//
// Author : Anthony Geay (EDF R&D)
-#include "MEDCouplingUMesh.hxx"
+#include "MEDCouplingUMesh.txx"
#include "MEDCouplingCMesh.hxx"
#include "MEDCoupling1GTUMesh.hxx"
#include "MEDCouplingFieldDouble.hxx"
* Returns a new MEDCouplingUMesh which is a full copy of \a this one. No data is shared
* between \a this and the new mesh.
* \return MEDCouplingUMesh * - a new instance of MEDCouplingMesh. The caller is to
- * delete this mesh using decrRef() as it is no more needed.
+ * delete this mesh using decrRef() as it is no more needed.
*/
MEDCouplingUMesh *MEDCouplingUMesh::deepCopy() const
{
* \param [in] recDeepCpy - if \a true, the copy is deep, else all data arrays of \a
* this mesh are shared by the new mesh.
* \return MEDCouplingUMesh * - a new instance of MEDCouplingMesh. The caller is to
- * delete this mesh using decrRef() as it is no more needed.
+ * delete this mesh using decrRef() as it is no more needed.
*/
MEDCouplingUMesh *MEDCouplingUMesh::clone(bool recDeepCpy) const
{
/*!
* This method behaves mostly like MEDCouplingUMesh::deepCopy method, except that only nodal connectivity arrays are deeply copied.
* The coordinates are shared between \a this and the returned instance.
- *
+ *
* \return MEDCouplingUMesh * - A new object instance holding the copy of \a this (deep for connectivity, shallow for coordiantes)
* \sa MEDCouplingUMesh::deepCopy
*/
}
/*!
- * Allocates memory to store an estimation of the given number of cells.
+ * Allocates memory to store an estimation of the given number of cells.
* The closer the estimation to the number of cells effectively inserted, the less need the library requires
* to reallocate memory. If the number of cells to be inserted is not known simply assign 0 to this parameter.
* If a nodal connectivity previously existed before the call of this method, it will be reset.
* \param [in] type - type of cell to add.
* \param [in] size - number of nodes constituting this cell.
* \param [in] nodalConnOfCell - the connectivity of the cell to add.
- *
+ *
* \if ENABLE_EXAMPLES
* \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
* \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
/*!
* Compacts data arrays to release unused memory. This method is to be called after
* finishing cell insertion using \a this->insertNextCell().
- *
+ *
* \if ENABLE_EXAMPLES
* \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
* \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
* having the same geometric type. So a same geometric type can appear more than once if the cells are not sorted per geometric type.
*
* \throw if connectivity in \a this is not correctly defined.
- *
+ *
* \sa MEDCouplingMesh::getAllGeoTypes
*/
std::vector<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getAllGeoTypesSorted() const
MEDCouplingPointSet::checkFastEquivalWith(other,prec);
const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
if(!otherC)
- throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkFastEquivalWith : Two meshes are not not unstructured !");
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkFastEquivalWith : Two meshes are not not unstructured !");
}
/*!
* \param [in,out] revNodalIndx - an array, of length \a this->getNumberOfNodes() + 1,
* dividing cell ids in \a revNodal into groups each referring to one
* node. Its every element (except the last one) is an index pointing to the
- * first id of a group of cells. For example cells sharing the node #1 are
- * described by following range of indices:
+ * first id of a group of cells. For example cells sharing the node #1 are
+ * described by following range of indices:
* [ \a revNodalIndx[1], \a revNodalIndx[2] ) and the cell ids are
* \a revNodal[ \a revNodalIndx[1] ], \a revNodal[ \a revNodalIndx[1] + 1], ...
* Number of cells sharing the *i*-th node is
* \a revNodalIndx[ *i*+1 ] - \a revNodalIndx[ *i* ].
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
- *
+ *
* \if ENABLE_EXAMPLES
* \ref cpp_mcumesh_getReverseNodalConnectivity "Here is a C++ example".<br>
* \ref py_mcumesh_getReverseNodalConnectivity "Here is a Python example".
checkFullyDefined();
int nbOfNodes(getNumberOfNodes());
int *revNodalIndxPtr=(int *)malloc((nbOfNodes+1)*sizeof(int));
- revNodalIndx->useArray(revNodalIndxPtr,true,C_DEALLOC,nbOfNodes+1,1);
+ revNodalIndx->useArray(revNodalIndxPtr,true,DeallocType::C_DEALLOC,nbOfNodes+1,1);
std::fill(revNodalIndxPtr,revNodalIndxPtr+nbOfNodes+1,0);
const int *conn(_nodal_connec->begin()),*connIndex(_nodal_connec_index->begin());
int nbOfCells(getNumberOfCells()),nbOfEltsInRevNodal(0);
}
std::transform(revNodalIndxPtr+1,revNodalIndxPtr+nbOfNodes+1,revNodalIndxPtr,revNodalIndxPtr+1,std::plus<int>());
int *revNodalPtr=(int *)malloc((nbOfEltsInRevNodal)*sizeof(int));
- revNodal->useArray(revNodalPtr,true,C_DEALLOC,nbOfEltsInRevNodal,1);
+ revNodal->useArray(revNodalPtr,true,DeallocType::C_DEALLOC,nbOfEltsInRevNodal,1);
std::fill(revNodalPtr,revNodalPtr+nbOfEltsInRevNodal,-1);
for(int eltId=0;eltId<nbOfCells;eltId++)
{
* returned. The arrays \a desc and \a descIndx (\ref numbering-indirect) describe the descending connectivity,
* i.e. enumerate cells of the result mesh bounding each cell of \a this mesh. The
* arrays \a revDesc and \a revDescIndx (\ref numbering-indirect) describe the reverse descending connectivity,
- * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
+ * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
* \warning For speed reasons, this method does not check if node ids in the nodal
* connectivity correspond to the size of node coordinates array.
* \warning Cells of the result mesh are \b not sorted by geometric type, hence,
* \throw If the nodal connectivity of cells is node defined.
* \throw If \a desc == NULL || \a descIndx == NULL || \a revDesc == NULL || \a
* revDescIndx == NULL.
- *
+ *
* \if ENABLE_EXAMPLES
* \ref cpp_mcumesh_buildDescendingConnectivity "Here is a C++ example".<br>
* \ref py_mcumesh_buildDescendingConnectivity "Here is a Python example".
* cell with id #0 can't be negative, the array \a desc returns ids in FORTRAN mode,
* i.e. cell ids are one-based.
* Arrays \a revDesc and \a revDescIndx (\ref numbering-indirect) describe the reverse descending connectivity,
- * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
+ * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
* \warning For speed reasons, this method does not check if node ids in the nodal
* connectivity correspond to the size of node coordinates array.
* \warning Cells of the result mesh are \b not sorted by geometric type, hence,
* \throw If the nodal connectivity of cells is node defined.
* \throw If \a desc == NULL || \a descIndx == NULL || \a revDesc == NULL || \a
* revDescIndx == NULL.
- *
+ *
* \if ENABLE_EXAMPLES
* \ref cpp_mcumesh_buildDescendingConnectivity2 "Here is a C++ example".<br>
* \ref py_mcumesh_buildDescendingConnectivity2 "Here is a Python example".
* The number of tuples is equal to the last values in \b neighborsIndx.
* \param [out] neighborsIdx is an array of size this->getNumberOfCells()+1 newly allocated and should
* be dealt by the caller. This arrays allow to use the first output parameter \b neighbors.
- *
+ *
* \sa MEDCouplingUMesh::computeEnlargedNeighborsOfNodes
*/
void MEDCouplingUMesh::computeNeighborsOfNodes(DataArrayInt *&neighbors, DataArrayInt *&neighborsIdx) const
* Computes enlarged neighbors for each nodes in \a this. The behavior of this method is close to MEDCouplingUMesh::computeNeighborsOfNodes except that the neighborhood of each node is wider here.
* A node j is considered to be in the neighborhood of i if and only if there is a cell in \a this containing in its nodal connectivity both i and j.
* This method is useful to find ghost cells of a part of a mesh with a code based on fields on nodes.
- *
+ *
* \sa MEDCouplingUMesh::computeNeighborsOfNodes
*/
void MEDCouplingUMesh::computeEnlargedNeighborsOfNodes(MCAuto<DataArrayInt> &neighbors, MCAuto<DataArrayInt>& neighborsIdx) const
/*!
* This method expects that spaceDimension is equal to 3 and meshDimension equal to 3.
* This method performs operation only on polyhedrons in \b this. If no polyhedrons exists in \b this, \b this remains unchanged.
- * This method allows to merge if any coplanar 3DSurf cells that may appear in some polyhedrons cells.
+ * This method allows to merge if any coplanar 3DSurf cells that may appear in some polyhedrons cells.
*
- * \param [in] eps is a relative precision that allows to establish if some 3D plane are coplanar or not. This epsilon is used to recenter around origin to have maximal
+ * \param [in] eps is a relative precision that allows to establish if some 3D plane are coplanar or not. This epsilon is used to recenter around origin to have maximal
* precision.
*/
void MEDCouplingUMesh::simplifyPolyhedra(double eps)
* This method returns all node ids used in the connectivity of \b this. The data array returned has to be dealt by the caller.
* The returned node ids are sorted ascendingly. This method is close to MEDCouplingUMesh::getNodeIdsInUse except
* the format of the returned DataArrayInt instance.
- *
+ *
* \return a newly allocated DataArrayInt sorted ascendingly of fetched node ids.
* \sa MEDCouplingUMesh::getNodeIdsInUse, areAllNodesFetched
*/
/*!
* Finds nodes not used in any cell and returns an array giving a new id to every node
* by excluding the unused nodes, for which the array holds -1. The result array is
- * a mapping in "Old to New" mode.
+ * a mapping in "Old to New" mode.
* \param [out] nbrOfNodesInUse - number of node ids present in the nodal connectivity.
* \return DataArrayInt * - a new instance of DataArrayInt. Its length is \a
* this->getNumberOfNodes(). It holds for each node of \a this mesh either -1
* if the node is unused or a new id else. The caller is to delete this
- * array using decrRef() as it is no more needed.
+ * array using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
* \throw If the nodal connectivity includes an invalid id.
* For each cell in \b this the number of nodes constituting cell is computed.
* For each polyhedron cell, the sum of the number of nodes of each face constituting polyhedron cell is returned.
* So for pohyhedrons some nodes can be counted several times in the returned result.
- *
+ *
* \return a newly allocated array
* \sa MEDCouplingUMesh::computeEffectiveNbOfNodesPerCell
*/
/*!
* This method returns a newly allocated array containing this->getNumberOfCells() tuples and 1 component.
* For each cell in \b this the number of faces constituting (entity of dimension this->getMeshDimension()-1) cell is computed.
- *
+ *
* \return a newly allocated array
*/
DataArrayInt *MEDCouplingUMesh::computeNbOfFacesPerCell() const
/*!
* Removes unused nodes (the node coordinates array is shorten) and returns an array
* mapping between new and old node ids in "Old to New" mode. -1 values in the returned
- * array mean that the corresponding old node is no more used.
+ * array mean that the corresponding old node is no more used.
* \return DataArrayInt * - a new instance of DataArrayInt of length \a
* this->getNumberOfNodes() before call of this method. The caller is to
- * delete this array using decrRef() as it is no more needed.
+ * delete this array using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
* \throw If the nodal connectivity includes an invalid id.
* \param [out] commonCellsArr common cells ids (\ref numbering-indirect)
* \param [out] commonCellsIArr common cells ids (\ref numbering-indirect)
* \return the correspondence array old to new in a newly allocated array.
- *
+ *
*/
void MEDCouplingUMesh::findCommonCells(int compType, int startCellId, DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr) const
{
* than \a this->getNumberOfCells() in the returned array means that there is no
* corresponding cell in \a this mesh.
* It is expected that \a this and \a other meshes share the same node coordinates
- * array, if it is not so an exception is thrown.
+ * array, if it is not so an exception is thrown.
* \param [in] other - the mesh to compare with.
* \param [in] compType - specifies a cell comparison technique. For meaning of its
* valid values [0,1,2], see zipConnectivityTraducer().
* Build a sub part of \b this lying or not on the same coordinates than \b this (regarding value of \b keepCoords).
* By default coordinates are kept. This method is close to MEDCouplingUMesh::buildPartOfMySelf except that here input
* cellIds is not given explicitly but by a range python like.
- *
+ *
* \param start
* \param end
* \param step
* \param keepCoords that specifies if you want or not to keep coords as this or zip it (see MEDCoupling::MEDCouplingUMesh::zipCoords). If true zipCoords is \b NOT called, if false, zipCoords is called.
* \return a newly allocated
- *
+ *
* \warning This method modifies can generate an unstructured mesh whose cells are not sorted by geometric type order.
* In view of the MED file writing, a renumbering of cells of returned unstructured mesh (using MEDCouplingUMesh::sortCellsInMEDFileFrmt) should be necessary.
*/
* array of \a this mesh, else "free" nodes are removed from the result mesh
* by calling zipCoords().
* \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is
- * to delete this mesh using decrRef() as it is no more needed.
+ * to delete this mesh using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
* \throw If any cell id in the array \a begin is not valid.
MCAuto<DataArrayInt> arrOutAuto(arrOut),arrIOutAuto(arrIOut);
setConnectivity(arrOut,arrIOut,true);
}
-}
+}
/*!
* specified node ids and the value of \a fullyIn parameter. If \a fullyIn ==\c true, a
* cell is copied if its all nodes are in the array \a begin of node ids. If \a fullyIn
* ==\c false, a cell is copied if any its node is in the array of node ids. The
- * created mesh shares the node coordinates array with \a this mesh.
+ * created mesh shares the node coordinates array with \a this mesh.
* \param [in] begin - the array of node ids.
* \param [in] end - a pointer to the (last+1)-th element of \a begin.
* \param [in] fullyIn - if \c true, then cells whose all nodes are in the
* array \a begin are added, else cells whose any node is in the
* array \a begin are added.
* \return MEDCouplingUMesh * - new instance of MEDCouplingUMesh. The caller is
- * to delete this mesh using decrRef() as it is no more needed.
+ * to delete this mesh using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
* \throw If any node id in \a begin is not valid.
* array of \a this mesh, else "free" nodes are removed from the result mesh
* by calling zipCoords().
* \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is
- * to delete this mesh using decrRef() as it is no more needed.
+ * to delete this mesh using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
*
/*!
* This method returns a newly created DataArrayInt instance containing ids of cells located in boundary.
* A cell is detected to be on boundary if it contains one or more than one face having only one father.
- * This method makes the assumption that \a this is fully defined (coords,connectivity). If not an exception will be thrown.
+ * This method makes the assumption that \a this is fully defined (coords,connectivity). If not an exception will be thrown.
*/
DataArrayInt *MEDCouplingUMesh::findCellIdsOnBoundary() const
{
/*!
* This method computes the skin of \b this. That is to say the consituting meshdim-1 mesh is built and only the boundary subpart is
* returned. This subpart of meshdim-1 mesh is built using meshdim-1 cells in it shared only one cell in \b this.
- *
+ *
* \return a newly allocated mesh lying on the same coordinates than \b this. The caller has to deal with returned mesh.
*/
MEDCouplingUMesh *MEDCouplingUMesh::computeSkin() const
/*!
* This method operates a modification of the connectivity and coords in \b this.
- * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
+ * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
* its ids will be modified to id this->getNumberOfNodes()+std::distance(nodeIdsToDuplicateBg,std::find(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,id)).
* More explicitly the renumber array in nodes is not explicitly given in old2new to avoid to build a big array of renumbering whereas typically few node ids needs to be
* renumbered. The node id nodeIdsToDuplicateBg[0] will have id this->getNumberOfNodes()+0, node id nodeIdsToDuplicateBg[1] will have id this->getNumberOfNodes()+1,
* node id nodeIdsToDuplicateBg[2] will have id this->getNumberOfNodes()+2...
- *
+ *
* As a consequence nodal connectivity array length will remain unchanged by this method, and nodal connectivity index array will remain unchanged by this method.
- *
+ *
* \param [in] nodeIdsToDuplicateBg begin of node ids (included) to be duplicated in connectivity only
* \param [in] nodeIdsToDuplicateEnd end of node ids (excluded) to be duplicated in connectivity only
*/
*/
void MEDCouplingUMesh::renumberNodesInConn(const INTERP_KERNEL::HashMap<int,int>& newNodeNumbersO2N)
{
- checkConnectivityFullyDefined();
- int *conn(getNodalConnectivity()->getPointer());
- const int *connIndex(getNodalConnectivityIndex()->getConstPointer());
- int nbOfCells(getNumberOfCells());
- for(int i=0;i<nbOfCells;i++)
- for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
- {
- int& node=conn[iconn];
- if(node>=0)//avoid polyhedron separator
- {
- INTERP_KERNEL::HashMap<int,int>::const_iterator it(newNodeNumbersO2N.find(node));
- if(it!=newNodeNumbersO2N.end())
- {
- node=(*it).second;
- }
- else
- {
- std::ostringstream oss; oss << "MEDCouplingUMesh::renumberNodesInConn(map) : presence in connectivity for cell #" << i << " of node #" << node << " : Not in map !";
- throw INTERP_KERNEL::Exception(oss.str());
- }
- }
- }
- _nodal_connec->declareAsNew();
- updateTime();
+ this->renumberNodesInConnT< INTERP_KERNEL::HashMap<int,int> >(newNodeNumbersO2N);
+}
+
+/*!
+ * Same than renumberNodesInConn(const int *) except that here the format of old-to-new traducer is using map instead
+ * of array. This method is dedicated for renumbering from a big set of nodes the a tiny set of nodes which is the case during extraction
+ * of a big mesh.
+ */
+void MEDCouplingUMesh::renumberNodesInConn(const std::map<int,int>& newNodeNumbersO2N)
+{
+ this->renumberNodesInConnT< std::map<int,int> >(newNodeNumbersO2N);
}
/*!
* This method is a generalization of shiftNodeNumbersInConn().
* \warning This method performs no check of validity of new ids. **Use it with care !**
* \param [in] newNodeNumbersO2N - a permutation array, of length \a
- * this->getNumberOfNodes(), in "Old to New" mode.
+ * this->getNumberOfNodes(), in "Old to New" mode.
* See \ref numbering for more info on renumbering modes.
* \throw If the nodal connectivity of cells is not defined.
*
* This method renumbers nodes \b in \b connectivity \b only \b without \b any \b reference \b to \b coords.
* This method performs no check on the fact that new coordinate ids are valid. \b Use \b it \b with \b care !
* This method is an specialization of \ref MEDCoupling::MEDCouplingUMesh::renumberNodesInConn "renumberNodesInConn method".
- *
+ *
* \param [in] delta specifies the shift size applied to nodeId in nodal connectivity in \b this.
*/
void MEDCouplingUMesh::shiftNodeNumbersInConn(int delta)
/*!
* This method operates a modification of the connectivity in \b this.
* Coordinates are \b NOT considered here and will remain unchanged by this method. this->_coords can ever been null for the needs of this method.
- * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
+ * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
* its ids will be modified to id offset+std::distance(nodeIdsToDuplicateBg,std::find(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,id)).
* More explicitly the renumber array in nodes is not explicitly given in old2new to avoid to build a big array of renumbering whereas typically few node ids needs to be
* renumbered. The node id nodeIdsToDuplicateBg[0] will have id offset+0, node id nodeIdsToDuplicateBg[1] will have id offset+1,
* node id nodeIdsToDuplicateBg[2] will have id offset+2...
- *
+ *
* As a consequence nodal connectivity array length will remain unchanged by this method, and nodal connectivity index array will remain unchanged by this method.
* As an another consequense after the call of this method \b this can be transiently non cohrent.
- *
+ *
* \param [in] nodeIdsToDuplicateBg begin of node ids (included) to be duplicated in connectivity only
* \param [in] nodeIdsToDuplicateEnd end of node ids (excluded) to be duplicated in connectivity only
- * \param [in] offset the offset applied to all node ids in connectivity that are in [ \a nodeIdsToDuplicateBg, \a nodeIdsToDuplicateEnd ).
+ * \param [in] offset the offset applied to all node ids in connectivity that are in [ \a nodeIdsToDuplicateBg, \a nodeIdsToDuplicateEnd ).
*/
void MEDCouplingUMesh::duplicateNodesInConn(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd, int offset)
{
* If 'check' equals false the method will not check the content of [ \a old2NewBg ; \a old2NewEnd ).
* To avoid any throw of SIGSEGV when 'check' equals false, the elements in [ \a old2NewBg ; \a old2NewEnd ) should be unique and
* should be contained in[0;this->getNumberOfCells()).
- *
+ *
* \param [in] old2NewBg is expected to be a dynamically allocated pointer of size at least equal to this->getNumberOfCells()
* \param check
*/
//
const int *conn=_nodal_connec->getConstPointer();
const int *connI=_nodal_connec_index->getConstPointer();
- MCAuto<DataArrayInt> o2n=DataArrayInt::New(); o2n->useArray(array,false,C_DEALLOC,nbCells,1);
+ MCAuto<DataArrayInt> o2n=DataArrayInt::New(); o2n->useArray(array,false,DeallocType::C_DEALLOC,nbCells,1);
MCAuto<DataArrayInt> n2o=o2n->invertArrayO2N2N2O(nbCells);
const int *n2oPtr=n2o->begin();
MCAuto<DataArrayInt> newConn=DataArrayInt::New();
* Finds cells whose bounding boxes intersect a given bounding box.
* \param [in] bbox - an array defining the bounding box via coordinates of its
* extremum points in "no interlace" mode, i.e. xMin, xMax, yMin, yMax, zMin,
- * zMax (if in 3D).
+ * zMax (if in 3D).
* \param [in] eps - a factor used to increase size of the bounding box of cell
* before comparing it with \a bbox. This factor is multiplied by the maximal
* extent of the bounding box of cell to produce an addition to this bounding box.
* \return DataArrayInt * - a new instance of DataArrayInt holding ids for found
* cells. The caller is to delete this array using decrRef() as it is no more
- * needed.
+ * needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
*
* This method returns an instance with all arrays allocated (connectivity, connectivity index, coordinates)
* but with length of these arrays set to 0. It allows to define an "empty" mesh (with nor cells nor nodes but compliant with
* some algos).
- *
+ *
* This method expects that \a this has a mesh dimension set and higher or equal to 0. If not an exception will be thrown.
* This method analyzes the 3 arrays of \a this. For each the following behaviour is done : if the array is null a newly one is created
* with number of tuples set to 0, if not the array is taken as this in the returned instance.
* \param [in] begin - an array of cell ids of interest.
* \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
* \return std::set<INTERP_KERNEL::NormalizedCellType> - a set of enumeration items
- * describing the cell types.
+ * describing the cell types.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
* \sa getAllGeoTypes()
/*!
* Defines the nodal connectivity using given connectivity arrays in \ref numbering-indirect format.
* Optionally updates
- * a set of types of cells constituting \a this mesh.
+ * a set of types of cells constituting \a this mesh.
* This method is for advanced users having prepared their connectivity before. For
* more info on using this method see \ref MEDCouplingUMeshAdvBuild.
- * \param [in] conn - the nodal connectivity array.
+ * \param [in] conn - the nodal connectivity array.
* \param [in] connIndex - the nodal connectivity index array.
* \param [in] isComputingTypes - if \c true, the set of types constituting \a this
* mesh is updated.
/*!
- * Returns a number of cells constituting \a this mesh.
+ * Returns a number of cells constituting \a this mesh.
* \return int - the number of cells in \a this mesh.
* \throw If the nodal connectivity of cells is not defined.
*/
std::size_t MEDCouplingUMesh::getNumberOfCells() const
-{
+{
if(_nodal_connec_index)
return _nodal_connec_index->getNumberOfTuples()-1;
else
* \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
* \return DataArrayDouble * - a new instance of DataArrayDouble. The caller is to
* delete this array using decrRef() as it is no more needed.
- *
+ *
* \if ENABLE_EXAMPLES
* \ref cpp_mcumesh_getPartMeasureField "Here is a C++ example".<br>
* \ref py_mcumesh_getPartMeasureField "Here is a Python example".
* mesh. The returned normal vectors to each cell have a norm2 equal to 1.
* The computed vectors have <em> this->getMeshDimension()+1 </em> components
* and are normalized.
- * <br> \a this can be either
- * - a 2D mesh in 2D or 3D space or
+ * <br> \a this can be either
+ * - a 2D mesh in 2D or 3D space or
* - an 1D mesh in 2D space.
- *
+ *
* \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
* cells and one time. The caller is to delete this field using decrRef() as
* it is no more needed.
* Returns a new MEDCouplingFieldDouble holding normal vectors to specified cells of
* \a this mesh. The computed vectors have <em> this->getMeshDimension()+1 </em> components
* and are normalized.
- * <br> \a this can be either
- * - a 2D mesh in 2D or 3D space or
+ * <br> \a this can be either
+ * - a 2D mesh in 2D or 3D space or
* - an 1D mesh in 2D space.
- *
+ *
* This method avoids building explicitly a part of \a this mesh to perform the work.
* \param [in] begin - an array of cell ids of interest.
* \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
* using decrRef() as it is no more needed.
* \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This mesh does
* not share the node coordinates array with \a this mesh. The caller is to
- * delete this mesh using decrRef() as it is no more needed.
+ * delete this mesh using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
* \throw If \a this->getMeshDimension() != 3 or \a this->getSpaceDimension() != 3.
* \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This is an 1D
* mesh in 3D space. This mesh does not share the node coordinates array with
* \a this mesh. The caller is to delete this mesh using decrRef() as it is
- * no more needed.
+ * no more needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
* \throw If \a this->getMeshDimension() != 2 or \a this->getSpaceDimension() != 3.
}
/*!
- * This method computes the distance from a point \a pt to \a this and the first \a cellId in \a this corresponding to the returned distance.
+ * This method computes the distance from a point \a pt to \a this and the first \a cellId in \a this corresponding to the returned distance.
* \a this is expected to be a mesh so that its space dimension is equal to its
* mesh dimension + 1. Furthermore only mesh dimension 1 and 2 are supported for the moment.
* Distance from \a ptBg to \a ptEnd is expected to be equal to the space dimension. \a this is also expected to be fully defined (connectivity and coordinates).
if((int)std::distance(ptBg,ptEnd)!=spaceDim)
{ std::ostringstream oss; oss << "MEDCouplingUMesh::distanceToPoint : input point has to have dimension equal to the space dimension of this (" << spaceDim << ") !"; throw INTERP_KERNEL::Exception(oss.str()); }
DataArrayInt *ret1=0;
- MCAuto<DataArrayDouble> pts=DataArrayDouble::New(); pts->useArray(ptBg,false,C_DEALLOC,1,spaceDim);
+ MCAuto<DataArrayDouble> pts=DataArrayDouble::New(); pts->useArray(ptBg,false,DeallocType::C_DEALLOC,1,spaceDim);
MCAuto<DataArrayDouble> ret0=distanceToPoints(pts,ret1);
MCAuto<DataArrayInt> ret1Safe(ret1);
cellId=*ret1Safe->begin();
/*!
* This method computes the distance from each point of points serie \a pts (stored in a DataArrayDouble in which each tuple represents a point)
- * to \a this and the first \a cellId in \a this corresponding to the returned distance.
+ * to \a this and the first \a cellId in \a this corresponding to the returned distance.
* WARNING, if there is some orphan nodes in \a this (nodes not fetched by any cells in \a this ( see MEDCouplingUMesh::zipCoords ) ) these nodes will ** not ** been taken
* into account in this method. Only cells and nodes lying on them are considered in the algorithm (even if one of these orphan nodes is closer than returned distance).
* A user that needs to consider orphan nodes should invoke DataArrayDouble::minimalDistanceTo method on the coordinates array of \a this.
- *
+ *
* \a this is expected to be a mesh so that its space dimension is equal to its
* mesh dimension + 1. Furthermore only mesh dimension 1 and 2 are supported for the moment.
* Number of components of \a pts is expected to be equal to the space dimension. \a this is also expected to be fully defined (connectivity and coordinates).
/// @endcond
/*!
- * Finds cells in contact with a ball (i.e. a point with precision).
+ * Finds cells in contact with a ball (i.e. a point with precision).
* For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
* If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
*
* \warning This method is suitable if the caller intends to evaluate only one
* point, for more points getCellsContainingPoints() is recommended as it is
- * faster.
+ * faster.
* \param [in] pos - array of coordinates of the ball central point.
* \param [in] eps - ball radius.
* \return int - a smallest id of cells being in contact with the ball, -1 in case
* If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
* \warning This method is suitable if the caller intends to evaluate only one
* point, for more points getCellsContainingPoints() is recommended as it is
- * faster.
+ * faster.
* \param [in] pos - array of coordinates of the ball central point.
* \param [in] eps - ball radius.
* \param [out] elts - vector returning ids of the found cells. It is cleared
elts.clear(); elts.insert(elts.end(),eltsUg->begin(),eltsUg->end());
}
+void MEDCouplingUMesh::getCellsContainingPointsZeAlg(const double *pos, int nbOfPoints, double eps,
+ MCAuto<DataArrayInt>& elts, MCAuto<DataArrayInt>& eltsIndex,
+ std::function<bool(INTERP_KERNEL::NormalizedCellType,int)> sensibilityTo2DQuadraticLinearCellsFunc) const
+{
+ int spaceDim(getSpaceDimension()),mDim(getMeshDimension());
+ if(spaceDim==3)
+ {
+ if(mDim==3)
+ {
+ const double *coords=_coords->getConstPointer();
+ getCellsContainingPointsAlg<3>(coords,pos,nbOfPoints,eps,elts,eltsIndex,sensibilityTo2DQuadraticLinearCellsFunc);
+ }
+ else
+ throw INTERP_KERNEL::Exception("For spaceDim==3 only meshDim==3 implemented for getelementscontainingpoints !");
+ }
+ else if(spaceDim==2)
+ {
+ if(mDim==2)
+ {
+ const double *coords=_coords->getConstPointer();
+ getCellsContainingPointsAlg<2>(coords,pos,nbOfPoints,eps,elts,eltsIndex,sensibilityTo2DQuadraticLinearCellsFunc);
+ }
+ else
+ throw INTERP_KERNEL::Exception("For spaceDim==2 only meshDim==2 implemented for getelementscontainingpoints !");
+ }
+ else if(spaceDim==1)
+ {
+ if(mDim==1)
+ {
+ const double *coords=_coords->getConstPointer();
+ getCellsContainingPointsAlg<1>(coords,pos,nbOfPoints,eps,elts,eltsIndex,sensibilityTo2DQuadraticLinearCellsFunc);
+ }
+ else
+ throw INTERP_KERNEL::Exception("For spaceDim==1 only meshDim==1 implemented for getelementscontainingpoints !");
+ }
+ else
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellsContainingPoints : not managed for mdim not in [1,2,3] !");
+}
+
/*!
* Finds cells in contact with several balls (i.e. points with precision).
* This method is an extension of getCellContainingPoint() and
* If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
* \param [in] pos - an array of coordinates of points in full interlace mode :
* X0,Y0,Z0,X1,Y1,Z1,... Size of the array must be \a
- * this->getSpaceDimension() * \a nbOfPoints
+ * this->getSpaceDimension() * \a nbOfPoints
* \param [in] nbOfPoints - number of points to locate within \a this mesh.
* \param [in] eps - radius of balls (i.e. the precision).
* \param [out] elts - vector returning ids of found cells.
void MEDCouplingUMesh::getCellsContainingPoints(const double *pos, int nbOfPoints, double eps,
MCAuto<DataArrayInt>& elts, MCAuto<DataArrayInt>& eltsIndex) const
{
- int spaceDim=getSpaceDimension();
- int mDim=getMeshDimension();
- if(spaceDim==3)
- {
- if(mDim==3)
- {
- const double *coords=_coords->getConstPointer();
- getCellsContainingPointsAlg<3>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
- }
- /*else if(mDim==2)
- {
+ auto yesImSensibleTo2DQuadraticLinearCellsFunc([](INTERP_KERNEL::NormalizedCellType ct, int mdim) { return INTERP_KERNEL::CellModel::GetCellModel(ct).isQuadratic() && mdim == 2; } );
+ this->getCellsContainingPointsZeAlg(pos,nbOfPoints,eps,elts,eltsIndex,yesImSensibleTo2DQuadraticLinearCellsFunc);
+}
- }*/
- else
- throw INTERP_KERNEL::Exception("For spaceDim==3 only meshDim==3 implemented for getelementscontainingpoints !");
- }
- else if(spaceDim==2)
- {
- if(mDim==2)
- {
- const double *coords=_coords->getConstPointer();
- getCellsContainingPointsAlg<2>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
- }
- else
- throw INTERP_KERNEL::Exception("For spaceDim==2 only meshDim==2 implemented for getelementscontainingpoints !");
- }
- else if(spaceDim==1)
- {
- if(mDim==1)
- {
- const double *coords=_coords->getConstPointer();
- getCellsContainingPointsAlg<1>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
- }
- else
- throw INTERP_KERNEL::Exception("For spaceDim==1 only meshDim==1 implemented for getelementscontainingpoints !");
- }
- else
- throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellsContainingPoints : not managed for mdim not in [1,2,3] !");
+/*!
+ * Behaves like MEDCouplingMesh::getCellsContainingPoints for cells in \a this that are linear.
+ * For quadratic cells in \a this, this method behaves by just considering linear part of cells.
+ * This method is here only for backward compatibility (interpolation GaussPoints to GaussPoints).
+ *
+ * \sa MEDCouplingUMesh::getCellsContainingPoints, MEDCouplingRemapper::prepareNotInterpKernelOnlyGaussGauss
+ */
+void MEDCouplingUMesh::getCellsContainingPointsLinearPartOnlyOnNonDynType(const double *pos, int nbOfPoints, double eps, MCAuto<DataArrayInt>& elts, MCAuto<DataArrayInt>& eltsIndex) const
+{
+ auto noImNotSensibleTo2DQuadraticLinearCellsFunc([](INTERP_KERNEL::NormalizedCellType,int) { return false; } );
+ this->getCellsContainingPointsZeAlg(pos,nbOfPoints,eps,elts,eltsIndex,noImNotSensibleTo2DQuadraticLinearCellsFunc);
}
/*!
*
* This method expects that space dimension is equal to 2 and mesh dimension is equal to 2 too. If it is not the case an INTERP_KERNEL::Exception will be thrown.
* This method works only for linear 2D cells. If there is any of non linear cells (INTERP_KERNEL::NORM_QUAD8 for example) an INTERP_KERNEL::Exception will be thrown too.
- *
+ *
* For each 2D linear cell in \b this, this method builds the convex envelop (or the convex hull) of the current cell.
* This convex envelop is computed using Jarvis march algorithm.
* The coordinates and the number of cells of \b this remain unchanged on invocation of this method.
* the 3 preceding points of the 1D mesh. The center of the arc is the center of rotation for each level, the rotation is done
* along an axis normal to the plane containing the arc, and finally the angle of rotation is defined by the first two points on the
* arc.
- * \return an unstructured mesh with meshDim==3 and spaceDim==3. The returned mesh has the same coords than \a this.
+ * \return an unstructured mesh with meshDim==3 and spaceDim==3. The returned mesh has the same coords than \a this.
*/
MEDCouplingUMesh *MEDCouplingUMesh::buildExtrudedMesh(const MEDCouplingUMesh *mesh1D, int policy)
{
* or to INTERP_KERNEL::NORM_TRI7 if \a conversionType is equal to 1. All non linear cells and polyhedron in \a this are let untouched.
* Contrary to MEDCouplingUMesh::convertQuadraticCellsToLinear method, the coordinates in \a this can be become bigger. All created nodes will be put at the
* end of the existing coordinates.
- *
+ *
* \param [in] conversionType specifies the type of conversion expected. Only 0 (default) and 1 are supported presently. 0 those that creates the 'most' simple
* corresponding quadratic cells. 1 is those creating the 'most' complex.
* \return a newly created DataArrayInt instance that the caller should deal with containing cell ids of converted cells.
- *
+ *
* \throw if \a this is not fully defined. It throws too if \a conversionType is not in [0,1].
*
* \sa MEDCouplingUMesh::convertQuadraticCellsToLinear
throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2D : mesh dimension must be in [1,2] !");
}
}
-/*!
- * Tessellates \a this 1D mesh in 2D space by dividing not straight quadratic edges.
- * \warning This method can lead to a huge amount of nodes if \a eps is very low.
- * \param [in] eps - specifies the maximal angle (in radian) between 2 sub-edges of
- * a sub-divided edge.
- * \throw If the coordinates array is not set.
- * \throw If the nodal connectivity of cells is not defined.
- * \throw If \a this->getMeshDimension() != 1.
- * \throw If \a this->getSpaceDimension() != 2.
- */
#if 0
/*!
*
* \throw If \a policy is 0 or 1 and \a this->getMeshDimension() != 2.
* \throw If \a policy is INTERP_KERNEL::PLANAR_FACE_5 or INTERP_KERNEL::PLANAR_FACE_6
- * and \a this->getMeshDimension() != 3.
+ * and \a this->getMeshDimension() != 3.
* \throw If \a policy is not one of the four discussed above.
* \throw If the nodal connectivity of cells is not defined.
* \sa MEDCouplingUMesh::tetrahedrize, MEDCoupling1SGTUMesh::sortHexa8EachOther
int nbOfCells=getNumberOfCells();
MCAuto<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(0,1);
if(nbOfCells<1)
- return ret;
+ return ret.retn();
int initMeshLgth=getNodalConnectivityArrayLen();
int *conn=_nodal_connec->getPointer();
int *index=_nodal_connec_index->getPointer();
return ret.retn();
}
+/*!
+ * This method remove null 1D cells from \a this. A 1D cell is considered null if start node is equal to end node.
+ * Only connectivity is considered here.
+ */
+bool MEDCouplingUMesh::removeDegenerated1DCells()
+{
+ checkConnectivityFullyDefined();
+ if(getMeshDimension()!=1)
+ throw INTERP_KERNEL::Exception("MEDCouplingUMesh::removeDegenerated1DCells works on umeshes with meshdim equals to 1 !");
+ std::size_t nbCells(getNumberOfCells()),newSize(0),newSize2(0);
+ const int *conn(getNodalConnectivity()->begin()),*conni(getNodalConnectivityIndex()->begin());
+ {
+ for(std::size_t i=0;i<nbCells;i++)
+ {
+ INTERP_KERNEL::NormalizedCellType ct((INTERP_KERNEL::NormalizedCellType)conn[conni[i]]);
+ if(ct==INTERP_KERNEL::NORM_SEG2 || ct==INTERP_KERNEL::NORM_SEG3)
+ {
+ if(conn[conni[i]+1]!=conn[conni[i]+2])
+ {
+ newSize++;
+ newSize2+=conni[i+1]-conni[i];
+ }
+ }
+ else
+ {
+ std::ostringstream oss; oss << "MEDCouplingUMesh::removeDegenerated1DCells : cell #" << i << " in this is not of type SEG2/SEG3 !";
+ throw INTERP_KERNEL::Exception(oss.str());
+ }
+ }
+ }
+ if(newSize==nbCells)//no cells has been removed -> do nothing
+ return false;
+ MCAuto<DataArrayInt> newConn(DataArrayInt::New()),newConnI(DataArrayInt::New()); newConnI->alloc(newSize+1,1); newConn->alloc(newSize2,1);
+ int *newConnPtr(newConn->getPointer()),*newConnIPtr(newConnI->getPointer()); newConnIPtr[0]=0;
+ for(std::size_t i=0;i<nbCells;i++)
+ {
+ if(conn[conni[i]+1]!=conn[conni[i]+2])
+ {
+ newConnIPtr[1]=newConnIPtr[0]+conni[i+1]-conni[i];
+ newConnPtr=std::copy(conn+conni[i],conn+conni[i+1],newConnPtr);
+ newConnIPtr++;
+ }
+ }
+ setConnectivity(newConn,newConnI,true);
+ return true;
+}
/*!
* Finds incorrectly oriented cells of this 2D mesh in 3D space.
* A cell is considered to be oriented correctly if an angle between its
* normal vector and a given vector is less than \c PI / \c 2.
* \param [in] vec - 3 components of the vector specifying the correct orientation of
- * cells.
+ * cells.
* \param [in] polyOnly - if \c true, only polygons are checked, else, all cells are
* checked.
* \param [in,out] cells - a vector returning ids of incorrectly oriented cells. It
/*!
* Reverse connectivity of 2D cells whose orientation is not correct. A cell is
* considered to be oriented correctly if an angle between its normal vector and a
- * given vector is less than \c PI / \c 2.
+ * given vector is less than \c PI / \c 2.
* \param [in] vec - 3 components of the vector specifying the correct orientation of
- * cells.
+ * cells.
* \param [in] polyOnly - if \c true, only polygons are checked, else, all cells are
* checked.
* \throw If \a this->getMeshDimension() != 2.
/*!
* Tries to fix connectivity of polyhedra, so that normal vector of all facets to point
- * out of the cell.
+ * out of the cell.
* \throw If \a this->getMeshDimension() != 3.
* \throw If \a this->getSpaceDimension() != 3.
* \throw If the coordinates array is not set.
}
/*!
- * This method invert orientation of all cells in \a this.
+ * This method invert orientation of all cells in \a this.
* After calling this method the absolute value of measure of cells in \a this are the same than before calling.
* This method only operates on the connectivity so coordinates are not touched at all.
*/
* pointing out of cell.
* \return DataArrayInt * - a new instance of DataArrayInt holding ids of fixed
* cells. The caller is to delete this array using decrRef() as it is no more
- * needed.
+ * needed.
* \throw If \a this->getMeshDimension() != 3.
* \throw If \a this->getSpaceDimension() != 3.
* \throw If the coordinates array is not set.
* This method is a faster method to correct orientation of all 3D cells in \a this.
* This method works only if \a this is a 3D mesh, that is to say a mesh with mesh dimension 3 and a space dimension 3.
* This method makes the hypothesis that \a this a coherent that is to say MEDCouplingUMesh::checkConsistency should throw no exception.
- *
+ *
* \return a newly allocated int array with one components containing cell ids renumbered to fit the convention of MED (MED file and MEDCoupling)
- * \sa MEDCouplingUMesh::orientCorrectlyPolyhedrons,
+ * \sa MEDCouplingUMesh::orientCorrectlyPolyhedrons,
*/
DataArrayInt *MEDCouplingUMesh::findAndCorrectBadOriented3DCells()
{
* INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4 and INTERP_KERNEL::NORM_TETRA4.
* For a cell of other type an exception is thrown.
* Space dimension of a 2D mesh can be either 2 or 3.
- * The Edge Ratio of a cell \f$t\f$ is:
+ * The Edge Ratio of a cell \f$t\f$ is:
* \f$\frac{|t|_\infty}{|t|_0}\f$,
* where \f$|t|_\infty\f$ and \f$|t|_0\f$ respectively denote the greatest and
* the smallest edge lengths of \f$t\f$.
* \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
* cells and one time, lying on \a this mesh. The caller is to delete this
- * field using decrRef() as it is no more needed.
+ * field using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If \a this mesh contains elements of dimension different from the mesh dimension.
* \throw If the connectivity data array has more than one component.
* Space dimension of a 2D mesh can be either 2 or 3.
* \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
* cells and one time, lying on \a this mesh. The caller is to delete this
- * field using decrRef() as it is no more needed.
+ * field using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If \a this mesh contains elements of dimension different from the mesh dimension.
* \throw If the connectivity data array has more than one component.
* \f]
* \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
* cells and one time, lying on \a this mesh. The caller is to delete this
- * field using decrRef() as it is no more needed.
+ * field using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If \a this mesh contains elements of dimension different from the mesh dimension.
* \throw If the connectivity data array has more than one component.
* For a cell of other type an exception is thrown.
* \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
* cells and one time, lying on \a this mesh. The caller is to delete this
- * field using decrRef() as it is no more needed.
+ * field using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If \a this mesh contains elements of dimension different from the mesh dimension.
* \throw If the connectivity data array has more than one component.
/*!
* This method aggregate the bbox of each cell and put it into bbox parameter (xmin,xmax,ymin,ymax,zmin,zmax).
- *
+ *
* \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
* For all other cases this input parameter is ignored.
* \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
- *
+ *
* \throw If \a this is not fully set (coordinates and connectivity).
* \throw If a cell in \a this has no valid nodeId.
* \sa MEDCouplingUMesh::getBoundingBoxForBBTreeFast, MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic
/*!
* This method aggregate the bbox of each cell only considering the nodes constituting each cell and put it into bbox parameter.
* So meshes having quadratic cells the computed bounding boxes can be invalid !
- *
+ *
* \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
- *
+ *
* \throw If \a this is not fully set (coordinates and connectivity).
* \throw If a cell in \a this has no valid nodeId.
*/
* useful for 2D meshes having quadratic cells
* because for this type of cells getBoundingBoxForBBTreeFast method may return invalid bounding boxes (since it just considers
* the two extremities of the arc of circle).
- *
+ *
* \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
* \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
* \throw If \a this is not fully defined.
DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic(double arcDetEps) const
{
checkFullyDefined();
- INTERP_KERNEL::QuadraticPlanarArcDetectionPrecision arcPrec(arcDetEps);
+ INTERP_KERNEL::QuadraticPlanarPrecision arcPrec(arcDetEps);
int spaceDim(getSpaceDimension()),mDim(getMeshDimension()),nbOfCells(getNumberOfCells());
if(spaceDim!=2 || mDim!=2)
else
pol=INTERP_KERNEL::QuadraticPolygon::BuildArcCirclePolygon(nodes);
INTERP_KERNEL::Bounds b; b.prepareForAggregation(); pol->fillBounds(b); delete pol;
- bbox[0]=b.getXMin(); bbox[1]=b.getXMax(); bbox[2]=b.getYMin(); bbox[3]=b.getYMax();
+ bbox[0]=b.getXMin(); bbox[1]=b.getXMax(); bbox[2]=b.getYMin(); bbox[3]=b.getYMax();
}
return ret.retn();
}
* useful for 2D meshes having quadratic cells
* because for this type of cells getBoundingBoxForBBTreeFast method may return invalid bounding boxes (since it just considers
* the two extremities of the arc of circle).
- *
+ *
* \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
* \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
* \throw If \a this is not fully defined.
int spaceDim(getSpaceDimension()),mDim(getMeshDimension()),nbOfCells(getNumberOfCells());
if(spaceDim!=2 || mDim!=1)
throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic : This method should be applied on mesh with mesh dimension equal to 1 and space dimension also equal to 2!");
- INTERP_KERNEL::QuadraticPlanarArcDetectionPrecision arcPrec(arcDetEps);
+ INTERP_KERNEL::QuadraticPlanarPrecision arcPrec(arcDetEps);
MCAuto<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
double *bbox(ret->getPointer());
const double *coords(_coords->begin());
* This method expects that \a this is sorted by types. If not an exception will be thrown.
* This method returns in the same format as code (see MEDCouplingUMesh::checkTypeConsistencyAndContig or MEDCouplingUMesh::splitProfilePerType) how
* \a this is composed in cell types.
- * The returned array is of size 3*n where n is the number of different types present in \a this.
- * For every k in [0,n] ret[3*k+2]==-1 because it has no sense here.
+ * The returned array is of size 3*n where n is the number of different types present in \a this.
+ * For every k in [0,n] ret[3*k+2]==-1 because it has no sense here.
* This parameter is kept only for compatibility with other method listed above.
*/
std::vector<int> MEDCouplingUMesh::getDistributionOfTypes() const
* If it exists k so that 3*k geometric type is not in geometric types of this an exception will be thrown.
* If it exists k so that 3*k geometric type exists but the number of consecutive cell types does not match,
* an exception is thrown too.
- *
+ *
* If all geometric types in \a code are exactly those in \a this null pointer is returned.
- * If it exists a geometric type in \a this \b not in \a code \b no exception is thrown
+ * If it exists a geometric type in \a this \b not in \a code \b no exception is thrown
* and a DataArrayInt instance is returned that the user has the responsibility to deallocate.
*/
DataArrayInt *MEDCouplingUMesh::checkTypeConsistencyAndContig(const std::vector<int>& code, const std::vector<const DataArrayInt *>& idsPerType) const
* This method is the opposite of MEDCouplingUMesh::checkTypeConsistencyAndContig method. Given a list of cells in \a profile it returns a list of sub-profiles sorted by geo type.
* The result is put in the array \a idsPerType. In the returned parameter \a code, foreach i \a code[3*i+2] refers (if different from -1) to a location into the \a idsPerType.
* This method has 1 input \a profile and 3 outputs \a code \a idsInPflPerType and \a idsPerType.
- *
+ *
* \param [in] profile
* \param [out] code is a vector of size 3*n where n is the number of different geometric type in \a this \b reduced to the profile \a profile. \a code has exactly the same semantic than in MEDCouplingUMesh::checkTypeConsistencyAndContig method.
* \param [out] idsInPflPerType is a vector of size of different geometric type in the subpart defined by \a profile of \a this ( equal to \a code.size()/3). For each i,
/*!
* This method is a specialization of MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder method that is called here.
* The geometric type order is specified by MED file.
- *
+ *
* \sa MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder
*/
bool MEDCouplingUMesh::checkConsecutiveCellTypesForMEDFileFrmt() const
/*!
* This method computes for each cell in \a this, the location of the iso barycenter of nodes constituting
- * the cell. Contrary to badly named MEDCouplingUMesh::computeCellCenterOfMass method that returns the center of inertia of the
- *
- * \return a newly allocated DataArrayDouble instance that the caller has to deal with. The returned
+ * the cell. Contrary to badly named MEDCouplingUMesh::computeCellCenterOfMass method that returns the center of inertia of the
+ *
+ * \return a newly allocated DataArrayDouble instance that the caller has to deal with. The returned
* DataArrayDouble instance will have \c this->getNumberOfCells() tuples and \c this->getSpaceDimension() components.
- *
+ *
* \sa MEDCouplingUMesh::computeCellCenterOfMass
* \throw If \a this is not fully defined (coordinates and connectivity)
* \throw If there is presence in nodal connectivity in \a this of node ids not in [0, \c this->getNumberOfNodes() )
/*!
* Returns a new DataArrayDouble holding barycenters of specified cells. The
* barycenter is computed by averaging coordinates of cell nodes. The cells to treat
- * are specified via an array of cell ids.
- * \warning Validity of the specified cell ids is not checked!
+ * are specified via an array of cell ids.
+ * \warning Validity of the specified cell ids is not checked!
* Valid range is [ 0, \a this->getNumberOfCells() ).
* \param [in] begin - an array of cell ids of interest.
* \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
* \return DataArrayDouble * - a new instance of DataArrayDouble, of size ( \a
* end - \a begin ) tuples per \a this->getSpaceDimension() components. The
- * caller is to delete this array using decrRef() as it is no more needed.
+ * caller is to delete this array using decrRef() as it is no more needed.
* \throw If the coordinates array is not set.
* \throw If the nodal connectivity of cells is not defined.
*
* So this method expects that \a this has a spaceDimension equal to 3 and meshDimension equal to 2.
* The computation of the plane equation is done using each time the 3 first nodes of 2D cells.
* This method is useful to detect 2D cells in 3D space that are not coplanar.
- *
+ *
* \return DataArrayDouble * - a new instance of DataArrayDouble having 4 components and a number of tuples equal to number of cells in \a this.
* \throw If spaceDim!=3 or meshDim!=2.
* \throw If connectivity of \a this is invalid.
/*!
* This method expects as input a DataArrayDouble non nul instance 'da' that should be allocated. If not an exception is thrown.
- *
+ *
*/
MEDCouplingUMesh *MEDCouplingUMesh::Build0DMeshFromCoords(DataArrayDouble *da)
{
* the nodal connectivity array. The given meshes **can be of different** mesh
* dimension. This method is particularly useful in MEDLoader context to build a \ref
* MEDCoupling::MEDFileUMesh "MEDFileUMesh" instance that expects that underlying
- * MEDCouplingUMesh'es of different dimension share the same nodal connectivity array.
+ * MEDCouplingUMesh'es of different dimension share the same nodal connectivity array.
* \param [in,out] meshes - a vector of meshes to update.
* \param [in] eps - the precision used to detect coincident nodes (infinite norm).
* \throw If any of \a meshes is NULL.
{
(*it)->renumberNodesInConn(o2n->begin());
(*it)->setCoords(newCoords);
- }
+ }
}
std::size_t i, ip1;
double v[3]={0.,0.,0.};
std::size_t sz=std::distance(begin,end);
- if(isQuadratic)
- sz/=2;
- for(i=0;i<sz;i++)
- {
- v[0]+=coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]+2]-coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]+1];
- v[1]+=coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]]-coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+2];
- v[2]+=coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+1]-coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]];
- }
- double ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
-
- // Try using quadratic points if standard points are degenerated (for example a QPOLYG with two
- // SEG3 forming a circle):
- if (fabs(ret) < INTERP_KERNEL::DEFAULT_ABS_TOL && isQuadratic)
+ if(!isQuadratic)
+ for(i=0;i<sz;i++)
+ {
+ v[0]+=coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]+2]-coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]+1];
+ v[1]+=coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]]-coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+2];
+ v[2]+=coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+1]-coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]];
+ }
+ else
{
- v[0] = 0.0; v[1] = 0.0; v[2] = 0.0;
+ // Use all points if quadratic (taking only linear points might lead to issues if the linearized version of the
+ // polygon is not convex or self-intersecting ... see testCellOrientation4)
+ sz /= 2;
for(std::size_t j=0;j<sz;j++)
{
if (j%2) // current point i is quadratic, next point i+1 is standard
v[1]+=coords[3*begin[i]+2]*coords[3*begin[ip1]]-coords[3*begin[i]]*coords[3*begin[ip1]+2];
v[2]+=coords[3*begin[i]]*coords[3*begin[ip1]+1]-coords[3*begin[i]+1]*coords[3*begin[ip1]];
}
- ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
}
+ double ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
return (ret>0.);
}
throw INTERP_KERNEL::Exception("MEDCouplingUMesh::IsTetra4WellOriented : Tetra4 cell with not 4 nodes ! Call checkConsistency !");
double vec0[3],vec1[3];
const double *pt0=coords+3*begin[0],*pt1=coords+3*begin[1],*pt2=coords+3*begin[2],*pt3=coords+3*begin[3];
- vec0[0]=pt1[0]-pt0[0]; vec0[1]=pt1[1]-pt0[1]; vec0[2]=pt1[2]-pt0[2]; vec1[0]=pt2[0]-pt0[0]; vec1[1]=pt2[1]-pt0[1]; vec1[2]=pt2[2]-pt0[2];
+ vec0[0]=pt1[0]-pt0[0]; vec0[1]=pt1[1]-pt0[1]; vec0[2]=pt1[2]-pt0[2]; vec1[0]=pt2[0]-pt0[0]; vec1[1]=pt2[1]-pt0[1]; vec1[2]=pt2[2]-pt0[2];
return ((vec0[1]*vec1[2]-vec0[2]*vec1[1])*(pt3[0]-pt0[0])+(vec0[2]*vec1[0]-vec0[0]*vec1[2])*(pt3[1]-pt0[1])+(vec0[0]*vec1[1]-vec0[1]*vec1[0])*(pt3[2]-pt0[2]))<0;
}
}
/*!
- * This method performs a simplyfication of a single polyedron cell. To do that each face of cell whose connectivity is defined by [ \b begin , \b end )
+ * This method performs a simplyfication of a single polyedron cell. To do that each face of cell whose connectivity is defined by [ \b begin , \b end )
* is compared with the others in order to find faces in the same plane (with approx of eps). If any, the cells are grouped together and projected to
* a 2D space.
*
/*!
* This method computes the normalized vector of the plane and the pos of the point belonging to the plane and the line defined by the vector going
* through origin. The plane is defined by its nodal connectivity [ \b begin, \b end ).
- *
+ *
* \param [in] eps below that value the dot product of 2 vectors is considered as colinears
* \param [in] coords coordinates expected to have 3 components.
* \param [in] begin start of the nodal connectivity of the face.
if(b1 || b2) { b=b2; isPerm[i]=true; smthChanged++; break; }
}
if(isPerm[i])
- {
+ {
if(!b)
std::reverse(bgFace+1,endFace);
for(std::size_t j=0;j<nbOfEdgesInFace;j++)
/*!
* This method makes the assumption spacedimension == meshdimension == 2.
* This method works only for linear cells.
- *
+ *
* \return a newly allocated array containing the connectivity of a polygon type enum included (NORM_POLYGON in pos#0)
*/
DataArrayInt *MEDCouplingUMesh::buildUnionOf2DMesh() const
/*!
* This method makes the assumption spacedimension == meshdimension == 3.
* This method works only for linear cells.
- *
+ *
* \return a newly allocated array containing the connectivity of a polygon type enum included (NORM_POLYHED in pos#0)
*/
DataArrayInt *MEDCouplingUMesh::buildUnionOf3DMesh() const
* avoid to have a non conform mesh.
*
* \return int - the number of new nodes created (in most of cases 0).
- *
+ *
* \throw If \a this is not coherent.
* \throw If \a this has not spaceDim equal to 2.
* \throw If \a this has not meshDim equal to 2.
* the geometric cell type set to INTERP_KERNEL::NORM_POLYGON.
* This method excepts that \b coords parameter is expected to be in dimension 2. [ \b nodalConnBg , \b nodalConnEnd ) is the nodal connectivity of the input
* cell (geometric cell type included at the position 0). If the meshdimension of the input cell is not equal to 2 an INTERP_KERNEL::Exception will be thrown.
- *
+ *
* \return false if the input connectivity represents already the convex hull, true if the input cell needs to be reordered.
*/
bool MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis(const double *coords, const int *nodalConnBg, const int *nodalConnEnd, DataArrayInt *nodalConnecOut)
/*!
* This method works on an input pair (\b arr, \b arrIndx) where \b arr indexes is in \b arrIndx.
* This method will not impact the size of inout parameter \b arrIndx but the size of \b arr will be modified in case of suppression.
- *
+ *
* \param [in] idsToRemoveBg begin of set of ids to remove in \b arr (included)
* \param [in] idsToRemoveEnd end of set of ids to remove in \b arr (excluded)
* \param [in,out] arr array in which the remove operation will be done.
* \param [in] srcArrIndex index array of \b srcArr
* \param [out] arrOut the resulting array
* \param [out] arrIndexOut the index array of the resulting array \b arrOut
- *
+ *
* \sa MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx
*/
void MEDCouplingUMesh::SetPartOfIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
* \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
* \param [in] srcArr input array that will be used as source of copy for ids in [ \b idsOfSelectBg , \b idsOfSelectEnd )
* \param [in] srcArrIndex index array of \b srcArr
- *
+ *
* \sa MEDCouplingUMesh::SetPartOfIndexedArrays
*/
void MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx(const int *idsOfSelectBg, const int *idsOfSelectEnd, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn,
* Then it is repeated recursively until either all ids are fetched or no more ids are reachable step by step.
* A negative value in \b arrIn means that it is ignored.
* This method is useful to see if a mesh is contiguous regarding its connectivity. If it is not the case the size of returned array is different from arrIndxIn->getNumberOfTuples()-1.
- *
+ *
* \param [in] arrIn arr origin array from which the extraction will be done.
* \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
* \return a newly allocated DataArray that stores all ids fetched by the gradually spread process.
* \param [in] srcArrIndex index array of \b srcArr
* \param [out] arrOut the resulting array
* \param [out] arrIndexOut the index array of the resulting array \b arrOut
- *
+ *
* \sa MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx MEDCouplingUMesh::SetPartOfIndexedArrays
*/
void MEDCouplingUMesh::SetPartOfIndexedArraysSlice(int start, int end, int step, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
* \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
* \param [in] srcArr input array that will be used as source of copy for ids in [\b idsOfSelectBg, \b idsOfSelectEnd)
* \param [in] srcArrIndex index array of \b srcArr
- *
+ *
* \sa MEDCouplingUMesh::SetPartOfIndexedArraysSlice MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx
*/
void MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice(int start, int end, int step, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn,
* The returned mesh contains as poly cells as number of contiguous zone (regarding connectivity).
* A spread contiguous zone is built using poly cells (polyhedra in 3D, polygons in 2D and polyline in 1D).
* The sum of measure field of returned mesh is equal to the sum of measure field of this.
- *
+ *
* \return a newly allocated mesh lying on the same coords than \b this with same meshdimension than \b this.
*/
MEDCouplingUMesh *MEDCouplingUMesh::buildSpreadZonesWithPoly() const
* This method will split **all** 3D cells in \a this into INTERP_KERNEL::NORM_TETRA4 cells and put them in the returned mesh.
* It leads to an increase to number of cells.
* This method contrary to MEDCouplingUMesh::simplexize can append coordinates in \a this to perform its work.
- * The \a nbOfAdditionalPoints returned value informs about it. If > 0, the coordinates array in returned mesh will have \a nbOfAdditionalPoints
+ * The \a nbOfAdditionalPoints returned value informs about it. If > 0, the coordinates array in returned mesh will have \a nbOfAdditionalPoints
* more tuples (nodes) than in \a this. Anyway, all the nodes in \a this (with the same order) will be in the returned mesh.
*
* \param [in] policy - the policy of splitting that must be in (PLANAR_FACE_5, PLANAR_FACE_6, GENERAL_24, GENERAL_48). The policy will be used only for INTERP_KERNEL::NORM_HEXA8 cells.
* For all other cells, the splitting policy will be ignored. See INTERP_KERNEL::SplittingPolicy for the images.
- * \param [out] nbOfAdditionalPoints - number of nodes added to \c this->_coords. If > 0 a new coordinates object will be constructed result of the aggregation of the old one and the new points added.
+ * \param [out] nbOfAdditionalPoints - number of nodes added to \c this->_coords. If > 0 a new coordinates object will be constructed result of the aggregation of the old one and the new points added.
* \param [out] n2oCells - A new instance of DataArrayInt holding, for each new cell,
* an id of old cell producing it. The caller is to delete this array using
* decrRef() as it is no more needed.
*
* \warning This method operates on each cells in this independently ! So it can leads to non conform mesh in returned value ! If you expect to have a conform mesh in output
* the policy PLANAR_FACE_6 should be used on a mesh sorted with MEDCoupling1SGTUMesh::sortHexa8EachOther.
- *
+ *
* \throw If \a this is not a 3D mesh (spaceDim==3 and meshDim==3).
* \throw If \a this is not fully constituted with linear 3D cells.
* \sa MEDCouplingUMesh::simplexize, MEDCoupling1SGTUMesh::sortHexa8EachOther
