// Author : Anthony Geay
#include "MEDCouplingCartesianAMRMesh.hxx"
+#include "MEDCouplingFieldDouble.hxx"
#include "MEDCoupling1GTUMesh.hxx"
#include "MEDCouplingIMesh.hxx"
#include "MEDCouplingUMesh.hxx"
_mesh=mesh; _mesh->incrRef();
}
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRPatchGen::getMeshSafe() const
+{
+ const MEDCouplingCartesianAMRMeshGen *mesh(_mesh);
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatchGen::getMeshSafe const : the mesh is NULL !");
+ return mesh;
+}
+
+MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRPatchGen::getMeshSafe()
+{
+ MEDCouplingCartesianAMRMeshGen *mesh(_mesh);
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatchGen::getMeshSafe : the mesh is NULL !");
+ return mesh;
+}
+
std::vector<const BigMemoryObject *> MEDCouplingCartesianAMRPatchGen::getDirectChildren() const
{
std::vector<const BigMemoryObject *> ret;
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch constructor : space dimension of father and input bottomLeft/topRight size mismatches !");
}
+void MEDCouplingCartesianAMRPatch::addPatch(const std::vector< std::pair<int,int> >& bottomLeftTopRight, const std::vector<int>& factors)
+{
+ return getMeshSafe()->addPatch(bottomLeftTopRight,factors);
+}
+
int MEDCouplingCartesianAMRPatch::getNumberOfOverlapedCellsForFather() const
{
return MEDCouplingStructuredMesh::DeduceNumberOfGivenRangeInCompactFrmt(_bl_tr);
/*!
* This method states if \a other patch is in the neighborhood of \a this. The neighborhood zone is defined by \a ghostLev parameter
- * the must be >= 0.
+ * the must be >= 0. \b WARNING this method only works if \a this and \a other share the same father (no check of this will be done !).
+ * Call isInMyNeighborhoodExt to deal with 2 patches not sharing directly the same father.
*
* \param [in] other - The other patch
* \param [in] ghostLev - The size of the neighborhood zone.
* \throw if \a this or \a other are invalid (end before start).
* \throw if \a ghostLev is \b not >= 0 .
* \throw if \a this and \a other have not the same space dimension.
+ *
+ * \sa isInMyNeighborhoodExt
*/
bool MEDCouplingCartesianAMRPatch::isInMyNeighborhood(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const
{
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhood : the input patch is NULL !");
const std::vector< std::pair<int,int> >& thisp(getBLTRRange());
const std::vector< std::pair<int,int> >& otherp(other->getBLTRRange());
- std::size_t thispsize(thisp.size());
- if(thispsize!=otherp.size())
+ return IsInMyNeighborhood(ghostLev,thisp,otherp);
+}
+
+/*!
+ * This method states if \a other patch is in the neighborhood of \a this. The neighborhood zone is defined by \a ghostLev parameter
+ * the must be >= 0. This method works even if \a this and \a other does not share the same father.
+ *
+ * \param [in] other - The other patch
+ * \param [in] ghostLev - The size of the neighborhood zone.
+ *
+ * \throw if \a this or \a other are invalid (end before start).
+ * \throw if \a ghostLev is \b not >= 0 .
+ * \throw if \a this and \a other have not the same space dimension.
+ * \throw if there is not common ancestor of \a this and \a other.
+ *
+ * \sa isInMyNeighborhood
+ */
+bool MEDCouplingCartesianAMRPatch::isInMyNeighborhoodExt(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const
+{
+ if(ghostLev<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhoodExt : the size of the neighborhood must be >= 0 !");
+ if(!other)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhoodExt : the input patch is NULL !");
+ int lev;
+ const MEDCouplingCartesianAMRMeshGen *com(FindCommonAncestor(this,other,lev));//check that factors are OK
+ if(lev==0)
+ return isInMyNeighborhood(other,ghostLev);
+ std::vector<int> offset(ComputeOffsetFromTwoToOne(com,lev,this,other));
+ const std::vector< std::pair<int,int> >& thisp(getBLTRRange());
+ std::vector< std::pair<int,int> > otherp(other->getBLTRRange());
+ std::size_t sz(offset.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ otherp[i].first+=offset[i];
+ otherp[i].second+=offset[i];
+ }
+ return IsInMyNeighborhood(ghostLev,thisp,otherp);
+}
+
+bool MEDCouplingCartesianAMRPatch::IsInMyNeighborhood(int ghostLev, const std::vector< std::pair<int,int> >& p1, const std::vector< std::pair<int,int> >& p2)
+{
+ std::size_t thispsize(p1.size());
+ if(thispsize!=p2.size())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhood : the dimensions must be the same !");
for(std::size_t i=0;i<thispsize;i++)
{
- const std::pair<int,int>& thispp(thisp[i]);
- const std::pair<int,int>& otherpp(otherp[i]);
+ const std::pair<int,int>& thispp(p1[i]);
+ const std::pair<int,int>& otherpp(p2[i]);
if(thispp.second<thispp.first)
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhood : this patch is invalid !");
if(otherpp.second<otherpp.first)
return true;
}
+std::vector< std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > > MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOf(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2)
+{
+ if(!p1 || !p2)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOf : the input pointers must be not NULL !");
+ std::vector< std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > > ret;
+ std::vector< const MEDCouplingCartesianAMRPatch *> p1Work(p1->getMesh()->getPatches()),p2Work(p2->getMesh()->getPatches());
+ while(!p1Work.empty())
+ {
+ std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > retTmp;
+ std::vector<const MEDCouplingCartesianAMRPatch *> p1Work2,p2Work2;
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it1=p1Work.begin();it1!=p1Work.end();it1++)
+ {
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it2=p2Work.begin();it2!=p2Work.end();it2++)
+ {
+ if((*it1)->isInMyNeighborhoodExt(*it2,ghostLev))
+ retTmp.push_back(std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *>(*it1,*it2));
+ }
+ std::vector<const MEDCouplingCartesianAMRPatch *> tmp1((*it1)->getMesh()->getPatches());
+ p1Work2.insert(p1Work2.end(),tmp1.begin(),tmp1.end());
+ }
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it2=p2Work.begin();it2!=p2Work.end();it2++)
+ {
+ std::vector<const MEDCouplingCartesianAMRPatch *> tmp2((*it2)->getMesh()->getPatches());
+ p2Work2.insert(p2Work2.end(),tmp2.begin(),tmp2.end());
+ }
+ ret.push_back(retTmp);
+ p1Work=p1Work2;
+ p2Work=p2Work2;
+ }
+ return ret;
+}
+
+/*!
+ * \a p1 and \a p2 are expected to be neighbors (inside the \a ghostLev zone). This method updates \a dataOnP1 only in the ghost part using a part of \a dataOnP2.
+ *
+ * \saUpdateNeighborsOfOneWithTwoExt
+ */
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(int ghostLev, const std::vector<int>& factors, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{
+ const std::vector< std::pair<int,int> >& p1BLTR(p1->getBLTRRange());
+ const std::vector< std::pair<int,int> >& p2BLTR(p2->getBLTRRange());
+ UpdateNeighborsOfOneWithTwoInternal(ghostLev,factors,p1BLTR,p2BLTR,dataOnP1,dataOnP2);
+}
+
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoInternal(int ghostLev, const std::vector<int>& factors, const std::vector< std::pair<int,int> >&p1 ,const std::vector< std::pair<int,int> >&p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{//p1=[(1,4),(2,4)] p2=[(4,5),(3,4)]
+ int dim((int)factors.size());
+ std::vector<int> dimsCoarse(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(p1));//[3,2]
+ std::transform(dimsCoarse.begin(),dimsCoarse.end(),factors.begin(),dimsCoarse.begin(),std::multiplies<int>());//[12,8]
+ std::transform(dimsCoarse.begin(),dimsCoarse.end(),dimsCoarse.begin(),std::bind2nd(std::plus<int>(),2*ghostLev));//[14,10]
+ std::vector< std::pair<int,int> > rangeCoarse(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(dimsCoarse));//[(0,14),(0,10)]
+ std::vector<int> fakeFactors(dim,1);
+ //
+ std::vector< std::pair<int,int> > tmp0,tmp1,tmp2;
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(p1,p2,tmp0,false);//tmp0=[(3,4),(1,2)]
+ ApplyFactorsOnCompactFrmt(tmp0,factors);//tmp0=[(12,16),(4,8)]
+ ApplyGhostOnCompactFrmt(tmp0,ghostLev);//tmp0=[(13,17),(5,9)]
+ std::vector< std::pair<int,int> > interstRange(MEDCouplingStructuredMesh::IntersectRanges(tmp0,rangeCoarse));//interstRange=[(13,14),(5,9)]
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(p2,p1,tmp1,false);//tmp1=[(-3,0),(-1,1)]
+ ApplyFactorsOnCompactFrmt(tmp1,factors);//tmp1=[(-12,-4),(-4,0)]
+ MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt(tmp1,interstRange,tmp2,false);//tmp2=[(1,2),(1,5)]
+ //
+ std::vector< std::pair<int,int> > dimsFine(p2);
+ ApplyFactorsOnCompactFrmt(dimsFine,factors);
+ ApplyAllGhostOnCompactFrmt(dimsFine,ghostLev);
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ghostVals(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(dimsFine),dataOnP2,tmp2));
+ MEDCouplingIMesh::CondenseFineToCoarse(dimsCoarse,ghostVals,interstRange,fakeFactors,dataOnP1);
+}
+
+/*!
+ * Idem than UpdateNeighborsOfOneWithTwo, except that here \a p1 and \a p2 are not sharing the same direct father.
+ *
+ * \sa UpdateNeighborsOfOneWithTwo
+ */
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoExt(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{
+ const std::vector< std::pair<int,int> >& p1BLTR(p1->getBLTRRange());//p1BLTR=[(10,12),(5,8)]
+ std::vector< std::pair<int,int> > p2BLTR(p2->getBLTRRange());//p2BLTR=[(0,1),(0,5)]
+ int lev(0);
+ const MEDCouplingCartesianAMRMeshGen *ca(FindCommonAncestor(p1,p2,lev));
+ std::vector<int> offset(ComputeOffsetFromTwoToOne(ca,lev,p1,p2));//[12,4]
+ p2BLTR=MEDCouplingStructuredMesh::TranslateCompactFrmt(p2BLTR,offset);//p2BLTR=[(12,13),(4,9)]
+ UpdateNeighborsOfOneWithTwoInternal(ghostLev,p1->getMesh()->getFather()->getFactors(),p1BLTR,p2BLTR,dataOnP1,dataOnP2);
+}
+
std::size_t MEDCouplingCartesianAMRPatch::getHeapMemorySizeWithoutChildren() const
{
std::size_t ret(sizeof(MEDCouplingCartesianAMRPatch));
return ret;
}
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRPatch::FindCommonAncestor(const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, int& lev)
+{
+ const MEDCouplingCartesianAMRMeshGen *f1(p1->_mesh),*f2(p2->_mesh);
+ lev=0;
+ while(f1!=f2 || f1==0 || f2==0)
+ {
+ f1=f1->getFather(); f2=f2->getFather();
+ if(f1->getFactors()!=f2->getFactors())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindCommonAncestor : factors differ !");
+ lev++;
+ }
+ if(f1!=f2)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindCommonAncestor : no common ancestor between p1 and p2 !");
+ return f1;
+}
+
+std::vector<int> MEDCouplingCartesianAMRPatch::ComputeOffsetFromTwoToOne(const MEDCouplingCartesianAMRMeshGen *comAncestor, int lev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2)
+{
+ if(lev<=0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeOffsetFromTwoToOne : this method is useful only for lev > 0 !");
+ int zeLev(lev-1);
+ int dim(p1->getMesh()->getSpaceDimension());
+ if(p2->getMesh()->getSpaceDimension()!=dim)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeOffsetFromTwoToOne : dimension must be the same !");
+ std::vector< int > ret(dim,0);
+
+ for(int i=0;i<zeLev;i++)
+ {
+ const MEDCouplingCartesianAMRMeshGen *f1(p1->_mesh),*f2(p2->_mesh);
+ const MEDCouplingCartesianAMRPatch *p1h(0),*p2h(0);
+ for(int j=0;j<lev-i;j++)
+ {
+ const MEDCouplingCartesianAMRMeshGen *f1tmp(f1->getFather()),*f2tmp(f2->getFather());
+ int pid1(f1tmp->getPatchIdFromChildMesh(f1)),pid2(f2tmp->getPatchIdFromChildMesh(f2));
+ p1h=f1tmp->getPatch(pid1); p2h=f2tmp->getPatch(pid2);
+ f1=f1tmp; f2=f2tmp;
+ }
+ std::vector< std::pair<int,int> > p2c(p2h->getBLTRRange());
+ for(int k=0;k<dim;k++)
+ {
+ p2c[k].first+=ret[k];
+ p2c[k].second+=ret[k];
+ }
+ for(int k=0;k<dim;k++)
+ {
+ ret[k]=p2c[k].first-p1h->getBLTRRange()[k].first;
+ ret[k]*=f1->getFactors()[k];
+ }
+ }
+ return ret;
+}
+
+/*!
+ * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in refined reference.
+ * \param [in] factors - the factors per axis.
+ */
+void MEDCouplingCartesianAMRPatch::ApplyFactorsOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, const std::vector<int>& factors)
+{
+ std::size_t sz(factors.size());
+ if(sz!=partBeforeFact.size())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ApplyFactorsOnCompactFrmt : size of input vectors must be the same !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ partBeforeFact[i].first*=factors[i];
+ partBeforeFact[i].second*=factors[i];
+ }
+}
+
+/*!
+ * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
+ * \param [in] ghostSize - the ghost size of zone for all axis.
+ */
+void MEDCouplingCartesianAMRPatch::ApplyGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
+{
+ if(ghostSize<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ApplyGhostOnCompactFrmt : ghost size must be >= 0 !");
+ std::size_t sz(partBeforeFact.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ partBeforeFact[i].first+=ghostSize;
+ partBeforeFact[i].second+=ghostSize;
+ }
+}
+
+/*!
+ * This method is different than ApplyGhostOnCompactFrmt. The \a partBeforeFact parameter is enlarger contrary to ApplyGhostOnCompactFrmt.
+ *
+ * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
+ * \param [in] ghostSize - the ghost size of zone for all axis.
+ */
+void MEDCouplingCartesianAMRPatch::ApplyAllGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
+{
+ if(ghostSize<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ApplyAllGhostOnCompactFrmt : ghost size must be >= 0 !");
+ std::size_t sz(partBeforeFact.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ partBeforeFact[i].first-=ghostSize;
+ partBeforeFact[i].second+=ghostSize;
+ }
+}
+
MEDCouplingCartesianAMRPatchGF::MEDCouplingCartesianAMRPatchGF(MEDCouplingCartesianAMRMesh *mesh):MEDCouplingCartesianAMRPatchGen(mesh)
{
}
return sizeof(MEDCouplingCartesianAMRPatchGF);
}
+MEDCouplingDataForGodFather::MEDCouplingDataForGodFather(MEDCouplingCartesianAMRMesh *gf):_gf(gf),_tlc(gf)
+{
+ if(!_gf)
+ throw INTERP_KERNEL::Exception("MEDCouplingDataForGodFather constructor : A data has to be attached to a AMR Mesh instance !");
+ _gf->setData(this);
+}
+
+void MEDCouplingDataForGodFather::checkGodFatherFrozen() const
+{
+ _tlc.checkConst();
+}
+
+bool MEDCouplingDataForGodFather::changeGodFather(MEDCouplingCartesianAMRMesh *gf)
+{
+ bool ret(_tlc.keepTrackOfNewTL(gf));
+ if(ret)
+ {
+ _gf=gf;
+ }
+ return ret;
+}
+
/// @endcond
int MEDCouplingCartesianAMRMeshGen::getSpaceDimension() const
if(!_patches.empty())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::setFactors : modification of factors is not allowed when presence of patches !");
_factors=newFactors;
+ declareAsNew();
}
int MEDCouplingCartesianAMRMeshGen::getMaxNumberOfLevelsRelativeToThis() const
return ret;
}
+/*!
+ * This method returns the number of cells of \a this with the help of the MEDCouplingIMesh instance representing \a this.
+ * The patches in \a this are ignored here.
+ * \sa getNumberOfCellsAtCurrentLevelGhost, getNumberOfCellsRecursiveWithOverlap
+ */
int MEDCouplingCartesianAMRMeshGen::getNumberOfCellsAtCurrentLevel() const
{
return _mesh->getNumberOfCells();
}
+/*!
+ * This method returns the number of cells of \a this with the help of the MEDCouplingIMesh instance representing \a this enlarged by \a ghostLev size
+ * to take into account of the ghost cells for future computation.
+ * The patches in \a this are ignored here.
+ *
+ * \sa getNumberOfCellsAtCurrentLevel
+ */
+int MEDCouplingCartesianAMRMeshGen::getNumberOfCellsAtCurrentLevelGhost(int ghostLev) const
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingIMesh> tmp(_mesh->buildWithGhost(ghostLev));
+ return tmp->getNumberOfCells();
+}
+
+/*!
+ * This method returns the number of cells including the current level but \b also \b including recursively all cells of other levels
+ * starting from this. The set of cells which size is returned here are generally overlapping each other.
+ */
int MEDCouplingCartesianAMRMeshGen::getNumberOfCellsRecursiveWithOverlap() const
{
int ret(_mesh->getNumberOfCells());
return ret;
}
+/*!
+ * This method returns the max number of cells covering all the space without overlapping.
+ * It returns the number of cells of the mesh with the highest resolution.
+ * The returned value is equal to the number of cells of mesh returned by buildUnstructured.
+ *
+ * \sa buildUnstructured
+ */
int MEDCouplingCartesianAMRMeshGen::getNumberOfCellsRecursiveWithoutOverlap() const
{
int ret(_mesh->getNumberOfCells());
void MEDCouplingCartesianAMRMeshGen::detachFromFather()
{
_father=0;
+ declareAsNew();
}
/*!
MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRMeshSub> zeMesh(new MEDCouplingCartesianAMRMeshSub(this,mesh));
MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> elt(new MEDCouplingCartesianAMRPatch(zeMesh,bottomLeftTopRight));
_patches.push_back(elt);
+ declareAsNew();
}
/// @cond INTERNAL
}
for(std::vector< MEDCouplingAutoRefCountObjectPtr<InternalPatch> >::const_iterator it=listOfPatchesOK.begin();it!=listOfPatchesOK.end();it++)
addPatch((*it)->getConstPart(),factors);
+ declareAsNew();
}
/*!
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterion : the criterion DataArrayByte instance must be allocated and not NULL !");
std::vector<bool> crit(criterion->toVectorOfBool());//check that criterion has one component.
createPatchesFromCriterion(bso,crit,factors);
+ declareAsNew();
}
void MEDCouplingCartesianAMRMeshGen::removeAllPatches()
return (int)_patches.size();
}
+int MEDCouplingCartesianAMRMeshGen::getPatchIdFromChildMesh(const MEDCouplingCartesianAMRMeshGen *mesh) const
+{
+ int ret(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> >::const_iterator it=_patches.begin();it!=_patches.end();it++,ret++)
+ {
+ if((*it)->getMesh()==mesh)
+ return ret;
+ }
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPatchIdFromChildMesh : no such a mesh in my direct progeny !");
+}
+
+std::vector< const MEDCouplingCartesianAMRPatch *> MEDCouplingCartesianAMRMeshGen::getPatches() const
+{
+ std::size_t sz(_patches.size());
+ std::vector< const MEDCouplingCartesianAMRPatch *> ret(sz);
+ for(std::size_t i=0;i<sz;i++)
+ ret[i]=_patches[i];
+ return ret;
+}
+
const MEDCouplingCartesianAMRPatch *MEDCouplingCartesianAMRMeshGen::getPatch(int patchId) const
{
checkPatchId(patchId);
*/
bool MEDCouplingCartesianAMRMeshGen::isPatchInNeighborhoodOf(int patchId1, int patchId2, int ghostLev) const
{
- if(ghostLev<0)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::isPatchInNeighborhoodOf : the ghost size must be >=0 !");
const MEDCouplingCartesianAMRPatch *p1(getPatch(patchId1)),*p2(getPatch(patchId2));
- if(_factors.empty())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::isPatchInNeighborhoodOf : no factors defined !");
- int ghostLevInPatchRef;
- if(ghostLev==0)
- ghostLevInPatchRef=0;
- else
- {
- ghostLevInPatchRef=(ghostLev-1)/_factors[0]+1;
- for(std::size_t i=0;i<_factors.size();i++)
- ghostLevInPatchRef=std::max(ghostLevInPatchRef,(ghostLev-1)/_factors[i]+1);
- }
- return p1->isInMyNeighborhood(p2,ghostLevInPatchRef);
+ return p1->isInMyNeighborhood(p2,GetGhostLevelInFineRef(ghostLev,_factors));
}
/*!
MEDCouplingIMesh::SpreadCoarseToFineGhost(cellFieldOnThis,_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),ghostLev);
}
+/*!
+ * This method is equivalent to fillCellFieldOnPatchGhost except that here \b ONLY \b the \b ghost \b zone will be updated
+ * in \a cellFieldOnPatch.
+ *
+ * \param [in] patchId - The id of the patch \a cellFieldOnThis has to be put on.
+ * \param [in] cellFieldOnThis - The array of the cell field on \c this->getImageMesh() to be projected to patch having id \a patchId.
+ * \param [in,out] cellFieldOnPatch - The array of the cell field on the requested patch to be filled \b only \b in \b the \b ghost \b zone.
+ * \param [in] ghostLev - The size of the ghost zone (must be >=0 !)
+ */
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchOnlyOnGhostZone(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, int ghostLev) const
+{
+ if(!cellFieldOnThis || !cellFieldOnThis->isAllocated())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::fillCellFieldOnPatchOnlyOnGhostZone : the input cell field array is NULL or not allocated !");
+ const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
+ MEDCouplingIMesh::SpreadCoarseToFineGhostZone(cellFieldOnThis,_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),ghostLev);
+}
+
/*!
* This method is a refinement of fillCellFieldOnPatchGhost. fillCellFieldOnPatchGhost is first called.
* Then for all other patches than those pointed by \a patchId that overlap the ghost zone of the patch impact the ghost zone adequately.
* \param [in,out] cellFieldOnPatch - The array of the cell field on the requested patch to be filled.
* \param [in] ghostLev - The size of the ghost zone (must be >=0 !)
* \param [in] arrsOnPatches - \b WARNING arrsOnPatches[patchId] is \b NOT \b const. All others are const.
+ *
+ * \sa fillCellFieldOnPatchOnlyGhostAdv
*/
void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhostAdv(int patchId, const DataArrayDouble *cellFieldOnThis, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches) const
{
- int nbp(getNumberOfPatches()),dim(getSpaceDimension());
+ int nbp(getNumberOfPatches());
if(nbp!=(int)arrsOnPatches.size())
{
std::ostringstream oss; oss << "MEDCouplingCartesianAMRMesh::fillCellFieldOnPatchGhostAdv : there are " << nbp << " patches in this and " << arrsOnPatches.size() << " arrays in the last parameter !";
DataArrayDouble *theFieldToFill(const_cast<DataArrayDouble *>(arrsOnPatches[patchId]));
// first, do as usual
fillCellFieldOnPatchGhost(patchId,cellFieldOnThis,theFieldToFill,ghostLev);
- // all reference patch stuff
+ fillCellFieldOnPatchOnlyGhostAdv(patchId,ghostLev,arrsOnPatches);
+}
+
+/*!
+ * This method updates the patch with id \a patchId considering the only the all the patches in \a this to fill ghost zone.
+ * So \b warning, the DataArrayDouble instance \a arrsOnPatches[patchId] is non const.
+ *
+ * \sa getPatchIdsInTheNeighborhoodOf
+ */
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchOnlyGhostAdv(int patchId, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches) const
+{
+ int nbp(getNumberOfPatches());
+ if(nbp!=(int)arrsOnPatches.size())
+ {
+ std::ostringstream oss; oss << "MEDCouplingCartesianAMRMesh::fillCellFieldOnPatchOnlyGhostAdv : there are " << nbp << " patches in this and " << arrsOnPatches.size() << " arrays in the last parameter !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
const MEDCouplingCartesianAMRPatch *refP(getPatch(patchId));
- const std::vector< std::pair<int,int> >& refBLTR(refP->getBLTRRange());//[(1,4),(2,4)]
- std::vector<int> dimsCoarse(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(refBLTR));//[3,2]
- std::transform(dimsCoarse.begin(),dimsCoarse.end(),_factors.begin(),dimsCoarse.begin(),std::multiplies<int>());//[12,8]
- std::transform(dimsCoarse.begin(),dimsCoarse.end(),dimsCoarse.begin(),std::bind2nd(std::plus<int>(),2*ghostLev));//[14,10]
- std::vector< std::pair<int,int> > rangeCoarse(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(dimsCoarse));//[(0,14),(0,10)]
- std::vector<int> fakeFactors(dim,1);
- //
- for(int i=0;i<nbp;i++)
+ DataArrayDouble *theFieldToFill(const_cast<DataArrayDouble *>(arrsOnPatches[patchId]));
+ std::vector<int> ids(getPatchIdsInTheNeighborhoodOf(patchId,ghostLev));
+ for(std::vector<int>::const_iterator it=ids.begin();it!=ids.end();it++)
{
- if(i!=patchId)
- if(isPatchInNeighborhoodOf(i,patchId,ghostLev))
- {
- const MEDCouplingCartesianAMRPatch *otherP(getPatch(i));
- const std::vector< std::pair<int,int> >& otherBLTR(otherP->getBLTRRange());//[(4,5),(3,4)]
- std::vector< std::pair<int,int> > tmp0,tmp1,tmp2;
- MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(refBLTR,otherBLTR,tmp0,false);//tmp0=[(3,4),(1,2)]
- ApplyFactorsOnCompactFrmt(tmp0,_factors);//tmp0=[(12,16),(4,8)]
- ApplyGhostOnCompactFrmt(tmp0,ghostLev);//tmp0=[(13,17),(5,9)]
- std::vector< std::pair<int,int> > interstRange(MEDCouplingStructuredMesh::IntersectRanges(tmp0,rangeCoarse));//interstRange=[(13,14),(5,9)]
- MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(otherBLTR,refBLTR,tmp1,false);//tmp1=[(-3,0),(-1,1)]
- ApplyFactorsOnCompactFrmt(tmp1,_factors);//tmp1=[(-12,-4),(-4,0)]
- MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt(tmp1,interstRange,tmp2,false);//tmp2=[(1,2),(1,5)]
- //
- std::vector< std::pair<int,int> > dimsFine(otherBLTR);
- ApplyFactorsOnCompactFrmt(dimsFine,_factors);
- ApplyAllGhostOnCompactFrmt(dimsFine,ghostLev);
- //
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ghostVals(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(dimsFine),arrsOnPatches[i],tmp2));
- MEDCouplingIMesh::CondenseFineToCoarse(dimsCoarse,ghostVals,interstRange,fakeFactors,theFieldToFill);
- }
+ const MEDCouplingCartesianAMRPatch *otherP(getPatch(*it));
+ MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(ghostLev,_factors,refP,otherP,theFieldToFill,arrsOnPatches[*it]);
}
}
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchOnlyOnGhostZoneWith(int ghostLev, const MEDCouplingCartesianAMRPatch *patchToBeModified, const MEDCouplingCartesianAMRPatch *neighborPatch, DataArrayDouble *cellFieldOnPatch, const DataArrayDouble *cellFieldNeighbor) const
+{
+ MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(ghostLev,_factors,patchToBeModified,neighborPatch,cellFieldOnPatch,cellFieldNeighbor);
+}
+
/*!
* This method updates \a cellFieldOnThis part of values coming from the cell field \a cellFieldOnPatch lying on patch having id \a patchId.
*
return MEDCoupling1SGTUMesh::Merge1SGTUMeshes(patches);
}
+/*!
+ * This method works same as buildUnstructured except that arrays are given in input to build a field on cell in output.
+ * \return MEDCouplingFieldDouble * - a newly created instance the caller has reponsability to deal with.
+ * \sa buildUnstructured
+ */
+MEDCouplingFieldDouble *MEDCouplingCartesianAMRMeshGen::buildCellFieldOnRecurseWithoutOverlapWithoutGhost(int ghostSz, const std::vector<const DataArrayDouble *>& recurseArrs) const
+{
+ if(recurseArrs.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::buildCellFieldOnRecurseWithoutOverlapWithoutGhost : array is empty ! Should never happen !");
+ //
+ std::vector<bool> bs(_mesh->getNumberOfCells(),false);
+ std::vector<int> cgs(_mesh->getCellGridStructure());
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> > msSafe(_patches.size()+1);
+ std::size_t ii(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> >::const_iterator it=_patches.begin();it!=_patches.end();it++,ii++)
+ {
+ MEDCouplingStructuredMesh::SwitchOnIdsFrom(cgs,(*it)->getBLTRRange(),bs);
+ std::vector<const DataArrayDouble *> tmpArrs(extractSubTreeFromGlobalFlatten((*it)->getMesh(),recurseArrs));
+ msSafe[ii+1]=(*it)->getMesh()->buildCellFieldOnRecurseWithoutOverlapWithoutGhost(ghostSz,tmpArrs);
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> eltsOff(DataArrayInt::BuildListOfSwitchedOff(bs));
+ //
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret(MEDCouplingFieldDouble::New(ON_CELLS));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> arr2(extractGhostFrom(ghostSz,recurseArrs[0]));
+ arr2=arr2->selectByTupleIdSafe(eltsOff->begin(),eltsOff->end());
+ ret->setArray(arr2);
+ ret->setName(arr2->getName());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> part(_mesh->buildUnstructured());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingMesh> mesh(part->buildPartOfMySelf(eltsOff->begin(),eltsOff->end(),false));
+ ret->setMesh(mesh);
+ msSafe[0]=ret;
+ //
+ std::vector< const MEDCouplingFieldDouble * > ms(msSafe.size());
+ for(std::size_t i=0;i<msSafe.size();i++)
+ ms[i]=msSafe[i];
+ //
+ return MEDCouplingFieldDouble::MergeFields(ms);
+}
+
+/*!
+ * This method extracts from \arr arr the part inside \a arr by cutting the \a ghostSz external part.
+ * \arr is expected to be an array having a number of tuples equal to \c getImageMesh()->buildWithGhost(ghostSz).
+ */
+DataArrayDouble *MEDCouplingCartesianAMRMeshGen::extractGhostFrom(int ghostSz, const DataArrayDouble *arr) const
+{
+ std::vector<int> st(_mesh->getCellGridStructure());
+ std::vector< std::pair<int,int> > p(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(st));
+ std::transform(st.begin(),st.end(),st.begin(),std::bind2nd(std::plus<int>(),2*ghostSz));
+ MEDCouplingCartesianAMRPatch::ApplyGhostOnCompactFrmt(p,ghostSz);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(st,arr,p));
+ return ret.retn();
+}
+
+/*!
+ * This method returns all the patches in \a this not equal to \a patchId that are in neighborhood of patch with id \a patchId.
+ *
+ * \sa fillCellFieldOnPatchOnlyGhostAdv
+ */
+std::vector<int> MEDCouplingCartesianAMRMeshGen::getPatchIdsInTheNeighborhoodOf(int patchId, int ghostLev) const
+{
+ std::vector<int> ret;
+ int nbp(getNumberOfPatches());
+ //
+ for(int i=0;i<nbp;i++)
+ {
+ if(i!=patchId)
+ if(isPatchInNeighborhoodOf(i,patchId,ghostLev))
+ ret.push_back(i);
+ }
+ return ret;
+}
+
MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop):_father(0)
{
}
}
-/*!
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in refined reference.
- * \param [in] factors - the factors per axis.
- */
-void MEDCouplingCartesianAMRMeshGen::ApplyFactorsOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, const std::vector<int>& factors)
+int MEDCouplingCartesianAMRMeshGen::GetGhostLevelInFineRef(int ghostLev, const std::vector<int>& factors)
{
- std::size_t sz(factors.size());
- if(sz!=partBeforeFact.size())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyFactorsOnCompactFrmt : size of input vectors must be the same !");
- for(std::size_t i=0;i<sz;i++)
- {
- partBeforeFact[i].first*=factors[i];
- partBeforeFact[i].second*=factors[i];
- }
-}
-
-/*!
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
- * \param [in] ghostSize - the ghost size of zone for all axis.
- */
-void MEDCouplingCartesianAMRMeshGen::ApplyGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
-{
- if(ghostSize<0)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyGhostOnCompactFrmt : ghost size must be >= 0 !");
- std::size_t sz(partBeforeFact.size());
- for(std::size_t i=0;i<sz;i++)
+ if(ghostLev<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::GetGhostLevelInFineRef : the ghost size must be >=0 !");
+ if(factors.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::GetGhostLevelInFineRef : no factors defined !");
+ int ghostLevInPatchRef;
+ if(ghostLev==0)
+ ghostLevInPatchRef=0;
+ else
{
- partBeforeFact[i].first+=ghostSize;
- partBeforeFact[i].second+=ghostSize;
+ ghostLevInPatchRef=(ghostLev-1)/factors[0]+1;
+ for(std::size_t i=0;i<factors.size();i++)
+ ghostLevInPatchRef=std::max(ghostLevInPatchRef,(ghostLev-1)/factors[i]+1);
}
+ return ghostLevInPatchRef;
}
/*!
- * This method is different than ApplyGhostOnCompactFrmt
- *
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
- * \param [in] ghostSize - the ghost size of zone for all axis.
+ * This method returns a sub set of \a all. The subset is defined by the \a head in the tree defined by \a this.
+ * Elements in \a all are expected to be sorted from god father to most refined structure.
*/
-void MEDCouplingCartesianAMRMeshGen::ApplyAllGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
+std::vector<const DataArrayDouble *> MEDCouplingCartesianAMRMeshGen::extractSubTreeFromGlobalFlatten(const MEDCouplingCartesianAMRMeshGen *head, const std::vector<const DataArrayDouble *>& all) const
{
- if(ghostSize<0)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyAllGhostOnCompactFrmt : ghost size must be >= 0 !");
- std::size_t sz(partBeforeFact.size());
- for(std::size_t i=0;i<sz;i++)
+ int maxLev(getMaxNumberOfLevelsRelativeToThis());
+ std::vector<const DataArrayDouble *> ret;
+ std::vector<const MEDCouplingCartesianAMRMeshGen *> meshes(1,this);
+ std::size_t kk(0);
+ for(int i=0;i<maxLev;i++)
{
- partBeforeFact[i].first-=ghostSize;
- partBeforeFact[i].second+=ghostSize;
+ std::vector<const MEDCouplingCartesianAMRMeshGen *> meshesTmp;
+ for(std::vector<const MEDCouplingCartesianAMRMeshGen *>::const_iterator it=meshes.begin();it!=meshes.end();it++)
+ {
+ if((*it)==head || head->isObjectInTheProgeny(*it))
+ ret.push_back(all[kk]);
+ kk++;
+ std::vector< const MEDCouplingCartesianAMRPatch *> ps((*it)->getPatches());
+ for(std::vector< const MEDCouplingCartesianAMRPatch *>::const_iterator it0=ps.begin();it0!=ps.end();it0++)
+ {
+ const MEDCouplingCartesianAMRMeshGen *mesh((*it0)->getMesh());
+ meshesTmp.push_back(mesh);
+ }
+ }
+ meshes=meshesTmp;
}
+ if(kk!=all.size())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::extractSubTreeFromGlobalFlatten : the size of input vector is not compatible with number of leaves in this !");
+ return ret;
}
std::size_t MEDCouplingCartesianAMRMeshGen::getHeapMemorySizeWithoutChildren() const
return new MEDCouplingCartesianAMRMesh(meshName,spaceDim,nodeStrctStart,nodeStrctStop,originStart,originStop,dxyzStart,dxyzStop);
}
+void MEDCouplingCartesianAMRMesh::setData(MEDCouplingDataForGodFather *data)
+{
+ MEDCouplingDataForGodFather *myData(_data);
+ if(myData==data)
+ return ;
+ if(myData)
+ myData->changeGodFather(0);
+ _data=data;
+ if(data)
+ data->incrRef();
+}
+
+void MEDCouplingCartesianAMRMesh::allocData() const
+{
+ checkData();
+ _data->alloc();
+}
+
+void MEDCouplingCartesianAMRMesh::deallocData() const
+{
+ checkData();
+ _data->dealloc();
+}
+
MEDCouplingCartesianAMRMesh::MEDCouplingCartesianAMRMesh(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop):MEDCouplingCartesianAMRMeshGen(meshName,spaceDim,nodeStrctStart,nodeStrctStop,originStart,originStop,dxyzStart,dxyzStop)
{
}
+
+std::vector<const BigMemoryObject *> MEDCouplingCartesianAMRMesh::getDirectChildren() const
+{
+ std::vector<const BigMemoryObject *> ret(MEDCouplingCartesianAMRMeshGen::getDirectChildren());
+ const MEDCouplingDataForGodFather *pt(_data);
+ if(pt)
+ ret.push_back(pt);
+ return ret;
+}
+
+void MEDCouplingCartesianAMRMesh::checkData() const
+{
+ const MEDCouplingDataForGodFather *data(_data);
+ if(!data)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::checkData : no data set !");
+}
+
+MEDCouplingCartesianAMRMesh::~MEDCouplingCartesianAMRMesh()
+{
+ MEDCouplingDataForGodFather *data(_data);
+ if(data)
+ data->changeGodFather(0);
+}
