Some factorization before integration of ParaMEDMEM into medcoupling python module

[tools/medcoupling.git] / src / MEDCoupling / MEDCouplingMesh.hxx

diff --git a/src/MEDCoupling/MEDCouplingMesh.hxx b/src/MEDCoupling/MEDCouplingMesh.hxx
index ad1102c0d15477892e28ca910044ba21062805f5..32bd863917cbb98cf0aeb75ef8b2cef9f1b9d2be 100644 (file)
--- a/src/MEDCoupling/MEDCouplingMesh.hxx
+++ b/src/MEDCoupling/MEDCouplingMesh.hxx
@@ -1,4 +1,4 @@
-// Copyright (C) 2007-2014  CEA/DEN, EDF R&D
+// Copyright (C) 2007-2016  CEA/DEN, EDF R&D
 //
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
@@ -22,17 +22,18 @@
 #define __PARAMEDMEM_MEDCOUPLINGMESH_HXX__
 
 #include "MEDCoupling.hxx"
+#include "MCType.hxx"
 #include "MEDCouplingTimeLabel.hxx"
 #include "MEDCouplingRefCountObject.hxx"
 #include "NormalizedUnstructuredMesh.hxx"
-#include "MEDCouplingAutoRefCountObjectPtr.hxx"
+#include "MCAuto.hxx"
 
 #include "InterpKernelException.hxx"
 
 #include <set>
 #include <vector>
 
-namespace ParaMEDMEM
+namespace MEDCoupling
 {
   typedef enum
     {
@@ -41,7 +42,8 @@ namespace ParaMEDMEM
       EXTRUDED = 8,
       CURVE_LINEAR = 9,
       SINGLE_STATIC_GEO_TYPE_UNSTRUCTURED = 10,
-      SINGLE_DYNAMIC_GEO_TYPE_UNSTRUCTURED = 11
+      SINGLE_DYNAMIC_GEO_TYPE_UNSTRUCTURED = 11,
+      IMAGE_GRID = 12
     } MEDCouplingMeshType;
   // -- WARNING this enum must be synchronized with MEDCouplingCommon.i file ! --
 
@@ -63,9 +65,11 @@ namespace ParaMEDMEM
     MEDCOUPLING_EXPORT void setTime(double val, int iteration, int order) { _time=val; _iteration=iteration; _order=order; }
     MEDCOUPLING_EXPORT void setTimeUnit(const std::string& unit) { _time_unit=unit; }
     MEDCOUPLING_EXPORT std::string getTimeUnit() const { return _time_unit; }
-    MEDCOUPLING_EXPORT virtual MEDCouplingMesh *deepCpy() const = 0;
     MEDCOUPLING_EXPORT virtual MEDCouplingMeshType getType() const = 0;
     MEDCOUPLING_EXPORT bool isStructured() const;
+    // Copy methods
+    MEDCOUPLING_EXPORT virtual MEDCouplingMesh *deepCopy() const = 0;
+    MEDCOUPLING_EXPORT virtual MEDCouplingMesh *clone(bool recDeepCpy) const = 0;
     MEDCOUPLING_EXPORT virtual void copyTinyStringsFrom(const MEDCouplingMesh *other);
     MEDCOUPLING_EXPORT virtual void copyTinyInfoFrom(const MEDCouplingMesh *other);
     // comparison methods
@@ -80,29 +84,29 @@ namespace ParaMEDMEM
     MEDCOUPLING_EXPORT void checkGeoEquivalWith(const MEDCouplingMesh *other, int levOfCheck, double prec,
                                                 DataArrayInt *&cellCor, DataArrayInt *&nodeCor) const;
     //
-    MEDCOUPLING_EXPORT virtual void checkCoherency() const = 0;
-    MEDCOUPLING_EXPORT virtual void checkCoherency1(double eps=1e-12) const = 0;
-    MEDCOUPLING_EXPORT virtual void checkCoherency2(double eps=1e-12) const = 0;
-    MEDCOUPLING_EXPORT virtual int getNumberOfCells() const = 0;
+    MEDCOUPLING_EXPORT virtual void checkConsistencyLight() const = 0;
+    MEDCOUPLING_EXPORT virtual void checkConsistency(double eps=1e-12) const = 0;
+    MEDCOUPLING_EXPORT virtual std::size_t getNumberOfCells() const = 0;
     MEDCOUPLING_EXPORT virtual int getNumberOfNodes() const = 0;
     MEDCOUPLING_EXPORT virtual int getSpaceDimension() const = 0;
     MEDCOUPLING_EXPORT virtual int getMeshDimension() const = 0;
     MEDCOUPLING_EXPORT virtual DataArrayDouble *getCoordinatesAndOwner() const = 0;
-    MEDCOUPLING_EXPORT virtual DataArrayDouble *getBarycenterAndOwner() const = 0;
+    MEDCOUPLING_EXPORT virtual DataArrayDouble *computeCellCenterOfMass() const = 0;
     MEDCOUPLING_EXPORT virtual DataArrayDouble *computeIsoBarycenterOfNodesPerCell() const = 0;
     MEDCOUPLING_EXPORT virtual DataArrayInt *giveCellsWithType(INTERP_KERNEL::NormalizedCellType type) const = 0;
     MEDCOUPLING_EXPORT virtual DataArrayInt *computeNbOfNodesPerCell() const = 0;
     MEDCOUPLING_EXPORT virtual DataArrayInt *computeEffectiveNbOfNodesPerCell() const = 0;
     MEDCOUPLING_EXPORT virtual DataArrayInt *computeNbOfFacesPerCell() const = 0;
-    MEDCOUPLING_EXPORT virtual int getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const = 0;
-    MEDCOUPLING_EXPORT virtual INTERP_KERNEL::NormalizedCellType getTypeOfCell(int cellId) const = 0;
+    MEDCOUPLING_EXPORT virtual std::size_t getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const = 0;
+    MEDCOUPLING_EXPORT virtual INTERP_KERNEL::NormalizedCellType getTypeOfCell(std::size_t cellId) const = 0;
     MEDCOUPLING_EXPORT virtual std::set<INTERP_KERNEL::NormalizedCellType> getAllGeoTypes() const = 0;
-    MEDCOUPLING_EXPORT virtual void getNodeIdsOfCell(int cellId, std::vector<int>& conn) const = 0;
+    MEDCOUPLING_EXPORT virtual void getNodeIdsOfCell(std::size_t cellId, std::vector<int>& conn) const = 0;
     MEDCOUPLING_EXPORT virtual DataArrayInt *getCellIdsFullyIncludedInNodeIds(const int *partBg, const int *partEnd) const;
     MEDCOUPLING_EXPORT virtual void getCoordinatesOfNode(int nodeId, std::vector<double>& coo) const = 0;
     MEDCOUPLING_EXPORT virtual std::string simpleRepr() const = 0;
     MEDCOUPLING_EXPORT virtual std::string advancedRepr() const = 0;
     // tools
+    MEDCOUPLING_EXPORT virtual const DataArrayDouble *getDirectAccessOfCoordsArrIfInStructure() const = 0;
     MEDCOUPLING_EXPORT virtual std::vector<int> getDistributionOfTypes() const = 0;
     MEDCOUPLING_EXPORT virtual DataArrayInt *checkTypeConsistencyAndContig(const std::vector<int>& code, const std::vector<const DataArrayInt *>& idsPerType) const = 0;
     MEDCOUPLING_EXPORT virtual void splitProfilePerType(const DataArrayInt *profile, std::vector<int>& code, std::vector<DataArrayInt *>& idsInPflPerType, std::vector<DataArrayInt *>& idsPerType) const = 0;
@@ -110,12 +114,12 @@ namespace ParaMEDMEM
     MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *getMeasureField(bool isAbs) const = 0;
     MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *getMeasureFieldOnNode(bool isAbs) const = 0;
     MEDCOUPLING_EXPORT virtual int getCellContainingPoint(const double *pos, double eps) const = 0;
-    MEDCOUPLING_EXPORT virtual void getCellsContainingPoint(const double *pos, double eps, std::vector<int>& elts) const;
-    MEDCOUPLING_EXPORT virtual void getCellsContainingPoints(const double *pos, int nbOfPoints, double eps, MEDCouplingAutoRefCountObjectPtr<DataArrayInt>& elts, MEDCouplingAutoRefCountObjectPtr<DataArrayInt>& eltsIndex) const;
+    MEDCOUPLING_EXPORT virtual void getCellsContainingPoint(const double *pos, double eps, std::vector<int>& elts) const = 0;
+    MEDCOUPLING_EXPORT virtual void getCellsContainingPoints(const double *pos, int nbOfPoints, double eps, MCAuto<DataArrayInt>& elts, MCAuto<DataArrayInt>& eltsIndex) const;
     MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *fillFromAnalytic(TypeOfField t, int nbOfComp, FunctionToEvaluate func) const;
     MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *fillFromAnalytic(TypeOfField t, int nbOfComp, const std::string& func) const;
-    MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *fillFromAnalytic2(TypeOfField t, int nbOfComp, const std::string& func) const;
-    MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *fillFromAnalytic3(TypeOfField t, int nbOfComp, const std::vector<std::string>& varsOrder, const std::string& func) const;
+    MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *fillFromAnalyticCompo(TypeOfField t, int nbOfComp, const std::string& func) const;
+    MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *fillFromAnalyticNamedCompo(TypeOfField t, int nbOfComp, const std::vector<std::string>& varsOrder, const std::string& func) const;
     MEDCOUPLING_EXPORT virtual MEDCouplingFieldDouble *buildOrthogonalField() const = 0;
     MEDCOUPLING_EXPORT virtual void rotate(const double *center, const double *vector, double angle) = 0;
     MEDCOUPLING_EXPORT virtual void translate(const double *vector) = 0;
@@ -144,9 +148,12 @@ namespace ParaMEDMEM
     MEDCOUPLING_EXPORT virtual void serialize(DataArrayInt *&a1, DataArrayDouble *&a2) const = 0;
     MEDCOUPLING_EXPORT virtual void unserialization(const std::vector<double>& tinyInfoD, const std::vector<int>& tinyInfo, const DataArrayInt *a1, DataArrayDouble *a2,
                                                     const std::vector<std::string>& littleStrings) = 0;
-    MEDCOUPLING_EXPORT void writeVTK(const std::string& fileName, bool isBinary=true) const;
+    MEDCOUPLING_EXPORT std::string writeVTK(const std::string& fileName, bool isBinary=true) const;
+    MEDCOUPLING_EXPORT std::string getVTKFileNameOf(const std::string& fileName) const;
+    MEDCOUPLING_EXPORT virtual std::string getVTKFileExtension() const = 0;
     /// @cond INTERNAL
     MEDCOUPLING_EXPORT void writeVTKAdvanced(const std::string& fileName, const std::string& cda, const std::string& pda, DataArrayByte *byteData) const;
+    MEDCOUPLING_EXPORT static void SplitExtension(const std::string& fileName, std::string& baseName, std::string& extension);
     /// @endcond
     MEDCOUPLING_EXPORT virtual void writeVTKLL(std::ostream& ofs, const std::string& cellData, const std::string& pointData, DataArrayByte *byteData) const = 0;
     MEDCOUPLING_EXPORT virtual void reprQuickOverview(std::ostream& stream) const = 0;