-// Copyright (C) 2007-2014 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2015 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "MEDCouplingRefCountObject.hxx"
#include "MEDCouplingAutoRefCountObjectPtr.hxx"
+#include "BoxSplittingOptions.hxx"
#include "InterpKernelException.hxx"
namespace ParaMEDMEM
{
class MEDCouplingIMesh;
class MEDCouplingUMesh;
+ class DataArrayInt;
+ class DataArrayByte;
+ class DataArrayDouble;
+ class MEDCoupling1SGTUMesh;
+ class MEDCouplingFieldDouble;
class MEDCouplingCartesianAMRMesh;
+ class MEDCouplingCartesianAMRMeshGen;
/// @cond INTERNAL
- class MEDCouplingCartesianAMRPatch : public RefCountObject
+
+ /*!
+ * This class does not inherit from TimeLabel so only const method should exist.
+ */
+ class MEDCouplingCartesianAMRPatchGen : public RefCountObject
{
public:
- MEDCouplingCartesianAMRPatch(MEDCouplingCartesianAMRMesh *mesh, const std::vector< std::pair<int,int> >& bottomLeftTopRight);
- // direct forward to _mesh
+ MEDCOUPLING_EXPORT virtual MEDCouplingCartesianAMRPatchGen *deepCpy(MEDCouplingCartesianAMRMeshGen *father) const = 0;
MEDCOUPLING_EXPORT int getNumberOfCellsRecursiveWithOverlap() const;
MEDCOUPLING_EXPORT int getNumberOfCellsRecursiveWithoutOverlap() const;
MEDCOUPLING_EXPORT int getMaxNumberOfLevelsRelativeToThis() const;
- MEDCOUPLING_EXPORT void addPatch(const std::vector< std::pair<int,int> >& bottomLeftTopRight, int factor);
+ MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getMesh() const { return _mesh; }
+ protected:
+ MEDCouplingCartesianAMRPatchGen(const MEDCouplingCartesianAMRPatchGen& other, MEDCouplingCartesianAMRMeshGen *father);
+ MEDCouplingCartesianAMRPatchGen(MEDCouplingCartesianAMRMeshGen *mesh);
+ const MEDCouplingCartesianAMRMeshGen *getMeshSafe() const;
+ MEDCouplingCartesianAMRMeshGen *getMeshSafe();
+ private:
+ std::vector<const BigMemoryObject *> getDirectChildrenWithNull() const;
+ protected:
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRMeshGen> _mesh;
+ };
+
+ /*!
+ * This class does not inherit from TimeLabel so only const method should exist.
+ */
+ class MEDCouplingCartesianAMRPatch : public MEDCouplingCartesianAMRPatchGen
+ {
+ public:
+ MEDCouplingCartesianAMRPatch(MEDCouplingCartesianAMRMeshGen *mesh, const std::vector< std::pair<int,int> >& bottomLeftTopRight);
+ MEDCouplingCartesianAMRPatch *deepCpy(MEDCouplingCartesianAMRMeshGen *father) const;
+ // direct forward to _mesh
+ MEDCOUPLING_EXPORT void addPatch(const std::vector< std::pair<int,int> >& bottomLeftTopRight, const std::vector<int>& factors);
// end of direct forward to _mesh
MEDCOUPLING_EXPORT int getNumberOfOverlapedCellsForFather() const;
+ MEDCOUPLING_EXPORT bool isInMyNeighborhood(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const;
+ MEDCOUPLING_EXPORT bool isInMyNeighborhoodExt(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const;
+ MEDCOUPLING_EXPORT bool isInMyNeighborhoodDiffLev(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const;
// basic set/get
MEDCOUPLING_EXPORT const std::vector< std::pair<int,int> >& getBLTRRange() const { return _bl_tr; }
- MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMesh *getMesh() const { return _mesh; }
+ MEDCOUPLING_EXPORT std::vector< std::pair<int,int> > getBLTRRangeRelativeToGF() const;
+ MEDCOUPLING_EXPORT std::vector<int> computeCellGridSt() const;
+ MEDCOUPLING_EXPORT static bool IsInMyNeighborhood(int ghostLev, const std::vector< std::pair<int,int> >& p1, const std::vector< std::pair<int,int> >& p2);
+ //
+ static std::vector< std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > > FindNeighborsOfSubPatchesOfSameLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2);
+ static void FindNeighborsOfSubPatchesOf(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& ret);
+ static void UpdateNeighborsOfOneWithTwo(int ghostLev, const std::vector<int>& factors, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2);
+ static void UpdateNeighborsOfOneWithTwoExt(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2);
+ static void UpdateNeighborsOfOneWithTwoMixedLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2, bool isConservative);
+ private:
+ static void ComputeZonesOfTwoRelativeToOneDiffLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, std::vector< std::pair<int,int> >& p1Zone, std::vector< std::pair<int,int> >& p2Zone, std::vector<int>& factToApplyOn2);
private:
std::size_t getHeapMemorySizeWithoutChildren() const;
- std::vector<const BigMemoryObject *> getDirectChildren() const;
+ static const MEDCouplingCartesianAMRMeshGen *FindCommonAncestor(const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, int& lev);
+ static std::vector<int> ComputeOffsetFromTwoToOne(const MEDCouplingCartesianAMRMeshGen *comAncestor, int lev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2);
+ static void UpdateNeighborsOfOneWithTwoInternal(int ghostLev, const std::vector<int>& factors, const std::vector< std::pair<int,int> >&p1 ,const std::vector< std::pair<int,int> >&p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2);
+ public:
+ static void ApplyFactorsOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, const std::vector<int>& factors);
+ static void ApplyAllGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize);
+ private:
+ MEDCouplingCartesianAMRPatch(const MEDCouplingCartesianAMRPatch& other, MEDCouplingCartesianAMRMeshGen *father);
private:
//! bottom left/top right cell range relative to \a _father
std::vector< std::pair<int,int> > _bl_tr;
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRMesh> _mesh;
};
+
+ /*!
+ * This class does not inherit from TimeLabel so only const method should exist.
+ */
+ class MEDCouplingCartesianAMRPatchGF : public MEDCouplingCartesianAMRPatchGen
+ {
+ public:
+ MEDCouplingCartesianAMRPatchGF(MEDCouplingCartesianAMRMesh *mesh);
+ MEDCouplingCartesianAMRPatchGF *deepCpy(MEDCouplingCartesianAMRMeshGen *father) const;
+ private:
+ std::size_t getHeapMemorySizeWithoutChildren() const;
+ private:
+ MEDCouplingCartesianAMRPatchGF(const MEDCouplingCartesianAMRPatchGF& other, MEDCouplingCartesianAMRMeshGen *father);
+ };
+
/// @endcond
/*!
* This class does \b NOT inherit from MEDCouplingMesh because this class overlaps image grid structured meshes to perform adaptative mesh refinement.
* But this class aggregates MEDCouplingMesh instances !
*/
- class MEDCouplingCartesianAMRMesh : public RefCountObject, public TimeLabel
+ class MEDCouplingCartesianAMRMeshGen : public RefCountObject, public TimeLabel
{
public:
- MEDCOUPLING_EXPORT static MEDCouplingCartesianAMRMesh *New(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
- const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop);
+ MEDCOUPLING_EXPORT virtual MEDCouplingCartesianAMRMeshGen *deepCpy(MEDCouplingCartesianAMRMeshGen *father) const = 0;
MEDCOUPLING_EXPORT int getSpaceDimension() const;
+ MEDCOUPLING_EXPORT const std::vector<int>& getFactors() const { return _factors; }
+ MEDCOUPLING_EXPORT void setFactors(const std::vector<int>& newFactors);
MEDCOUPLING_EXPORT int getMaxNumberOfLevelsRelativeToThis() const;
MEDCOUPLING_EXPORT int getNumberOfCellsAtCurrentLevel() const;
+ MEDCOUPLING_EXPORT int getNumberOfCellsAtCurrentLevelGhost(int ghostLev) const;
MEDCOUPLING_EXPORT int getNumberOfCellsRecursiveWithOverlap() const;
MEDCOUPLING_EXPORT int getNumberOfCellsRecursiveWithoutOverlap() const;
+ MEDCOUPLING_EXPORT const MEDCouplingIMesh *getImageMesh() const { return _mesh; }
//
- MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMesh *getFather() const;
- MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMesh *getGodFather() const;
- MEDCOUPLING_EXPORT void detachFromFather();
- MEDCOUPLING_EXPORT void addPatch(const std::vector< std::pair<int,int> >& bottomLeftTopRight, int factor);
+ MEDCOUPLING_EXPORT virtual const MEDCouplingCartesianAMRMeshGen *getFather() const = 0;
+ MEDCOUPLING_EXPORT virtual const MEDCouplingCartesianAMRMeshGen *getGodFather() const = 0;
+ MEDCOUPLING_EXPORT virtual int getAbsoluteLevel() const = 0;
+ MEDCOUPLING_EXPORT virtual void detachFromFather() = 0;
+ MEDCOUPLING_EXPORT virtual std::vector< std::pair<int,int> > positionRelativeToGodFather(std::vector<int>& st) const = 0;
+ MEDCOUPLING_EXPORT virtual int getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const = 0;
+ MEDCOUPLING_EXPORT std::vector<int> getPositionRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const;
+ MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRPatch *getPatchAtPosition(const std::vector<int>& pos) const;
+ MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getMeshAtPosition(const std::vector<int>& pos) const;
+ MEDCOUPLING_EXPORT virtual std::vector<MEDCouplingCartesianAMRPatchGen *> retrieveGridsAt(int absoluteLev) const;
+ MEDCOUPLING_EXPORT void addPatch(const std::vector< std::pair<int,int> >& bottomLeftTopRight, const std::vector<int>& factors);
+ MEDCOUPLING_EXPORT void removeAllPatches();
MEDCOUPLING_EXPORT void removePatch(int patchId);
MEDCOUPLING_EXPORT int getNumberOfPatches() const;
+ MEDCOUPLING_EXPORT void createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const std::vector<bool>& criterion, const std::vector<int>& factors);
+ MEDCOUPLING_EXPORT void createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const DataArrayByte *criterion, const std::vector<int>& factors);
+ MEDCOUPLING_EXPORT void createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const DataArrayDouble *criterion, const std::vector<int>& factors, double eps);
+ MEDCOUPLING_EXPORT int getPatchIdFromChildMesh(const MEDCouplingCartesianAMRMeshGen *mesh) const;
+ MEDCOUPLING_EXPORT std::vector< const MEDCouplingCartesianAMRPatch *> getPatches() const;
MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRPatch *getPatch(int patchId) const;
+ MEDCOUPLING_EXPORT bool isPatchInNeighborhoodOf(int patchId1, int patchId2, int ghostLev) const;
+ MEDCOUPLING_EXPORT DataArrayDouble *createCellFieldOnPatch(int patchId, const DataArrayDouble *cellFieldOnThis) const;
+ // coarse to fine
+ MEDCOUPLING_EXPORT void fillCellFieldOnPatch(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, bool isConservative=true) const;
+ MEDCOUPLING_EXPORT void fillCellFieldOnPatchGhost(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, int ghostLev, bool isConservative=true) const;
+ MEDCOUPLING_EXPORT void fillCellFieldOnPatchOnlyOnGhostZone(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, int ghostLev) const;
+ // coarse to fine + fine to fine
+ MEDCOUPLING_EXPORT void fillCellFieldOnPatchGhostAdv(int patchId, const DataArrayDouble *cellFieldOnThis, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches, bool isConservative=true) const;
+ // fine to fine
+ MEDCOUPLING_EXPORT void fillCellFieldOnPatchOnlyGhostAdv(int patchId, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches) const;
+ MEDCOUPLING_EXPORT void fillCellFieldOnPatchOnlyOnGhostZoneWith(int ghostLev, const MEDCouplingCartesianAMRPatch *patchToBeModified, const MEDCouplingCartesianAMRPatch *neighborPatch, DataArrayDouble *cellFieldOnPatch, const DataArrayDouble *cellFieldNeighbor) const;
+ // fine to coarse
+ MEDCOUPLING_EXPORT void fillCellFieldComingFromPatch(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, bool isConservative=true) const;
+ MEDCOUPLING_EXPORT void fillCellFieldComingFromPatchGhost(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, int ghostLev, bool isConservative=true) const;
+ //
+ MEDCOUPLING_EXPORT DataArrayInt *findPatchesInTheNeighborhoodOf(int patchId, int ghostLev) const;
//
MEDCOUPLING_EXPORT MEDCouplingUMesh *buildUnstructured() const;
- private:
- MEDCouplingCartesianAMRMesh(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
- const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop);
- MEDCouplingCartesianAMRMesh(MEDCouplingCartesianAMRMesh *father, MEDCouplingIMesh *mesh);
+ MEDCOUPLING_EXPORT MEDCoupling1SGTUMesh *buildMeshFromPatchEnvelop() const;
+ MEDCOUPLING_EXPORT MEDCoupling1SGTUMesh *buildMeshOfDirectChildrenOnly() const;
+ MEDCOUPLING_EXPORT MEDCouplingFieldDouble *buildCellFieldOnRecurseWithoutOverlapWithoutGhost(int ghostSz, const std::vector<const DataArrayDouble *>& recurseArrs) const;
+ MEDCOUPLING_EXPORT DataArrayDouble *extractGhostFrom(int ghostSz, const DataArrayDouble *arr) const;
+ MEDCOUPLING_EXPORT std::vector<int> getPatchIdsInTheNeighborhoodOf(int patchId, int ghostLev) const;
+ MEDCOUPLING_EXPORT std::string buildPythonDumpOfThis() const;
+ protected:
+ MEDCouplingCartesianAMRMeshGen(const MEDCouplingCartesianAMRMeshGen& other);
+ MEDCouplingCartesianAMRMeshGen(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
+ const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop);
+ MEDCouplingCartesianAMRMeshGen(MEDCouplingIMesh *mesh);
void checkPatchId(int patchId) const;
+ void checkFactorsAndIfNotSetAssign(const std::vector<int>& factors);
+ void retrieveGridsAtInternal(int lev, std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatchGen> >& grids) const;
+ static int GetGhostLevelInFineRef(int ghostLev, const std::vector<int>& factors);
+ std::vector<const DataArrayDouble *> extractSubTreeFromGlobalFlatten(const MEDCouplingCartesianAMRMeshGen *head, const std::vector<const DataArrayDouble *>& all) const;
+ void dumpPatchesOf(const std::string& varName, std::ostream& oss) const;
+ public:
+ virtual void getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector<int>& ret) const = 0;
protected:
MEDCOUPLING_EXPORT std::size_t getHeapMemorySizeWithoutChildren() const;
- MEDCOUPLING_EXPORT std::vector<const BigMemoryObject *> getDirectChildren() const;
+ MEDCOUPLING_EXPORT std::vector<const BigMemoryObject *> getDirectChildrenWithNull() const;
MEDCOUPLING_EXPORT void updateTime() const;
- private:
- MEDCouplingCartesianAMRMesh *_father;
+ protected:
MEDCouplingAutoRefCountObjectPtr<MEDCouplingIMesh> _mesh;
std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> > _patches;
+ std::vector<int> _factors;
+ };
+
+ class MEDCouplingCartesianAMRMeshSub : public MEDCouplingCartesianAMRMeshGen
+ {
+ public:
+ MEDCouplingCartesianAMRMeshSub(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh);
+ MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getFather() const;
+ MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getGodFather() const;
+ MEDCOUPLING_EXPORT int getAbsoluteLevel() const;
+ MEDCOUPLING_EXPORT void detachFromFather();
+ MEDCOUPLING_EXPORT std::vector< std::pair<int,int> > positionRelativeToGodFather(std::vector<int>& st) const;
+ MEDCOUPLING_EXPORT int getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const;
+ private:
+ MEDCouplingCartesianAMRMeshSub(const MEDCouplingCartesianAMRMeshSub& other, MEDCouplingCartesianAMRMeshGen *father);
+ MEDCouplingCartesianAMRMeshSub *deepCpy(MEDCouplingCartesianAMRMeshGen *father) const;
+ void getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector<int>& ret) const;
+ protected:
+ MEDCouplingCartesianAMRMeshGen *_father;
+ };
+
+ class MEDCouplingCartesianAMRMesh : public MEDCouplingCartesianAMRMeshGen
+ {
+ public:
+ MEDCOUPLING_EXPORT static MEDCouplingCartesianAMRMesh *New(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
+ const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop);
+ MEDCOUPLING_EXPORT static MEDCouplingCartesianAMRMesh *New(MEDCouplingIMesh *mesh);
+ MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getFather() const;
+ MEDCOUPLING_EXPORT const MEDCouplingCartesianAMRMeshGen *getGodFather() const;
+ MEDCOUPLING_EXPORT int getAbsoluteLevel() const;
+ MEDCOUPLING_EXPORT void detachFromFather();
+ MEDCOUPLING_EXPORT std::vector< std::pair<int,int> > positionRelativeToGodFather(std::vector<int>& st) const;
+ MEDCOUPLING_EXPORT int getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const;
+ MEDCOUPLING_EXPORT std::vector<MEDCouplingCartesianAMRPatchGen *> retrieveGridsAt(int absoluteLev) const;
+ MEDCouplingCartesianAMRMesh *deepCpy(MEDCouplingCartesianAMRMeshGen *father) const;
+ MEDCOUPLING_EXPORT void createPatchesFromCriterionML(const std::vector<const INTERP_KERNEL::BoxSplittingOptions *>& bso, const DataArrayDouble *criterion, const std::vector< std::vector<int> >& factors, double eps);
+ private:
+ void getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector<int>& ret) const;
+ MEDCouplingCartesianAMRMesh(const MEDCouplingCartesianAMRMesh& other);
+ MEDCouplingCartesianAMRMesh(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
+ const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop);
+ MEDCouplingCartesianAMRMesh(MEDCouplingIMesh *mesh);
+ MEDCOUPLING_EXPORT std::vector<const BigMemoryObject *> getDirectChildrenWithNull() const;
+ ~MEDCouplingCartesianAMRMesh();
};
}
