// Author : Anthony Geay
#include "MEDCouplingCartesianAMRMesh.hxx"
+#include "MEDCouplingAMRAttribute.hxx"
#include "MEDCouplingFieldDouble.hxx"
#include "MEDCoupling1GTUMesh.hxx"
#include "MEDCouplingIMesh.hxx"
_mesh=mesh; _mesh->incrRef();
}
+MEDCouplingCartesianAMRPatchGen::MEDCouplingCartesianAMRPatchGen(const MEDCouplingCartesianAMRPatchGen& other, MEDCouplingCartesianAMRMeshGen *father):RefCountObject(other),_mesh(other._mesh)
+{
+ const MEDCouplingCartesianAMRMeshGen *mesh(other._mesh);
+ if(mesh)
+ _mesh=mesh->deepCpy(father);
+}
+
const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRPatchGen::getMeshSafe() const
{
const MEDCouplingCartesianAMRMeshGen *mesh(_mesh);
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch constructor : space dimension of father and input bottomLeft/topRight size mismatches !");
}
+MEDCouplingCartesianAMRPatch *MEDCouplingCartesianAMRPatch::deepCpy(MEDCouplingCartesianAMRMeshGen *father) const
+{
+ return new MEDCouplingCartesianAMRPatch(*this,father);
+}
+
void MEDCouplingCartesianAMRPatch::addPatch(const std::vector< std::pair<int,int> >& bottomLeftTopRight, const std::vector<int>& factors)
{
return getMeshSafe()->addPatch(bottomLeftTopRight,factors);
/*!
* This method states if \a other patch is in the neighborhood of \a this. The neighborhood zone is defined by \a ghostLev parameter
- * the must be >= 0. This method works even if \a this and \a other does not share the same father.
+ * the must be >= 0. This method works even if \a this and \a other does not share the same father. But the level between their common
+ * ancestor must be the same. If they don't have the same ancestor an exception will be thrown.
*
* \param [in] other - The other patch
* \param [in] ghostLev - The size of the neighborhood zone.
* \throw if \a this and \a other have not the same space dimension.
* \throw if there is not common ancestor of \a this and \a other.
*
- * \sa isInMyNeighborhood
+ * \sa isInMyNeighborhood, isInMyNeighborhoodDiffLev
*/
bool MEDCouplingCartesianAMRPatch::isInMyNeighborhoodExt(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const
{
std::vector<int> offset(ComputeOffsetFromTwoToOne(com,lev,this,other));
const std::vector< std::pair<int,int> >& thisp(getBLTRRange());
std::vector< std::pair<int,int> > otherp(other->getBLTRRange());
- std::size_t sz(offset.size());
- for(std::size_t i=0;i<sz;i++)
- {
- otherp[i].first+=offset[i];
- otherp[i].second+=offset[i];
- }
+ otherp=MEDCouplingStructuredMesh::TranslateCompactFrmt(otherp,offset);
return IsInMyNeighborhood(ghostLev,thisp,otherp);
}
+/*!
+ * This method states if \a other patch is in the neighborhood of \a this. The neighborhood zone is defined by \a ghostLev parameter
+ * the must be >= 0. This method works even if \a this and \a other does not share the same father.
+ * \a this is expected to be more refined than \a other. That is to say lev of \a this is greater than level of \a other.
+ *
+ * \param [in] other - The other patch
+ * \param [in] ghostLev - The size of the neighborhood zone.
+ *
+ * \throw if \a this or \a other are invalid (end before start).
+ * \throw if \a ghostLev is \b not >= 0 .
+ * \throw if \a this and \a other have not the same space dimension.
+ * \throw if there is not common ancestor of \a this and \a other.
+ *
+ * \sa isInMyNeighborhoodExt
+ */
+bool MEDCouplingCartesianAMRPatch::isInMyNeighborhoodDiffLev(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const
+{
+ std::vector< std::pair<int,int> > thispp,otherpp;
+ std::vector<int> factors;
+ ComputeZonesOfTwoRelativeToOneDiffLev(ghostLev,this,other,thispp,otherpp,factors);
+ return IsInMyNeighborhood(ghostLev>0?1:0,thispp,otherpp);//1 not ghostLev ! It is not a bug ( I hope :) ) ! Because as \a this is a refinement of \a other ghostLev is supposed to be <= factors
+}
+
+std::vector<int> MEDCouplingCartesianAMRPatch::computeCellGridSt() const
+{
+ const MEDCouplingCartesianAMRMeshGen *m(getMesh());
+ if(!m)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::computeCellGridSt : no mesh held by this !");
+ const MEDCouplingCartesianAMRMeshGen *father(m->getFather());
+ if(!father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::computeCellGridSt : no father help by underlying mesh !");
+ const std::vector< std::pair<int,int> >& bltr(getBLTRRange());
+ const std::vector<int>& factors(father->getFactors());
+ std::vector<int> ret(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(bltr));
+ std::transform(ret.begin(),ret.end(),factors.begin(),ret.begin(),std::multiplies<int>());
+ return ret;
+}
+
bool MEDCouplingCartesianAMRPatch::IsInMyNeighborhood(int ghostLev, const std::vector< std::pair<int,int> >& p1, const std::vector< std::pair<int,int> >& p2)
{
std::size_t thispsize(p1.size());
return true;
}
+/*!
+ * \sa FindNeighborsOfSubPatchesOf
+ */
+std::vector< std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > > MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOfSameLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2)
+{
+ if(!p1 || !p2)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOfSameLev : the input pointers must be not NULL !");
+ std::vector< std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > > ret;
+ std::vector< const MEDCouplingCartesianAMRPatch *> p1Work(p1->getMesh()->getPatches()),p2Work(p2->getMesh()->getPatches());
+ while(!p1Work.empty())
+ {
+ std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > retTmp;
+ std::vector<const MEDCouplingCartesianAMRPatch *> p1Work2,p2Work2;
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it1=p1Work.begin();it1!=p1Work.end();it1++)
+ {
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it2=p2Work.begin();it2!=p2Work.end();it2++)
+ {
+ if((*it1)->isInMyNeighborhoodExt(*it2,ghostLev>0?1:0))//1 not ghostLev ! It is not a bug ( I hope :) ) ! Because as \a this is a refinement of \a other ghostLev is supposed to be <= factors
+ retTmp.push_back(std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *>(*it1,*it2));
+ }
+ std::vector<const MEDCouplingCartesianAMRPatch *> tmp1((*it1)->getMesh()->getPatches());
+ p1Work2.insert(p1Work2.end(),tmp1.begin(),tmp1.end());
+ }
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it2=p2Work.begin();it2!=p2Work.end();it2++)
+ {
+ std::vector<const MEDCouplingCartesianAMRPatch *> tmp2((*it2)->getMesh()->getPatches());
+ p2Work2.insert(p2Work2.end(),tmp2.begin(),tmp2.end());
+ }
+ ret.push_back(retTmp);
+ p1Work=p1Work2;
+ p2Work=p2Work2;
+ }
+ return ret;
+}
+
+/*!
+ * This method returns all pair of patches (pa,pb) so that pb is in the neighborhood of pa (size of neighborhood is \a ghostLev).
+ * pa is a refinement (a child) of \b p1 and pb is equal to \a p2. So the returned pair do not have the same level as it is the case for
+ * FindNeighborsOfSubPatchesOfSameLev.
+ *
+ * \sa FindNeighborsOfSubPatchesOfSameLev
+ */
+void MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOf(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, std::vector< std::pair<const MEDCouplingCartesianAMRPatch *, const MEDCouplingCartesianAMRPatch *> >& ret)
+{
+ if(!p1 || !p2)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOf : the input pointers must be not NULL !");
+ std::vector< const MEDCouplingCartesianAMRPatch *> p1Work(p1->getMesh()->getPatches());
+ while(!p1Work.empty())
+ {
+ std::vector<const MEDCouplingCartesianAMRPatch *> p1Work2;
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it0=p1Work.begin();it0!=p1Work.end();it0++)
+ {
+ if((*it0)->isInMyNeighborhoodDiffLev(p2,ghostLev))
+ ret.push_back(std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *>(*it0,p2));
+ std::vector<const MEDCouplingCartesianAMRPatch *> tmp2((*it0)->getMesh()->getPatches());
+ p1Work2.insert(p1Work2.end(),tmp2.begin(),tmp2.end());
+ }
+ p1Work=p1Work2;
+ }
+}
+
+/*!
+ * \a p1 and \a p2 are expected to be neighbors (inside the \a ghostLev zone). This method updates \a dataOnP1 only in the ghost part using a part of \a dataOnP2.
+ *
+ * \saUpdateNeighborsOfOneWithTwoExt
+ */
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(int ghostLev, const std::vector<int>& factors, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{
+ const std::vector< std::pair<int,int> >& p1BLTR(p1->getBLTRRange());
+ const std::vector< std::pair<int,int> >& p2BLTR(p2->getBLTRRange());
+ UpdateNeighborsOfOneWithTwoInternal(ghostLev,factors,p1BLTR,p2BLTR,dataOnP1,dataOnP2);
+}
+
+/*!
+ * Idem than UpdateNeighborsOfOneWithTwo, except that here \a p1 and \a p2 are not sharing the same direct father.
+ *
+ * \sa UpdateNeighborsOfOneWithTwo
+ */
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoExt(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{
+ const std::vector< std::pair<int,int> >& p1BLTR(p1->getBLTRRange());//p1BLTR=[(10,12),(5,8)]
+ std::vector< std::pair<int,int> > p2BLTR(p2->getBLTRRange());//p2BLTR=[(0,1),(0,5)]
+ int lev(0);
+ const MEDCouplingCartesianAMRMeshGen *ca(FindCommonAncestor(p1,p2,lev));
+ std::vector<int> offset(ComputeOffsetFromTwoToOne(ca,lev,p1,p2));//[12,4]
+ p2BLTR=MEDCouplingStructuredMesh::TranslateCompactFrmt(p2BLTR,offset);//p2BLTR=[(12,13),(4,9)]
+ UpdateNeighborsOfOneWithTwoInternal(ghostLev,p1->getMesh()->getFather()->getFactors(),p1BLTR,p2BLTR,dataOnP1,dataOnP2);
+}
+
+/*!
+ * \a p1 is expected to be more refined than \a p2. \a p1 and \a p2 have to share a common ancestor. Compared to UpdateNeighborsOfOneWithTwoExt here \a p1 and \a p2 are \b not at the same level !
+ */
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoMixedLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2, bool isConservative)
+{
+ std::vector< std::pair<int,int> > p1pp,p2pp;
+ std::vector<int> factors;
+ ComputeZonesOfTwoRelativeToOneDiffLev(ghostLev,p1,p2,p1pp,p2pp,factors);
+ //
+ std::vector<int> dimsP2NotRefined(p2->computeCellGridSt());
+ std::vector<int> dimsP2Refined(dimsP2NotRefined);
+ std::transform(dimsP2NotRefined.begin(),dimsP2NotRefined.end(),factors.begin(),dimsP2Refined.begin(),std::multiplies<int>());
+ std::vector< std::pair<int,int> > p2RefinedAbs(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(dimsP2NotRefined));
+ std::vector<int> dimsP2RefinedGhost(dimsP2Refined.size());
+ std::transform(dimsP2Refined.begin(),dimsP2Refined.end(),dimsP2RefinedGhost.begin(),std::bind2nd(std::plus<int>(),2*ghostLev));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> fineP2(DataArrayDouble::New()); fineP2->alloc(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(dimsP2RefinedGhost),dataOnP2->getNumberOfComponents());
+ MEDCouplingIMesh::SpreadCoarseToFineGhost(dataOnP2,dimsP2NotRefined,fineP2,p2RefinedAbs,factors,ghostLev);
+ if(isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(factors));
+ std::transform(fineP2->begin(),fineP2->end(),fineP2->getPointer(),std::bind2nd(std::multiplies<double>(),1./((double)fact)));
+ }
+ //
+ UpdateNeighborsOfOneWithTwoInternal(ghostLev,p1->getMesh()->getFather()->getFactors(),p1pp,p2pp,dataOnP1,fineP2);
+}
+
+/*!
+ * \a p1 is expected to be more refined than \a p2. \a p1 and \a p2 have to share a common ancestor. Compared to UpdateNeighborsOfOneWithTwoExt here \a p1 and \a p2 are \b not at the same level !
+ * This method has 3 outputs. 2 two first are the resp the position of \a p1 and \a p2 relative to \a p1. And \a factToApplyOn2 is the coeff of refinement to be applied on \a p2 to be virtualy
+ * on the same level as \a p1.
+ */
+void MEDCouplingCartesianAMRPatch::ComputeZonesOfTwoRelativeToOneDiffLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, std::vector< std::pair<int,int> >& p1Zone, std::vector< std::pair<int,int> >& p2Zone, std::vector<int>& factToApplyOn2)
+{
+ std::vector<const MEDCouplingCartesianAMRMeshGen *> ancestorsOfThis;
+ const MEDCouplingCartesianAMRMeshGen *work(p1->getMesh()),*work2(0);
+ ancestorsOfThis.push_back(work);
+ while(work)
+ {
+ work=work->getFather();
+ if(work)
+ ancestorsOfThis.push_back(work);
+ }
+ //
+ work=p2->getMesh();
+ bool found(false);
+ std::size_t levThis(0),levOther(0);
+ while(work && !found)
+ {
+ work2=work;
+ work=work->getFather();
+ if(work)
+ {
+ levOther++;
+ std::vector<const MEDCouplingCartesianAMRMeshGen *>::iterator it(std::find(ancestorsOfThis.begin(),ancestorsOfThis.end(),work));
+ if(it!=ancestorsOfThis.end())
+ {
+ levThis=std::distance(ancestorsOfThis.begin(),it);
+ found=true;
+ }
+ }
+ }
+ if(!found)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeZonesOfTwoRelativeToOneDiffLev : no common ancestor found !");
+ if(levThis<=levOther)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeZonesOfTwoRelativeToOneDiffLev : this method is not called correctly !");
+ //
+ const MEDCouplingCartesianAMRMeshGen *comAncestor(ancestorsOfThis[levThis]);
+ int idThis(comAncestor->getPatchIdFromChildMesh(ancestorsOfThis[levThis-1])),idOther(comAncestor->getPatchIdFromChildMesh(work2));
+ const MEDCouplingCartesianAMRPatch *thisp(comAncestor->getPatch(idThis)),*otherp(comAncestor->getPatch(idOther));
+ std::vector<int> offset(ComputeOffsetFromTwoToOne(comAncestor,levOther,thisp,otherp));
+ p1Zone=thisp->getBLTRRange(); p2Zone=MEDCouplingStructuredMesh::TranslateCompactFrmt(otherp->getBLTRRange(),offset);
+ factToApplyOn2.resize(p1Zone.size()); std::fill(factToApplyOn2.begin(),factToApplyOn2.end(),1);
+ //
+ std::size_t nbOfTurn(levThis-levOther);
+ for(std::size_t i=0;i<nbOfTurn;i++)
+ {
+ std::vector< std::pair<int,int> > tmp0;
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(p1Zone,p2Zone,tmp0,false);
+ p2Zone=tmp0;
+ const MEDCouplingCartesianAMRMeshGen *curAncestor(ancestorsOfThis[levThis-i]);
+ ApplyFactorsOnCompactFrmt(p2Zone,curAncestor->getFactors());
+ curAncestor=ancestorsOfThis[levThis-1-i];
+ const std::vector<int>& factors(curAncestor->getFactors());
+ std::transform(factToApplyOn2.begin(),factToApplyOn2.end(),factors.begin(),factToApplyOn2.begin(),std::multiplies<int>());
+ int tmpId(curAncestor->getPatchIdFromChildMesh(ancestorsOfThis[levThis-2-i]));
+ p1Zone=curAncestor->getPatch(tmpId)->getBLTRRange();
+ }
+}
+
std::size_t MEDCouplingCartesianAMRPatch::getHeapMemorySizeWithoutChildren() const
{
std::size_t ret(sizeof(MEDCouplingCartesianAMRPatch));
{
if(lev<=0)
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeOffsetFromTwoToOne : this method is useful only for lev > 0 !");
+ int zeLev(lev-1);
int dim(p1->getMesh()->getSpaceDimension());
if(p2->getMesh()->getSpaceDimension()!=dim)
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeOffsetFromTwoToOne : dimension must be the same !");
std::vector< int > ret(dim,0);
-
- for(int i=0;i<lev;i++)
+ for(int i=0;i<zeLev;i++)
{
const MEDCouplingCartesianAMRMeshGen *f1(p1->_mesh),*f2(p2->_mesh);
const MEDCouplingCartesianAMRPatch *p1h(0),*p2h(0);
return ret;
}
-MEDCouplingCartesianAMRPatchGF::MEDCouplingCartesianAMRPatchGF(MEDCouplingCartesianAMRMesh *mesh):MEDCouplingCartesianAMRPatchGen(mesh)
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoInternal(int ghostLev, const std::vector<int>& factors, const std::vector< std::pair<int,int> >&p1 ,const std::vector< std::pair<int,int> >&p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{//p1=[(1,4),(2,4)] p2=[(4,5),(3,4)]
+ int dim((int)factors.size());
+ std::vector<int> dimsCoarse(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(p1));//[3,2]
+ std::transform(dimsCoarse.begin(),dimsCoarse.end(),factors.begin(),dimsCoarse.begin(),std::multiplies<int>());//[12,8]
+ std::transform(dimsCoarse.begin(),dimsCoarse.end(),dimsCoarse.begin(),std::bind2nd(std::plus<int>(),2*ghostLev));//[14,10]
+ std::vector< std::pair<int,int> > rangeCoarse(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(dimsCoarse));//[(0,14),(0,10)]
+ std::vector<int> fakeFactors(dim,1);
+ //
+ std::vector< std::pair<int,int> > tmp0,tmp1,tmp2;
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(p1,p2,tmp0,false);//tmp0=[(3,4),(1,2)]
+ ApplyFactorsOnCompactFrmt(tmp0,factors);//tmp0=[(12,16),(4,8)]
+ MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(tmp0,ghostLev);//tmp0=[(13,17),(5,9)]
+ std::vector< std::pair<int,int> > interstRange(MEDCouplingStructuredMesh::IntersectRanges(tmp0,rangeCoarse));//interstRange=[(13,14),(5,9)]
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(p2,p1,tmp1,false);//tmp1=[(-3,0),(-1,1)]
+ ApplyFactorsOnCompactFrmt(tmp1,factors);//tmp1=[(-12,-4),(-4,0)]
+ MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt(tmp1,interstRange,tmp2,false);//tmp2=[(1,2),(1,5)]
+ //
+ std::vector< std::pair<int,int> > dimsFine(p2);
+ ApplyFactorsOnCompactFrmt(dimsFine,factors);
+ ApplyAllGhostOnCompactFrmt(dimsFine,ghostLev);
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ghostVals(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(dimsFine),dataOnP2,tmp2));
+ MEDCouplingIMesh::CondenseFineToCoarse(dimsCoarse,ghostVals,interstRange,fakeFactors,dataOnP1);
+}
+
+MEDCouplingCartesianAMRPatch::MEDCouplingCartesianAMRPatch(const MEDCouplingCartesianAMRPatch& other, MEDCouplingCartesianAMRMeshGen *father):MEDCouplingCartesianAMRPatchGen(other,father),_bl_tr(other._bl_tr)
{
}
-std::size_t MEDCouplingCartesianAMRPatchGF::getHeapMemorySizeWithoutChildren() const
+/*!
+ * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in refined reference.
+ * \param [in] factors - the factors per axis.
+ */
+void MEDCouplingCartesianAMRPatch::ApplyFactorsOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, const std::vector<int>& factors)
{
- return sizeof(MEDCouplingCartesianAMRPatchGF);
+ std::size_t sz(factors.size());
+ if(sz!=partBeforeFact.size())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ApplyFactorsOnCompactFrmt : size of input vectors must be the same !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ partBeforeFact[i].first*=factors[i];
+ partBeforeFact[i].second*=factors[i];
+ }
+}
+
+/*!
+ * This method is different than ApplyGhostOnCompactFrmt. The \a partBeforeFact parameter is enlarger contrary to ApplyGhostOnCompactFrmt.
+ *
+ * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
+ * \param [in] ghostSize - the ghost size of zone for all axis.
+ */
+void MEDCouplingCartesianAMRPatch::ApplyAllGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
+{
+ if(ghostSize<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ApplyAllGhostOnCompactFrmt : ghost size must be >= 0 !");
+ std::size_t sz(partBeforeFact.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ partBeforeFact[i].first-=ghostSize;
+ partBeforeFact[i].second+=ghostSize;
+ }
}
-MEDCouplingDataForGodFather::MEDCouplingDataForGodFather(MEDCouplingCartesianAMRMesh *gf):_gf(gf),_tlc(gf)
+MEDCouplingCartesianAMRPatchGF::MEDCouplingCartesianAMRPatchGF(MEDCouplingCartesianAMRMesh *mesh):MEDCouplingCartesianAMRPatchGen(mesh)
{
- if(!_gf)
- throw INTERP_KERNEL::Exception("MEDCouplingDataForGodFather constructor : A data has to be attached to a AMR Mesh instance !");
- _gf->setData(this);
}
-void MEDCouplingDataForGodFather::checkGodFatherFrozen() const
+MEDCouplingCartesianAMRPatchGF *MEDCouplingCartesianAMRPatchGF::deepCpy(MEDCouplingCartesianAMRMeshGen *father) const
{
- _tlc.checkConst();
+ return new MEDCouplingCartesianAMRPatchGF(*this,father);
}
-bool MEDCouplingDataForGodFather::changeGodFather(MEDCouplingCartesianAMRMesh *gf)
+std::size_t MEDCouplingCartesianAMRPatchGF::getHeapMemorySizeWithoutChildren() const
+{
+ return sizeof(MEDCouplingCartesianAMRPatchGF);
+}
+
+MEDCouplingCartesianAMRPatchGF::MEDCouplingCartesianAMRPatchGF(const MEDCouplingCartesianAMRPatchGF& other, MEDCouplingCartesianAMRMeshGen *father):MEDCouplingCartesianAMRPatchGen(other,father)
{
- bool ret(_tlc.keepTrackOfNewTL(gf));
- if(ret)
- {
- _gf=gf;
- }
- return ret;
}
/// @endcond
return ret;
}
-const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshGen::getFather() const
+/*!
+ * This method returns a vector of size equal to getAbsoluteLevelRelativeTo. It allows to find position an absolute position of \a this
+ * relative to \a ref (that is typically the god father).
+ *
+ * \sa getPatchAtPosition
+ */
+std::vector<int> MEDCouplingCartesianAMRMeshGen::getPositionRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const
{
- return _father;
+ if(!ref)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPositionRelativeTo : input pointer is NULL !");
+ std::vector<int> ret;
+ getPositionRelativeToInternal(ref,ret);
+ std::reverse(ret.begin(),ret.end());
+ return ret;
}
-const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshGen::getGodFather() const
+/*!
+ * \sa getPositionRelativeTo, getMeshAtPosition
+ */
+const MEDCouplingCartesianAMRPatch *MEDCouplingCartesianAMRMeshGen::getPatchAtPosition(const std::vector<int>& pos) const
{
- if(_father==0)
- return this;
- else
- return _father->getGodFather();
+ std::size_t sz(pos.size());
+ if(sz==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPatchAtPosition : empty input -> no patch by definition !");
+ int patchId(pos[0]);
+ const MEDCouplingCartesianAMRPatch *elt(getPatch(patchId));
+ if(sz==1)
+ return elt;
+ if(!elt || !elt->getMesh())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPatchAtPosition : NULL element found during walk !");
+ std::vector<int> pos2(pos.begin()+1,pos.end());
+ return elt->getMesh()->getPatchAtPosition(pos2);
}
-/*!
- * This method returns the level of \a this. 0 for god father. -1 for children of god father ...
- */
-int MEDCouplingCartesianAMRMeshGen::getAbsoluteLevel() const
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshGen::getMeshAtPosition(const std::vector<int>& pos) const
{
- if(_father==0)
- return 0;
- else
- return _father->getAbsoluteLevel()-1;
+ std::size_t sz(pos.size());
+ if(sz==0)
+ return this;
+ int patchId(pos[0]);
+ const MEDCouplingCartesianAMRPatch *elt(getPatch(patchId));
+ if(sz==1)
+ {
+ if(!elt)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getMeshAtPosition : NULL patch !");
+ return elt->getMesh();
+ }
+ if(!elt || !elt->getMesh())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPatchAtPosition : NULL element found during walk !");
+ std::vector<int> pos2(pos.begin()+1,pos.end());
+ return elt->getMesh()->getMeshAtPosition(pos2);
}
/*!
{
if(absoluteLev<0)
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::retrieveGridsAt : absolute level must be >=0 !");
- if(_father)
- return getGodFather()->retrieveGridsAt(absoluteLev);
- //
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatchGen> > rets;
- retrieveGridsAtInternal(absoluteLev,rets);
- std::vector< MEDCouplingCartesianAMRPatchGen * > ret(rets.size());
- for(std::size_t i=0;i<rets.size();i++)
- {
- ret[i]=rets[i].retn();
- }
- return ret;
-}
-
-void MEDCouplingCartesianAMRMeshGen::detachFromFather()
-{
- _father=0;
- declareAsNew();
+ return getGodFather()->retrieveGridsAt(absoluteLev);
}
/*!
/// @endcond
+void MEDCouplingCartesianAMRMeshGen::removeAllPatches()
+{
+ _patches.clear();
+ declareAsNew();
+}
+
+void MEDCouplingCartesianAMRMeshGen::removePatch(int patchId)
+{
+ checkPatchId(patchId);
+ int sz((int)_patches.size()),j(0);
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> > patches(sz-1);
+ for(int i=0;i<sz;i++)
+ if(i!=patchId)
+ patches[j++]=_patches[i];
+ (const_cast<MEDCouplingCartesianAMRMeshGen *>(_patches[patchId]->getMesh()))->detachFromFather();
+ _patches=patches;
+ declareAsNew();
+}
+
+int MEDCouplingCartesianAMRMeshGen::getNumberOfPatches() const
+{
+ return (int)_patches.size();
+}
+
/*!
* This method creates patches in \a this (by destroying the patches if any). This method uses \a criterion array as a field on cells on this level.
+ * This method only create patches at level 0 relative to \a this.
*/
void MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const std::vector<bool>& criterion, const std::vector<int>& factors)
{
int nbCells(getNumberOfCellsAtCurrentLevel());
if(nbCells!=(int)criterion.size())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterion : the number of tuples of criterion array must be equal to the number of cells at the current level !");
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion : the number of tuples of criterion array must be equal to the number of cells at the current level !");
_patches.clear();
std::vector<int> cgs(_mesh->getCellGridStructure());
std::vector< MEDCouplingAutoRefCountObjectPtr<InternalPatch> > listOfPatches,listOfPatchesOK;
/*!
* This method creates patches in \a this (by destroying the patches if any). This method uses \a criterion array as a field on cells on this level.
+ * This method only create patches at level 0 relative to \a this.
*/
void MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const DataArrayByte *criterion, const std::vector<int>& factors)
{
if(!criterion || !criterion->isAllocated())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterion : the criterion DataArrayByte instance must be allocated and not NULL !");
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion : the criterion DataArrayByte instance must be allocated and not NULL !");
std::vector<bool> crit(criterion->toVectorOfBool());//check that criterion has one component.
createPatchesFromCriterion(bso,crit,factors);
declareAsNew();
}
-void MEDCouplingCartesianAMRMeshGen::removeAllPatches()
-{
- _patches.clear();
- declareAsNew();
-}
-
-void MEDCouplingCartesianAMRMeshGen::removePatch(int patchId)
-{
- checkPatchId(patchId);
- int sz((int)_patches.size()),j(0);
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> > patches(sz-1);
- for(int i=0;i<sz;i++)
- if(i!=patchId)
- patches[j++]=_patches[i];
- (const_cast<MEDCouplingCartesianAMRMeshGen *>(_patches[patchId]->getMesh()))->detachFromFather();
- _patches=patches;
- declareAsNew();
-}
-
-int MEDCouplingCartesianAMRMeshGen::getNumberOfPatches() const
+void MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const DataArrayDouble *criterion, const std::vector<int>& factors, double eps)
{
- return (int)_patches.size();
+ if(!criterion)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion : null criterion pointer !");
+ std::vector<bool> inp(criterion->toVectorOfBool(eps));
+ createPatchesFromCriterion(bso,inp,factors);
}
int MEDCouplingCartesianAMRMeshGen::getPatchIdFromChildMesh(const MEDCouplingCartesianAMRMeshGen *mesh) const
bool MEDCouplingCartesianAMRMeshGen::isPatchInNeighborhoodOf(int patchId1, int patchId2, int ghostLev) const
{
const MEDCouplingCartesianAMRPatch *p1(getPatch(patchId1)),*p2(getPatch(patchId2));
- return p1->isInMyNeighborhood(p2,GetGhostLevelInFineRef(ghostLev,_factors));
+ return p1->isInMyNeighborhood(p2,ghostLev);
}
/*!
*
* \sa createCellFieldOnPatch, fillCellFieldComingFromPatch
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatch(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatch(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, bool isConservative) const
{
if(!cellFieldOnThis || !cellFieldOnThis->isAllocated())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createCellFieldOnPatch : the input cell field array is NULL or not allocated !");
const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
MEDCouplingIMesh::SpreadCoarseToFine(cellFieldOnThis,_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors());
+ if(isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(getFactors()));
+ std::transform(cellFieldOnPatch->begin(),cellFieldOnPatch->end(),cellFieldOnPatch->getPointer(),std::bind2nd(std::multiplies<double>(),1./((double)fact)));
+ }
}
/*!
*
* \sa fillCellFieldOnPatch, fillCellFieldOnPatchGhostAdv
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhost(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, int ghostLev) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhost(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, int ghostLev, bool isConservative) const
{
if(!cellFieldOnThis || !cellFieldOnThis->isAllocated())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createCellFieldOnPatchGhost : the input cell field array is NULL or not allocated !");
const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
MEDCouplingIMesh::SpreadCoarseToFineGhost(cellFieldOnThis,_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),ghostLev);
+ if(isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(getFactors()));
+ std::transform(cellFieldOnPatch->begin(),cellFieldOnPatch->end(),cellFieldOnPatch->getPointer(),std::bind2nd(std::multiplies<double>(),1./((double)fact)));
+ }
}
/*!
*
* \sa fillCellFieldOnPatchOnlyGhostAdv
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhostAdv(int patchId, const DataArrayDouble *cellFieldOnThis, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhostAdv(int patchId, const DataArrayDouble *cellFieldOnThis, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches, bool isConservative) const
{
int nbp(getNumberOfPatches());
if(nbp!=(int)arrsOnPatches.size())
}
DataArrayDouble *theFieldToFill(const_cast<DataArrayDouble *>(arrsOnPatches[patchId]));
// first, do as usual
- fillCellFieldOnPatchGhost(patchId,cellFieldOnThis,theFieldToFill,ghostLev);
+ fillCellFieldOnPatchGhost(patchId,cellFieldOnThis,theFieldToFill,ghostLev,isConservative);
fillCellFieldOnPatchOnlyGhostAdv(patchId,ghostLev,arrsOnPatches);
}
*/
void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchOnlyGhostAdv(int patchId, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches) const
{
- int nbp(getNumberOfPatches()),dim(getSpaceDimension());
+ int nbp(getNumberOfPatches());
if(nbp!=(int)arrsOnPatches.size())
{
std::ostringstream oss; oss << "MEDCouplingCartesianAMRMesh::fillCellFieldOnPatchOnlyGhostAdv : there are " << nbp << " patches in this and " << arrsOnPatches.size() << " arrays in the last parameter !";
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
- DataArrayDouble *theFieldToFill(const_cast<DataArrayDouble *>(arrsOnPatches[patchId]));
const MEDCouplingCartesianAMRPatch *refP(getPatch(patchId));
- const std::vector< std::pair<int,int> >& refBLTR(refP->getBLTRRange());//[(1,4),(2,4)]
- std::vector<int> dimsCoarse(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(refBLTR));//[3,2]
- std::transform(dimsCoarse.begin(),dimsCoarse.end(),_factors.begin(),dimsCoarse.begin(),std::multiplies<int>());//[12,8]
- std::transform(dimsCoarse.begin(),dimsCoarse.end(),dimsCoarse.begin(),std::bind2nd(std::plus<int>(),2*ghostLev));//[14,10]
- std::vector< std::pair<int,int> > rangeCoarse(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(dimsCoarse));//[(0,14),(0,10)]
- std::vector<int> fakeFactors(dim,1),ids(getPatchIdsInTheNeighborhoodOf(patchId,ghostLev));
- //
+ DataArrayDouble *theFieldToFill(const_cast<DataArrayDouble *>(arrsOnPatches[patchId]));
+ std::vector<int> ids(getPatchIdsInTheNeighborhoodOf(patchId,ghostLev));
for(std::vector<int>::const_iterator it=ids.begin();it!=ids.end();it++)
{
const MEDCouplingCartesianAMRPatch *otherP(getPatch(*it));
- const std::vector< std::pair<int,int> >& otherBLTR(otherP->getBLTRRange());//[(4,5),(3,4)]
- std::vector< std::pair<int,int> > tmp0,tmp1,tmp2;
- MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(refBLTR,otherBLTR,tmp0,false);//tmp0=[(3,4),(1,2)]
- ApplyFactorsOnCompactFrmt(tmp0,_factors);//tmp0=[(12,16),(4,8)]
- ApplyGhostOnCompactFrmt(tmp0,ghostLev);//tmp0=[(13,17),(5,9)]
- std::vector< std::pair<int,int> > interstRange(MEDCouplingStructuredMesh::IntersectRanges(tmp0,rangeCoarse));//interstRange=[(13,14),(5,9)]
- MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(otherBLTR,refBLTR,tmp1,false);//tmp1=[(-3,0),(-1,1)]
- ApplyFactorsOnCompactFrmt(tmp1,_factors);//tmp1=[(-12,-4),(-4,0)]
- MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt(tmp1,interstRange,tmp2,false);//tmp2=[(1,2),(1,5)]
- //
- std::vector< std::pair<int,int> > dimsFine(otherBLTR);
- ApplyFactorsOnCompactFrmt(dimsFine,_factors);
- ApplyAllGhostOnCompactFrmt(dimsFine,ghostLev);
- //
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ghostVals(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(dimsFine),arrsOnPatches[*it],tmp2));
- MEDCouplingIMesh::CondenseFineToCoarse(dimsCoarse,ghostVals,interstRange,fakeFactors,theFieldToFill);
+ MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(ghostLev,_factors,refP,otherP,theFieldToFill,arrsOnPatches[*it]);
}
}
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchOnlyOnGhostZoneWith(int ghostLev, const MEDCouplingCartesianAMRPatch *patchToBeModified, const MEDCouplingCartesianAMRPatch *neighborPatch, DataArrayDouble *cellFieldOnPatch, const DataArrayDouble *cellFieldNeighbor) const
+{
+ MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(ghostLev,_factors,patchToBeModified,neighborPatch,cellFieldOnPatch,cellFieldNeighbor);
+}
+
/*!
* This method updates \a cellFieldOnThis part of values coming from the cell field \a cellFieldOnPatch lying on patch having id \a patchId.
*
* \param [in] patchId - The id of the patch \a cellFieldOnThis has to be put on.
* \param [in] cellFieldOnPatch - The array of the cell field on patch with id \a patchId.
* \param [in,out] cellFieldOnThis The array of the cell field on \a this to be updated only on the part concerning the patch with id \a patchId.
+ * \param [in] isConservative - true if the field needs to be conserved. false if maximum principle has to be applied.
*
* \throw if \a patchId is not in [ 0 , \c this->getNumberOfPatches() )
* \throw if \a cellFieldOnPatch is NULL or not allocated
* \sa createCellFieldOnPatch, MEDCouplingIMesh::CondenseFineToCoarse,fillCellFieldComingFromPatchGhost
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldComingFromPatch(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldComingFromPatch(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, bool isConservative) const
{
if(!cellFieldOnPatch || !cellFieldOnPatch->isAllocated())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::fillCellFieldComingFromPatch : the input cell field array is NULL or not allocated !");
const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
MEDCouplingIMesh::CondenseFineToCoarse(_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),cellFieldOnThis);
+ if(!isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(getFactors()));
+ MEDCouplingStructuredMesh::MultiplyPartOf(_mesh->getCellGridStructure(),patch->getBLTRRange(),1./((double)fact),cellFieldOnThis);
+ }
}
/*!
* \param [in] cellFieldOnPatch - The array of the cell field on patch with id \a patchId.
* \param [in,out] cellFieldOnThis The array of the cell field on \a this to be updated only on the part concerning the patch with id \a patchId.
* \param [in] ghostLev The size of ghost zone (must be >= 0 !)
+ * \param [in] isConservative - true if the field needs to be conserved. false if maximum principle has to be applied.
*
* \throw if \a patchId is not in [ 0 , \c this->getNumberOfPatches() )
* \throw if \a cellFieldOnPatch is NULL or not allocated
* \sa fillCellFieldComingFromPatch
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldComingFromPatchGhost(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, int ghostLev) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldComingFromPatchGhost(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, int ghostLev, bool isConservative) const
{
if(!cellFieldOnPatch || !cellFieldOnPatch->isAllocated())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::fillCellFieldComingFromPatchGhost : the input cell field array is NULL or not allocated !");
const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
MEDCouplingIMesh::CondenseFineToCoarseGhost(_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),cellFieldOnThis,ghostLev);
+ if(!isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(getFactors()));
+ MEDCouplingStructuredMesh::MultiplyPartOfByGhost(_mesh->getCellGridStructure(),patch->getBLTRRange(),ghostLev,1./((double)fact),cellFieldOnThis);
+ }
}
/*!
std::vector<int> st(_mesh->getCellGridStructure());
std::vector< std::pair<int,int> > p(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(st));
std::transform(st.begin(),st.end(),st.begin(),std::bind2nd(std::plus<int>(),2*ghostSz));
- ApplyGhostOnCompactFrmt(p,ghostSz);
+ MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(p,ghostSz);
MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(st,arr,p));
return ret.retn();
}
return ret;
}
+/*!
+ * This method returns a dump python of \a this. It is useful for users of createPatchesFromCriterion method for debugging.
+ *
+ * \sa dumpPatchesOf, createPatchesFromCriterion, createPatchesFromCriterionML
+ */
+std::string MEDCouplingCartesianAMRMeshGen::buildPythonDumpOfThis() const
+{
+ std::ostringstream oss;
+ oss << "amr=MEDCouplingCartesianAMRMesh(\""<< getImageMesh()->getName() << "\"," << getSpaceDimension() << ",[";
+ std::vector<int> ngs(getImageMesh()->getNodeGridStructure());
+ std::vector<double> orig(getImageMesh()->getOrigin()),dxyz(getImageMesh()->getDXYZ());
+ std::copy(ngs.begin(),ngs.end(),std::ostream_iterator<int>(oss,","));
+ oss << "],[";
+ std::copy(orig.begin(),orig.end(),std::ostream_iterator<double>(oss,","));
+ oss << "],[";
+ std::copy(dxyz.begin(),dxyz.end(),std::ostream_iterator<double>(oss,","));
+ oss << "])\n";
+ dumpPatchesOf("amr",oss);
+ return oss.str();
+}
+
+MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(const MEDCouplingCartesianAMRMeshGen& other):RefCountObject(other),_mesh(other._mesh),_patches(other._patches),_factors(other._factors)
+{
+ const MEDCouplingIMesh *mesh(other._mesh);
+ if(mesh)
+ _mesh=static_cast<MEDCouplingIMesh *>(mesh->deepCpy());
+ std::size_t sz(other._patches.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCouplingCartesianAMRPatch *patch(other._patches[i]);
+ if(patch)
+ _patches[i]=patch->deepCpy(this);
+ }
+}
+
MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
- const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop):_father(0)
+ const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop)
{
_mesh=MEDCouplingIMesh::New(meshName,spaceDim,nodeStrctStart,nodeStrctStop,originStart,originStop,dxyzStart,dxyzStop);
}
-MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh):_father(father)
+MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(MEDCouplingIMesh *mesh)
{
- if(!_father)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen(MEDCouplingIMesh *mesh) constructor : empty father !");
if(!mesh)
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen(MEDCouplingIMesh *mesh) constructor : The input mesh is null !");
mesh->checkCoherency();
}
}
-/*!
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in refined reference.
- * \param [in] factors - the factors per axis.
- */
-void MEDCouplingCartesianAMRMeshGen::ApplyFactorsOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, const std::vector<int>& factors)
-{
- std::size_t sz(factors.size());
- if(sz!=partBeforeFact.size())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyFactorsOnCompactFrmt : size of input vectors must be the same !");
- for(std::size_t i=0;i<sz;i++)
- {
- partBeforeFact[i].first*=factors[i];
- partBeforeFact[i].second*=factors[i];
- }
-}
-
-/*!
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
- * \param [in] ghostSize - the ghost size of zone for all axis.
- */
-void MEDCouplingCartesianAMRMeshGen::ApplyGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
-{
- if(ghostSize<0)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyGhostOnCompactFrmt : ghost size must be >= 0 !");
- std::size_t sz(partBeforeFact.size());
- for(std::size_t i=0;i<sz;i++)
- {
- partBeforeFact[i].first+=ghostSize;
- partBeforeFact[i].second+=ghostSize;
- }
-}
-
-/*!
- * This method is different than ApplyGhostOnCompactFrmt. The \a partBeforeFact parameter is enlarger contrary to ApplyGhostOnCompactFrmt.
- *
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
- * \param [in] ghostSize - the ghost size of zone for all axis.
- */
-void MEDCouplingCartesianAMRMeshGen::ApplyAllGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
-{
- if(ghostSize<0)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyAllGhostOnCompactFrmt : ghost size must be >= 0 !");
- std::size_t sz(partBeforeFact.size());
- for(std::size_t i=0;i<sz;i++)
- {
- partBeforeFact[i].first-=ghostSize;
- partBeforeFact[i].second+=ghostSize;
- }
-}
-
int MEDCouplingCartesianAMRMeshGen::GetGhostLevelInFineRef(int ghostLev, const std::vector<int>& factors)
{
if(ghostLev<0)
return ret;
}
+void MEDCouplingCartesianAMRMeshGen::dumpPatchesOf(const std::string& varName, std::ostream& oss) const
+{
+ std::size_t j(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> >::const_iterator it=_patches.begin();it!=_patches.end();it++)
+ {
+ const MEDCouplingCartesianAMRPatch *patch(*it);
+ if(patch)
+ {
+ std::ostringstream oss2; oss2 << varName << ".addPatch([";
+ const std::vector< std::pair<int,int> >& bltr(patch->getBLTRRange());
+ std::size_t sz(bltr.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ oss2 << "(" << bltr[i].first << "," << bltr[i].second << ")";
+ if(i!=sz-1)
+ oss2 << ",";
+ }
+ oss2 << "],[";
+ std::copy(_factors.begin(),_factors.end(),std::ostream_iterator<int>(oss2,","));
+ oss2 << "])\n";
+ oss << oss2.str();
+ std::ostringstream oss3; oss3 << varName << "[" << j++ << "]";
+ patch->getMesh()->dumpPatchesOf(oss3.str(),oss);
+ }
+ }
+}
+
std::size_t MEDCouplingCartesianAMRMeshGen::getHeapMemorySizeWithoutChildren() const
{
return sizeof(MEDCouplingCartesianAMRMeshGen);
}
}
-MEDCouplingCartesianAMRMeshSub::MEDCouplingCartesianAMRMeshSub(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh):MEDCouplingCartesianAMRMeshGen(father,mesh)
+MEDCouplingCartesianAMRMeshSub::MEDCouplingCartesianAMRMeshSub(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh):MEDCouplingCartesianAMRMeshGen(mesh),_father(father)
+{
+ if(!_father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh) constructor : empty father !");
+}
+
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshSub::getFather() const
+{
+ return _father;
+}
+
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshSub::getGodFather() const
+{
+ if(!_father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub::getGodFather : Impossible to find a god father because there is a hole in chain !");
+ return _father->getGodFather();
+}
+
+/*!
+ * This method returns the level of \a this. 0 for god father. 1 for children of god father ...
+ */
+int MEDCouplingCartesianAMRMeshSub::getAbsoluteLevel() const
+{
+ if(!_father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub::getAbsoluteLevel : Impossible to find a god father because there is a hole in chain !");
+ return _father->getAbsoluteLevel()+1;
+}
+
+void MEDCouplingCartesianAMRMeshSub::detachFromFather()
+{
+ _father=0;
+ declareAsNew();
+}
+
+int MEDCouplingCartesianAMRMeshSub::getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const
+{
+ if(this==ref)
+ return 0;
+ if(_father==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub::getAbsoluteLevelRelativeTo : ref is not in the progeny of this !");
+ else
+ return _father->getAbsoluteLevelRelativeTo(ref)+1;
+}
+
+MEDCouplingCartesianAMRMeshSub::MEDCouplingCartesianAMRMeshSub(const MEDCouplingCartesianAMRMeshSub& other, MEDCouplingCartesianAMRMeshGen *father):MEDCouplingCartesianAMRMeshGen(other),_father(father)
{
}
+MEDCouplingCartesianAMRMeshSub *MEDCouplingCartesianAMRMeshSub::deepCpy(MEDCouplingCartesianAMRMeshGen *fath) const
+{
+ return new MEDCouplingCartesianAMRMeshSub(*this,fath);
+}
+
+/*!
+ * \sa getPositionRelativeTo
+ */
+void MEDCouplingCartesianAMRMeshSub::getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector<int>& ret) const
+{
+ if(this==ref)
+ return ;
+ if(!_father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub::getPositionRelativeToInternal : ref is not in the progeny of this !");
+ int myId(_father->getPatchIdFromChildMesh(this));
+ ret.push_back(myId);
+ _father->getPositionRelativeToInternal(ref,ret);
+}
+
MEDCouplingCartesianAMRMesh *MEDCouplingCartesianAMRMesh::New(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop)
{
return new MEDCouplingCartesianAMRMesh(meshName,spaceDim,nodeStrctStart,nodeStrctStop,originStart,originStop,dxyzStart,dxyzStop);
}
-void MEDCouplingCartesianAMRMesh::setData(MEDCouplingDataForGodFather *data)
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMesh::getFather() const
+{
+ //I'm god father ! No father !
+ return 0;
+}
+
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMesh::getGodFather() const
+{
+ return this;
+}
+
+int MEDCouplingCartesianAMRMesh::getAbsoluteLevel() const
+{
+ return 0;
+}
+
+void MEDCouplingCartesianAMRMesh::detachFromFather()
+{//not a bug - do nothing
+}
+
+int MEDCouplingCartesianAMRMesh::getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const
+{
+ if(this==ref)
+ return 0;
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::getAbsoluteLevelRelativeTo : ref is not in the progeny of this !");
+}
+
+std::vector<MEDCouplingCartesianAMRPatchGen *> MEDCouplingCartesianAMRMesh::retrieveGridsAt(int absoluteLev) const
{
- MEDCouplingDataForGodFather *myData(_data);
- if(myData==data)
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatchGen> > rets;
+ retrieveGridsAtInternal(absoluteLev,rets);
+ std::vector< MEDCouplingCartesianAMRPatchGen * > ret(rets.size());
+ for(std::size_t i=0;i<rets.size();i++)
+ {
+ ret[i]=rets[i].retn();
+ }
+ return ret;
+}
+
+MEDCouplingCartesianAMRMesh *MEDCouplingCartesianAMRMesh::deepCpy(MEDCouplingCartesianAMRMeshGen *father) const
+{
+ if(father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::deepCpy : specifying a not null father for a God Father object !");
+ return new MEDCouplingCartesianAMRMesh(*this);
+}
+
+/*!
+ * This method creates a multi level patches split at once.
+ * This method calls as times as size of \a bso createPatchesFromCriterion. Size of \a bso and size of \a factors must be the same !
+ * \b WARNING, after the call the number of levels in \a this is equal to bso.size() + 1 !
+ *
+ * \param [in] bso
+ * \param [in] criterion
+ * \param [in] factors
+ * \param [in] eps - See DataArrayDouble::toVectorOfBool for more information about the semantic of eps.
+ *
+ * \sa createPatchesFromCriterion
+ */
+void MEDCouplingCartesianAMRMesh::createPatchesFromCriterionML(const std::vector<const INTERP_KERNEL::BoxSplittingOptions *>& bso, const DataArrayDouble *criterion, const std::vector< std::vector<int> >& factors, double eps)
+{
+ std::size_t nbOfLevs(bso.size());
+ if(nbOfLevs!=factors.size())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterionML : size of vectors must be the same !");
+ if(nbOfLevs==0)
return ;
- if(myData)
- myData->changeGodFather(0);
- _data=data;
- if(data)
- data->incrRef();
+ if(!bso[0])
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterionML : pointers in 1st arg must be not NULL !");
+ createPatchesFromCriterion(*bso[0],criterion,factors[0],eps);
+ for(std::size_t i=1;i<nbOfLevs;i++)
+ {
+ if(!bso[i])
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterionML : presence of a NULL BoxSplittingOptions in input vector !");
+ //
+ std::vector<MEDCouplingCartesianAMRPatchGen *> elts(retrieveGridsAt((int)(i)));
+ std::size_t sz(elts.size());
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatchGen> > elts2(sz);
+ std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> > elts3(sz);
+ for(std::size_t ii=0;ii<sz;ii++)
+ elts2[ii]=elts[ii];
+ //
+ static const char TMP_STR[]="TMP";
+ std::vector< std::pair<std::string,int> > fieldNames(1); fieldNames[0].first=TMP_STR; fieldNames[0].second=1;
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingAMRAttribute> att(MEDCouplingAMRAttribute::New(this,fieldNames,0));
+ att->alloc();
+ DataArrayDouble *tmpDa(const_cast<DataArrayDouble *>(att->getFieldOn(this,TMP_STR)));
+ tmpDa->cpyFrom(*criterion);
+ att->synchronizeCoarseToFine();
+ for(std::size_t ii=0;ii<sz;ii++)
+ {
+ const DataArrayDouble *critOnLeaf(att->getFieldOn(const_cast<MEDCouplingCartesianAMRMeshGen *>(elts[ii]->getMesh()),TMP_STR));
+ elts3[ii]=const_cast<DataArrayDouble *>(critOnLeaf); elts3[ii]->incrRef();
+ }
+ att=0;
+ for(std::size_t ii=0;ii<sz;ii++)
+ const_cast<MEDCouplingCartesianAMRMeshGen *>(elts[ii]->getMesh())->createPatchesFromCriterion(*bso[i],elts3[ii],factors[i],eps);
+ }
}
-void MEDCouplingCartesianAMRMesh::allocData(int ghostLev) const
+void MEDCouplingCartesianAMRMesh::getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector<int>& ret) const
{
- checkData();
- _data->alloc(ghostLev);
+
}
-void MEDCouplingCartesianAMRMesh::deallocData() const
+MEDCouplingCartesianAMRMesh::MEDCouplingCartesianAMRMesh(const MEDCouplingCartesianAMRMesh& other):MEDCouplingCartesianAMRMeshGen(other)
{
- checkData();
- _data->dealloc();
}
MEDCouplingCartesianAMRMesh::MEDCouplingCartesianAMRMesh(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
std::vector<const BigMemoryObject *> MEDCouplingCartesianAMRMesh::getDirectChildren() const
{
std::vector<const BigMemoryObject *> ret(MEDCouplingCartesianAMRMeshGen::getDirectChildren());
- const MEDCouplingDataForGodFather *pt(_data);
- if(pt)
- ret.push_back(pt);
return ret;
}
-void MEDCouplingCartesianAMRMesh::checkData() const
-{
- const MEDCouplingDataForGodFather *data(_data);
- if(!data)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::checkData : no data set !");
-}
-
MEDCouplingCartesianAMRMesh::~MEDCouplingCartesianAMRMesh()
{
- MEDCouplingDataForGodFather *data(_data);
- if(data)
- data->changeGodFather(0);
}
