNodesPerLev,connBg[3]+nbOfNodesPerLev,connBg[4]+nbOfNodesPerLev
+ };
+ ret.insert(ret.end(),conn,conn+20);
+ break;
+ }
+ case INTERP_KERNEL::NORM_POLYGON:
+ {
+ std::back_insert_iterator< std::vector<int> > ii(ret);
+ std::copy(connBg+1,connEnd,ii);
+ *ii++=-1;
+ std::reverse_iterator<const int *> rConnBg(connEnd);
+ std::reverse_iterator<const int *> rConnEnd(connBg+1);
+ std::transform(rConnBg,rConnEnd,ii,std::bind2nd(std::plus<int>(),deltaz));
+ std::size_t nbOfRadFaces=std::distance(connBg+1,connEnd);
+ for(std::size_t i=0;i<nbOfRadFaces;i++)
+ {
+ *ii++=-1;
+ int conn[4]={connBg[(i+1)%nbOfRadFaces+1],connBg[i+1],connBg[i+1]+deltaz,connBg[(i+1)%nbOfRadFaces+1]+deltaz};
+ std::copy(conn,conn+4,ii);
+ }
+ break;
+ }
+ default:
+ throw INTERP_KERNEL::Exception("A flat type has been detected that has not its extruded representation !");
+ }
+}
+
+/*!
+ * This static operates only for coords in 3D. The polygon is specfied by its connectivity nodes in [ \a begin , \a end ).
+ */
+bool MEDCouplingUMesh::IsPolygonWellOriented(bool isQuadratic, const double *vec, const int *begin, const int *end, const double *coords)
+{
+ std::size_t i, ip1;
+ double v[3]={0.,0.,0.};
+ std::size_t sz=std::distance(begin,end);
+ if(isQuadratic)
+ sz/=2;
+ for(i=0;i<sz;i++)
+ {
+ v[0]+=coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]+2]-coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]+1];
+ v[1]+=coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]]-coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+2];
+ v[2]+=coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+1]-coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]];
+ }
+ double ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
+
+ // Try using quadratic points if standard points are degenerated (for example a QPOLYG with two
+ // SEG3 forming a circle):
+ if (fabs(ret) < INTERP_KERNEL::DEFAULT_ABS_TOL && isQuadratic)
+ {
+ v[0] = 0.0; v[1] = 0.0; v[2] = 0.0;
+ for(std::size_t j=0;j<sz;j++)
+ {
+ if (j%2) // current point i is quadratic, next point i+1 is standard
+ {
+ i = sz+j;
+ ip1 = (j+1)%sz; // ip1 = "i+1"
+ }
+ else // current point i is standard, next point i+1 is quadratic
+ {
+ i = j;
+ ip1 = j+sz;
+ }
+ v[0]+=coords[3*begin[i]+1]*coords[3*begin[ip1]+2]-coords[3*begin[i]+2]*coords[3*begin[ip1]+1];
+ v[1]+=coords[3*begin[i]+2]*coords[3*begin[ip1]]-coords[3*begin[i]]*coords[3*begin[ip1]+2];
+ v[2]+=coords[3*begin[i]]*coords[3*begin[ip1]+1]-coords[3*begin[i]+1]*coords[3*begin[ip1]];
+ }
+ ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
+ }
+ return (ret>0.);
+}
+
+/*!
+ * The polyhedron is specfied by its connectivity nodes in [ \a begin , \a end ).
+ */
+bool MEDCouplingUMesh::IsPolyhedronWellOriented(const int *begin, const int *end, const double *coords)
+{
+ std::vector<std::pair<int,int> > edges;
+ std::size_t nbOfFaces=std::count(begin,end,-1)+1;
+ const int *bgFace=begin;
+ for(std::size_t i=0;i<nbOfFaces;i++)
+ {
+ const int *endFace=std::find(bgFace+1,end,-1);
+ std::size_t nbOfEdgesInFace=std::distance(bgFace,endFace);
+ for(std::size_t j=0;j<nbOfEdgesInFace;j++)
+ {
+ std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
+ if(std::find(edges.begin(),edges.end(),p1)!=edges.end())
+ return false;
+ edges.push_back(p1);
+ }
+ bgFace=endFace+1;
+ }
+ return INTERP_KERNEL::calculateVolumeForPolyh2<int,INTERP_KERNEL::ALL_C_MODE>(begin,(int)std::distance(begin,end),coords)>-EPS_FOR_POLYH_ORIENTATION;
+}
+
+/*!
+ * The 3D extruded static cell (PENTA6,HEXA8,HEXAGP12...) its connectivity nodes in [ \a begin , \a end ).
+ */
+bool MEDCouplingUMesh::Is3DExtrudedStaticCellWellOriented(const int *begin, const int *end, const double *coords)
+{
+ double vec0[3],vec1[3];
+ std::size_t sz=std::distance(begin,end);
+ if(sz%2!=0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Is3DExtrudedStaticCellWellOriented : the length of nodal connectivity of extruded cell is not even !");
+ int nbOfNodes=(int)sz/2;
+ INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(begin,nbOfNodes,coords,vec0);
+ const double *pt0=coords+3*begin[0];
+ const double *pt1=coords+3*begin[nbOfNodes];
+ vec1[0]=pt1[0]-pt0[0]; vec1[1]=pt1[1]-pt0[1]; vec1[2]=pt1[2]-pt0[2];
+ return (vec0[0]*vec1[0]+vec0[1]*vec1[1]+vec0[2]*vec1[2])<0.;
+}
+
+void MEDCouplingUMesh::CorrectExtrudedStaticCell(int *begin, int *end)
+{
+ std::size_t sz=std::distance(begin,end);
+ INTERP_KERNEL::AutoPtr<int> tmp=new int[sz];
+ std::size_t nbOfNodes(sz/2);
+ std::copy(begin,end,(int *)tmp);
+ for(std::size_t j=1;j<nbOfNodes;j++)
+ {
+ begin[j]=tmp[nbOfNodes-j];
+ begin[j+nbOfNodes]=tmp[nbOfNodes+nbOfNodes-j];
+ }
+}
+
+bool MEDCouplingUMesh::IsTetra4WellOriented(const int *begin, const int *end, const double *coords)
+{
+ std::size_t sz=std::distance(begin,end);
+ if(sz!=4)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::IsTetra4WellOriented : Tetra4 cell with not 4 nodes ! Call checkCoherency2 !");
+ double vec0[3],vec1[3];
+ const double *pt0=coords+3*begin[0],*pt1=coords+3*begin[1],*pt2=coords+3*begin[2],*pt3=coords+3*begin[3];
+ vec0[0]=pt1[0]-pt0[0]; vec0[1]=pt1[1]-pt0[1]; vec0[2]=pt1[2]-pt0[2]; vec1[0]=pt2[0]-pt0[0]; vec1[1]=pt2[1]-pt0[1]; vec1[2]=pt2[2]-pt0[2];
+ return ((vec0[1]*vec1[2]-vec0[2]*vec1[1])*(pt3[0]-pt0[0])+(vec0[2]*vec1[0]-vec0[0]*vec1[2])*(pt3[1]-pt0[1])+(vec0[0]*vec1[1]-vec0[1]*vec1[0])*(pt3[2]-pt0[2]))<0;
+}
+
+bool MEDCouplingUMesh::IsPyra5WellOriented(const int *begin, const int *end, const double *coords)
+{
+ std::size_t sz=std::distance(begin,end);
+ if(sz!=5)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::IsPyra5WellOriented : Pyra5 cell with not 5 nodes ! Call checkCoherency2 !");
+ double vec0[3];
+ INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(begin,4,coords,vec0);
+ const double *pt0=coords+3*begin[0],*pt1=coords+3*begin[4];
+ return (vec0[0]*(pt1[0]-pt0[0])+vec0[1]*(pt1[1]-pt0[1])+vec0[2]*(pt1[2]-pt0[2]))<0.;
+}
+
+/*!
+ * This method performs a simplyfication of a single polyedron cell. To do that each face of cell whose connectivity is defined by [ \b begin , \b end )
+ * is compared with the others in order to find faces in the same plane (with approx of eps). If any, the cells are grouped together and projected to
+ * a 2D space.
+ *
+ * \param [in] eps is a relative precision that allows to establish if some 3D plane are coplanar or not.
+ * \param [in] coords the coordinates with nb of components exactly equal to 3
+ * \param [in] begin begin of the nodal connectivity (geometric type included) of a single polyhedron cell
+ * \param [in] end end of nodal connectivity of a single polyhedron cell (excluded)
+ * \param [out] res the result is put at the end of the vector without any alteration of the data.
+ */
+void MEDCouplingUMesh::SimplifyPolyhedronCell(double eps, const DataArrayDouble *coords, const int *begin, const int *end, DataArrayInt *res)
+{
+ int nbFaces=std::count(begin+1,end,-1)+1;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> v=DataArrayDouble::New(); v->alloc(nbFaces,3);
+ double *vPtr=v->getPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> p=DataArrayDouble::New(); p->alloc(nbFaces,1);
+ double *pPtr=p->getPointer();
+ const int *stFaceConn=begin+1;
+ for(int i=0;i<nbFaces;i++,vPtr+=3,pPtr++)
+ {
+ const int *endFaceConn=std::find(stFaceConn,end,-1);
+ ComputeVecAndPtOfFace(eps,coords->getConstPointer(),stFaceConn,endFaceConn,vPtr,pPtr);
+ stFaceConn=endFaceConn+1;
+ }
+ pPtr=p->getPointer(); vPtr=v->getPointer();
+ DataArrayInt *comm1=0,*commI1=0;
+ v->findCommonTuples(eps,-1,comm1,commI1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> comm1Auto(comm1),commI1Auto(commI1);
+ const int *comm1Ptr=comm1->getConstPointer();
+ const int *commI1Ptr=commI1->getConstPointer();
+ int nbOfGrps1=commI1Auto->getNumberOfTuples()-1;
+ res->pushBackSilent((int)INTERP_KERNEL::NORM_POLYHED);
+ //
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mm=MEDCouplingUMesh::New("",3);
+ mm->setCoords(const_cast<DataArrayDouble *>(coords)); mm->allocateCells(1); mm->insertNextCell(INTERP_KERNEL::NORM_POLYHED,(int)std::distance(begin+1,end),begin+1);
+ mm->finishInsertingCells();
+ //
+ for(int i=0;i<nbOfGrps1;i++)
+ {
+ int vecId=comm1Ptr[commI1Ptr[i]];
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmpgrp2=p->selectByTupleId(comm1Ptr+commI1Ptr[i],comm1Ptr+commI1Ptr[i+1]);
+ DataArrayInt *comm2=0,*commI2=0;
+ tmpgrp2->findCommonTuples(eps,-1,comm2,commI2);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> comm2Auto(comm2),commI2Auto(commI2);
+ const int *comm2Ptr=comm2->getConstPointer();
+ const int *commI2Ptr=commI2->getConstPointer();
+ int nbOfGrps2=commI2Auto->getNumberOfTuples()-1;
+ for(int j=0;j<nbOfGrps2;j++)
+ {
+ if(commI2Ptr[j+1]-commI2Ptr[j]<=1)
+ {
+ res->insertAtTheEnd(begin,end);
+ res->pushBackSilent(-1);
+ }
+ else
+ {
+ int pointId=comm1Ptr[commI1Ptr[i]+comm2Ptr[commI2Ptr[j]]];
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ids2=comm2->selectByTupleId2(commI2Ptr[j],commI2Ptr[j+1],1);
+ ids2->transformWithIndArr(comm1Ptr+commI1Ptr[i],comm1Ptr+commI1Ptr[i+1]);
+ DataArrayInt *tmp0=DataArrayInt::New(),*tmp1=DataArrayInt::New(),*tmp2=DataArrayInt::New(),*tmp3=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mm2=mm->buildDescendingConnectivity(tmp0,tmp1,tmp2,tmp3); tmp0->decrRef(); tmp1->decrRef(); tmp2->decrRef(); tmp3->decrRef();
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mm3=static_cast<MEDCouplingUMesh *>(mm2->buildPartOfMySelf(ids2->begin(),ids2->end(),true));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> idsNodeTmp=mm3->zipCoordsTraducer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> idsNode=idsNodeTmp->invertArrayO2N2N2O(mm3->getNumberOfNodes());
+ const int *idsNodePtr=idsNode->getConstPointer();
+ double center[3]; center[0]=pPtr[pointId]*vPtr[3*vecId]; center[1]=pPtr[pointId]*vPtr[3*vecId+1]; center[2]=pPtr[pointId]*vPtr[3*vecId+2];
+ double vec[3]; vec[0]=vPtr[3*vecId+1]; vec[1]=-vPtr[3*vecId]; vec[2]=0.;
+ double norm=vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2];
+ if(std::abs(norm)>eps)
+ {
+ double angle=INTERP_KERNEL::EdgeArcCircle::SafeAsin(norm);
+ mm3->rotate(center,vec,angle);
+ }
+ mm3->changeSpaceDimension(2);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mm4=mm3->buildSpreadZonesWithPoly();
+ const int *conn4=mm4->getNodalConnectivity()->getConstPointer();
+ const int *connI4=mm4->getNodalConnectivityIndex()->getConstPointer();
+ int nbOfCells=mm4->getNumberOfCells();
+ for(int k=0;k<nbOfCells;k++)
+ {
+ int l=0;
+ for(const int *work=conn4+connI4[k]+1;work!=conn4+connI4[k+1];work++,l++)
+ res->pushBackSilent(idsNodePtr[*work]);
+ res->pushBackSilent(-1);
+ }
+ }
+ }
+ }
+ res->popBackSilent();
+}
+
+/*!
+ * This method computes the normalized vector of the plane and the pos of the point belonging to the plane and the line defined by the vector going
+ * through origin. The plane is defined by its nodal connectivity [ \b begin, \b end ).
+ *
+ * \param [in] eps below that value the dot product of 2 vectors is considered as colinears
+ * \param [in] coords coordinates expected to have 3 components.
+ * \param [in] begin start of the nodal connectivity of the face.
+ * \param [in] end end of the nodal connectivity (excluded) of the face.
+ * \param [out] v the normalized vector of size 3
+ * \param [out] p the pos of plane
+ */
+void MEDCouplingUMesh::ComputeVecAndPtOfFace(double eps, const double *coords, const int *begin, const int *end, double *v, double *p)
+{
+ std::size_t nbPoints=std::distance(begin,end);
+ if(nbPoints<3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeVecAndPtOfFace : < of 3 points in face ! not able to find a plane on that face !");
+ double vec[3]={0.,0.,0.};
+ std::size_t j=0;
+ bool refFound=false;
+ for(;j<nbPoints-1 && !refFound;j++)
+ {
+ vec[0]=coords[3*begin[j+1]]-coords[3*begin[j]];
+ vec[1]=coords[3*begin[j+1]+1]-coords[3*begin[j]+1];
+ vec[2]=coords[3*begin[j+1]+2]-coords[3*begin[j]+2];
+ double norm=sqrt(vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2]);
+ if(norm>eps)
+ {
+ refFound=true;
+ vec[0]/=norm; vec[1]/=norm; vec[2]/=norm;
+ }
+ }
+ for(std::size_t i=j;i<nbPoints-1;i++)
+ {
+ double curVec[3];
+ curVec[0]=coords[3*begin[i+1]]-coords[3*begin[i]];
+ curVec[1]=coords[3*begin[i+1]+1]-coords[3*begin[i]+1];
+ curVec[2]=coords[3*begin[i+1]+2]-coords[3*begin[i]+2];
+ double norm=sqrt(curVec[0]*curVec[0]+curVec[1]*curVec[1]+curVec[2]*curVec[2]);
+ if(norm<eps)
+ continue;
+ curVec[0]/=norm; curVec[1]/=norm; curVec[2]/=norm;
+ v[0]=vec[1]*curVec[2]-vec[2]*curVec[1]; v[1]=vec[2]*curVec[0]-vec[0]*curVec[2]; v[2]=vec[0]*curVec[1]-vec[1]*curVec[0];
+ norm=sqrt(v[0]*v[0]+v[1]*v[1]+v[2]*v[2]);
+ if(norm>eps)
+ {
+ v[0]/=norm; v[1]/=norm; v[2]/=norm;
+ *p=v[0]*coords[3*begin[i]]+v[1]*coords[3*begin[i]+1]+v[2]*coords[3*begin[i]+2];
+ return ;
+ }
+ }
+ throw INTERP_KERNEL::Exception("Not able to find a normal vector of that 3D face !");
+}
+
+/*!
+ * This method tries to obtain a well oriented polyhedron.
+ * If the algorithm fails, an exception will be thrown.
+ */
+void MEDCouplingUMesh::TryToCorrectPolyhedronOrientation(int *begin, int *end, const double *coords)
+{
+ std::list< std::pair<int,int> > edgesOK,edgesFinished;
+ std::size_t nbOfFaces=std::count(begin,end,-1)+1;
+ std::vector<bool> isPerm(nbOfFaces,false);//field on faces False: I don't know, True : oriented
+ isPerm[0]=true;
+ int *bgFace=begin,*endFace=std::find(begin+1,end,-1);
+ std::size_t nbOfEdgesInFace=std::distance(bgFace,endFace);
+ for(std::size_t l=0;l<nbOfEdgesInFace;l++) { std::pair<int,int> p1(bgFace[l],bgFace[(l+1)%nbOfEdgesInFace]); edgesOK.push_back(p1); }
+ //
+ while(std::find(isPerm.begin(),isPerm.end(),false)!=isPerm.end())
+ {
+ bgFace=begin;
+ std::size_t smthChanged=0;
+ for(std::size_t i=0;i<nbOfFaces;i++)
+ {
+ endFace=std::find(bgFace+1,end,-1);
+ nbOfEdgesInFace=std::distance(bgFace,endFace);
+ if(!isPerm[i])
+ {
+ bool b;
+ for(std::size_t j=0;j<nbOfEdgesInFace;j++)
+ {
+ std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
+ std::pair<int,int> p2(p1.second,p1.first);
+ bool b1=std::find(edgesOK.begin(),edgesOK.end(),p1)!=edgesOK.end();
+ bool b2=std::find(edgesOK.begin(),edgesOK.end(),p2)!=edgesOK.end();
+ if(b1 || b2) { b=b2; isPerm[i]=true; smthChanged++; break; }
+ }
+ if(isPerm[i])
+ {
+ if(!b)
+ std::reverse(bgFace+1,endFace);
+ for(std::size_t j=0;j<nbOfEdgesInFace;j++)
+ {
+ std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
+ std::pair<int,int> p2(p1.second,p1.first);
+ if(std::find(edgesOK.begin(),edgesOK.end(),p1)!=edgesOK.end())
+ { std::ostringstream oss; oss << "Face #" << j << " of polyhedron looks bad !"; throw INTERP_KERNEL::Exception(oss.str().c_str()); }
+ if(std::find(edgesFinished.begin(),edgesFinished.end(),p1)!=edgesFinished.end() || std::find(edgesFinished.begin(),edgesFinished.end(),p2)!=edgesFinished.end())
+ { std::ostringstream oss; oss << "Face #" << j << " of polyhedron looks bad !"; throw INTERP_KERNEL::Exception(oss.str().c_str()); }
+ std::list< std::pair<int,int> >::iterator it=std::find(edgesOK.begin(),edgesOK.end(),p2);
+ if(it!=edgesOK.end())
+ {
+ edgesOK.erase(it);
+ edgesFinished.push_back(p1);
+ }
+ else
+ edgesOK.push_back(p1);
+ }
+ }
+ }
+ bgFace=endFace+1;
+ }
+ if(smthChanged==0)
+ { throw INTERP_KERNEL::Exception("The polyhedron looks too bad to be repaired !"); }
+ }
+ if(!edgesOK.empty())
+ { throw INTERP_KERNEL::Exception("The polyhedron looks too bad to be repaired : Some edges are shared only once !"); }
+ if(INTERP_KERNEL::calculateVolumeForPolyh2<int,INTERP_KERNEL::ALL_C_MODE>(begin,(int)std::distance(begin,end),coords)<-EPS_FOR_POLYH_ORIENTATION)
+ {//not lucky ! The first face was not correctly oriented : reorient all faces...
+ bgFace=begin;
+ for(std::size_t i=0;i<nbOfFaces;i++)
+ {
+ endFace=std::find(bgFace+1,end,-1);
+ std::reverse(bgFace+1,endFace);
+ bgFace=endFace+1;
+ }
+ }
+}
+
+DataArrayInt *MEDCouplingUMesh::buildUnionOf2DMeshLinear(const MEDCouplingUMesh *skin, const DataArrayInt *n2o) const
+{
+ int nbOfNodesExpected(skin->getNumberOfNodes());
+ const int *n2oPtr(n2o->getConstPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revNodal(DataArrayInt::New()),revNodalI(DataArrayInt::New());
+ skin->getReverseNodalConnectivity(revNodal,revNodalI);
+ const int *revNodalPtr(revNodal->getConstPointer()),*revNodalIPtr(revNodalI->getConstPointer());
+ const int *nodalPtr(skin->getNodalConnectivity()->getConstPointer());
+ const int *nodalIPtr(skin->getNodalConnectivityIndex()->getConstPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(nbOfNodesExpected+1,1);
+ int *work(ret->getPointer()); *work++=INTERP_KERNEL::NORM_POLYGON;
+ if(nbOfNodesExpected<1)
+ return ret.retn();
+ int prevCell(0),prevNode(nodalPtr[nodalIPtr[0]+1]);
+ *work++=n2oPtr[prevNode];
+ for(int i=1;i<nbOfNodesExpected;i++)
+ {
+ if(nodalIPtr[prevCell+1]-nodalIPtr[prevCell]==3)
+ {
+ std::set<int> conn(nodalPtr+nodalIPtr[prevCell]+1,nodalPtr+nodalIPtr[prevCell]+3);
+ conn.erase(prevNode);
+ if(conn.size()==1)
+ {
+ int curNode(*(conn.begin()));
+ *work++=n2oPtr[curNode];
+ std::set<int> shar(revNodalPtr+revNodalIPtr[curNode],revNodalPtr+revNodalIPtr[curNode+1]);
+ shar.erase(prevCell);
+ if(shar.size()==1)
+ {
+ prevCell=*(shar.begin());
+ prevNode=curNode;
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMeshLinear : presence of unexpected 2 !");
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMeshLinear : presence of unexpected 1 !");
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMeshLinear : presence of unexpected cell !");
+ }
+ return ret.retn();
+}
+
+DataArrayInt *MEDCouplingUMesh::buildUnionOf2DMeshQuadratic(const MEDCouplingUMesh *skin, const DataArrayInt *n2o) const
+{
+ int nbOfNodesExpected(skin->getNumberOfNodes());
+ int nbOfTurn(nbOfNodesExpected/2);
+ const int *n2oPtr(n2o->getConstPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> revNodal(DataArrayInt::New()),revNodalI(DataArrayInt::New());
+ skin->getReverseNodalConnectivity(revNodal,revNodalI);
+ const int *revNodalPtr(revNodal->getConstPointer()),*revNodalIPtr(revNodalI->getConstPointer());
+ const int *nodalPtr(skin->getNodalConnectivity()->getConstPointer());
+ const int *nodalIPtr(skin->getNodalConnectivityIndex()->getConstPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(nbOfNodesExpected+1,1);
+ int *work(ret->getPointer()); *work++=INTERP_KERNEL::NORM_QPOLYG;
+ if(nbOfNodesExpected<1)
+ return ret.retn();
+ int prevCell(0),prevNode(nodalPtr[nodalIPtr[0]+1]);
+ *work=n2oPtr[prevNode]; work[nbOfTurn]=n2oPtr[nodalPtr[nodalIPtr[0]+3]]; work++;
+ for(int i=1;i<nbOfTurn;i++)
+ {
+ if(nodalIPtr[prevCell+1]-nodalIPtr[prevCell]==4)
+ {
+ std::set<int> conn(nodalPtr+nodalIPtr[prevCell]+1,nodalPtr+nodalIPtr[prevCell]+3);
+ conn.erase(prevNode);
+ if(conn.size()==1)
+ {
+ int curNode(*(conn.begin()));
+ *work=n2oPtr[curNode];
+ std::set<int> shar(revNodalPtr+revNodalIPtr[curNode],revNodalPtr+revNodalIPtr[curNode+1]);
+ shar.erase(prevCell);
+ if(shar.size()==1)
+ {
+ int curCell(*(shar.begin()));
+ work[nbOfTurn]=n2oPtr[nodalPtr[nodalIPtr[curCell]+3]];
+ prevCell=curCell;
+ prevNode=curNode;
+ work++;
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMeshQuadratic : presence of unexpected 2 !");
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMeshQuadratic : presence of unexpected 1 !");
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMeshQuadratic : presence of unexpected cell !");
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method makes the assumption spacedimension == meshdimension == 2.
+ * This method works only for linear cells.
+ *
+ * \return a newly allocated array containing the connectivity of a polygon type enum included (NORM_POLYGON in pos#0)
+ */
+DataArrayInt *MEDCouplingUMesh::buildUnionOf2DMesh() const
+{
+ if(getMeshDimension()!=2 || getSpaceDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMesh : meshdimension, spacedimension must be equal to 2 !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> skin(computeSkin());
+ int oldNbOfNodes(skin->getNumberOfNodes());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> o2n(skin->zipCoordsTraducer());
+ int nbOfNodesExpected(skin->getNumberOfNodes());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> n2o(o2n->invertArrayO2N2N2O(oldNbOfNodes));
+ int nbCells(skin->getNumberOfCells());
+ if(nbCells==nbOfNodesExpected)
+ return buildUnionOf2DMeshLinear(skin,n2o);
+ else if(2*nbCells==nbOfNodesExpected)
+ return buildUnionOf2DMeshQuadratic(skin,n2o);
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMesh : the mesh 2D in input appears to be not in a single part of a 2D mesh !");
+}
+
+/*!
+ * This method makes the assumption spacedimension == meshdimension == 3.
+ * This method works only for linear cells.
+ *
+ * \return a newly allocated array containing the connectivity of a polygon type enum included (NORM_POLYHED in pos#0)
+ */
+DataArrayInt *MEDCouplingUMesh::buildUnionOf3DMesh() const
+{
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf3DMesh : meshdimension, spacedimension must be equal to 2 !");
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> m=computeSkin();
+ const int *conn=m->getNodalConnectivity()->getConstPointer();
+ const int *connI=m->getNodalConnectivityIndex()->getConstPointer();
+ int nbOfCells=m->getNumberOfCells();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(m->getNodalConnectivity()->getNumberOfTuples(),1);
+ int *work=ret->getPointer(); *work++=INTERP_KERNEL::NORM_POLYHED;
+ if(nbOfCells<1)
+ return ret.retn();
+ work=std::copy(conn+connI[0]+1,conn+connI[1],work);
+ for(int i=1;i<nbOfCells;i++)
+ {
+ *work++=-1;
+ work=std::copy(conn+connI[i]+1,conn+connI[i+1],work);
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method put in zip format into parameter 'zipFrmt' in full interlace mode.
+ * This format is often asked by INTERP_KERNEL algorithms to avoid many indirections into coordinates array.
+ */
+void MEDCouplingUMesh::FillInCompact3DMode(int spaceDim, int nbOfNodesInCell, const int *conn, const double *coo, double *zipFrmt)
+{
+ double *w=zipFrmt;
+ if(spaceDim==3)
+ for(int i=0;i<nbOfNodesInCell;i++)
+ w=std::copy(coo+3*conn[i],coo+3*conn[i]+3,w);
+ else if(spaceDim==2)
+ {
+ for(int i=0;i<nbOfNodesInCell;i++)
+ {
+ w=std::copy(coo+2*conn[i],coo+2*conn[i]+2,w);
+ *w++=0.;
+ }
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::FillInCompact3DMode : Invalid spaceDim specified : must be 2 or 3 !");
+}
+
+void MEDCouplingUMesh::writeVTKLL(std::ostream& ofs, const std::string& cellData, const std::string& pointData, DataArrayByte *byteData) const
+{
+ int nbOfCells=getNumberOfCells();
+ if(nbOfCells<=0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::writeVTK : the unstructured mesh has no cells !");
+ static const int PARAMEDMEM2VTKTYPETRADUCER[INTERP_KERNEL::NORM_MAXTYPE+1]={1,3,21,5,9,7,22,34,23,28,-1,-1,-1,-1,10,14,13,-1,12,-1,24,-1,16,27,-1,26,-1,29,-1,-1,25,42,36,4};
+ ofs << " <" << getVTKDataSetType() << ">\n";
+ ofs << " <Piece NumberOfPoints=\"" << getNumberOfNodes() << "\" NumberOfCells=\"" << nbOfCells << "\">\n";
+ ofs << " <PointData>\n" << pointData << std::endl;
+ ofs << " </PointData>\n";
+ ofs << " <CellData>\n" << cellData << std::endl;
+ ofs << " </CellData>\n";
+ ofs << " <Points>\n";
+ if(getSpaceDimension()==3)
+ _coords->writeVTK(ofs,8,"Points",byteData);
+ else
+ {
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coo=_coords->changeNbOfComponents(3,0.);
+ coo->writeVTK(ofs,8,"Points",byteData);
+ }
+ ofs << " </Points>\n";
+ ofs << " <Cells>\n";
+ const int *cPtr=_nodal_connec->getConstPointer();
+ const int *cIPtr=_nodal_connec_index->getConstPointer();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> faceoffsets=DataArrayInt::New(); faceoffsets->alloc(nbOfCells,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> types=DataArrayInt::New(); types->alloc(nbOfCells,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> offsets=DataArrayInt::New(); offsets->alloc(nbOfCells,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> connectivity=DataArrayInt::New(); connectivity->alloc(_nodal_connec->getNumberOfTuples()-nbOfCells,1);
+ int *w1=faceoffsets->getPointer(),*w2=types->getPointer(),*w3=offsets->getPointer(),*w4=connectivity->getPointer();
+ int szFaceOffsets=0,szConn=0;
+ for(int i=0;i<nbOfCells;i++,w1++,w2++,w3++)
+ {
+ *w2=cPtr[cIPtr[i]];
+ if((INTERP_KERNEL::NormalizedCellType)cPtr[cIPtr[i]]!=INTERP_KERNEL::NORM_POLYHED)
+ {
+ *w1=-1;
+ *w3=szConn+cIPtr[i+1]-cIPtr[i]-1; szConn+=cIPtr[i+1]-cIPtr[i]-1;
+ w4=std::copy(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1],w4);
+ }
+ else
+ {
+ int deltaFaceOffset=cIPtr[i+1]-cIPtr[i]+1;
+ *w1=szFaceOffsets+deltaFaceOffset; szFaceOffsets+=deltaFaceOffset;
+ std::set<int> c(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1]); c.erase(-1);
+ *w3=szConn+(int)c.size(); szConn+=(int)c.size();
+ w4=std::copy(c.begin(),c.end(),w4);
+ }
+ }
+ types->transformWithIndArr(PARAMEDMEM2VTKTYPETRADUCER,PARAMEDMEM2VTKTYPETRADUCER+INTERP_KERNEL::NORM_MAXTYPE);
+ types->writeVTK(ofs,8,"UInt8","types",byteData);
+ offsets->writeVTK(ofs,8,"Int32","offsets",byteData);
+ if(szFaceOffsets!=0)
+ {//presence of Polyhedra
+ connectivity->reAlloc(szConn);
+ faceoffsets->writeVTK(ofs,8,"Int32","faceoffsets",byteData);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> faces=DataArrayInt::New(); faces->alloc(szFaceOffsets,1);
+ w1=faces->getPointer();
+ for(int i=0;i<nbOfCells;i++)
+ if((INTERP_KERNEL::NormalizedCellType)cPtr[cIPtr[i]]==INTERP_KERNEL::NORM_POLYHED)
+ {
+ int nbFaces=std::count(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1],-1)+1;
+ *w1++=nbFaces;
+ const int *w6=cPtr+cIPtr[i]+1,*w5=0;
+ for(int j=0;j<nbFaces;j++)
+ {
+ w5=std::find(w6,cPtr+cIPtr[i+1],-1);
+ *w1++=(int)std::distance(w6,w5);
+ w1=std::copy(w6,w5,w1);
+ w6=w5+1;
+ }
+ }
+ faces->writeVTK(ofs,8,"Int32","faces",byteData);
+ }
+ connectivity->writeVTK(ofs,8,"Int32","connectivity",byteData);
+ ofs << " </Cells>\n";
+ ofs << " </Piece>\n";
+ ofs << " </" << getVTKDataSetType() << ">\n";
+}
+
+void MEDCouplingUMesh::reprQuickOverview(std::ostream& stream) const
+{
+ stream << "MEDCouplingUMesh C++ instance at " << this << ". Name : \"" << getName() << "\".";
+ if(_mesh_dim==-2)
+ { stream << " Not set !"; return ; }
+ stream << " Mesh dimension : " << _mesh_dim << ".";
+ if(_mesh_dim==-1)
+ return ;
+ if(!_coords)
+ { stream << " No coordinates set !"; return ; }
+ if(!_coords->isAllocated())
+ { stream << " Coordinates set but not allocated !"; return ; }
+ stream << " Space dimension : " << _coords->getNumberOfComponents() << "." << std::endl;
+ stream << "Number of nodes : " << _coords->getNumberOfTuples() << ".";
+ if(!_nodal_connec_index)
+ { stream << std::endl << "Nodal connectivity NOT set !"; return ; }
+ if(!_nodal_connec_index->isAllocated())
+ { stream << std::endl << "Nodal connectivity set but not allocated !"; return ; }
+ int lgth=_nodal_connec_index->getNumberOfTuples();
+ int cpt=_nodal_connec_index->getNumberOfComponents();
+ if(cpt!=1 || lgth<1)
+ return ;
+ stream << std::endl << "Number of cells : " << lgth-1 << ".";
+}
+
+std::string MEDCouplingUMesh::getVTKDataSetType() const
+{
+ return std::string("UnstructuredGrid");
+}
+
+/*!
+ * Partitions the first given 2D mesh using the second given 2D mesh as a tool, and
+ * returns a result mesh constituted by polygons.
+ * Thus the final result contains all nodes from m1 plus new nodes. However it doesn't necessarily contains
+ * all nodes from m2.
+ * The meshes should be in 2D space. In
+ * addition, returns two arrays mapping cells of the result mesh to cells of the input
+ * meshes.
+ * \param [in] m1 - the first input mesh which is a partitioned object.
+ * \param [in] m2 - the second input mesh which is a partition tool.
+ * \param [in] eps - precision used to detect coincident mesh entities.
+ * \param [out] cellNb1 - a new instance of DataArrayInt holding for each result
+ * cell an id of the cell of \a m1 it comes from. The caller is to delete
+ * this array using decrRef() as it is no more needed.
+ * \param [out] cellNb2 - a new instance of DataArrayInt holding for each result
+ * cell an id of the cell of \a m2 it comes from. -1 value means that a
+ * result cell comes from a cell (or part of cell) of \a m1 not overlapped by
+ * any cell of \a m2. The caller is to delete this array using decrRef() as
+ * it is no more needed.
+ * \return MEDCouplingUMesh * - the result 2D mesh which is a new instance of
+ * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
+ * is no more needed.
+ * \throw If the coordinates array is not set in any of the meshes.
+ * \throw If the nodal connectivity of cells is not defined in any of the meshes.
+ * \throw If any of the meshes is not a 2D mesh in 2D space.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::Intersect2DMeshes(const MEDCouplingUMesh *m1, const MEDCouplingUMesh *m2,
+ double eps, DataArrayInt *&cellNb1, DataArrayInt *&cellNb2)
+{
+ m1->checkFullyDefined();
+ m2->checkFullyDefined();
+ if(m1->getMeshDimension()!=2 || m1->getSpaceDimension()!=2 || m2->getMeshDimension()!=2 || m2->getSpaceDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Intersect2DMeshes works on umeshes m1 AND m2 with meshdim equal to 2 and spaceDim equal to 2 too!");
+
+ // Step 1: compute all edge intersections (new nodes)
+ std::vector< std::vector<int> > intersectEdge1, colinear2, subDiv2;
+ MEDCouplingUMesh *m1Desc=0,*m2Desc=0; // descending connec. meshes
+ DataArrayInt *desc1=0,*descIndx1=0,*revDesc1=0,*revDescIndx1=0,*desc2=0,*descIndx2=0,*revDesc2=0,*revDescIndx2=0;
+ std::vector<double> addCoo,addCoordsQuadratic; // coordinates of newly created nodes
+ INTERP_KERNEL::QUADRATIC_PLANAR::_precision=eps;
+ INTERP_KERNEL::QUADRATIC_PLANAR::_arc_detection_precision=eps;
+ IntersectDescending2DMeshes(m1,m2,eps,intersectEdge1,colinear2, subDiv2,
+ m1Desc,desc1,descIndx1,revDesc1,revDescIndx1,
+ addCoo, m2Desc,desc2,descIndx2,revDesc2,revDescIndx2);
+ revDesc1->decrRef(); revDescIndx1->decrRef(); revDesc2->decrRef(); revDescIndx2->decrRef();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> dd1(desc1),dd2(descIndx1),dd3(desc2),dd4(descIndx2);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> dd5(m1Desc),dd6(m2Desc);
+
+ // Step 2: re-order newly created nodes according to the ordering found in m2
+ std::vector< std::vector<int> > intersectEdge2;
+ BuildIntersectEdges(m1Desc,m2Desc,addCoo,subDiv2,intersectEdge2);
+ subDiv2.clear(); dd5=0; dd6=0;
+
+ // Step 3:
+ std::vector<int> cr,crI; //no DataArrayInt because interface with Geometric2D
+ std::vector<int> cNb1,cNb2; //no DataArrayInt because interface with Geometric2D
+ BuildIntersecting2DCellsFromEdges(eps,m1,desc1->getConstPointer(),descIndx1->getConstPointer(),intersectEdge1,colinear2,m2,desc2->getConstPointer(),descIndx2->getConstPointer(),intersectEdge2,addCoo,
+ /* outputs -> */addCoordsQuadratic,cr,crI,cNb1,cNb2);
+
+ // Step 4: Prepare final result:
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> addCooDa=DataArrayDouble::New();
+ addCooDa->alloc((int)(addCoo.size())/2,2);
+ std::copy(addCoo.begin(),addCoo.end(),addCooDa->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> addCoordsQuadraticDa=DataArrayDouble::New();
+ addCoordsQuadraticDa->alloc((int)(addCoordsQuadratic.size())/2,2);
+ std::copy(addCoordsQuadratic.begin(),addCoordsQuadratic.end(),addCoordsQuadraticDa->getPointer());
+ std::vector<const DataArrayDouble *> coordss(4);
+ coordss[0]=m1->getCoords(); coordss[1]=m2->getCoords(); coordss[2]=addCooDa; coordss[3]=addCoordsQuadraticDa;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coo=DataArrayDouble::Aggregate(coordss);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New("Intersect2D",2);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> conn=DataArrayInt::New(); conn->alloc((int)cr.size(),1); std::copy(cr.begin(),cr.end(),conn->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> connI=DataArrayInt::New(); connI->alloc((int)crI.size(),1); std::copy(crI.begin(),crI.end(),connI->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c1=DataArrayInt::New(); c1->alloc((int)cNb1.size(),1); std::copy(cNb1.begin(),cNb1.end(),c1->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c2=DataArrayInt::New(); c2->alloc((int)cNb2.size(),1); std::copy(cNb2.begin(),cNb2.end(),c2->getPointer());
+ ret->setConnectivity(conn,connI,true);
+ ret->setCoords(coo);
+ cellNb1=c1.retn(); cellNb2=c2.retn();
+ return ret.retn();
+}
+
+
+/**
+ * Private. Third step of the partitioning algorithm (Intersect2DMeshes): reconstruct full 2D cells from the
+ * (newly created) nodes corresponding to the edge intersections.
+ * Output params:
+ * @param[out] cr, crI connectivity of the resulting mesh
+ * @param[out] cNb1, cNb2 correspondance arrays giving for the merged mesh the initial cells IDs in m1 / m2
+ * TODO: describe input parameters
+ */
+void MEDCouplingUMesh::BuildIntersecting2DCellsFromEdges(double eps, const MEDCouplingUMesh *m1, const int *desc1, const int *descIndx1,
+ const std::vector<std::vector<int> >& intesctEdges1, const std::vector< std::vector<int> >& colinear2,
+ const MEDCouplingUMesh *m2, const int *desc2, const int *descIndx2, const std::vector<std::vector<int> >& intesctEdges2,
+ const std::vector<double>& addCoords,
+ std::vector<double>& addCoordsQuadratic, std::vector<int>& cr, std::vector<int>& crI, std::vector<int>& cNb1, std::vector<int>& cNb2)
+{
+ static const int SPACEDIM=2;
+ const double *coo1=m1->getCoords()->getConstPointer();
+ const int *conn1=m1->getNodalConnectivity()->getConstPointer();
+ const int *connI1=m1->getNodalConnectivityIndex()->getConstPointer();
+ int offset1=m1->getNumberOfNodes();
+ const double *coo2=m2->getCoords()->getConstPointer();
+ const int *conn2=m2->getNodalConnectivity()->getConstPointer();
+ const int *connI2=m2->getNodalConnectivityIndex()->getConstPointer();
+ int offset2=offset1+m2->getNumberOfNodes();
+ int offset3=offset2+((int)addCoords.size())/2;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> bbox1Arr(m1->getBoundingBoxForBBTree()),bbox2Arr(m2->getBoundingBoxForBBTree());
+ const double *bbox1(bbox1Arr->begin()),*bbox2(bbox2Arr->begin());
+ // Here a BBTree on 2D-cells, not on segments:
+ BBTree<SPACEDIM,int> myTree(bbox2,0,0,m2->getNumberOfCells(),eps);
+ int ncell1=m1->getNumberOfCells();
+ crI.push_back(0);
+ for(int i=0;i<ncell1;i++)
+ {
+ std::vector<int> candidates2;
+ myTree.getIntersectingElems(bbox1+i*2*SPACEDIM,candidates2);
+ std::map<INTERP_KERNEL::Node *,int> mapp;
+ std::map<int,INTERP_KERNEL::Node *> mappRev;
+ INTERP_KERNEL::QuadraticPolygon pol1;
+ INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)conn1[connI1[i]];
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
+ // Populate mapp and mappRev with nodes from the current cell (i) from mesh1 - this also builds the Node* objects:
+ MEDCouplingUMeshBuildQPFromMesh3(coo1,offset1,coo2,offset2,addCoords,desc1+descIndx1[i],desc1+descIndx1[i+1],intesctEdges1,/* output */mapp,mappRev);
+ // pol1 is the full cell from mesh2, in QP format, with all the additional intersecting nodes.
+ pol1.buildFromCrudeDataArray(mappRev,cm.isQuadratic(),conn1+connI1[i]+1,coo1,
+ desc1+descIndx1[i],desc1+descIndx1[i+1],intesctEdges1);
+ //
+ std::set<INTERP_KERNEL::Edge *> edges1;// store all edges of pol1 that are NOT consumed by intersect cells. If any after iteration over candidates2 -> a part of pol1 should appear in result
+ std::set<INTERP_KERNEL::Edge *> edgesBoundary2;// store all edges that are on boundary of (pol2 intersect pol1) minus edges on pol1.
+ INTERP_KERNEL::IteratorOnComposedEdge it1(&pol1);
+ for(it1.first();!it1.finished();it1.next())
+ edges1.insert(it1.current()->getPtr());
+ //
+ std::map<int,std::vector<INTERP_KERNEL::ElementaryEdge *> > edgesIn2ForShare; // common edges
+ std::vector<INTERP_KERNEL::QuadraticPolygon> pol2s(candidates2.size());
+ int ii=0;
+ for(std::vector<int>::const_iterator it2=candidates2.begin();it2!=candidates2.end();it2++,ii++)
+ {
+ INTERP_KERNEL::NormalizedCellType typ2=(INTERP_KERNEL::NormalizedCellType)conn2[connI2[*it2]];
+ const INTERP_KERNEL::CellModel& cm2=INTERP_KERNEL::CellModel::GetCellModel(typ2);
+ // Complete mapping with elements coming from the current cell it2 in mesh2:
+ MEDCouplingUMeshBuildQPFromMesh3(coo1,offset1,coo2,offset2,addCoords,desc2+descIndx2[*it2],desc2+descIndx2[*it2+1],intesctEdges2,/* output */mapp,mappRev);
+ // pol2 is the new QP in the final merged result.
+ pol2s[ii].buildFromCrudeDataArray2(mappRev,cm2.isQuadratic(),conn2+connI2[*it2]+1,coo2,desc2+descIndx2[*it2],desc2+descIndx2[*it2+1],intesctEdges2,
+ pol1,desc1+descIndx1[i],desc1+descIndx1[i+1],intesctEdges1,colinear2, /* output */ edgesIn2ForShare);
+ }
+ ii=0;
+ for(std::vector<int>::const_iterator it2=candidates2.begin();it2!=candidates2.end();it2++,ii++)
+ {
+ pol1.initLocationsWithOther(pol2s[ii]);
+ pol2s[ii].updateLocOfEdgeFromCrudeDataArray2(desc2+descIndx2[*it2],desc2+descIndx2[*it2+1],intesctEdges2,pol1,desc1+descIndx1[i],desc1+descIndx1[i+1],intesctEdges1,colinear2);
+ //MEDCouplingUMeshAssignOnLoc(pol1,pol2,desc1+descIndx1[i],desc1+descIndx1[i+1],intesctEdges1,desc2+descIndx2[*it2],desc2+descIndx2[*it2+1],intesctEdges2,colinear2);
+ pol1.buildPartitionsAbs(pol2s[ii],edges1,edgesBoundary2,mapp,i,*it2,offset3,addCoordsQuadratic,cr,crI,cNb1,cNb2);
+ }
+ // Deals with remaining (non-consumed) edges from m1: these are the edges that were never touched
+ // by m2 but that we still want to keep in the final result.
+ if(!edges1.empty())
+ {
+ try
+ {
+ INTERP_KERNEL::QuadraticPolygon::ComputeResidual(pol1,edges1,edgesBoundary2,mapp,offset3,i,addCoordsQuadratic,cr,crI,cNb1,cNb2);
+ }
+ catch(INTERP_KERNEL::Exception& e)
+ {
+ std::ostringstream oss; oss << "Error when computing residual of cell #" << i << " in source/m1 mesh ! Maybe the neighbours of this cell in mesh are not well connected !\n" << "The deep reason is the following : " << e.what();
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ for(std::map<int,INTERP_KERNEL::Node *>::const_iterator it=mappRev.begin();it!=mappRev.end();it++)
+ (*it).second->decrRef();
+ }
+}
+
+void IKGeo2DInternalMapper2(INTERP_KERNEL::Node *n, const std::map<INTERP_KERNEL::Node *,int>& m, int forbVal0, int forbVal1, std::vector<int>& isect)
+{
+ std::map<INTERP_KERNEL::Node *,int>::const_iterator it(m.find(n));
+ if(it==m.end())
+ throw INTERP_KERNEL::Exception("Internal error in remapping !");
+ int v((*it).second);
+ if(v==forbVal0 || v==forbVal1)
+ return ;
+ if(std::find(isect.begin(),isect.end(),v)==isect.end())
+ isect.push_back(v);
+}
+
+bool IKGeo2DInternalMapper(const INTERP_KERNEL::ComposedEdge& c, const std::map<INTERP_KERNEL::Node *,int>& m, int forbVal0, int forbVal1, std::vector<int>& isect)
+{
+ int sz(c.size());
+ if(sz<=1)
+ return false;
+ bool presenceOfOn(false);
+ for(int i=0;i<sz;i++)
+ {
+ INTERP_KERNEL::ElementaryEdge *e(c[i]);
+ if(e->getLoc()!=INTERP_KERNEL::FULL_ON_1)
+ continue ;
+ IKGeo2DInternalMapper2(e->getStartNode(),m,forbVal0,forbVal1,isect);
+ IKGeo2DInternalMapper2(e->getEndNode(),m,forbVal0,forbVal1,isect);
+ }
+ return presenceOfOn;
+}
+
+/**
+ * This method split some of edges of 2D cells in \a this. The edges to be split are specified in \a subNodesInSeg and in \a subNodesInSegI using index storage mode.
+ * To do the work this method can optionnaly needs information about middle of subedges for quadratic cases if a minimal creation of new nodes is wanted.
+ * So this method try to reduce at most the number of new nodes. The only case that can lead this method to add nodes if a SEG3 is split without information of middle.
+ * \b WARNING : is returned value is different from 0 a call to MEDCouplingUMesh::mergeNodes is necessary to avoid to have a non conform mesh.
+ *
+ * \return int - the number of new nodes created (in most of cases 0).
+ *
+ * \throw If \a this is not coherent.
+ * \throw If \a this has not spaceDim equal to 2.
+ * \throw If \a this has not meshDim equal to 2.
+ * \throw If some subcells needed to be split are orphan.
+ * \sa MEDCouplingUMesh::conformize2D
+ */
+int MEDCouplingUMesh::split2DCells(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *subNodesInSeg, const DataArrayInt *subNodesInSegI, const DataArrayInt *midOpt, const DataArrayInt *midOptI)
+{
+ if(!desc || !descI || !subNodesInSeg || !subNodesInSegI)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : the 4 first arrays must be not null !");
+ desc->checkAllocated(); descI->checkAllocated(); subNodesInSeg->checkAllocated(); subNodesInSegI->checkAllocated();
+ if(getSpaceDimension()!=2 || getMeshDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : This method only works for meshes with spaceDim=2 and meshDim=2 !");
+ if(midOpt==0 && midOptI==0)
+ {
+ split2DCellsLinear(desc,descI,subNodesInSeg,subNodesInSegI);
+ return 0;
+ }
+ else if(midOpt!=0 && midOptI!=0)
+ return split2DCellsQuadratic(desc,descI,subNodesInSeg,subNodesInSegI,midOpt,midOptI);
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : middle parameters must be set to null for all or not null for all.");
+}
+
+/*!
+ * \b WARNING this method is \b potentially \b non \b const (if returned array is empty).
+ * \b WARNING this method lead to have a non geometric type sorted mesh (for MED file users) !
+ * This method performs a conformization of \b this. So if a edge in \a this can be split into entire edges in \a this this method
+ * will suppress such edges to use sub edges in \a this. So this method does not add nodes in \a this if merged edges have same nature each other (Linear,Quadratic).
+ * Whatever the returned value, this method does not alter the order of cells in \a this neither the orientation of cells.
+ * The modified cells if any are systematically declared as NORM_POLYGON or NORM_QPOLYG depending on the
+ *
+ * This method expects that \b this has a meshDim equal 2 and spaceDim equal to 2 too.
+ * This method expects that all nodes in \a this are not closer than \a eps.
+ * If it is not the case you can invoke MEDCouplingUMesh::mergeNodes before calling this method.
+ *
+ * \param [in] eps the relative error to detect merged edges.
+ * \return DataArrayInt * - The list of cellIds in \a this that have been subdivided. If empty, nothing changed in \a this (as if it were a const method). The array is a newly allocated array
+ * that the user is expected to deal with.
+ *
+ * \throw If \a this is not coherent.
+ * \throw If \a this has not spaceDim equal to 2.
+ * \throw If \a this has not meshDim equal to 2.
+ * \sa MEDCouplingUMesh::mergeNodes, MEDCouplingUMesh::split2DCells
+ */
+DataArrayInt *MEDCouplingUMesh::conformize2D(double eps)
+{
+ static const int SPACEDIM=2;
+ checkCoherency();
+ if(getSpaceDimension()!=2 || getMeshDimension()!=2)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::conformize2D : This method only works for meshes with spaceDim=2 and meshDim=2 !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> desc1(DataArrayInt::New()),descIndx1(DataArrayInt::New()),revDesc1(DataArrayInt::New()),revDescIndx1(DataArrayInt::New());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> mDesc(buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1));
+ const int *c(mDesc->getNodalConnectivity()->getConstPointer()),*ci(mDesc->getNodalConnectivityIndex()->getConstPointer()),*rd(revDesc1->getConstPointer()),*rdi(revDescIndx1->getConstPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> bboxArr(mDesc->getBoundingBoxForBBTree());
+ const double *bbox(bboxArr->begin()),*coords(getCoords()->begin());
+ int nCell(getNumberOfCells()),nDescCell(mDesc->getNumberOfCells());
+ std::vector< std::vector<int> > intersectEdge(nDescCell),overlapEdge(nDescCell);
+ std::vector<double> addCoo;
+ BBTree<SPACEDIM,int> myTree(bbox,0,0,nDescCell,-eps);
+ INTERP_KERNEL::QUADRATIC_PLANAR::_precision=eps;
+ INTERP_KERNEL::QUADRATIC_PLANAR::_arc_detection_precision=eps;
+ for(int i=0;i<nDescCell;i++)
+ {
+ std::vector<int> candidates;
+ myTree.getIntersectingElems(bbox+i*2*SPACEDIM,candidates);
+ for(std::vector<int>::const_iterator it=candidates.begin();it!=candidates.end();it++)
+ if(*it>i)
+ {
+ std::map<INTERP_KERNEL::Node *,int> m;
+ INTERP_KERNEL::Edge *e1(MEDCouplingUMeshBuildQPFromEdge2((INTERP_KERNEL::NormalizedCellType)c[ci[i]],c+ci[i]+1,coords,m)),
+ *e2(MEDCouplingUMeshBuildQPFromEdge2((INTERP_KERNEL::NormalizedCellType)c[ci[*it]],c+ci[*it]+1,coords,m));
+ INTERP_KERNEL::MergePoints merge;
+ INTERP_KERNEL::QuadraticPolygon c1,c2;
+ e1->intersectWith(e2,merge,c1,c2);
+ e1->decrRef(); e2->decrRef();
+ if(IKGeo2DInternalMapper(c1,m,c[ci[i]+1],c[ci[i]+2],intersectEdge[i]))
+ overlapEdge[i].push_back(*it);
+ if(IKGeo2DInternalMapper(c2,m,c[ci[*it]+1],c[ci[*it]+2],intersectEdge[*it]))
+ overlapEdge[*it].push_back(i);
+ for(std::map<INTERP_KERNEL::Node *,int>::const_iterator it2=m.begin();it2!=m.end();it2++)
+ (*it2).first->decrRef();
+ }
+ }
+ // splitting done. sort intersect point in intersectEdge.
+ std::vector< std::vector<int> > middle(nDescCell);
+ int nbOf2DCellsToBeSplit(0);
+ bool middleNeedsToBeUsed(false);
+ std::vector<bool> cells2DToTreat(nDescCell,false);
+ for(int i=0;i<nDescCell;i++)
+ {
+ std::vector<int>& isect(intersectEdge[i]);
+ int sz((int)isect.size());
+ if(sz>1)
+ {
+ std::map<INTERP_KERNEL::Node *,int> m;
+ INTERP_KERNEL::Edge *e(MEDCouplingUMeshBuildQPFromEdge2((INTERP_KERNEL::NormalizedCellType)c[ci[i]],c+ci[i]+1,coords,m));
+ e->sortSubNodesAbs(coords,isect);
+ e->decrRef();
+ for(std::map<INTERP_KERNEL::Node *,int>::const_iterator it2=m.begin();it2!=m.end();it2++)
+ (*it2).first->decrRef();
+ }
+ if(sz!=0)
+ {
+ int idx0(rdi[i]),idx1(rdi[i+1]);
+ if(idx1-idx0!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::conformize2D : internal error #0 !");
+ if(!cells2DToTreat[rd[idx0]])
+ {
+ cells2DToTreat[rd[idx0]]=true;
+ nbOf2DCellsToBeSplit++;
+ }
+ // try to reuse at most eventual 'middle' of SEG3
+ std::vector<int>& mid(middle[i]);
+ mid.resize(sz+1,-1);
+ if((INTERP_KERNEL::NormalizedCellType)c[ci[i]]==INTERP_KERNEL::NORM_SEG3)
+ {
+ middleNeedsToBeUsed=true;
+ const std::vector<int>& candidates(overlapEdge[i]);
+ std::vector<int> trueCandidates;
+ for(std::vector<int>::const_iterator itc=candidates.begin();itc!=candidates.end();itc++)
+ if((INTERP_KERNEL::NormalizedCellType)c[ci[*itc]]==INTERP_KERNEL::NORM_SEG3)
+ trueCandidates.push_back(*itc);
+ int stNode(c[ci[i]+1]),endNode(isect[0]);
+ for(int j=0;j<sz+1;j++)
+ {
+ for(std::vector<int>::const_iterator itc=trueCandidates.begin();itc!=trueCandidates.end();itc++)
+ {
+ int tmpSt(c[ci[*itc]+1]),tmpEnd(c[ci[*itc]+2]);
+ if((tmpSt==stNode && tmpEnd==endNode) || (tmpSt==endNode && tmpEnd==stNode))
+ { mid[j]=*itc; break; }
+ }
+ stNode=endNode;
+ endNode=j<sz-1?isect[j+1]:c[ci[i]+2];
+ }
+ }
+ }
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret(DataArrayInt::New()),notRet(DataArrayInt::New()); ret->alloc(nbOf2DCellsToBeSplit,1);
+ if(nbOf2DCellsToBeSplit==0)
+ return ret.retn();
+ //
+ int *retPtr(ret->getPointer());
+ for(int i=0;i<nCell;i++)
+ if(cells2DToTreat[i])
+ *retPtr++=i;
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> mSafe,nSafe,oSafe,pSafe,qSafe,rSafe;
+ DataArrayInt *m(0),*n(0),*o(0),*p(0),*q(0),*r(0);
+ MEDCouplingUMesh::ExtractFromIndexedArrays(ret->begin(),ret->end(),desc1,descIndx1,m,n); mSafe=m; nSafe=n;
+ DataArrayInt::PutIntoToSkylineFrmt(intersectEdge,o,p); oSafe=o; pSafe=p;
+ if(middleNeedsToBeUsed)
+ { DataArrayInt::PutIntoToSkylineFrmt(middle,q,r); qSafe=q; rSafe=r; }
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> modif(static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(ret->begin(),ret->end(),true)));
+ int nbOfNodesCreated(modif->split2DCells(mSafe,nSafe,oSafe,pSafe,qSafe,rSafe));
+ setCoords(modif->getCoords());//if nbOfNodesCreated==0 modif and this have the same coordinates pointer so this line has no effect. But for quadratic cases this line is important.
+ setPartOfMySelf(ret->begin(),ret->end(),*modif);
+ {
+ bool areNodesMerged; int newNbOfNodes;
+ if(nbOfNodesCreated!=0)
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> tmp(mergeNodes(eps,areNodesMerged,newNbOfNodes));
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method is private and is the first step of Partition of 2D mesh (spaceDim==2 and meshDim==2).
+ * It builds the descending connectivity of the two meshes, and then using a binary tree
+ * it computes the edge intersections. This results in new points being created : they're stored in addCoo.
+ * Documentation about parameters colinear2 and subDiv2 can be found in method QuadraticPolygon::splitAbs().
+ */
+void MEDCouplingUMesh::IntersectDescending2DMeshes(const MEDCouplingUMesh *m1, const MEDCouplingUMesh *m2, double eps,
+ std::vector< std::vector<int> >& intersectEdge1, std::vector< std::vector<int> >& colinear2, std::vector< std::vector<int> >& subDiv2,
+ MEDCouplingUMesh *& m1Desc, DataArrayInt *&desc1, DataArrayInt *&descIndx1, DataArrayInt *&revDesc1, DataArrayInt *&revDescIndx1,
+ std::vector<double>& addCoo,
+ MEDCouplingUMesh *& m2Desc, DataArrayInt *&desc2, DataArrayInt *&descIndx2, DataArrayInt *&revDesc2, DataArrayInt *&revDescIndx2)
+ throw(INTERP_KERNEL::Exception)
+{
+ static const int SPACEDIM=2;
+ // Build desc connectivity
+ desc1=DataArrayInt::New(); descIndx1=DataArrayInt::New(); revDesc1=DataArrayInt::New(); revDescIndx1=DataArrayInt::New();
+ desc2=DataArrayInt::New();
+ descIndx2=DataArrayInt::New();
+ revDesc2=DataArrayInt::New();
+ revDescIndx2=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> dd1(desc1),dd2(descIndx1),dd3(revDesc1),dd4(revDescIndx1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> dd5(desc2),dd6(descIndx2),dd7(revDesc2),dd8(revDescIndx2);
+ m1Desc=m1->buildDescendingConnectivity2(desc1,descIndx1,revDesc1,revDescIndx1);
+ m2Desc=m2->buildDescendingConnectivity2(desc2,descIndx2,revDesc2,revDescIndx2);
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> dd9(m1Desc),dd10(m2Desc);
+ const int *c1=m1Desc->getNodalConnectivity()->getConstPointer();
+ const int *ci1=m1Desc->getNodalConnectivityIndex()->getConstPointer();
+
+ // Build BB tree of all edges in the tool mesh (second mesh)
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> bbox1Arr(m1Desc->getBoundingBoxForBBTree()),bbox2Arr(m2Desc->getBoundingBoxForBBTree());
+ const double *bbox1(bbox1Arr->begin()),*bbox2(bbox2Arr->begin());
+ int nDescCell1=m1Desc->getNumberOfCells();
+ int nDescCell2=m2Desc->getNumberOfCells();
+ intersectEdge1.resize(nDescCell1);
+ colinear2.resize(nDescCell2);
+ subDiv2.resize(nDescCell2);
+ BBTree<SPACEDIM,int> myTree(bbox2,0,0,m2Desc->getNumberOfCells(),-eps);
+
+ std::vector<int> candidates1(1);
+ int offset1=m1->getNumberOfNodes();
+ int offset2=offset1+m2->getNumberOfNodes();
+ for(int i=0;i<nDescCell1;i++) // for all edges in the first mesh
+ {
+ std::vector<int> candidates2; // edges of mesh2 candidate for intersection
+ myTree.getIntersectingElems(bbox1+i*2*SPACEDIM,candidates2);
+ if(!candidates2.empty()) // candidates2 holds edges from the second mesh potentially intersecting current edge i in mesh1
+ {
+ std::map<INTERP_KERNEL::Node *,int> map1,map2;
+ // pol2 is not necessarily a closed polygon: just a set of (quadratic) edges (same as candidates2) in the Geometric DS format
+ INTERP_KERNEL::QuadraticPolygon *pol2=MEDCouplingUMeshBuildQPFromMesh(m2Desc,candidates2,map2);
+ candidates1[0]=i;
+ INTERP_KERNEL::QuadraticPolygon *pol1=MEDCouplingUMeshBuildQPFromMesh(m1Desc,candidates1,map1);
+ // This following part is to avoid that some removed nodes (for example due to a merge between pol1 and pol2) are replaced by a newly created one
+ // This trick guarantees that Node * are discriminant (i.e. form a unique identifier)
+ std::set<INTERP_KERNEL::Node *> nodes;
+ pol1->getAllNodes(nodes); pol2->getAllNodes(nodes);
+ std::size_t szz(nodes.size());
+ std::vector< MEDCouplingAutoRefCountObjectPtr<INTERP_KERNEL::Node> > nodesSafe(szz);
+ std::set<INTERP_KERNEL::Node *>::const_iterator itt(nodes.begin());
+ for(std::size_t iii=0;iii<szz;iii++,itt++)
+ { (*itt)->incrRef(); nodesSafe[iii]=*itt; }
+ // end of protection
+ // Performs egde cutting:
+ pol1->splitAbs(*pol2,map1,map2,offset1,offset2,candidates2,intersectEdge1[i],i,colinear2,subDiv2,addCoo);
+ delete pol2;
+ delete pol1;
+ }
+ else
+ intersectEdge1[i].insert(intersectEdge1[i].end(),c1+ci1[i]+1,c1+ci1[i+1]);
+ }
+ m1Desc->incrRef(); desc1->incrRef(); descIndx1->incrRef(); revDesc1->incrRef(); revDescIndx1->incrRef();
+ m2Desc->incrRef(); desc2->incrRef(); descIndx2->incrRef(); revDesc2->incrRef(); revDescIndx2->incrRef();
+}
+
+/*!
+ * This method performs the 2nd step of Partition of 2D mesh.
+ * This method has 4 inputs :
+ * - a mesh 'm1' with meshDim==1 and a SpaceDim==2
+ * - a mesh 'm2' with meshDim==1 and a SpaceDim==2
+ * - subDiv of size 'm2->getNumberOfCells()' that lists for each seg cell in 'm' the splitting node ids randomly sorted.
+ * The aim of this method is to sort the splitting nodes, if any, and to put them in 'intersectEdge' output parameter based on edges of mesh 'm2'
+ * Nodes end up lying consecutively on a cutted edge.
+ * \param m1 is expected to be a mesh of meshDimension equal to 1 and spaceDim equal to 2. No check of that is performed by this method.
+ * (Only present for its coords in case of 'subDiv' shares some nodes of 'm1')
+ * \param m2 is expected to be a mesh of meshDimension equal to 1 and spaceDim equal to 2. No check of that is performed by this method.
+ * \param addCoo input parameter with additional nodes linked to intersection of the 2 meshes.
+ * \param[out] intersectEdge the same content as subDiv, but correclty oriented.
+ */
+void MEDCouplingUMesh::BuildIntersectEdges(const MEDCouplingUMesh *m1, const MEDCouplingUMesh *m2,
+ const std::vector<double>& addCoo,
+ const std::vector< std::vector<int> >& subDiv, std::vector< std::vector<int> >& intersectEdge)
+{
+ int offset1=m1->getNumberOfNodes();
+ int ncell=m2->getNumberOfCells();
+ const int *c=m2->getNodalConnectivity()->getConstPointer();
+ const int *cI=m2->getNodalConnectivityIndex()->getConstPointer();
+ const double *coo=m2->getCoords()->getConstPointer();
+ const double *cooBis=m1->getCoords()->getConstPointer();
+ int offset2=offset1+m2->getNumberOfNodes();
+ intersectEdge.resize(ncell);
+ for(int i=0;i<ncell;i++,cI++)
+ {
+ const std::vector<int>& divs=subDiv[i];
+ int nnode=cI[1]-cI[0]-1;
+ std::map<int, std::pair<INTERP_KERNEL::Node *,bool> > mapp2;
+ std::map<INTERP_KERNEL::Node *, int> mapp22;
+ for(int j=0;j<nnode;j++)
+ {
+ INTERP_KERNEL::Node *nn=new INTERP_KERNEL::Node(coo[2*c[(*cI)+j+1]],coo[2*c[(*cI)+j+1]+1]);
+ int nnid=c[(*cI)+j+1];
+ mapp2[nnid]=std::pair<INTERP_KERNEL::Node *,bool>(nn,true);
+ mapp22[nn]=nnid+offset1;
+ }
+ INTERP_KERNEL::Edge *e=MEDCouplingUMeshBuildQPFromEdge((INTERP_KERNEL::NormalizedCellType)c[*cI],mapp2,c+(*cI)+1);
+ for(std::map<int, std::pair<INTERP_KERNEL::Node *,bool> >::const_iterator it=mapp2.begin();it!=mapp2.end();it++)
+ ((*it).second.first)->decrRef();
+ std::vector<INTERP_KERNEL::Node *> addNodes(divs.size());
+ std::map<INTERP_KERNEL::Node *,int> mapp3;
+ for(std::size_t j=0;j<divs.size();j++)
+ {
+ int id=divs[j];
+ INTERP_KERNEL::Node *tmp=0;
+ if(id<offset1)
+ tmp=new INTERP_KERNEL::Node(cooBis[2*id],cooBis[2*id+1]);
+ else if(id<offset2)
+ tmp=new INTERP_KERNEL::Node(coo[2*(id-offset1)],coo[2*(id-offset1)+1]);//if it happens, bad news mesh 'm2' is non conform.
+ else
+ tmp=new INTERP_KERNEL::Node(addCoo[2*(id-offset2)],addCoo[2*(id-offset2)+1]);
+ addNodes[j]=tmp;
+ mapp3[tmp]=id;
+ }
+ e->sortIdsAbs(addNodes,mapp22,mapp3,intersectEdge[i]);
+ for(std::vector<INTERP_KERNEL::Node *>::const_iterator it=addNodes.begin();it!=addNodes.end();it++)
+ (*it)->decrRef();
+ e->decrRef();
+ }
+}
+
+/*!
+ * This method is part of the Slice3D algorithm. It is the first step of assembly process, ones coordinates have been computed (by MEDCouplingUMesh::split3DCurveWithPlane method).
+ * This method allows to compute given the status of 3D curve cells and the descending connectivity 3DSurf->3DCurve to deduce the intersection of each 3D surf cells
+ * with a plane. The result will be put in 'cut3DSuf' out parameter.
+ * \param [in] cut3DCurve input paramter that gives for each 3DCurve cell if it owns fully to the plane or partially.
+ * \param [out] nodesOnPlane, returns all the nodes that are on the plane.
+ * \param [in] nodal3DSurf is the nodal connectivity of 3D surf mesh.
+ * \param [in] nodalIndx3DSurf is the nodal connectivity index of 3D surf mesh.
+ * \param [in] nodal3DCurve is the nodal connectivity of 3D curve mesh.
+ * \param [in] nodal3DIndxCurve is the nodal connectivity index of 3D curve mesh.
+ * \param [in] desc is the descending connectivity 3DSurf->3DCurve
+ * \param [in] descIndx is the descending connectivity index 3DSurf->3DCurve
+ * \param [out] cut3DSuf input/output param.
+ */
+void MEDCouplingUMesh::AssemblyForSplitFrom3DCurve(const std::vector<int>& cut3DCurve, std::vector<int>& nodesOnPlane, const int *nodal3DSurf, const int *nodalIndx3DSurf,
+ const int *nodal3DCurve, const int *nodalIndx3DCurve,
+ const int *desc, const int *descIndx,
+ std::vector< std::pair<int,int> >& cut3DSurf) throw(INTERP_KERNEL::Exception)
+{
+ std::set<int> nodesOnP(nodesOnPlane.begin(),nodesOnPlane.end());
+ int nbOf3DSurfCell=(int)cut3DSurf.size();
+ for(int i=0;i<nbOf3DSurfCell;i++)
+ {
+ std::vector<int> res;
+ int offset=descIndx[i];
+ int nbOfSeg=descIndx[i+1]-offset;
+ for(int j=0;j<nbOfSeg;j++)
+ {
+ int edgeId=desc[offset+j];
+ int status=cut3DCurve[edgeId];
+ if(status!=-2)
+ {
+ if(status>-1)
+ res.push_back(status);
+ else
+ {
+ res.push_back(nodal3DCurve[nodalIndx3DCurve[edgeId]+1]);
+ res.push_back(nodal3DCurve[nodalIndx3DCurve[edgeId]+2]);
+ }
+ }
+ }
+ switch(res.size())
+ {
+ case 2:
+ {
+ cut3DSurf[i].first=res[0]; cut3DSurf[i].second=res[1];
+ break;
+ }
+ case 1:
+ case 0:
+ {
+ std::set<int> s1(nodal3DSurf+nodalIndx3DSurf[i]+1,nodal3DSurf+nodalIndx3DSurf[i+1]);
+ std::set_intersection(nodesOnP.begin(),nodesOnP.end(),s1.begin(),s1.end(),std::back_insert_iterator< std::vector<int> >(res));
+ if(res.size()==2)
+ {
+ cut3DSurf[i].first=res[0]; cut3DSurf[i].second=res[1];
+ }
+ else
+ {
+ cut3DSurf[i].first=-1; cut3DSurf[i].second=-1;
+ }
+ break;
+ }
+ default:
+ {// case when plane is on a multi colinear edge of a polyhedron
+ if((int)res.size()==2*nbOfSeg)
+ {
+ cut3DSurf[i].first=-2; cut3DSurf[i].second=i;
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AssemblyPointsFrom3DCurve : unexpected situation !");
+ }
+ }
+ }
+}
+
+/*!
+ * \a this is expected to be a mesh with spaceDim==3 and meshDim==3. If not an exception will be thrown.
+ * This method is part of the Slice3D algorithm. It is the second step of assembly process, ones coordinates have been computed (by MEDCouplingUMesh::split3DCurveWithPlane method).
+ * This method allows to compute given the result of 3D surf cells with plane and the descending connectivity 3D->3DSurf to deduce the intersection of each 3D cells
+ * with a plane. The result will be put in 'nodalRes' 'nodalResIndx' and 'cellIds' out parameters.
+ * \param cut3DSurf input paramter that gives for each 3DSurf its intersection with plane (result of MEDCouplingUMesh::AssemblyForSplitFrom3DCurve).
+ * \param desc is the descending connectivity 3D->3DSurf
+ * \param descIndx is the descending connectivity index 3D->3DSurf
+ */
+void MEDCouplingUMesh::assemblyForSplitFrom3DSurf(const std::vector< std::pair<int,int> >& cut3DSurf,
+ const int *desc, const int *descIndx,
+ DataArrayInt *nodalRes, DataArrayInt *nodalResIndx, DataArrayInt *cellIds) const throw(INTERP_KERNEL::Exception)
+{
+ checkFullyDefined();
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::assemblyForSplitFrom3DSurf works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
+ const int *nodal3D=_nodal_connec->getConstPointer();
+ const int *nodalIndx3D=_nodal_connec_index->getConstPointer();
+ int nbOfCells=getNumberOfCells();
+ for(int i=0;i<nbOfCells;i++)
+ {
+ std::map<int, std::set<int> > m;
+ int offset=descIndx[i];
+ int nbOfFaces=descIndx[i+1]-offset;
+ int start=-1;
+ int end=-1;
+ for(int j=0;j<nbOfFaces;j++)
+ {
+ const std::pair<int,int>& p=cut3DSurf[desc[offset+j]];
+ if(p.first!=-1 && p.second!=-1)
+ {
+ if(p.first!=-2)
+ {
+ start=p.first; end=p.second;
+ m[p.first].insert(p.second);
+ m[p.second].insert(p.first);
+ }
+ else
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)nodal3D[nodalIndx3D[i]]);
+ int sz=nodalIndx3D[i+1]-nodalIndx3D[i]-1;
+ INTERP_KERNEL::AutoPtr<int> tmp=new int[sz];
+ INTERP_KERNEL::NormalizedCellType cmsId;
+ unsigned nbOfNodesSon=cm.fillSonCellNodalConnectivity2(j,nodal3D+nodalIndx3D[i]+1,sz,tmp,cmsId);
+ start=tmp[0]; end=tmp[nbOfNodesSon-1];
+ for(unsigned k=0;k<nbOfNodesSon;k++)
+ {
+ m[tmp[k]].insert(tmp[(k+1)%nbOfNodesSon]);
+ m[tmp[(k+1)%nbOfNodesSon]].insert(tmp[k]);
+ }
+ }
+ }
+ }
+ if(m.empty())
+ continue;
+ std::vector<int> conn(1,(int)INTERP_KERNEL::NORM_POLYGON);
+ int prev=end;
+ while(end!=start)
+ {
+ std::map<int, std::set<int> >::const_iterator it=m.find(start);
+ const std::set<int>& s=(*it).second;
+ std::set<int> s2; s2.insert(prev);
+ std::set<int> s3;
+ std::set_difference(s.begin(),s.end(),s2.begin(),s2.end(),inserter(s3,s3.begin()));
+ if(s3.size()==1)
+ {
+ int val=*s3.begin();
+ conn.push_back(start);
+ prev=start;
+ start=val;
+ }
+ else
+ start=end;
+ }
+ conn.push_back(end);
+ if(conn.size()>3)
+ {
+ nodalRes->insertAtTheEnd(conn.begin(),conn.end());
+ nodalResIndx->pushBackSilent(nodalRes->getNumberOfTuples());
+ cellIds->pushBackSilent(i);
+ }
+ }
+}
+
+/*!
+ * This method compute the convex hull of a single 2D cell. This method tries to conserve at maximum the given input connectivity. In particular, if the orientation of cell is not clockwise
+ * as in MED format norm. If definitely the result of Jarvis algorithm is not matchable with the input connectivity, the result will be copied into \b nodalConnecOut parameter and
+ * the geometric cell type set to INTERP_KERNEL::NORM_POLYGON.
+ * This method excepts that \b coords parameter is expected to be in dimension 2. [ \b nodalConnBg , \b nodalConnEnd ) is the nodal connectivity of the input
+ * cell (geometric cell type included at the position 0). If the meshdimension of the input cell is not equal to 2 an INTERP_KERNEL::Exception will be thrown.
+ *
+ * \return false if the input connectivity represents already the convex hull, true if the input cell needs to be reordered.
+ */
+bool MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis(const double *coords, const int *nodalConnBg, const int *nodalConnEnd, DataArrayInt *nodalConnecOut)
+{
+ std::size_t sz=std::distance(nodalConnBg,nodalConnEnd);
+ if(sz>=4)
+ {
+ const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)*nodalConnBg);
+ if(cm.getDimension()==2)
+ {
+ const int *node=nodalConnBg+1;
+ int startNode=*node++;
+ double refX=coords[2*startNode];
+ for(;node!=nodalConnEnd;node++)
+ {
+ if(coords[2*(*node)]<refX)
+ {
+ startNode=*node;
+ refX=coords[2*startNode];
+ }
+ }
+ std::vector<int> tmpOut; tmpOut.reserve(sz); tmpOut.push_back(startNode);
+ refX=1e300;
+ double tmp1;
+ double tmp2[2];
+ double angle0=-M_PI/2;
+ //
+ int nextNode=-1;
+ int prevNode=-1;
+ double resRef;
+ double angleNext=0.;
+ while(nextNode!=startNode)
+ {
+ nextNode=-1;
+ resRef=1e300;
+ for(node=nodalConnBg+1;node!=nodalConnEnd;node++)
+ {
+ if(*node!=tmpOut.back() && *node!=prevNode)
+ {
+ tmp2[0]=coords[2*(*node)]-coords[2*tmpOut.back()]; tmp2[1]=coords[2*(*node)+1]-coords[2*tmpOut.back()+1];
+ double angleM=INTERP_KERNEL::EdgeArcCircle::GetAbsoluteAngle(tmp2,tmp1);
+ double res;
+ if(angleM<=angle0)
+ res=angle0-angleM;
+ else
+ res=angle0-angleM+2.*M_PI;
+ if(res<resRef)
+ {
+ nextNode=*node;
+ resRef=res;
+ angleNext=angleM;
+ }
+ }
+ }
+ if(nextNode!=startNode)
+ {
+ angle0=angleNext-M_PI;
+ if(angle0<-M_PI)
+ angle0+=2*M_PI;
+ prevNode=tmpOut.back();
+ tmpOut.push_back(nextNode);
+ }
+ }
+ std::vector<int> tmp3(2*(sz-1));
+ std::vector<int>::iterator it=std::copy(nodalConnBg+1,nodalConnEnd,tmp3.begin());
+ std::copy(nodalConnBg+1,nodalConnEnd,it);
+ if(std::search(tmp3.begin(),tmp3.end(),tmpOut.begin(),tmpOut.end())!=tmp3.end())
+ {
+ nodalConnecOut->insertAtTheEnd(nodalConnBg,nodalConnEnd);
+ return false;
+ }
+ if(std::search(tmp3.rbegin(),tmp3.rend(),tmpOut.begin(),tmpOut.end())!=tmp3.rend())
+ {
+ nodalConnecOut->insertAtTheEnd(nodalConnBg,nodalConnEnd);
+ return false;
+ }
+ else
+ {
+ nodalConnecOut->pushBackSilent((int)INTERP_KERNEL::NORM_POLYGON);
+ nodalConnecOut->insertAtTheEnd(tmpOut.begin(),tmpOut.end());
+ return true;
+ }
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis : invalid 2D cell connectivity !");
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis : invalid 2D cell connectivity !");
+}
+
+/*!
+ * This method works on an input pair (\b arr, \b arrIndx) where \b arr indexes is in \b arrIndx.
+ * This method will not impact the size of inout parameter \b arrIndx but the size of \b arr will be modified in case of suppression.
+ *
+ * \param [in] idsToRemoveBg begin of set of ids to remove in \b arr (included)
+ * \param [in] idsToRemoveEnd end of set of ids to remove in \b arr (excluded)
+ * \param [in,out] arr array in which the remove operation will be done.
+ * \param [in,out] arrIndx array in the remove operation will modify
+ * \param [in] offsetForRemoval (by default 0) offset so that for each i in [0,arrIndx->getNumberOfTuples()-1) removal process will be performed in the following range [arr+arrIndx[i]+offsetForRemoval,arr+arr[i+1])
+ * \return true if \b arr and \b arrIndx have been modified, false if not.
+ */
+bool MEDCouplingUMesh::RemoveIdsFromIndexedArrays(const int *idsToRemoveBg, const int *idsToRemoveEnd, DataArrayInt *arr, DataArrayInt *arrIndx, int offsetForRemoval)
+{
+ if(!arrIndx || !arr)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::RemoveIdsFromIndexedArrays : some input arrays are empty !");
+ if(offsetForRemoval<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::RemoveIdsFromIndexedArrays : offsetForRemoval should be >=0 !");
+ std::set<int> s(idsToRemoveBg,idsToRemoveEnd);
+ int nbOfGrps=arrIndx->getNumberOfTuples()-1;
+ int *arrIPtr=arrIndx->getPointer();
+ *arrIPtr++=0;
+ int previousArrI=0;
+ const int *arrPtr=arr->getConstPointer();
+ std::vector<int> arrOut;//no utility to switch to DataArrayInt because copy always needed
+ for(int i=0;i<nbOfGrps;i++,arrIPtr++)
+ {
+ if(*arrIPtr-previousArrI>offsetForRemoval)
+ {
+ for(const int *work=arrPtr+previousArrI+offsetForRemoval;work!=arrPtr+*arrIPtr;work++)
+ {
+ if(s.find(*work)==s.end())
+ arrOut.push_back(*work);
+ }
+ }
+ previousArrI=*arrIPtr;
+ *arrIPtr=(int)arrOut.size();
+ }
+ if(arr->getNumberOfTuples()==(int)arrOut.size())
+ return false;
+ arr->alloc((int)arrOut.size(),1);
+ std::copy(arrOut.begin(),arrOut.end(),arr->getPointer());
+ return true;
+}
+
+/*!
+ * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
+ * This method returns the result of the extraction ( specified by a set of ids in [\b idsOfSelectBg , \b idsOfSelectEnd ) ).
+ * The selection of extraction is done standardly in new2old format.
+ * This method returns indexed arrays using 2 arrays (arrOut,arrIndexOut).
+ *
+ * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
+ * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
+ * \param [in] arrIn arr origin array from which the extraction will be done.
+ * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
+ * \param [out] arrOut the resulting array
+ * \param [out] arrIndexOut the index array of the resulting array \b arrOut
+ * \sa MEDCouplingUMesh::ExtractFromIndexedArrays2
+ */
+void MEDCouplingUMesh::ExtractFromIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
+ DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut) throw(INTERP_KERNEL::Exception)
+{
+ if(!arrIn || !arrIndxIn)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : input pointer is NULL !");
+ arrIn->checkAllocated(); arrIndxIn->checkAllocated();
+ if(arrIn->getNumberOfComponents()!=1 || arrIndxIn->getNumberOfComponents()!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : input arrays must have exactly one component !");
+ std::size_t sz=std::distance(idsOfSelectBg,idsOfSelectEnd);
+ const int *arrInPtr=arrIn->getConstPointer();
+ const int *arrIndxPtr=arrIndxIn->getConstPointer();
+ int nbOfGrps=arrIndxIn->getNumberOfTuples()-1;
+ if(nbOfGrps<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : The format of \"arrIndxIn\" is invalid ! Its nb of tuples should be >=1 !");
+ int maxSizeOfArr=arrIn->getNumberOfTuples();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arro=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arrIo=DataArrayInt::New();
+ arrIo->alloc((int)(sz+1),1);
+ const int *idsIt=idsOfSelectBg;
+ int *work=arrIo->getPointer();
+ *work++=0;
+ int lgth=0;
+ for(std::size_t i=0;i<sz;i++,work++,idsIt++)
+ {
+ if(*idsIt>=0 && *idsIt<nbOfGrps)
+ lgth+=arrIndxPtr[*idsIt+1]-arrIndxPtr[*idsIt];
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " ! Must be in [0," << nbOfGrps << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ if(lgth>=work[-1])
+ *work=lgth;
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " and at this pos arrIndxIn[" << *idsIt;
+ oss << "+1]-arrIndxIn[" << *idsIt << "] < 0 ! The input index array is bugged !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ arro->alloc(lgth,1);
+ work=arro->getPointer();
+ idsIt=idsOfSelectBg;
+ for(std::size_t i=0;i<sz;i++,idsIt++)
+ {
+ if(arrIndxPtr[*idsIt]>=0 && arrIndxPtr[*idsIt+1]<=maxSizeOfArr)
+ work=std::copy(arrInPtr+arrIndxPtr[*idsIt],arrInPtr+arrIndxPtr[*idsIt+1],work);
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " arrIndx[" << *idsIt << "] must be >= 0 and arrIndx[";
+ oss << *idsIt << "+1] <= " << maxSizeOfArr << " (the size of arrIn)!";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ arrOut=arro.retn();
+ arrIndexOut=arrIo.retn();
+}
+
+/*!
+ * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
+ * This method returns the result of the extraction ( specified by a set of ids with a slice given by \a idsOfSelectStart, \a idsOfSelectStop and \a idsOfSelectStep ).
+ * The selection of extraction is done standardly in new2old format.
+ * This method returns indexed arrays using 2 arrays (arrOut,arrIndexOut).
+ *
+ * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
+ * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
+ * \param [in] arrIn arr origin array from which the extraction will be done.
+ * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
+ * \param [out] arrOut the resulting array
+ * \param [out] arrIndexOut the index array of the resulting array \b arrOut
+ * \sa MEDCouplingUMesh::ExtractFromIndexedArrays
+ */
+void MEDCouplingUMesh::ExtractFromIndexedArrays2(int idsOfSelectStart, int idsOfSelectStop, int idsOfSelectStep, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
+ DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut) throw(INTERP_KERNEL::Exception)
+{
+ if(!arrIn || !arrIndxIn)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays2 : input pointer is NULL !");
+ arrIn->checkAllocated(); arrIndxIn->checkAllocated();
+ if(arrIn->getNumberOfComponents()!=1 || arrIndxIn->getNumberOfComponents()!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays2 : input arrays must have exactly one component !");
+ int sz=DataArrayInt::GetNumberOfItemGivenBESRelative(idsOfSelectStart,idsOfSelectStop,idsOfSelectStep,"MEDCouplingUMesh::ExtractFromIndexedArrays2 : Input slice ");
+ const int *arrInPtr=arrIn->getConstPointer();
+ const int *arrIndxPtr=arrIndxIn->getConstPointer();
+ int nbOfGrps=arrIndxIn->getNumberOfTuples()-1;
+ if(nbOfGrps<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays2 : The format of \"arrIndxIn\" is invalid ! Its nb of tuples should be >=1 !");
+ int maxSizeOfArr=arrIn->getNumberOfTuples();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arro=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arrIo=DataArrayInt::New();
+ arrIo->alloc((int)(sz+1),1);
+ int idsIt=idsOfSelectStart;
+ int *work=arrIo->getPointer();
+ *work++=0;
+ int lgth=0;
+ for(int i=0;i<sz;i++,work++,idsIt+=idsOfSelectStep)
+ {
+ if(idsIt>=0 && idsIt<nbOfGrps)
+ lgth+=arrIndxPtr[idsIt+1]-arrIndxPtr[idsIt];
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays2 : id located on pos #" << i << " value is " << idsIt << " ! Must be in [0," << nbOfGrps << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ if(lgth>=work[-1])
+ *work=lgth;
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays2 : id located on pos #" << i << " value is " << idsIt << " and at this pos arrIndxIn[" << idsIt;
+ oss << "+1]-arrIndxIn[" << idsIt << "] < 0 ! The input index array is bugged !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ arro->alloc(lgth,1);
+ work=arro->getPointer();
+ idsIt=idsOfSelectStart;
+ for(int i=0;i<sz;i++,idsIt+=idsOfSelectStep)
+ {
+ if(arrIndxPtr[idsIt]>=0 && arrIndxPtr[idsIt+1]<=maxSizeOfArr)
+ work=std::copy(arrInPtr+arrIndxPtr[idsIt],arrInPtr+arrIndxPtr[idsIt+1],work);
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays2 : id located on pos #" << i << " value is " << idsIt << " arrIndx[" << idsIt << "] must be >= 0 and arrIndx[";
+ oss << idsIt << "+1] <= " << maxSizeOfArr << " (the size of arrIn)!";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ arrOut=arro.retn();
+ arrIndexOut=arrIo.retn();
+}
+
+/*!
+ * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
+ * This method builds an output pair (\b arrOut,\b arrIndexOut) that is a copy from \b arrIn for all cell ids \b not \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) and for
+ * cellIds \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) a copy coming from the corresponding values in input pair (\b srcArr, \b srcArrIndex).
+ * This method is an generalization of MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx that performs the same thing but by without building explicitely a result output arrays.
+ *
+ * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
+ * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
+ * \param [in] arrIn arr origin array from which the extraction will be done.
+ * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
+ * \param [in] srcArr input array that will be used as source of copy for ids in [ \b idsOfSelectBg, \b idsOfSelectEnd )
+ * \param [in] srcArrIndex index array of \b srcArr
+ * \param [out] arrOut the resulting array
+ * \param [out] arrIndexOut the index array of the resulting array \b arrOut
+ *
+ * \sa MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx
+ */
+void MEDCouplingUMesh::SetPartOfIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
+ const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex,
+ DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut) throw(INTERP_KERNEL::Exception)
+{
+ if(arrIn==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArrays : presence of null pointer in input parameter !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arro=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arrIo=DataArrayInt::New();
+ int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
+ std::vector<bool> v(nbOfTuples,true);
+ int offset=0;
+ const int *arrIndxInPtr=arrIndxIn->getConstPointer();
+ const int *srcArrIndexPtr=srcArrIndex->getConstPointer();
+ for(const int *it=idsOfSelectBg;it!=idsOfSelectEnd;it++,srcArrIndexPtr++)
+ {
+ if(*it>=0 && *it<nbOfTuples)
+ {
+ v[*it]=false;
+ offset+=(srcArrIndexPtr[1]-srcArrIndexPtr[0])-(arrIndxInPtr[*it+1]-arrIndxInPtr[*it]);
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArrays : On pos #" << std::distance(idsOfSelectBg,it) << " value is " << *it << " not in [0," << nbOfTuples << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ srcArrIndexPtr=srcArrIndex->getConstPointer();
+ arrIo->alloc(nbOfTuples+1,1);
+ arro->alloc(arrIn->getNumberOfTuples()+offset,1);
+ const int *arrInPtr=arrIn->getConstPointer();
+ const int *srcArrPtr=srcArr->getConstPointer();
+ int *arrIoPtr=arrIo->getPointer(); *arrIoPtr++=0;
+ int *arroPtr=arro->getPointer();
+ for(int ii=0;ii<nbOfTuples;ii++,arrIoPtr++)
+ {
+ if(v[ii])
+ {
+ arroPtr=std::copy(arrInPtr+arrIndxInPtr[ii],arrInPtr+arrIndxInPtr[ii+1],arroPtr);
+ *arrIoPtr=arrIoPtr[-1]+(arrIndxInPtr[ii+1]-arrIndxInPtr[ii]);
+ }
+ else
+ {
+ std::size_t pos=std::distance(idsOfSelectBg,std::find(idsOfSelectBg,idsOfSelectEnd,ii));
+ arroPtr=std::copy(srcArrPtr+srcArrIndexPtr[pos],srcArrPtr+srcArrIndexPtr[pos+1],arroPtr);
+ *arrIoPtr=arrIoPtr[-1]+(srcArrIndexPtr[pos+1]-srcArrIndexPtr[pos]);
+ }
+ }
+ arrOut=arro.retn();
+ arrIndexOut=arrIo.retn();
+}
+
+/*!
+ * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
+ * This method is an specialization of MEDCouplingUMesh::SetPartOfIndexedArrays in the case of assignement do not modify the index in \b arrIndxIn.
+ *
+ * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
+ * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
+ * \param [in,out] arrInOut arr origin array from which the extraction will be done.
+ * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
+ * \param [in] srcArr input array that will be used as source of copy for ids in [ \b idsOfSelectBg , \b idsOfSelectEnd )
+ * \param [in] srcArrIndex index array of \b srcArr
+ *
+ * \sa MEDCouplingUMesh::SetPartOfIndexedArrays
+ */
+void MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx(const int *idsOfSelectBg, const int *idsOfSelectEnd, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn,
+ const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex) throw(INTERP_KERNEL::Exception)
+{
+ if(arrInOut==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : presence of null pointer in input parameter !");
+ int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
+ const int *arrIndxInPtr=arrIndxIn->getConstPointer();
+ const int *srcArrIndexPtr=srcArrIndex->getConstPointer();
+ int *arrInOutPtr=arrInOut->getPointer();
+ const int *srcArrPtr=srcArr->getConstPointer();
+ for(const int *it=idsOfSelectBg;it!=idsOfSelectEnd;it++,srcArrIndexPtr++)
+ {
+ if(*it>=0 && *it<nbOfTuples)
+ {
+ if(srcArrIndexPtr[1]-srcArrIndexPtr[0]==arrIndxInPtr[*it+1]-arrIndxInPtr[*it])
+ std::copy(srcArrPtr+srcArrIndexPtr[0],srcArrPtr+srcArrIndexPtr[1],arrInOutPtr+arrIndxInPtr[*it]);
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : On pos #" << std::distance(idsOfSelectBg,it) << " id (idsOfSelectBg[" << std::distance(idsOfSelectBg,it)<< "]) is " << *it << " arrIndxIn[id+1]-arrIndxIn[id]!=srcArrIndex[pos+1]-srcArrIndex[pos] !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : On pos #" << std::distance(idsOfSelectBg,it) << " value is " << *it << " not in [0," << nbOfTuples << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+}
+
+/*!
+ * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arr indexes is in \b arrIndxIn.
+ * This method expects that these two input arrays come from the output of MEDCouplingUMesh::computeNeighborsOfCells method.
+ * This method start from id 0 that will be contained in output DataArrayInt. It searches then all neighbors of id0 regarding arrIn[arrIndxIn[0]:arrIndxIn[0+1]].
+ * Then it is repeated recursively until either all ids are fetched or no more ids are reachable step by step.
+ * A negative value in \b arrIn means that it is ignored.
+ * This method is useful to see if a mesh is contiguous regarding its connectivity. If it is not the case the size of returned array is different from arrIndxIn->getNumberOfTuples()-1.
+ *
+ * \param [in] arrIn arr origin array from which the extraction will be done.
+ * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
+ * \return a newly allocated DataArray that stores all ids fetched by the gradually spread process.
+ * \sa MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed, MEDCouplingUMesh::partitionBySpreadZone
+ */
+DataArrayInt *MEDCouplingUMesh::ComputeSpreadZoneGradually(const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn)
+{
+ int seed=0,nbOfDepthPeelingPerformed=0;
+ return ComputeSpreadZoneGraduallyFromSeed(&seed,&seed+1,arrIn,arrIndxIn,-1,nbOfDepthPeelingPerformed);
+}
+
+/*!
+ * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arr indexes is in \b arrIndxIn.
+ * This method expects that these two input arrays come from the output of MEDCouplingUMesh::computeNeighborsOfCells method.
+ * This method start from id 0 that will be contained in output DataArrayInt. It searches then all neighbors of id0 regarding arrIn[arrIndxIn[0]:arrIndxIn[0+1]].
+ * Then it is repeated recursively until either all ids are fetched or no more ids are reachable step by step.
+ * A negative value in \b arrIn means that it is ignored.
+ * This method is useful to see if a mesh is contiguous regarding its connectivity. If it is not the case the size of returned array is different from arrIndxIn->getNumberOfTuples()-1.
+ * \param [in] seedBg the begin pointer (included) of an array containing the seed of the search zone
+ * \param [in] seedEnd the end pointer (not included) of an array containing the seed of the search zone
+ * \param [in] arrIn arr origin array from which the extraction will be done.
+ * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
+ * \param [in] nbOfDepthPeeling the max number of peels requested in search. By default -1, that is to say, no limit.
+ * \param [out] nbOfDepthPeelingPerformed the number of peels effectively performed. May be different from \a nbOfDepthPeeling
+ * \return a newly allocated DataArray that stores all ids fetched by the gradually spread process.
+ * \sa MEDCouplingUMesh::partitionBySpreadZone
+ */
+DataArrayInt *MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed(const int *seedBg, const int *seedEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, int nbOfDepthPeeling, int& nbOfDepthPeelingPerformed)
+{
+ nbOfDepthPeelingPerformed=0;
+ if(!arrIndxIn)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed : arrIndxIn input pointer is NULL !");
+ int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
+ if(nbOfTuples<=0)
+ {
+ DataArrayInt *ret=DataArrayInt::New(); ret->alloc(0,1);
+ return ret;
+ }
+ //
+ std::vector<bool> fetched(nbOfTuples,false);
+ return ComputeSpreadZoneGraduallyFromSeedAlg(fetched,seedBg,seedEnd,arrIn,arrIndxIn,nbOfDepthPeeling,nbOfDepthPeelingPerformed);
+}
+
+DataArrayInt *MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeedAlg(std::vector<bool>& fetched, const int *seedBg, const int *seedEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, int nbOfDepthPeeling, int& nbOfDepthPeelingPerformed)
+{
+ nbOfDepthPeelingPerformed=0;
+ if(!seedBg || !seedEnd || !arrIn || !arrIndxIn)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeedAlg : some input pointer is NULL !");
+ int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
+ std::vector<bool> fetched2(nbOfTuples,false);
+ int i=0;
+ for(const int *seedElt=seedBg;seedElt!=seedEnd;seedElt++,i++)
+ {
+ if(*seedElt>=0 && *seedElt<nbOfTuples)
+ { fetched[*seedElt]=true; fetched2[*seedElt]=true; }
+ else
+ { std::ostringstream oss; oss << "MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeedAlg : At pos #" << i << " of seeds value is " << *seedElt << "! Should be in [0," << nbOfTuples << ") !"; throw INTERP_KERNEL::Exception(oss.str().c_str()); }
+ }
+ const int *arrInPtr=arrIn->getConstPointer();
+ const int *arrIndxPtr=arrIndxIn->getConstPointer();
+ int targetNbOfDepthPeeling=nbOfDepthPeeling!=-1?nbOfDepthPeeling:std::numeric_limits<int>::max();
+ std::vector<int> idsToFetch1(seedBg,seedEnd);
+ std::vector<int> idsToFetch2;
+ std::vector<int> *idsToFetch=&idsToFetch1;
+ std::vector<int> *idsToFetchOther=&idsToFetch2;
+ while(!idsToFetch->empty() && nbOfDepthPeelingPerformed<targetNbOfDepthPeeling)
+ {
+ for(std::vector<int>::const_iterator it=idsToFetch->begin();it!=idsToFetch->end();it++)
+ for(const int *it2=arrInPtr+arrIndxPtr[*it];it2!=arrInPtr+arrIndxPtr[*it+1];it2++)
+ if(!fetched[*it2])
+ { fetched[*it2]=true; fetched2[*it2]=true; idsToFetchOther->push_back(*it2); }
+ std::swap(idsToFetch,idsToFetchOther);
+ idsToFetchOther->clear();
+ nbOfDepthPeelingPerformed++;
+ }
+ int lgth=(int)std::count(fetched2.begin(),fetched2.end(),true);
+ i=0;
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(lgth,1);
+ int *retPtr=ret->getPointer();
+ for(std::vector<bool>::const_iterator it=fetched2.begin();it!=fetched2.end();it++,i++)
+ if(*it)
+ *retPtr++=i;
+ return ret.retn();
+}
+
+/*!
+ * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
+ * This method builds an output pair (\b arrOut,\b arrIndexOut) that is a copy from \b arrIn for all cell ids \b not \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) and for
+ * cellIds \b in [\b idsOfSelectBg, \b idsOfSelectEnd) a copy coming from the corresponding values in input pair (\b srcArr, \b srcArrIndex).
+ * This method is an generalization of MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx that performs the same thing but by without building explicitely a result output arrays.
+ *
+ * \param [in] start begin of set of ids of the input extraction (included)
+ * \param [in] end end of set of ids of the input extraction (excluded)
+ * \param [in] step step of the set of ids in range mode.
+ * \param [in] arrIn arr origin array from which the extraction will be done.
+ * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
+ * \param [in] srcArr input array that will be used as source of copy for ids in [\b idsOfSelectBg, \b idsOfSelectEnd)
+ * \param [in] srcArrIndex index array of \b srcArr
+ * \param [out] arrOut the resulting array
+ * \param [out] arrIndexOut the index array of the resulting array \b arrOut
+ *
+ * \sa MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx MEDCouplingUMesh::SetPartOfIndexedArrays
+ */
+void MEDCouplingUMesh::SetPartOfIndexedArrays2(int start, int end, int step, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
+ const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex,
+ DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut) throw(INTERP_KERNEL::Exception)
+{
+ if(arrIn==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArrays2 : presence of null pointer in input parameter !");
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arro=DataArrayInt::New();
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> arrIo=DataArrayInt::New();
+ int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
+ int offset=0;
+ const int *arrIndxInPtr=arrIndxIn->getConstPointer();
+ const int *srcArrIndexPtr=srcArrIndex->getConstPointer();
+ int nbOfElemsToSet=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::SetPartOfIndexedArrays2 : ");
+ int it=start;
+ for(int i=0;i<nbOfElemsToSet;i++,srcArrIndexPtr++,it+=step)
+ {
+ if(it>=0 && it<nbOfTuples)
+ offset+=(srcArrIndexPtr[1]-srcArrIndexPtr[0])-(arrIndxInPtr[it+1]-arrIndxInPtr[it]);
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArrays2 : On pos #" << i << " value is " << it << " not in [0," << nbOfTuples << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ srcArrIndexPtr=srcArrIndex->getConstPointer();
+ arrIo->alloc(nbOfTuples+1,1);
+ arro->alloc(arrIn->getNumberOfTuples()+offset,1);
+ const int *arrInPtr=arrIn->getConstPointer();
+ const int *srcArrPtr=srcArr->getConstPointer();
+ int *arrIoPtr=arrIo->getPointer(); *arrIoPtr++=0;
+ int *arroPtr=arro->getPointer();
+ for(int ii=0;ii<nbOfTuples;ii++,arrIoPtr++)
+ {
+ int pos=DataArray::GetPosOfItemGivenBESRelativeNoThrow(ii,start,end,step);
+ if(pos<0)
+ {
+ arroPtr=std::copy(arrInPtr+arrIndxInPtr[ii],arrInPtr+arrIndxInPtr[ii+1],arroPtr);
+ *arrIoPtr=arrIoPtr[-1]+(arrIndxInPtr[ii+1]-arrIndxInPtr[ii]);
+ }
+ else
+ {
+ arroPtr=std::copy(srcArrPtr+srcArrIndexPtr[pos],srcArrPtr+srcArrIndexPtr[pos+1],arroPtr);
+ *arrIoPtr=arrIoPtr[-1]+(srcArrIndexPtr[pos+1]-srcArrIndexPtr[pos]);
+ }
+ }
+ arrOut=arro.retn();
+ arrIndexOut=arrIo.retn();
+}
+
+/*!
+ * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
+ * This method is an specialization of MEDCouplingUMesh::SetPartOfIndexedArrays in the case of assignement do not modify the index in \b arrIndxIn.
+ *
+ * \param [in] start begin of set of ids of the input extraction (included)
+ * \param [in] end end of set of ids of the input extraction (excluded)
+ * \param [in] step step of the set of ids in range mode.
+ * \param [in,out] arrInOut arr origin array from which the extraction will be done.
+ * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
+ * \param [in] srcArr input array that will be used as source of copy for ids in [\b idsOfSelectBg, \b idsOfSelectEnd)
+ * \param [in] srcArrIndex index array of \b srcArr
+ *
+ * \sa MEDCouplingUMesh::SetPartOfIndexedArrays2 MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx
+ */
+void MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx2(int start, int end, int step, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn,
+ const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex) throw(INTERP_KERNEL::Exception)
+{
+ if(arrInOut==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx2 : presence of null pointer in input parameter !");
+ int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
+ const int *arrIndxInPtr=arrIndxIn->getConstPointer();
+ const int *srcArrIndexPtr=srcArrIndex->getConstPointer();
+ int *arrInOutPtr=arrInOut->getPointer();
+ const int *srcArrPtr=srcArr->getConstPointer();
+ int nbOfElemsToSet=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx2 : ");
+ int it=start;
+ for(int i=0;i<nbOfElemsToSet;i++,srcArrIndexPtr++,it+=step)
+ {
+ if(it>=0 && it<nbOfTuples)
+ {
+ if(srcArrIndexPtr[1]-srcArrIndexPtr[0]==arrIndxInPtr[it+1]-arrIndxInPtr[it])
+ std::copy(srcArrPtr+srcArrIndexPtr[0],srcArrPtr+srcArrIndexPtr[1],arrInOutPtr+arrIndxInPtr[it]);
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx2 : On pos #" << i << " id (idsOfSelectBg[" << i << "]) is " << it << " arrIndxIn[id+1]-arrIndxIn[id]!=srcArrIndex[pos+1]-srcArrIndex[pos] !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx2 : On pos #" << i << " value is " << it << " not in [0," << nbOfTuples << ") !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
+ }
+}
+
+/*!
+ * \b this is expected to be a mesh fully defined whose spaceDim==meshDim.
+ * It returns a new allocated mesh having the same mesh dimension and lying on same coordinates.
+ * The returned mesh contains as poly cells as number of contiguous zone (regarding connectivity).
+ * A spread contiguous zone is built using poly cells (polyhedra in 3D, polygons in 2D and polyline in 1D).
+ * The sum of measure field of returned mesh is equal to the sum of measure field of this.
+ *
+ * \return a newly allocated mesh lying on the same coords than \b this with same meshdimension than \b this.
+ */
+MEDCouplingUMesh *MEDCouplingUMesh::buildSpreadZonesWithPoly() const
+{
+ checkFullyDefined();
+ int mdim=getMeshDimension();
+ int spaceDim=getSpaceDimension();
+ if(mdim!=spaceDim)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSpreadZonesWithPoly : meshdimension and spacedimension do not match !");
+ std::vector<DataArrayInt *> partition=partitionBySpreadZone();
+ std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > partitionAuto; partitionAuto.reserve(partition.size());
+ std::copy(partition.begin(),partition.end(),std::back_insert_iterator<std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > >(partitionAuto));
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> ret=MEDCouplingUMesh::New(getName(),mdim);
+ ret->setCoords(getCoords());
+ ret->allocateCells((int)partition.size());
+ //
+ for(std::vector<DataArrayInt *>::const_iterator it=partition.begin();it!=partition.end();it++)
+ {
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf((*it)->begin(),(*it)->end(),true));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> cell;
+ switch(mdim)
+ {
+ case 2:
+ cell=tmp->buildUnionOf2DMesh();
+ break;
+ case 3:
+ cell=tmp->buildUnionOf3DMesh();
+ break;
+ default:
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSpreadZonesWithPoly : meshdimension supported are [2,3] ! Not implemented yet for others !");
+ }
+
+ ret->insertNextCell((INTERP_KERNEL::NormalizedCellType)cell->getIJSafe(0,0),cell->getNumberOfTuples()-1,cell->getConstPointer()+1);
+ }
+ //
+ ret->finishInsertingCells();
+ return ret.retn();
+}
+
+/*!
+ * This method partitions \b this into contiguous zone.
+ * This method only needs a well defined connectivity. Coordinates are not considered here.
+ * This method returns a vector of \b newly allocated arrays that the caller has to deal with.
+ */
+std::vector<DataArrayInt *> MEDCouplingUMesh::partitionBySpreadZone() const
+{
+ int nbOfCellsCur=getNumberOfCells();
+ std::vector<DataArrayInt *> ret;
+ if(nbOfCellsCur<=0)
+ return ret;
+ DataArrayInt *neigh=0,*neighI=0;
+ computeNeighborsOfCells(neigh,neighI);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> neighAuto(neigh),neighIAuto(neighI);
+ std::vector<bool> fetchedCells(nbOfCellsCur,false);
+ std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > ret2;
+ int seed=0;
+ while(seed<nbOfCellsCur)
+ {
+ int nbOfPeelPerformed=0;
+ ret2.push_back(ComputeSpreadZoneGraduallyFromSeedAlg(fetchedCells,&seed,&seed+1,neigh,neighI,-1,nbOfPeelPerformed));
+ seed=(int)std::distance(fetchedCells.begin(),std::find(fetchedCells.begin()+seed,fetchedCells.end(),false));
+ }
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >::iterator it=ret2.begin();it!=ret2.end();it++)
+ ret.push_back((*it).retn());
+ return ret;
+}
+
+/*!
+ * This method returns given a distribution of cell type (returned for example by MEDCouplingUMesh::getDistributionOfTypes method and customized after) a
+ * newly allocated DataArrayInt instance with 2 components ready to be interpreted as input of DataArrayInt::findRangeIdForEachTuple method.
+ *
+ * \param [in] code a code with the same format than those returned by MEDCouplingUMesh::getDistributionOfTypes except for the code[3*k+2] that should contain start id of chunck.
+ * \return a newly allocated DataArrayInt to be managed by the caller.
+ * \throw In case of \a code has not the right format (typically of size 3*n)
+ */
+DataArrayInt *MEDCouplingUMesh::ComputeRangesFromTypeDistribution(const std::vector<int>& code)
+{
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret=DataArrayInt::New();
+ std::size_t nb=code.size()/3;
+ if(code.size()%3!=0)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeRangesFromTypeDistribution : invalid input code !");
+ ret->alloc((int)nb,2);
+ int *retPtr=ret->getPointer();
+ for(std::size_t i=0;i<nb;i++,retPtr+=2)
+ {
+ retPtr[0]=code[3*i+2];
+ retPtr[1]=code[3*i+2]+code[3*i+1];
+ }
+ return ret.retn();
+}
+
+/*!
+ * This method expects that \a this a 3D mesh (spaceDim=3 and meshDim=3) with all coordinates and connectivities set.
+ * All cells in \a this are expected to be linear 3D cells.
+ * This method will split **all** 3D cells in \a this into INTERP_KERNEL::NORM_TETRA4 cells and put them in the returned mesh.
+ * It leads to an increase to number of cells.
+ * This method contrary to MEDCouplingUMesh::simplexize can append coordinates in \a this to perform its work.
+ * The \a nbOfAdditionalPoints returned value informs about it. If > 0, the coordinates array in returned mesh will have \a nbOfAdditionalPoints
+ * more tuples (nodes) than in \a this. Anyway, all the nodes in \a this (with the same order) will be in the returned mesh.
+ *
+ * \param [in] policy - the policy of splitting that must be in (PLANAR_FACE_5, PLANAR_FACE_6, GENERAL_24, GENERAL_48). The policy will be used only for INTERP_KERNEL::NORM_HEXA8 cells.
+ * For all other cells, the splitting policy will be ignored.
+ * \param [out] nbOfAdditionalPoints - number of nodes added to \c this->_coords. If > 0 a new coordinates object will be constructed result of the aggregation of the old one and the new points added.
+ * \param [out] n2oCells - A new instance of DataArrayInt holding, for each new cell,
+ * an id of old cell producing it. The caller is to delete this array using
+ * decrRef() as it is no more needed.
+ * \return MEDCoupling1SGTUMesh * - the mesh containing only INTERP_KERNEL::NORM_TETRA4 cells.
+ *
+ * \warning This method operates on each cells in this independantly ! So it can leads to non conform mesh in returned value ! If you expect to have a conform mesh in output
+ * the policy PLANAR_FACE_6 should be used on a mesh sorted with MEDCoupling1SGTUMesh::sortHexa8EachOther.
+ *
+ * \throw If \a this is not a 3D mesh (spaceDim==3 and meshDim==3).
+ * \throw If \a this is not fully constituted with linear 3D cells.
+ * \sa MEDCouplingUMesh::simplexize, MEDCoupling1SGTUMesh::sortHexa8EachOther
+ */
+MEDCoupling1SGTUMesh *MEDCouplingUMesh::tetrahedrize(int policy, DataArrayInt *& n2oCells, int& nbOfAdditionalPoints) const
+{
+ INTERP_KERNEL::SplittingPolicy pol((INTERP_KERNEL::SplittingPolicy)policy);
+ checkConnectivityFullyDefined();
+ if(getMeshDimension()!=3 || getSpaceDimension()!=3)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tetrahedrize : only available for mesh with meshdim == 3 and spacedim == 3 !");
+ int nbOfCells(getNumberOfCells()),nbNodes(getNumberOfNodes());
+ MEDCouplingAutoRefCountObjectPtr<MEDCoupling1SGTUMesh> ret0(MEDCoupling1SGTUMesh::New(getName(),INTERP_KERNEL::NORM_TETRA4));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(nbOfCells,1);
+ int *retPt(ret->getPointer());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> newConn(DataArrayInt::New()); newConn->alloc(0,1);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> addPts(DataArrayDouble::New()); addPts->alloc(0,1);
+ const int *oldc(_nodal_connec->begin());
+ const int *oldci(_nodal_connec_index->begin());
+ const double *coords(_coords->begin());
+ for(int i=0;i<nbOfCells;i++,oldci++,retPt++)
+ {
+ std::vector<int> a; std::vector<double> b;
+ INTERP_KERNEL::SplitIntoTetras(pol,(INTERP_KERNEL::NormalizedCellType)oldc[oldci[0]],oldc+oldci[0]+1,oldc+oldci[1],coords,a,b);
+ std::size_t nbOfTet(a.size()/4); *retPt=(int)nbOfTet;
+ const int *aa(&a[0]);
+ if(!b.empty())
+ {
+ for(std::vector<int>::iterator it=a.begin();it!=a.end();it++)
+ if(*it<0)
+ *it=(-(*(it))-1+nbNodes);
+ addPts->insertAtTheEnd(b.begin(),b.end());
+ nbNodes+=(int)b.size()/3;
+ }
+ for(std::size_t j=0;j<nbOfTet;j++,aa+=4)
+ newConn->insertAtTheEnd(aa,aa+4);
+ }
+ if(!addPts->empty())
+ {
+ addPts->rearrange(3);
+ nbOfAdditionalPoints=addPts->getNumberOfTuples();
+ addPts=DataArrayDouble::Aggregate(getCoords(),addPts);
+ ret0->setCoords(addPts);
+ }
+ else
+ {
+ nbOfAdditionalPoints=0;
+ ret0->setCoords(getCoords());
+ }
+ ret0->setNodalConnectivity(newConn);
+ //
+ ret->computeOffsets2();
+ n2oCells=ret->buildExplicitArrOfSliceOnScaledArr(0,nbOfCells,1);
+ return ret0.retn();
+}
+
+/*!
+ * It is the linear part of MEDCouplingUMesh::split2DCells. Here no additionnal nodes will be added in \b this. So coordinates pointer remain unchanged (is not even touch).
+ *
+ * \sa MEDCouplingUMesh::split2DCells
+ */
+void MEDCouplingUMesh::split2DCellsLinear(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *subNodesInSeg, const DataArrayInt *subNodesInSegI)
+{
+ checkConnectivityFullyDefined();
+ int ncells(getNumberOfCells()),lgthToReach(getMeshLength()+subNodesInSeg->getNumberOfTuples());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c(DataArrayInt::New()); c->alloc((std::size_t)lgthToReach);
+ const int *subPtr(subNodesInSeg->begin()),*subIPtr(subNodesInSegI->begin()),*descPtr(desc->begin()),*descIPtr(descI->begin()),*oldConn(getNodalConnectivity()->begin());
+ int *cPtr(c->getPointer()),*ciPtr(getNodalConnectivityIndex()->getPointer());
+ int prevPosOfCi(ciPtr[0]);
+ for(int i=0;i<ncells;i++,ciPtr++,descIPtr++)
+ {
+ int offset(descIPtr[0]),sz(descIPtr[1]-descIPtr[0]),deltaSz(0);
+ *cPtr++=(int)INTERP_KERNEL::NORM_POLYGON; *cPtr++=oldConn[prevPosOfCi+1];
+ for(int j=0;j<sz;j++)
+ {
+ int offset2(subIPtr[descPtr[offset+j]]),sz2(subIPtr[descPtr[offset+j]+1]-subIPtr[descPtr[offset+j]]);
+ for(int k=0;k<sz2;k++)
+ *cPtr++=subPtr[offset2+k];
+ if(j!=sz-1)
+ *cPtr++=oldConn[prevPosOfCi+j+2];
+ deltaSz+=sz2;
+ }
+ prevPosOfCi=ciPtr[1];
+ ciPtr[1]=ciPtr[0]+1+sz+deltaSz;//sz==old nb of nodes because (nb of subedges=nb of nodes for polygons)
+ }
+ if(c->end()!=cPtr)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCellsLinear : Some of edges to be split are orphan !");
+ _nodal_connec->decrRef();
+ _nodal_connec=c.retn(); _types.clear(); _types.insert(INTERP_KERNEL::NORM_POLYGON);
+}
+
+int internalAddPoint(const INTERP_KERNEL::Edge *e, int id, const double *coo, int startId, int endId, DataArrayDouble& addCoo, int& nodesCnter)
+{
+ if(id!=-1)
+ return id;
+ else
+ {
+ int ret(nodesCnter++);
+ double newPt[2];
+ e->getMiddleOfPoints(coo+2*startId,coo+2*endId,newPt);
+ addCoo.insertAtTheEnd(newPt,newPt+2);
+ return ret;
+ }
+}
+
+/*!
+ * It is the quadratic part of MEDCouplingUMesh::split2DCells. Here some additionnal nodes can be added at the end of coordinates array object.
+ *
+ * \return int - the number of new nodes created.
+ * \sa MEDCouplingUMesh::split2DCells
+ */
+int MEDCouplingUMesh::split2DCellsQuadratic(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *subNodesInSeg, const DataArrayInt *subNodesInSegI, const DataArrayInt *mid, const DataArrayInt *midI)
+{
+ checkCoherency();
+ int ncells(getNumberOfCells()),lgthToReach(getMeshLength()+2*subNodesInSeg->getNumberOfTuples()),nodesCnt(getNumberOfNodes());
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> c(DataArrayInt::New()); c->alloc((std::size_t)lgthToReach);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> addCoo(DataArrayDouble::New()); addCoo->alloc(0,1);
+ const int *subPtr(subNodesInSeg->begin()),*subIPtr(subNodesInSegI->begin()),*descPtr(desc->begin()),*descIPtr(descI->begin()),*oldConn(getNodalConnectivity()->begin());
+ const int *midPtr(mid->begin()),*midIPtr(midI->begin());
+ const double *oldCoordsPtr(getCoords()->begin());
+ int *cPtr(c->getPointer()),*ciPtr(getNodalConnectivityIndex()->getPointer());
+ int prevPosOfCi(ciPtr[0]);
+ for(int i=0;i<ncells;i++,ciPtr++,descIPtr++)
+ {
+ int offset(descIPtr[0]),sz(descIPtr[1]-descIPtr[0]),deltaSz(sz);
+ for(int j=0;j<sz;j++)
+ { int sz2(subIPtr[descPtr[offset+j]+1]-subIPtr[descPtr[offset+j]]); deltaSz+=sz2; }
+ *cPtr++=(int)INTERP_KERNEL::NORM_QPOLYG; cPtr[0]=oldConn[prevPosOfCi+1];
+ for(int j=0;j<sz;j++)//loop over subedges of oldConn
+ {
+ int offset2(subIPtr[descPtr[offset+j]]),sz2(subIPtr[descPtr[offset+j]+1]-subIPtr[descPtr[offset+j]]),offset3(midIPtr[descPtr[offset+j]]);
+ if(sz2==0)
+ {
+ if(j<sz-1)
+ cPtr[1]=oldConn[prevPosOfCi+2+j];
+ cPtr[deltaSz]=oldConn[prevPosOfCi+1+j+sz]; cPtr++;
+ continue;
+ }
+ std::vector<INTERP_KERNEL::Node *> ns(3);
+ ns[0]=new INTERP_KERNEL::Node(oldCoordsPtr[2*oldConn[prevPosOfCi+1+j]],oldCoordsPtr[2*oldConn[prevPosOfCi+1+j]+1]);
+ ns[1]=new INTERP_KERNEL::Node(oldCoordsPtr[2*oldConn[prevPosOfCi+1+(1+j)%sz]],oldCoordsPtr[2*oldConn[prevPosOfCi+1+(1+j)%sz]+1]);
+ ns[2]=new INTERP_KERNEL::Node(oldCoordsPtr[2*oldConn[prevPosOfCi+1+sz+j]],oldCoordsPtr[2*oldConn[prevPosOfCi+1+sz+j]+1]);
+ MEDCouplingAutoRefCountObjectPtr<INTERP_KERNEL::Edge> e(INTERP_KERNEL::QuadraticPolygon::BuildArcCircleEdge(ns));
+ for(int k=0;k<sz2;k++)//loop over subsplit of current subedge
+ {
+ cPtr[1]=subPtr[offset2+k];
+ cPtr[deltaSz]=internalAddPoint(e,midPtr[offset3+k],oldCoordsPtr,cPtr[0],cPtr[1],*addCoo,nodesCnt); cPtr++;
+ }
+ int tmpEnd(oldConn[prevPosOfCi+1+(j+1)%sz]);
+ if(j!=sz-1)
+ { cPtr[1]=tmpEnd; }
+ cPtr[deltaSz]=internalAddPoint(e,midPtr[offset3+sz2],oldCoordsPtr,cPtr[0],tmpEnd,*addCoo,nodesCnt); cPtr++;
+ }
+ prevPosOfCi=ciPtr[1]; cPtr+=deltaSz;
+ ciPtr[1]=ciPtr[0]+1+2*deltaSz;//sz==old nb of nodes because (nb of subedges=nb of nodes for polygons)
+ }
+ if(c->end()!=cPtr)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCellsQuadratic : Some of edges to be split are orphan !");
+ _nodal_connec->decrRef();
+ _nodal_connec=c.retn(); _types.clear(); _types.insert(INTERP_KERNEL::NORM_QPOLYG);
+ addCoo->rearrange(2);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> coo(DataArrayDouble::Aggregate(getCoords(),addCoo));//info are copied from getCoords() by using Aggregate
+ setCoords(coo);
+ return addCoo->getNumberOfTuples();
+}
+
+MEDCouplingUMeshCellIterator::MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh):_mesh(mesh),_cell(new MEDCouplingUMeshCell(mesh)),
+ _own_cell(true),_cell_id(-1),_nb_cell(0)
+{
+ if(mesh)
+ {
+ mesh->incrRef();
+ _nb_cell=mesh->getNumberOfCells();
+ }
+}
+
+MEDCouplingUMeshCellIterator::~MEDCouplingUMeshCellIterator()
+{
+ if(_mesh)
+ _mesh->decrRef();
+ if(_own_cell)
+ delete _cell;
+}
+
+MEDCouplingUMeshCellIterator::MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh, MEDCouplingUMeshCell *itc, int bg, int end):_mesh(mesh),_cell(itc),
+ _own_cell(false),_cell_id(bg-1),
+ _nb_cell(end)
+{
+ if(mesh)
+ mesh->incrRef();
+}
+
+MEDCouplingUMeshCell *MEDCouplingUMeshCellIterator::nextt()
+{
+ _cell_id++;
+ if(_cell_id<_nb_cell)
+ {
+ _cell->next();
+ return _cell;
+ }
+ else
+ return 0;
+}
+
+MEDCouplingUMeshCellByTypeEntry::MEDCouplingUMeshCellByTypeEntry(MEDCouplingUMesh *mesh):_mesh(mesh)
+{
+ if(_mesh)
+ _mesh->incrRef();
+}
+
+MEDCouplingUMeshCellByTypeIterator *MEDCouplingUMeshCellByTypeEntry::iterator()
+{
+ return new MEDCouplingUMeshCellByTypeIterator(_mesh);
+}
+
+MEDCouplingUMeshCellByTypeEntry::~MEDCouplingUMeshCellByTypeEntry()
+{
+ if(_mesh)
+ _mesh->decrRef();
+}
+
+MEDCouplingUMeshCellEntry::MEDCouplingUMeshCellEntry(MEDCouplingUMesh *mesh, INTERP_KERNEL::NormalizedCellType type, MEDCouplingUMeshCell *itc, int bg, int end):_mesh(mesh),_type(type),
+ _itc(itc),
+ _bg(bg),_end(end)
+{
+ if(_mesh)
+ _mesh->incrRef();
+}
+
+MEDCouplingUMeshCellEntry::~MEDCouplingUMeshCellEntry()
+{
+ if(_mesh)
+ _mesh->decrRef();
+}
+
+INTERP_KERNEL::NormalizedCellType MEDCouplingUMeshCellEntry::getType() const
+{
+ return _type;
+}
+
+int MEDCouplingUMeshCellEntry::getNumberOfElems() const
+{
+ return _end-_bg;
+}
+
+MEDCouplingUMeshCellIterator *MEDCouplingUMeshCellEntry::iterator()
+{
+ return new MEDCouplingUMeshCellIterator(_mesh,_itc,_bg,_end);
+}
+
+MEDCouplingUMeshCellByTypeIterator::MEDCouplingUMeshCellByTypeIterator(MEDCouplingUMesh *mesh):_mesh(mesh),_cell(new MEDCouplingUMeshCell(mesh)),_cell_id(0),_nb_cell(0)
+{
+ if(mesh)
+ {
+ mesh->incrRef();
+ _nb_cell=mesh->getNumberOfCells();
+ }
+}
+
+MEDCouplingUMeshCellByTypeIterator::~MEDCouplingUMeshCellByTypeIterator()
+{
+ if(_mesh)
+ _mesh->decrRef();
+ delete _cell;
+}
+
+MEDCouplingUMeshCellEntry *MEDCouplingUMeshCellByTypeIterator::nextt()
+{
+ const int *c=_mesh->getNodalConnectivity()->getConstPointer();
+ const int *ci=_mesh->getNodalConnectivityIndex()->getConstPointer();
+ if(_cell_id<_nb_cell)
+ {
+ INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[_cell_id]];
+ int nbOfElems=(int)std::distance(ci+_cell_id,std::find_if(ci+_cell_id,ci+_nb_cell,ParaMEDMEMImpl::ConnReader(c,type)));
+ int startId=_cell_id;
+ _cell_id+=nbOfElems;
+ return new MEDCouplingUMeshCellEntry(_mesh,type,_cell,startId,_cell_id);
+ }
+ else
+ return 0;
+}
+
+MEDCouplingUMeshCell::MEDCouplingUMeshCell(MEDCouplingUMesh *mesh):_conn(0),_conn_indx(0),_conn_lgth(NOTICABLE_FIRST_VAL)
+{
+ if(mesh)
+ {
+ _conn=mesh->getNodalConnectivity()->getPointer();
+ _conn_indx=mesh->getNodalConnectivityIndex()->getPointer();
+ }
+}
+
+void MEDCouplingUMeshCell::next()
+{
+ if(_conn_lgth!=NOTICABLE_FIRST_VAL)
+ {
+ _conn+=_conn_lgth;
+ _conn_indx++;
+ }
+ _conn_lgth=_conn_indx[1]-_conn_indx[0];
+}
+
+std::string MEDCouplingUMeshCell::repr() const
+{
+ if(_conn_lgth!=NOTICABLE_FIRST_VAL)
+ {
+ std::ostringstream oss; oss << "Cell Type " << INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)_conn[0]).getRepr();
+ oss << " : ";
+ std::copy(_conn+1,_conn+_conn_lgth,std::ostream_iterator<int>(oss," "));
+ return oss.str();
+ }
+ else
+ return std::string("MEDCouplingUMeshCell::repr : Invalid pos");
+}
+
+INTERP_KERNEL::NormalizedCellType MEDCouplingUMeshCell::getType() const
+{
+ if(_conn_lgth!=NOTICABLE_FIRST_VAL)
+ return (INTERP_KERNEL::NormalizedCellType)_conn[0];
+ else
+ return INTERP_KERNEL::NORM_ERROR;
+}
+
+const int *MEDCouplingUMeshCell::getAllConn(int& lgth) const
+{
+ lgth=_conn_lgth;
+ if(_conn_lgth!=NOTICABLE_FIRST_VAL)
+ return _conn;
+ else
+ return 0;
}
