-// Copyright (C) 2007-2014 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2020 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "MEDCoupling.hxx"
#include "MEDCouplingMesh.hxx"
+#include "InterpKernelHashMap.hxx"
+
#include <vector>
namespace INTERP_KERNEL
class DirectedBoundingBox;
}
-namespace ParaMEDMEM
+namespace MEDCoupling
{
- class DataArrayInt;
+ class DataArrayIdType;
class DataArrayDouble;
/*!
* This class is abstract and not instanciable.
- * ParaMEDMEM::MEDCouplingUMesh class inherits from this class.
+ * MEDCoupling::MEDCouplingUMesh class inherits from this class.
* This class aggregates an array '_coords' containing nodes coordinates.
* So all operations on coordinates are managed by this class.
* This is the case for example for following methods :
{
protected:
MEDCOUPLING_EXPORT MEDCouplingPointSet();
- MEDCOUPLING_EXPORT MEDCouplingPointSet(const MEDCouplingPointSet& other, bool deepCopy);
+ MEDCOUPLING_EXPORT MEDCouplingPointSet(const MEDCouplingPointSet& other, bool deepCpy);
MEDCOUPLING_EXPORT ~MEDCouplingPointSet();
public:
MEDCOUPLING_EXPORT void updateTime() const;
MEDCOUPLING_EXPORT std::size_t getHeapMemorySizeWithoutChildren() const;
- MEDCOUPLING_EXPORT std::vector<const BigMemoryObject *> getDirectChildren() const;
- MEDCOUPLING_EXPORT int getNumberOfNodes() const;
+ MEDCOUPLING_EXPORT std::vector<const BigMemoryObject *> getDirectChildrenWithNull() const;
+ MEDCOUPLING_EXPORT mcIdType getNumberOfNodes() const;
MEDCOUPLING_EXPORT int getSpaceDimension() const;
MEDCOUPLING_EXPORT void setCoords(const DataArrayDouble *coords);
MEDCOUPLING_EXPORT const DataArrayDouble *getCoords() const { return _coords; }
MEDCOUPLING_EXPORT DataArrayDouble *getCoords() { return _coords; }
MEDCOUPLING_EXPORT DataArrayDouble *getCoordinatesAndOwner() const;
+ MEDCOUPLING_EXPORT const DataArrayDouble *getDirectAccessOfCoordsArrIfInStructure() const { return _coords; }
MEDCOUPLING_EXPORT void copyTinyStringsFrom(const MEDCouplingMesh *other);
MEDCOUPLING_EXPORT bool isEqualIfNotWhy(const MEDCouplingMesh *other, double prec, std::string& reason) const;
MEDCOUPLING_EXPORT bool isEqualWithoutConsideringStr(const MEDCouplingMesh *other, double prec) const;
MEDCOUPLING_EXPORT void checkFastEquivalWith(const MEDCouplingMesh *other, double prec) const;
MEDCOUPLING_EXPORT void checkDeepEquivalWith(const MEDCouplingMesh *other, int cellCompPol, double prec,
- DataArrayInt *&cellCor, DataArrayInt *&nodeCor) const throw(INTERP_KERNEL::Exception);
+ DataArrayIdType *&cellCor, DataArrayIdType *&nodeCor) const;
MEDCOUPLING_EXPORT void checkDeepEquivalOnSameNodesWith(const MEDCouplingMesh *other, int cellCompPol, double prec,
- DataArrayInt *&cellCor) const throw(INTERP_KERNEL::Exception);
+ DataArrayIdType *&cellCor) const;
MEDCOUPLING_EXPORT bool areCoordsEqualIfNotWhy(const MEDCouplingPointSet& other, double prec, std::string& reason) const;
MEDCOUPLING_EXPORT bool areCoordsEqual(const MEDCouplingPointSet& other, double prec) const;
MEDCOUPLING_EXPORT bool areCoordsEqualWithoutConsideringStr(const MEDCouplingPointSet& other, double prec) const;
- MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *deepCpyConnectivityOnly() const = 0;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *deepCopyConnectivityOnly() const = 0;
MEDCOUPLING_EXPORT virtual void shallowCopyConnectivityFrom(const MEDCouplingPointSet *other) = 0;
- MEDCOUPLING_EXPORT virtual DataArrayInt *mergeNodes(double precision, bool& areNodesMerged, int& newNbOfNodes);
- MEDCOUPLING_EXPORT virtual DataArrayInt *mergeNodes2(double precision, bool& areNodesMerged, int& newNbOfNodes);
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *mergeNodes(double precision, bool& areNodesMerged, mcIdType& newNbOfNodes);
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *mergeNodesCenter(double precision, bool& areNodesMerged, mcIdType& newNbOfNodes);
MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *mergeMyselfWithOnSameCoords(const MEDCouplingPointSet *other) const = 0;
MEDCOUPLING_EXPORT virtual void computeNodeIdsAlg(std::vector<bool>& nodeIdsInUse) const = 0;
- MEDCOUPLING_EXPORT void getCoordinatesOfNode(int nodeId, std::vector<double>& coo) const;
- MEDCOUPLING_EXPORT DataArrayInt *buildPermArrayForMergeNode(double precision, int limitNodeId, bool& areNodesMerged, int& newNbOfNodes) const;
- MEDCOUPLING_EXPORT DataArrayInt *getNodeIdsNearPoint(const double *pos, double eps) const;
- MEDCOUPLING_EXPORT void getNodeIdsNearPoints(const double *pos, int nbOfPoints, double eps, DataArrayInt *& c, DataArrayInt *& cI) const;
- MEDCOUPLING_EXPORT void findCommonNodes(double prec, int limitNodeId, DataArrayInt *&comm, DataArrayInt *&commIndex) const;
- MEDCOUPLING_EXPORT virtual void findCommonCells(int compType, int startCellId, DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr) const = 0;
- MEDCOUPLING_EXPORT DataArrayInt *buildNewNumberingFromCommonNodesFormat(const DataArrayInt *comm, const DataArrayInt *commIndex,
- int& newNbOfNodes) const;
+ MEDCOUPLING_EXPORT void getCoordinatesOfNode(mcIdType nodeId, std::vector<double>& coo) const;
+ MEDCOUPLING_EXPORT DataArrayIdType *buildPermArrayForMergeNode(double precision, mcIdType limitNodeId, bool& areNodesMerged, mcIdType& newNbOfNodes) const;
+ MEDCOUPLING_EXPORT DataArrayIdType *getNodeIdsNearPoint(const double *pos, double eps) const;
+ MEDCOUPLING_EXPORT void getNodeIdsNearPoints(const double *pos, mcIdType nbOfPoints, double eps, DataArrayIdType *& c, DataArrayIdType *& cI) const;
+ MEDCOUPLING_EXPORT void findCommonNodes(double prec, mcIdType limitNodeId, DataArrayIdType *&comm, DataArrayIdType *&commIndex) const;
+ MEDCOUPLING_EXPORT virtual void findCommonCells(int compType, mcIdType startCellId, DataArrayIdType *& commonCellsArr, DataArrayIdType *& commonCellsIArr) const = 0;
+ MEDCOUPLING_EXPORT DataArrayIdType *buildNewNumberingFromCommonNodesFormat(const DataArrayIdType *comm, const DataArrayIdType *commIndex,
+ mcIdType& newNbOfNodes) const;
MEDCOUPLING_EXPORT void getBoundingBox(double *bbox) const;
MEDCOUPLING_EXPORT void zipCoords();
MEDCOUPLING_EXPORT double getCaracteristicDimension() const;
MEDCOUPLING_EXPORT void scale(const double *point, double factor);
MEDCOUPLING_EXPORT void changeSpaceDimension(int newSpaceDim, double dftVal=0.);
MEDCOUPLING_EXPORT void tryToShareSameCoords(const MEDCouplingPointSet& other, double epsilon);
- MEDCOUPLING_EXPORT void duplicateNodesInCoords(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd);
+ MEDCOUPLING_EXPORT void duplicateNodesInCoords(const mcIdType *nodeIdsToDuplicateBg, const mcIdType *nodeIdsToDuplicateEnd);
MEDCOUPLING_EXPORT virtual void tryToShareSameCoordsPermute(const MEDCouplingPointSet& other, double epsilon);
- MEDCOUPLING_EXPORT void findNodesOnPlane(const double *pt, const double *vec, double eps, std::vector<int>& nodes) const;
- MEDCOUPLING_EXPORT void findNodesOnLine(const double *pt, const double *vec, double eps, std::vector<int>& nodes) const;
+ MEDCOUPLING_EXPORT void findNodesOnPlane(const double *pt, const double *vec, double eps, std::vector<mcIdType>& nodes) const;
+ MEDCOUPLING_EXPORT void findNodesOnLine(const double *pt, const double *vec, double eps, std::vector<mcIdType>& nodes) const;
MEDCOUPLING_EXPORT static DataArrayDouble *MergeNodesArray(const MEDCouplingPointSet *m1, const MEDCouplingPointSet *m2);
MEDCOUPLING_EXPORT static DataArrayDouble *MergeNodesArray(const std::vector<const MEDCouplingPointSet *>& ms);
MEDCOUPLING_EXPORT static MEDCouplingPointSet *BuildInstanceFromMeshType(MEDCouplingMeshType type);
- MEDCOUPLING_EXPORT static void Rotate2DAlg(const double *center, double angle, int nbNodes, double *coords);
- MEDCOUPLING_EXPORT static void Rotate3DAlg(const double *center, const double *vect, double angle, int nbNodes, double *coords);
- MEDCOUPLING_EXPORT static DataArrayInt *ComputeNbOfInteractionsWithSrcCells(const MEDCouplingPointSet *srcMesh, const MEDCouplingPointSet *trgMesh, double eps);
- MEDCOUPLING_EXPORT MEDCouplingMesh *buildPart(const int *start, const int *end) const;
- MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartAndReduceNodes(const int *start, const int *end, DataArrayInt*& arr) const;
- MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartRange(int beginCellIds, int endCellIds, int stepCellIds) const;
- MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartRangeAndReduceNodes(int beginCellIds, int endCellIds, int stepCellIds, int& beginOut, int& endOut, int& stepOut, DataArrayInt*& arr) const;
- MEDCOUPLING_EXPORT DataArrayInt *getCellIdsFullyIncludedInNodeIds(const int *partBg, const int *partEnd) const;
- MEDCOUPLING_EXPORT DataArrayInt *getCellIdsLyingOnNodes(const int *begin, const int *end, bool fullyIn) const;
- MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelf(const int *start, const int *end, bool keepCoords=true) const;
- MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelf2(int start, int end, int step, bool keepCoords=true) const;
- MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfKeepCoords(const int *begin, const int *end) const = 0;
- MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfKeepCoords2(int start, int end, int step) const = 0;
- MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfNode(const int *start, const int *end, bool fullyIn) const;
- MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildFacePartOfMySelfNode(const int *start, const int *end, bool fullyIn) const = 0;
- MEDCOUPLING_EXPORT virtual DataArrayInt *findBoundaryNodes() const = 0;
+ MEDCOUPLING_EXPORT static DataArrayIdType *ComputeNbOfInteractionsWithSrcCells(const MEDCouplingPointSet *srcMesh, const MEDCouplingPointSet *trgMesh, double eps);
+ MEDCOUPLING_EXPORT MEDCouplingMesh *buildPart(const mcIdType *start, const mcIdType *end) const;
+ MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartAndReduceNodes(const mcIdType *start, const mcIdType *end, DataArrayIdType*& arr) const;
+ MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartRange(mcIdType beginCellIds, mcIdType endCellIds, mcIdType stepCellIds) const;
+ MEDCOUPLING_EXPORT MEDCouplingMesh *buildPartRangeAndReduceNodes(mcIdType beginCellIds, mcIdType endCellIds, mcIdType stepCellIds, mcIdType& beginOut, mcIdType& endOut, mcIdType& stepOut, DataArrayIdType*& arr) const;
+ MEDCOUPLING_EXPORT DataArrayIdType *getCellIdsFullyIncludedInNodeIds(const mcIdType *partBg, const mcIdType *partEnd) const;
+ MEDCOUPLING_EXPORT DataArrayIdType *getCellIdsLyingOnNodes(const mcIdType *begin, const mcIdType *end, bool fullyIn) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelf(const mcIdType *start, const mcIdType *end, bool keepCoords=true) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfSlice(mcIdType start, mcIdType end, mcIdType step, bool keepCoords=true) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfKeepCoords(const mcIdType *begin, const mcIdType *end) const = 0;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfKeepCoordsSlice(mcIdType start, mcIdType end, mcIdType step) const = 0;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildPartOfMySelfNode(const mcIdType *start, const mcIdType *end, bool fullyIn) const;
+ MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildFacePartOfMySelfNode(const mcIdType *start, const mcIdType *end, bool fullyIn) const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *findBoundaryNodes() const = 0;
MEDCOUPLING_EXPORT virtual MEDCouplingPointSet *buildBoundaryMesh(bool keepCoords) const = 0;
- MEDCOUPLING_EXPORT virtual int getNumberOfNodesInCell(int cellId) const = 0;
- MEDCOUPLING_EXPORT virtual DataArrayInt *getNodeIdsInUse(int& nbrOfNodesInUse) const = 0;
- MEDCOUPLING_EXPORT virtual void fillCellIdsToKeepFromNodeIds(const int *begin, const int *end, bool fullyIn, DataArrayInt *&cellIdsKeptArr) const = 0;
- MEDCOUPLING_EXPORT virtual void renumberNodesInConn(const int *newNodeNumbersO2N) = 0;
- MEDCOUPLING_EXPORT virtual void renumberNodes(const int *newNodeNumbers, int newNbOfNodes);
- MEDCOUPLING_EXPORT virtual void renumberNodes2(const int *newNodeNumbers, int newNbOfNodes);
- MEDCOUPLING_EXPORT virtual bool isEmptyMesh(const std::vector<int>& tinyInfo) const = 0;
+ MEDCOUPLING_EXPORT virtual mcIdType getNumberOfNodesInCell(mcIdType cellId) const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *computeFetchedNodeIds() const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *getNodeIdsInUse(mcIdType& nbrOfNodesInUse) const = 0;
+ MEDCOUPLING_EXPORT virtual void fillCellIdsToKeepFromNodeIds(const mcIdType *begin, const mcIdType *end, bool fullyIn, DataArrayIdType *&cellIdsKeptArr) const = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodesInConn(const mcIdType *newNodeNumbersO2N) = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodesInConn(const INTERP_KERNEL::HashMap<mcIdType,mcIdType>& newNodeNumbersO2N) = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodesInConn(const std::map<mcIdType,mcIdType>& newNodeNumbersO2N) = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodesWithOffsetInConn(mcIdType offset) = 0;
+ MEDCOUPLING_EXPORT virtual void renumberNodes(const mcIdType *newNodeNumbers, mcIdType newNbOfNodes);
+ MEDCOUPLING_EXPORT virtual void renumberNodesCenter(const mcIdType *newNodeNumbers, mcIdType newNbOfNodes);
+ MEDCOUPLING_EXPORT virtual bool isEmptyMesh(const std::vector<mcIdType>& tinyInfo) const = 0;
+ MEDCOUPLING_EXPORT virtual void invertOrientationOfAllCells() = 0;
MEDCOUPLING_EXPORT virtual void checkFullyDefined() const = 0;
- MEDCOUPLING_EXPORT void getTinySerializationInformation(std::vector<double>& tinyInfoD, std::vector<int>& tinyInfo, std::vector<std::string>& littleStrings) const;
- MEDCOUPLING_EXPORT void resizeForUnserialization(const std::vector<int>& tinyInfo, DataArrayInt *a1, DataArrayDouble *a2, std::vector<std::string>& littleStrings) const;
- MEDCOUPLING_EXPORT void serialize(DataArrayInt *&a1, DataArrayDouble *&a2) const;
- MEDCOUPLING_EXPORT void unserialization(const std::vector<double>& tinyInfoD, const std::vector<int>& tinyInfo, const DataArrayInt *a1, DataArrayDouble *a2,
+ MEDCOUPLING_EXPORT void getTinySerializationInformation(std::vector<double>& tinyInfoD, std::vector<mcIdType>& tinyInfo, std::vector<std::string>& littleStrings) const;
+ MEDCOUPLING_EXPORT void resizeForUnserialization(const std::vector<mcIdType>& tinyInfo, DataArrayIdType *a1, DataArrayDouble *a2, std::vector<std::string>& littleStrings) const;
+ MEDCOUPLING_EXPORT void serialize(DataArrayIdType *&a1, DataArrayDouble *&a2) const;
+ MEDCOUPLING_EXPORT void unserialization(const std::vector<double>& tinyInfoD, const std::vector<mcIdType>& tinyInfo, const DataArrayIdType *a1, DataArrayDouble *a2,
const std::vector<std::string>& littleStrings);
MEDCOUPLING_EXPORT virtual DataArrayDouble *getBoundingBoxForBBTree(double arcDetEps=1e-12) const = 0;
- MEDCOUPLING_EXPORT virtual DataArrayInt *getCellsInBoundingBox(const double *bbox, double eps) const = 0;
- MEDCOUPLING_EXPORT virtual DataArrayInt *getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps) = 0;
- MEDCOUPLING_EXPORT virtual DataArrayInt *zipCoordsTraducer();
- MEDCOUPLING_EXPORT virtual DataArrayInt *zipConnectivityTraducer(int compType, int startCellId=0);
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *getCellsInBoundingBox(const double *bbox, double eps) const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps) = 0;
+ MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *computeDiameterField() const = 0;
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *zipCoordsTraducer();
+ MEDCOUPLING_EXPORT virtual DataArrayIdType *zipConnectivityTraducer(int compType, mcIdType startCellId=0);
+ MEDCOUPLING_EXPORT virtual bool areAllNodesFetched() const;
//tools
public:
- MEDCOUPLING_EXPORT bool areCellsFrom2MeshEqual(const MEDCouplingPointSet *other, int cellId, double prec) const;
+ MEDCOUPLING_EXPORT bool areCellsFrom2MeshEqual(const MEDCouplingPointSet *other, mcIdType cellId, double prec) const;
protected:
- MEDCOUPLING_EXPORT void checkCoherency() const;
+ MEDCOUPLING_EXPORT void checkConsistencyLight() const;
MEDCOUPLING_EXPORT static bool intersectsBoundingBox(const double* bb1, const double* bb2, int dim, double eps);
MEDCOUPLING_EXPORT static bool intersectsBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bb1, const double* bb2, int dim, double eps);
MEDCOUPLING_EXPORT void rotate2D(const double *center, double angle);
MEDCOUPLING_EXPORT void rotate3D(const double *center, const double *vect, double angle);
- MEDCOUPLING_EXPORT void project2DCellOnXY(const int *startConn, const int *endConn, std::vector<double>& res) const;
+ MEDCOUPLING_EXPORT void project2DCellOnXY(const mcIdType *startConn, const mcIdType *endConn, std::vector<double>& res) const;
MEDCOUPLING_EXPORT static bool isButterfly2DCell(const std::vector<double>& res, bool isQuad, double eps);
protected:
DataArrayDouble *_coords;
