-// Copyright (C) 2007-2012 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2016 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
-// version 2.1 of the License.
+// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
//
// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
//
+// Author : Anthony Geay (CEA/DEN)
#ifndef __PARAMEDMEM_MEDCOUPLINGPOINTSET_HXX__
#define __PARAMEDMEM_MEDCOUPLINGPOINTSET_HXX__
#include "MEDCoupling.hxx"
#include "MEDCouplingMesh.hxx"
+#include "InterpKernelHashMap.hxx"
+
#include <vector>
namespace INTERP_KERNEL
class DirectedBoundingBox;
}
-namespace ParaMEDMEM
+namespace MEDCoupling
{
class DataArrayInt;
class DataArrayDouble;
/*!
* This class is abstract and not instanciable.
- * ParaMEDMEM::MEDCouplingUMesh class inherits from this class.
+ * MEDCoupling::MEDCouplingUMesh class inherits from this class.
* This class aggregates an array '_coords' containing nodes coordinates.
* So all operations on coordinates are managed by this class.
* This is the case for example for following methods :
* rotation, translation, scaling, getNodeIdsNearPoint, boundingbox...
*/
- class MEDCOUPLING_EXPORT MEDCouplingPointSet : public MEDCouplingMesh
+ class MEDCouplingPointSet : public MEDCouplingMesh
{
protected:
- MEDCouplingPointSet();
- MEDCouplingPointSet(const MEDCouplingPointSet& other, bool deepCopy);
- ~MEDCouplingPointSet();
+ MEDCOUPLING_EXPORT MEDCouplingPointSet();
+ MEDCOUPLING_EXPORT MEDCouplingPointSet(const MEDCouplingPointSet& other, bool deepCpy);
+ MEDCOUPLING_EXPORT ~MEDCouplingPointSet();
+ public:
+ MEDCOUPLING_EXPORT void updateTime() const;
+ MEDCOUPLING_EXPORT std::size_t getHeapMemorySizeWithoutChildren() const;
+ MEDCOUPLING_EXPORT std::vector<const BigMemoryObject *> getDirectChildrenWithNull() const;
+ MEDCOUPLING_EXPORT int getNumberOfNodes() const;
+ MEDCOUPLING_EXPORT int getSpaceDimension() const;
+ MEDCOUPLING_EXPORT void setCoords(const DataArrayDouble *coords);
+ MEDCOUPLING_EXPORT const DataArrayDouble *getCoords() const { return _coords; }
+ MEDCOUPLING_EXPORT DataArrayDouble *getCoords() { return _coords; }
+ MEDCOUPLING_EXPORT DataArrayDouble *getCoordinatesAndOwner() const;
+ MEDCOUPLING_EXPORT const DataArrayDouble *getDirectAccessOfCoordsArrIfInStructure() const { return _coords; }
+ MEDCOUPLING_EXPORT void copyTinyStringsFrom(const MEDCouplingMesh *other);
+ MEDCOUPLING_EXPORT bool isEqualIfNotWhy(const MEDCouplingMesh *other, double prec, std::string& reason) const;
+ MEDCOUPLING_EXPORT bool isEqualWithoutConsideringStr(const MEDCouplingMesh *other, double prec) const;
+ MEDCOUPLING_EXPORT void checkFastEquivalWith(const MEDCouplingMesh *other, double prec) const;
+ MEDCOUPLING_EXPORT void checkDeepEquivalWith(const MEDCouplingMesh *other, int cellCompPol, double prec,
+ DataArrayInt *&cellCor, DataArrayInt *&nodeCor) const;
+ MEDCOUPLING_EXPORT void checkDeepEquivalOnSameNodesWith(const MEDCouplingMesh *other, int cellCompPol, double prec,
+ DataArrayInt *&cellCor) const;
+ MEDCOUPLING_EXPORT bool areCoordsEqualIfNotWhy(const MEDCouplingPointSet& other, double prec, std::string& reason) const;
+ MEDCOUPLING_EXPORT bool areCoordsEqual(const MEDCouplingPointSet& other, double prec) const;
+ MEDCOUPLING_EXPORT bool areCoordsEqualWithoutConsideringStr(const MEDCouplingPointSet& other, double prec) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *deepCopyConnectivityOnly() const = 0;
+ MEDCOUPLING_EXPORT virtual void shallowCopyConnectivityFrom(const MEDCouplingPointSet *other) = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayInt *mergeNodes(double precision, bool& areNodesMerged, int& newNbOfNodes);
+ MEDCOUPLING_EXPORT virtual DataArrayInt *mergeNodesCenter(double precision, bool& areNodesMerged, int& newNbOfNodes);
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *mergeMyselfWithOnSameCoords(const MEDCouplingPointSet *other) const = 0;
+ MEDCOUPLING_EXPORT virtual void computeNodeIdsAlg(std::vector<bool>& nodeIdsInUse) const = 0;
+ MEDCOUPLING_EXPORT void getCoordinatesOfNode(int nodeId, std::vector<double>& coo) const;
+ MEDCOUPLING_EXPORT DataArrayInt *buildPermArrayForMergeNode(double precision, int limitNodeId, bool& areNodesMerged, int& newNbOfNodes) const;
+ MEDCOUPLING_EXPORT DataArrayInt *getNodeIdsNearPoint(const double *pos, double eps) const;
+ MEDCOUPLING_EXPORT void getNodeIdsNearPoints(const double *pos, int nbOfPoints, double eps, DataArrayInt *& c, DataArrayInt *& cI) const;
+ MEDCOUPLING_EXPORT void findCommonNodes(double prec, int limitNodeId, DataArrayInt *&comm, DataArrayInt *&commIndex) const;
+ MEDCOUPLING_EXPORT virtual void findCommonCells(int compType, int startCellId, DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr) const = 0;
+ MEDCOUPLING_EXPORT DataArrayInt *buildNewNumberingFromCommonNodesFormat(const DataArrayInt *comm, const DataArrayInt *commIndex,
+ int& newNbOfNodes) const;
+ MEDCOUPLING_EXPORT void getBoundingBox(double *bbox) const;
+ MEDCOUPLING_EXPORT void zipCoords();
+ MEDCOUPLING_EXPORT double getCaracteristicDimension() const;
+ MEDCOUPLING_EXPORT void recenterForMaxPrecision(double eps);
+ MEDCOUPLING_EXPORT void rotate(const double *center, const double *vector, double angle);
+ MEDCOUPLING_EXPORT void translate(const double *vector);
+ MEDCOUPLING_EXPORT void scale(const double *point, double factor);
+ MEDCOUPLING_EXPORT void changeSpaceDimension(int newSpaceDim, double dftVal=0.);
+ MEDCOUPLING_EXPORT void tryToShareSameCoords(const MEDCouplingPointSet& other, double epsilon);
+ MEDCOUPLING_EXPORT void duplicateNodesInCoords(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd);
+ MEDCOUPLING_EXPORT virtual void tryToShareSameCoordsPermute(const MEDCouplingPointSet& other, double epsilon);
+ MEDCOUPLING_EXPORT void findNodesOnPlane(const double *pt, const double *vec, double eps, std::vector<int>& nodes) const;
+ MEDCOUPLING_EXPORT void findNodesOnLine(const double *pt, const double *vec, double eps, std::vector<int>& nodes) const;
+ MEDCOUPLING_EXPORT static DataArrayDouble *MergeNodesArray(const MEDCouplingPointSet *m1, const MEDCouplingPointSet *m2);
+ MEDCOUPLING_EXPORT static DataArrayDouble *MergeNodesArray(const std::vector<const MEDCouplingPointSet *>& ms);
+ MEDCOUPLING_EXPORT static MEDCouplingPointSet *BuildInstanceFromMeshType(MEDCouplingMeshType type);
+ MEDCOUPLING_EXPORT static DataArrayInt *ComputeNbOfInteractionsWithSrcCells(const MEDCouplingPointSet *srcMesh, const MEDCouplingPointSet *trgMesh, double eps);
+ MEDCOUPLING_EXPORT MEDCouplingMesh *buildPart(const int *start, const int *end) const;
+ MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartAndReduceNodes(const int *start, const int *end, DataArrayInt*& arr) const;
+ MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartRange(int beginCellIds, int endCellIds, int stepCellIds) const;
+ MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartRangeAndReduceNodes(int beginCellIds, int endCellIds, int stepCellIds, int& beginOut, int& endOut, int& stepOut, DataArrayInt*& arr) const;
+ MEDCOUPLING_EXPORT DataArrayInt *getCellIdsFullyIncludedInNodeIds(const int *partBg, const int *partEnd) const;
+ MEDCOUPLING_EXPORT DataArrayInt *getCellIdsLyingOnNodes(const int *begin, const int *end, bool fullyIn) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelf(const int *start, const int *end, bool keepCoords=true) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfSlice(int start, int end, int step, bool keepCoords=true) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfKeepCoords(const int *begin, const int *end) const = 0;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfKeepCoordsSlice(int start, int end, int step) const = 0;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfNode(const int *start, const int *end, bool fullyIn) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildFacePartOfMySelfNode(const int *start, const int *end, bool fullyIn) const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayInt *findBoundaryNodes() const = 0;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildBoundaryMesh(bool keepCoords) const = 0;
+ MEDCOUPLING_EXPORT virtual int getNumberOfNodesInCell(int cellId) const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayInt *computeFetchedNodeIds() const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayInt *getNodeIdsInUse(int& nbrOfNodesInUse) const = 0;
+ MEDCOUPLING_EXPORT virtual void fillCellIdsToKeepFromNodeIds(const int *begin, const int *end, bool fullyIn, DataArrayInt *&cellIdsKeptArr) const = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodesInConn(const int *newNodeNumbersO2N) = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodesInConn(const INTERP_KERNEL::HashMap<int,int>& newNodeNumbersO2N) = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodesWithOffsetInConn(int offset) = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodes(const int *newNodeNumbers, int newNbOfNodes);
+ MEDCOUPLING_EXPORT virtual void renumberNodesCenter(const int *newNodeNumbers, int newNbOfNodes);
+ MEDCOUPLING_EXPORT virtual bool isEmptyMesh(const std::vector<int>& tinyInfo) const = 0;
+ MEDCOUPLING_EXPORT virtual void invertOrientationOfAllCells() = 0;
+ MEDCOUPLING_EXPORT virtual void checkFullyDefined() const = 0;
+ MEDCOUPLING_EXPORT void getTinySerializationInformation(std::vector<double>& tinyInfoD, std::vector<int>& tinyInfo, std::vector<std::string>& littleStrings) const;
+ MEDCOUPLING_EXPORT void resizeForUnserialization(const std::vector<int>& tinyInfo, DataArrayInt *a1, DataArrayDouble *a2, std::vector<std::string>& littleStrings) const;
+ MEDCOUPLING_EXPORT void serialize(DataArrayInt *&a1, DataArrayDouble *&a2) const;
+ MEDCOUPLING_EXPORT void unserialization(const std::vector<double>& tinyInfoD, const std::vector<int>& tinyInfo, const DataArrayInt *a1, DataArrayDouble *a2,
+ const std::vector<std::string>& littleStrings);
+ MEDCOUPLING_EXPORT virtual DataArrayDouble *getBoundingBoxForBBTree(double arcDetEps=1e-12) const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayInt *getCellsInBoundingBox(const double *bbox, double eps) const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayInt *getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps) = 0;
+ MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *computeDiameterField() const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayInt *zipCoordsTraducer();
+ MEDCOUPLING_EXPORT virtual DataArrayInt *zipConnectivityTraducer(int compType, int startCellId=0);
+ MEDCOUPLING_EXPORT virtual bool areAllNodesFetched() const;
+ //tools
public:
- void updateTime() const;
- int getNumberOfNodes() const;
- int getSpaceDimension() const;
- void setCoords(const DataArrayDouble *coords);
- //! This method returns directly the array in 'this' \b without incrementing ref counter. The pointer is dealed by the mesh. The caller should not deal (decrRef) with this pointer
- const DataArrayDouble *getCoords() const { return _coords; }
- //! This method returns directly the array in 'this' \b without incrementing ref counter. The pointer is dealed by the mesh. The caller should not deal (decrRef) with this pointer
- DataArrayDouble *getCoords() { return _coords; }
- DataArrayDouble *getCoordinatesAndOwner() const;
- void copyTinyStringsFrom(const MEDCouplingMesh *other) throw(INTERP_KERNEL::Exception);
- bool isEqualIfNotWhy(const MEDCouplingMesh *other, double prec, std::string& reason) const throw(INTERP_KERNEL::Exception);
- bool isEqualWithoutConsideringStr(const MEDCouplingMesh *other, double prec) const;
- bool areCoordsEqualIfNotWhy(const MEDCouplingPointSet& other, double prec, std::string& reason) const;
- bool areCoordsEqual(const MEDCouplingPointSet& other, double prec) const;
- bool areCoordsEqualWithoutConsideringStr(const MEDCouplingPointSet& other, double prec) const;
- virtual DataArrayInt *mergeNodes(double precision, bool& areNodesMerged, int& newNbOfNodes) = 0;
- virtual DataArrayInt *mergeNodes2(double precision, bool& areNodesMerged, int& newNbOfNodes) = 0;
- void getCoordinatesOfNode(int nodeId, std::vector<double>& coo) const throw(INTERP_KERNEL::Exception);
- DataArrayInt *buildPermArrayForMergeNode(double precision, int limitNodeId, bool& areNodesMerged, int& newNbOfNodes) const;
- std::vector<int> getNodeIdsNearPoint(const double *pos, double eps) const throw(INTERP_KERNEL::Exception);
- void getNodeIdsNearPoints(const double *pos, int nbOfNodes, double eps, std::vector<int>& c, std::vector<int>& cI) const throw(INTERP_KERNEL::Exception);
- void findCommonNodes(double prec, int limitNodeId, DataArrayInt *&comm, DataArrayInt *&commIndex) const;
- DataArrayInt *buildNewNumberingFromCommonNodesFormat(const DataArrayInt *comm, const DataArrayInt *commIndex,
- int& newNbOfNodes) const;
- void getBoundingBox(double *bbox) const throw(INTERP_KERNEL::Exception);
- void zipCoords();
- double getCaracteristicDimension() const;
- void recenterForMaxPrecision(double eps) throw(INTERP_KERNEL::Exception);
- void rotate(const double *center, const double *vector, double angle);
- void translate(const double *vector);
- void scale(const double *point, double factor);
- void changeSpaceDimension(int newSpaceDim, double dftVal=0.) throw(INTERP_KERNEL::Exception);
- void tryToShareSameCoords(const MEDCouplingPointSet& other, double epsilon) throw(INTERP_KERNEL::Exception);
- void duplicateNodesInCoords(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd) throw(INTERP_KERNEL::Exception);
- virtual void tryToShareSameCoordsPermute(const MEDCouplingPointSet& other, double epsilon) throw(INTERP_KERNEL::Exception) = 0;
- void findNodesOnPlane(const double *pt, const double *vec, double eps, std::vector<int>& nodes) const throw(INTERP_KERNEL::Exception);
- void findNodesOnLine(const double *pt, const double *vec, double eps, std::vector<int>& nodes) const throw(INTERP_KERNEL::Exception);
- static DataArrayDouble *MergeNodesArray(const MEDCouplingPointSet *m1, const MEDCouplingPointSet *m2) throw(INTERP_KERNEL::Exception);
- static DataArrayDouble *MergeNodesArray(const std::vector<const MEDCouplingPointSet *>& ms) throw(INTERP_KERNEL::Exception);
- static MEDCouplingPointSet *BuildInstanceFromMeshType(MEDCouplingMeshType type);
- static void Rotate2DAlg(const double *center, double angle, int nbNodes, double *coords);
- static void Rotate3DAlg(const double *center, const double *vect, double angle, int nbNodes, double *coords);
- MEDCouplingMesh *buildPart(const int *start, const int *end) const;
- MEDCouplingMesh *buildPartAndReduceNodes(const int *start, const int *end, DataArrayInt*& arr) const;
- virtual MEDCouplingPointSet *buildPartOfMySelf(const int *start, const int *end, bool keepCoords=true) const = 0;
- virtual MEDCouplingPointSet *buildPartOfMySelf2(int start, int end, int step, bool keepCoords=true) const throw(INTERP_KERNEL::Exception) = 0;
- virtual MEDCouplingPointSet *buildPartOfMySelfNode(const int *start, const int *end, bool fullyIn) const = 0;
- virtual MEDCouplingPointSet *buildFacePartOfMySelfNode(const int *start, const int *end, bool fullyIn) const = 0;
- virtual DataArrayInt *findBoundaryNodes() const = 0;
- virtual MEDCouplingPointSet *buildBoundaryMesh(bool keepCoords) const = 0;
- virtual void renumberNodes(const int *newNodeNumbers, int newNbOfNodes);
- virtual void renumberNodes2(const int *newNodeNumbers, int newNbOfNodes);
- virtual bool isEmptyMesh(const std::vector<int>& tinyInfo) const = 0;
- //! size of returned tinyInfo must be always the same.
- void getTinySerializationInformation(std::vector<double>& tinyInfoD, std::vector<int>& tinyInfo, std::vector<std::string>& littleStrings) const;
- void resizeForUnserialization(const std::vector<int>& tinyInfo, DataArrayInt *a1, DataArrayDouble *a2, std::vector<std::string>& littleStrings) const;
- void serialize(DataArrayInt *&a1, DataArrayDouble *&a2) const;
- void unserialization(const std::vector<double>& tinyInfoD, const std::vector<int>& tinyInfo, const DataArrayInt *a1, DataArrayDouble *a2,
- const std::vector<std::string>& littleStrings);
- virtual void getCellsInBoundingBox(const double *bbox, double eps, std::vector<int>& elems) const = 0;
- virtual void getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps, std::vector<int>& elems) = 0;
- virtual DataArrayInt *zipCoordsTraducer() = 0;
+ MEDCOUPLING_EXPORT bool areCellsFrom2MeshEqual(const MEDCouplingPointSet *other, int cellId, double prec) const;
protected:
- virtual void checkFullyDefined() const throw(INTERP_KERNEL::Exception) = 0;
- static bool intersectsBoundingBox(const double* bb1, const double* bb2, int dim, double eps);
- static bool intersectsBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bb1, const double* bb2, int dim, double eps);
- void rotate2D(const double *center, double angle);
- void rotate3D(const double *center, const double *vect, double angle);
- void project2DCellOnXY(const int *startConn, const int *endConn, std::vector<double>& res) const;
- static bool isButterfly2DCell(const std::vector<double>& res, bool isQuad, double eps);
+ MEDCOUPLING_EXPORT void checkConsistencyLight() const;
+ MEDCOUPLING_EXPORT static bool intersectsBoundingBox(const double* bb1, const double* bb2, int dim, double eps);
+ MEDCOUPLING_EXPORT static bool intersectsBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bb1, const double* bb2, int dim, double eps);
+ MEDCOUPLING_EXPORT void rotate2D(const double *center, double angle);
+ MEDCOUPLING_EXPORT void rotate3D(const double *center, const double *vect, double angle);
+ MEDCOUPLING_EXPORT void project2DCellOnXY(const int *startConn, const int *endConn, std::vector<double>& res) const;
+ MEDCOUPLING_EXPORT static bool isButterfly2DCell(const std::vector<double>& res, bool isQuad, double eps);
protected:
DataArrayDouble *_coords;
};