// Author : Anthony Geay
#include "MEDCouplingCartesianAMRMesh.hxx"
+#include "MEDCouplingAMRAttribute.hxx"
+#include "MEDCouplingFieldDouble.hxx"
#include "MEDCoupling1GTUMesh.hxx"
#include "MEDCouplingIMesh.hxx"
#include "MEDCouplingUMesh.hxx"
_mesh=mesh; _mesh->incrRef();
}
+MEDCouplingCartesianAMRPatchGen::MEDCouplingCartesianAMRPatchGen(const MEDCouplingCartesianAMRPatchGen& other, MEDCouplingCartesianAMRMeshGen *father):RefCountObject(other),_mesh(other._mesh)
+{
+ const MEDCouplingCartesianAMRMeshGen *mesh(other._mesh);
+ if(mesh)
+ _mesh=mesh->deepCpy(father);
+}
+
const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRPatchGen::getMeshSafe() const
{
const MEDCouplingCartesianAMRMeshGen *mesh(_mesh);
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch constructor : space dimension of father and input bottomLeft/topRight size mismatches !");
}
+MEDCouplingCartesianAMRPatch *MEDCouplingCartesianAMRPatch::deepCpy(MEDCouplingCartesianAMRMeshGen *father) const
+{
+ return new MEDCouplingCartesianAMRPatch(*this,father);
+}
+
void MEDCouplingCartesianAMRPatch::addPatch(const std::vector< std::pair<int,int> >& bottomLeftTopRight, const std::vector<int>& factors)
{
return getMeshSafe()->addPatch(bottomLeftTopRight,factors);
/*!
* This method states if \a other patch is in the neighborhood of \a this. The neighborhood zone is defined by \a ghostLev parameter
- * the must be >= 0.
+ * the must be >= 0. \b WARNING this method only works if \a this and \a other share the same father (no check of this will be done !).
+ * Call isInMyNeighborhoodExt to deal with 2 patches not sharing directly the same father.
*
* \param [in] other - The other patch
* \param [in] ghostLev - The size of the neighborhood zone.
* \throw if \a this or \a other are invalid (end before start).
* \throw if \a ghostLev is \b not >= 0 .
* \throw if \a this and \a other have not the same space dimension.
+ *
+ * \sa isInMyNeighborhoodExt
*/
bool MEDCouplingCartesianAMRPatch::isInMyNeighborhood(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const
{
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhood : the input patch is NULL !");
const std::vector< std::pair<int,int> >& thisp(getBLTRRange());
const std::vector< std::pair<int,int> >& otherp(other->getBLTRRange());
- std::size_t thispsize(thisp.size());
- if(thispsize!=otherp.size())
+ return IsInMyNeighborhood(ghostLev,thisp,otherp);
+}
+
+/*!
+ * This method states if \a other patch is in the neighborhood of \a this. The neighborhood zone is defined by \a ghostLev parameter
+ * the must be >= 0. This method works even if \a this and \a other does not share the same father. But the level between their common
+ * ancestor must be the same. If they don't have the same ancestor an exception will be thrown.
+ *
+ * \param [in] other - The other patch
+ * \param [in] ghostLev - The size of the neighborhood zone.
+ *
+ * \throw if \a this or \a other are invalid (end before start).
+ * \throw if \a ghostLev is \b not >= 0 .
+ * \throw if \a this and \a other have not the same space dimension.
+ * \throw if there is not common ancestor of \a this and \a other.
+ *
+ * \sa isInMyNeighborhood, isInMyNeighborhoodDiffLev
+ */
+bool MEDCouplingCartesianAMRPatch::isInMyNeighborhoodExt(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const
+{
+ if(ghostLev<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhoodExt : the size of the neighborhood must be >= 0 !");
+ if(!other)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhoodExt : the input patch is NULL !");
+ int lev;
+ const MEDCouplingCartesianAMRMeshGen *com(FindCommonAncestor(this,other,lev));//check that factors are OK
+ if(lev==0)
+ return isInMyNeighborhood(other,ghostLev);
+ std::vector<int> offset(ComputeOffsetFromTwoToOne(com,lev,this,other));
+ const std::vector< std::pair<int,int> >& thisp(getBLTRRange());
+ std::vector< std::pair<int,int> > otherp(other->getBLTRRange());
+ otherp=MEDCouplingStructuredMesh::TranslateCompactFrmt(otherp,offset);
+ return IsInMyNeighborhood(ghostLev,thisp,otherp);
+}
+
+/*!
+ * This method states if \a other patch is in the neighborhood of \a this. The neighborhood zone is defined by \a ghostLev parameter
+ * the must be >= 0. This method works even if \a this and \a other does not share the same father.
+ * \a this is expected to be more refined than \a other. That is to say lev of \a this is greater than level of \a other.
+ *
+ * \param [in] other - The other patch
+ * \param [in] ghostLev - The size of the neighborhood zone.
+ *
+ * \throw if \a this or \a other are invalid (end before start).
+ * \throw if \a ghostLev is \b not >= 0 .
+ * \throw if \a this and \a other have not the same space dimension.
+ * \throw if there is not common ancestor of \a this and \a other.
+ *
+ * \sa isInMyNeighborhoodExt
+ */
+bool MEDCouplingCartesianAMRPatch::isInMyNeighborhoodDiffLev(const MEDCouplingCartesianAMRPatch *other, int ghostLev) const
+{
+ std::vector< std::pair<int,int> > thispp,otherpp;
+ std::vector<int> factors;
+ ComputeZonesOfTwoRelativeToOneDiffLev(ghostLev,this,other,thispp,otherpp,factors);
+ return IsInMyNeighborhood(ghostLev>0?1:0,thispp,otherpp);//1 not ghostLev ! It is not a bug ( I hope :) ) ! Because as \a this is a refinement of \a other ghostLev is supposed to be <= factors
+}
+
+std::vector<int> MEDCouplingCartesianAMRPatch::computeCellGridSt() const
+{
+ const MEDCouplingCartesianAMRMeshGen *m(getMesh());
+ if(!m)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::computeCellGridSt : no mesh held by this !");
+ const MEDCouplingCartesianAMRMeshGen *father(m->getFather());
+ if(!father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::computeCellGridSt : no father help by underlying mesh !");
+ const std::vector< std::pair<int,int> >& bltr(getBLTRRange());
+ const std::vector<int>& factors(father->getFactors());
+ std::vector<int> ret(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(bltr));
+ std::transform(ret.begin(),ret.end(),factors.begin(),ret.begin(),std::multiplies<int>());
+ return ret;
+}
+
+bool MEDCouplingCartesianAMRPatch::IsInMyNeighborhood(int ghostLev, const std::vector< std::pair<int,int> >& p1, const std::vector< std::pair<int,int> >& p2)
+{
+ std::size_t thispsize(p1.size());
+ if(thispsize!=p2.size())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhood : the dimensions must be the same !");
for(std::size_t i=0;i<thispsize;i++)
{
- const std::pair<int,int>& thispp(thisp[i]);
- const std::pair<int,int>& otherpp(otherp[i]);
+ const std::pair<int,int>& thispp(p1[i]);
+ const std::pair<int,int>& otherpp(p2[i]);
if(thispp.second<thispp.first)
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::isInMyNeighborhood : this patch is invalid !");
if(otherpp.second<otherpp.first)
return true;
}
+/*!
+ * \sa FindNeighborsOfSubPatchesOf
+ */
+std::vector< std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > > MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOfSameLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2)
+{
+ if(!p1 || !p2)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOfSameLev : the input pointers must be not NULL !");
+ std::vector< std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > > ret;
+ std::vector< const MEDCouplingCartesianAMRPatch *> p1Work(p1->getMesh()->getPatches()),p2Work(p2->getMesh()->getPatches());
+ while(!p1Work.empty())
+ {
+ std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > retTmp;
+ std::vector<const MEDCouplingCartesianAMRPatch *> p1Work2,p2Work2;
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it1=p1Work.begin();it1!=p1Work.end();it1++)
+ {
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it2=p2Work.begin();it2!=p2Work.end();it2++)
+ {
+ if((*it1)->isInMyNeighborhoodExt(*it2,ghostLev>0?1:0))//1 not ghostLev ! It is not a bug ( I hope :) ) ! Because as \a this is a refinement of \a other ghostLev is supposed to be <= factors
+ retTmp.push_back(std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *>(*it1,*it2));
+ }
+ std::vector<const MEDCouplingCartesianAMRPatch *> tmp1((*it1)->getMesh()->getPatches());
+ p1Work2.insert(p1Work2.end(),tmp1.begin(),tmp1.end());
+ }
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it2=p2Work.begin();it2!=p2Work.end();it2++)
+ {
+ std::vector<const MEDCouplingCartesianAMRPatch *> tmp2((*it2)->getMesh()->getPatches());
+ p2Work2.insert(p2Work2.end(),tmp2.begin(),tmp2.end());
+ }
+ ret.push_back(retTmp);
+ p1Work=p1Work2;
+ p2Work=p2Work2;
+ }
+ return ret;
+}
+
+/*!
+ * This method returns all pair of patches (pa,pb) so that pb is in the neighborhood of pa (size of neighborhood is \a ghostLev).
+ * pa is a refinement (a child) of \b p1 and pb is equal to \a p2. So the returned pair do not have the same level as it is the case for
+ * FindNeighborsOfSubPatchesOfSameLev.
+ *
+ * \sa FindNeighborsOfSubPatchesOfSameLev
+ */
+void MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOf(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, std::vector< std::pair<const MEDCouplingCartesianAMRPatch *, const MEDCouplingCartesianAMRPatch *> >& ret)
+{
+ if(!p1 || !p2)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindNeighborsOfSubPatchesOf : the input pointers must be not NULL !");
+ std::vector< const MEDCouplingCartesianAMRPatch *> p1Work(p1->getMesh()->getPatches());
+ while(!p1Work.empty())
+ {
+ std::vector<const MEDCouplingCartesianAMRPatch *> p1Work2;
+ for(std::vector<const MEDCouplingCartesianAMRPatch *>::const_iterator it0=p1Work.begin();it0!=p1Work.end();it0++)
+ {
+ if((*it0)->isInMyNeighborhoodDiffLev(p2,ghostLev))
+ ret.push_back(std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *>(*it0,p2));
+ std::vector<const MEDCouplingCartesianAMRPatch *> tmp2((*it0)->getMesh()->getPatches());
+ p1Work2.insert(p1Work2.end(),tmp2.begin(),tmp2.end());
+ }
+ p1Work=p1Work2;
+ }
+}
+
+/*!
+ * \a p1 and \a p2 are expected to be neighbors (inside the \a ghostLev zone). This method updates \a dataOnP1 only in the ghost part using a part of \a dataOnP2.
+ *
+ * \saUpdateNeighborsOfOneWithTwoExt
+ */
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(int ghostLev, const std::vector<int>& factors, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{
+ const std::vector< std::pair<int,int> >& p1BLTR(p1->getBLTRRange());
+ const std::vector< std::pair<int,int> >& p2BLTR(p2->getBLTRRange());
+ UpdateNeighborsOfOneWithTwoInternal(ghostLev,factors,p1BLTR,p2BLTR,dataOnP1,dataOnP2);
+}
+
+/*!
+ * Idem than UpdateNeighborsOfOneWithTwo, except that here \a p1 and \a p2 are not sharing the same direct father.
+ *
+ * \sa UpdateNeighborsOfOneWithTwo
+ */
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoExt(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{
+ const std::vector< std::pair<int,int> >& p1BLTR(p1->getBLTRRange());//p1BLTR=[(10,12),(5,8)]
+ std::vector< std::pair<int,int> > p2BLTR(p2->getBLTRRange());//p2BLTR=[(0,1),(0,5)]
+ int lev(0);
+ const MEDCouplingCartesianAMRMeshGen *ca(FindCommonAncestor(p1,p2,lev));
+ std::vector<int> offset(ComputeOffsetFromTwoToOne(ca,lev,p1,p2));//[12,4]
+ p2BLTR=MEDCouplingStructuredMesh::TranslateCompactFrmt(p2BLTR,offset);//p2BLTR=[(12,13),(4,9)]
+ UpdateNeighborsOfOneWithTwoInternal(ghostLev,p1->getMesh()->getFather()->getFactors(),p1BLTR,p2BLTR,dataOnP1,dataOnP2);
+}
+
+/*!
+ * \a p1 is expected to be more refined than \a p2. \a p1 and \a p2 have to share a common ancestor. Compared to UpdateNeighborsOfOneWithTwoExt here \a p1 and \a p2 are \b not at the same level !
+ */
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoMixedLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2, bool isConservative)
+{
+ std::vector< std::pair<int,int> > p1pp,p2pp;
+ std::vector<int> factors;
+ ComputeZonesOfTwoRelativeToOneDiffLev(ghostLev,p1,p2,p1pp,p2pp,factors);
+ //
+ std::vector<int> dimsP2NotRefined(p2->computeCellGridSt());
+ std::vector<int> dimsP2Refined(dimsP2NotRefined);
+ std::transform(dimsP2NotRefined.begin(),dimsP2NotRefined.end(),factors.begin(),dimsP2Refined.begin(),std::multiplies<int>());
+ std::vector< std::pair<int,int> > p2RefinedAbs(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(dimsP2NotRefined));
+ std::vector<int> dimsP2RefinedGhost(dimsP2Refined.size());
+ std::transform(dimsP2Refined.begin(),dimsP2Refined.end(),dimsP2RefinedGhost.begin(),std::bind2nd(std::plus<int>(),2*ghostLev));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> fineP2(DataArrayDouble::New()); fineP2->alloc(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(dimsP2RefinedGhost),dataOnP2->getNumberOfComponents());
+ MEDCouplingIMesh::SpreadCoarseToFineGhost(dataOnP2,dimsP2NotRefined,fineP2,p2RefinedAbs,factors,ghostLev);
+ if(isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(factors));
+ std::transform(fineP2->begin(),fineP2->end(),fineP2->getPointer(),std::bind2nd(std::multiplies<double>(),1./((double)fact)));
+ }
+ //
+ UpdateNeighborsOfOneWithTwoInternal(ghostLev,p1->getMesh()->getFather()->getFactors(),p1pp,p2pp,dataOnP1,fineP2);
+}
+
+/*!
+ * \a p1 is expected to be more refined than \a p2. \a p1 and \a p2 have to share a common ancestor. Compared to UpdateNeighborsOfOneWithTwoExt here \a p1 and \a p2 are \b not at the same level !
+ * This method has 3 outputs. 2 two first are the resp the position of \a p1 and \a p2 relative to \a p1. And \a factToApplyOn2 is the coeff of refinement to be applied on \a p2 to be virtualy
+ * on the same level as \a p1.
+ */
+void MEDCouplingCartesianAMRPatch::ComputeZonesOfTwoRelativeToOneDiffLev(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, std::vector< std::pair<int,int> >& p1Zone, std::vector< std::pair<int,int> >& p2Zone, std::vector<int>& factToApplyOn2)
+{
+ std::vector<const MEDCouplingCartesianAMRMeshGen *> ancestorsOfThis;
+ const MEDCouplingCartesianAMRMeshGen *work(p1->getMesh()),*work2(0);
+ ancestorsOfThis.push_back(work);
+ while(work)
+ {
+ work=work->getFather();
+ if(work)
+ ancestorsOfThis.push_back(work);
+ }
+ //
+ work=p2->getMesh();
+ bool found(false);
+ std::size_t levThis(0),levOther(0);
+ while(work && !found)
+ {
+ work2=work;
+ work=work->getFather();
+ if(work)
+ {
+ levOther++;
+ std::vector<const MEDCouplingCartesianAMRMeshGen *>::iterator it(std::find(ancestorsOfThis.begin(),ancestorsOfThis.end(),work));
+ if(it!=ancestorsOfThis.end())
+ {
+ levThis=std::distance(ancestorsOfThis.begin(),it);
+ found=true;
+ }
+ }
+ }
+ if(!found)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeZonesOfTwoRelativeToOneDiffLev : no common ancestor found !");
+ if(levThis<=levOther)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeZonesOfTwoRelativeToOneDiffLev : this method is not called correctly !");
+ //
+ const MEDCouplingCartesianAMRMeshGen *comAncestor(ancestorsOfThis[levThis]);
+ int idThis(comAncestor->getPatchIdFromChildMesh(ancestorsOfThis[levThis-1])),idOther(comAncestor->getPatchIdFromChildMesh(work2));
+ const MEDCouplingCartesianAMRPatch *thisp(comAncestor->getPatch(idThis)),*otherp(comAncestor->getPatch(idOther));
+ std::vector<int> offset(ComputeOffsetFromTwoToOne(comAncestor,levOther,thisp,otherp));
+ p1Zone=thisp->getBLTRRange(); p2Zone=MEDCouplingStructuredMesh::TranslateCompactFrmt(otherp->getBLTRRange(),offset);
+ factToApplyOn2.resize(p1Zone.size()); std::fill(factToApplyOn2.begin(),factToApplyOn2.end(),1);
+ //
+ std::size_t nbOfTurn(levThis-levOther);
+ for(std::size_t i=0;i<nbOfTurn;i++)
+ {
+ std::vector< std::pair<int,int> > tmp0;
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(p1Zone,p2Zone,tmp0,false);
+ p2Zone=tmp0;
+ const MEDCouplingCartesianAMRMeshGen *curAncestor(ancestorsOfThis[levThis-i]);
+ ApplyFactorsOnCompactFrmt(p2Zone,curAncestor->getFactors());
+ curAncestor=ancestorsOfThis[levThis-1-i];
+ const std::vector<int>& factors(curAncestor->getFactors());
+ std::transform(factToApplyOn2.begin(),factToApplyOn2.end(),factors.begin(),factToApplyOn2.begin(),std::multiplies<int>());
+ int tmpId(curAncestor->getPatchIdFromChildMesh(ancestorsOfThis[levThis-2-i]));
+ p1Zone=curAncestor->getPatch(tmpId)->getBLTRRange();
+ }
+}
+
std::size_t MEDCouplingCartesianAMRPatch::getHeapMemorySizeWithoutChildren() const
{
std::size_t ret(sizeof(MEDCouplingCartesianAMRPatch));
return ret;
}
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRPatch::FindCommonAncestor(const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2, int& lev)
+{
+ const MEDCouplingCartesianAMRMeshGen *f1(p1->_mesh),*f2(p2->_mesh);
+ lev=0;
+ while(f1!=f2 || f1==0 || f2==0)
+ {
+ f1=f1->getFather(); f2=f2->getFather();
+ if(f1->getFactors()!=f2->getFactors())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindCommonAncestor : factors differ !");
+ lev++;
+ }
+ if(f1!=f2)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::FindCommonAncestor : no common ancestor between p1 and p2 !");
+ return f1;
+}
+
+std::vector<int> MEDCouplingCartesianAMRPatch::ComputeOffsetFromTwoToOne(const MEDCouplingCartesianAMRMeshGen *comAncestor, int lev, const MEDCouplingCartesianAMRPatch *p1, const MEDCouplingCartesianAMRPatch *p2)
+{
+ if(lev<=0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeOffsetFromTwoToOne : this method is useful only for lev > 0 !");
+ int zeLev(lev-1);
+ int dim(p1->getMesh()->getSpaceDimension());
+ if(p2->getMesh()->getSpaceDimension()!=dim)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ComputeOffsetFromTwoToOne : dimension must be the same !");
+ std::vector< int > ret(dim,0);
+ for(int i=0;i<zeLev;i++)
+ {
+ const MEDCouplingCartesianAMRMeshGen *f1(p1->_mesh),*f2(p2->_mesh);
+ const MEDCouplingCartesianAMRPatch *p1h(0),*p2h(0);
+ for(int j=0;j<lev-i;j++)
+ {
+ const MEDCouplingCartesianAMRMeshGen *f1tmp(f1->getFather()),*f2tmp(f2->getFather());
+ int pid1(f1tmp->getPatchIdFromChildMesh(f1)),pid2(f2tmp->getPatchIdFromChildMesh(f2));
+ p1h=f1tmp->getPatch(pid1); p2h=f2tmp->getPatch(pid2);
+ f1=f1tmp; f2=f2tmp;
+ }
+ std::vector< std::pair<int,int> > p2c(p2h->getBLTRRange());
+ for(int k=0;k<dim;k++)
+ {
+ p2c[k].first+=ret[k];
+ p2c[k].second+=ret[k];
+ }
+ for(int k=0;k<dim;k++)
+ {
+ ret[k]=p2c[k].first-p1h->getBLTRRange()[k].first;
+ ret[k]*=f1->getFactors()[k];
+ }
+ }
+ return ret;
+}
+
+void MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoInternal(int ghostLev, const std::vector<int>& factors, const std::vector< std::pair<int,int> >&p1 ,const std::vector< std::pair<int,int> >&p2, DataArrayDouble *dataOnP1, const DataArrayDouble *dataOnP2)
+{//p1=[(1,4),(2,4)] p2=[(4,5),(3,4)]
+ int dim((int)factors.size());
+ std::vector<int> dimsCoarse(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(p1));//[3,2]
+ std::transform(dimsCoarse.begin(),dimsCoarse.end(),factors.begin(),dimsCoarse.begin(),std::multiplies<int>());//[12,8]
+ std::transform(dimsCoarse.begin(),dimsCoarse.end(),dimsCoarse.begin(),std::bind2nd(std::plus<int>(),2*ghostLev));//[14,10]
+ std::vector< std::pair<int,int> > rangeCoarse(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(dimsCoarse));//[(0,14),(0,10)]
+ std::vector<int> fakeFactors(dim,1);
+ //
+ std::vector< std::pair<int,int> > tmp0,tmp1,tmp2;
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(p1,p2,tmp0,false);//tmp0=[(3,4),(1,2)]
+ ApplyFactorsOnCompactFrmt(tmp0,factors);//tmp0=[(12,16),(4,8)]
+ MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(tmp0,ghostLev);//tmp0=[(13,17),(5,9)]
+ std::vector< std::pair<int,int> > interstRange(MEDCouplingStructuredMesh::IntersectRanges(tmp0,rangeCoarse));//interstRange=[(13,14),(5,9)]
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(p2,p1,tmp1,false);//tmp1=[(-3,0),(-1,1)]
+ ApplyFactorsOnCompactFrmt(tmp1,factors);//tmp1=[(-12,-4),(-4,0)]
+ MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt(tmp1,interstRange,tmp2,false);//tmp2=[(1,2),(1,5)]
+ //
+ std::vector< std::pair<int,int> > dimsFine(p2);
+ ApplyFactorsOnCompactFrmt(dimsFine,factors);
+ ApplyAllGhostOnCompactFrmt(dimsFine,ghostLev);
+ //
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ghostVals(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(dimsFine),dataOnP2,tmp2));
+ MEDCouplingIMesh::CondenseFineToCoarse(dimsCoarse,ghostVals,interstRange,fakeFactors,dataOnP1);
+}
+
+MEDCouplingCartesianAMRPatch::MEDCouplingCartesianAMRPatch(const MEDCouplingCartesianAMRPatch& other, MEDCouplingCartesianAMRMeshGen *father):MEDCouplingCartesianAMRPatchGen(other,father),_bl_tr(other._bl_tr)
+{
+}
+
+/*!
+ * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in refined reference.
+ * \param [in] factors - the factors per axis.
+ */
+void MEDCouplingCartesianAMRPatch::ApplyFactorsOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, const std::vector<int>& factors)
+{
+ std::size_t sz(factors.size());
+ if(sz!=partBeforeFact.size())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ApplyFactorsOnCompactFrmt : size of input vectors must be the same !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ partBeforeFact[i].first*=factors[i];
+ partBeforeFact[i].second*=factors[i];
+ }
+}
+
+/*!
+ * This method is different than ApplyGhostOnCompactFrmt. The \a partBeforeFact parameter is enlarger contrary to ApplyGhostOnCompactFrmt.
+ *
+ * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
+ * \param [in] ghostSize - the ghost size of zone for all axis.
+ */
+void MEDCouplingCartesianAMRPatch::ApplyAllGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
+{
+ if(ghostSize<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRPatch::ApplyAllGhostOnCompactFrmt : ghost size must be >= 0 !");
+ std::size_t sz(partBeforeFact.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ partBeforeFact[i].first-=ghostSize;
+ partBeforeFact[i].second+=ghostSize;
+ }
+}
+
MEDCouplingCartesianAMRPatchGF::MEDCouplingCartesianAMRPatchGF(MEDCouplingCartesianAMRMesh *mesh):MEDCouplingCartesianAMRPatchGen(mesh)
{
}
+MEDCouplingCartesianAMRPatchGF *MEDCouplingCartesianAMRPatchGF::deepCpy(MEDCouplingCartesianAMRMeshGen *father) const
+{
+ return new MEDCouplingCartesianAMRPatchGF(*this,father);
+}
+
std::size_t MEDCouplingCartesianAMRPatchGF::getHeapMemorySizeWithoutChildren() const
{
return sizeof(MEDCouplingCartesianAMRPatchGF);
}
+MEDCouplingCartesianAMRPatchGF::MEDCouplingCartesianAMRPatchGF(const MEDCouplingCartesianAMRPatchGF& other, MEDCouplingCartesianAMRMeshGen *father):MEDCouplingCartesianAMRPatchGen(other,father)
+{
+}
+
/// @endcond
int MEDCouplingCartesianAMRMeshGen::getSpaceDimension() const
if(!_patches.empty())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::setFactors : modification of factors is not allowed when presence of patches !");
_factors=newFactors;
+ declareAsNew();
}
int MEDCouplingCartesianAMRMeshGen::getMaxNumberOfLevelsRelativeToThis() const
return ret;
}
+/*!
+ * This method returns the number of cells of \a this with the help of the MEDCouplingIMesh instance representing \a this.
+ * The patches in \a this are ignored here.
+ * \sa getNumberOfCellsAtCurrentLevelGhost, getNumberOfCellsRecursiveWithOverlap
+ */
int MEDCouplingCartesianAMRMeshGen::getNumberOfCellsAtCurrentLevel() const
{
return _mesh->getNumberOfCells();
}
+/*!
+ * This method returns the number of cells of \a this with the help of the MEDCouplingIMesh instance representing \a this enlarged by \a ghostLev size
+ * to take into account of the ghost cells for future computation.
+ * The patches in \a this are ignored here.
+ *
+ * \sa getNumberOfCellsAtCurrentLevel
+ */
+int MEDCouplingCartesianAMRMeshGen::getNumberOfCellsAtCurrentLevelGhost(int ghostLev) const
+{
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingIMesh> tmp(_mesh->buildWithGhost(ghostLev));
+ return tmp->getNumberOfCells();
+}
+
+/*!
+ * This method returns the number of cells including the current level but \b also \b including recursively all cells of other levels
+ * starting from this. The set of cells which size is returned here are generally overlapping each other.
+ */
int MEDCouplingCartesianAMRMeshGen::getNumberOfCellsRecursiveWithOverlap() const
{
int ret(_mesh->getNumberOfCells());
return ret;
}
+/*!
+ * This method returns the max number of cells covering all the space without overlapping.
+ * It returns the number of cells of the mesh with the highest resolution.
+ * The returned value is equal to the number of cells of mesh returned by buildUnstructured.
+ *
+ * \sa buildUnstructured
+ */
int MEDCouplingCartesianAMRMeshGen::getNumberOfCellsRecursiveWithoutOverlap() const
{
int ret(_mesh->getNumberOfCells());
return ret;
}
-const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshGen::getFather() const
+/*!
+ * This method returns a vector of size equal to getAbsoluteLevelRelativeTo. It allows to find position an absolute position of \a this
+ * relative to \a ref (that is typically the god father).
+ *
+ * \sa getPatchAtPosition
+ */
+std::vector<int> MEDCouplingCartesianAMRMeshGen::getPositionRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const
{
- return _father;
+ if(!ref)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPositionRelativeTo : input pointer is NULL !");
+ std::vector<int> ret;
+ getPositionRelativeToInternal(ref,ret);
+ std::reverse(ret.begin(),ret.end());
+ return ret;
}
-const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshGen::getGodFather() const
+/*!
+ * \sa getPositionRelativeTo, getMeshAtPosition
+ */
+const MEDCouplingCartesianAMRPatch *MEDCouplingCartesianAMRMeshGen::getPatchAtPosition(const std::vector<int>& pos) const
{
- if(_father==0)
- return this;
- else
- return _father->getGodFather();
+ std::size_t sz(pos.size());
+ if(sz==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPatchAtPosition : empty input -> no patch by definition !");
+ int patchId(pos[0]);
+ const MEDCouplingCartesianAMRPatch *elt(getPatch(patchId));
+ if(sz==1)
+ return elt;
+ if(!elt || !elt->getMesh())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPatchAtPosition : NULL element found during walk !");
+ std::vector<int> pos2(pos.begin()+1,pos.end());
+ return elt->getMesh()->getPatchAtPosition(pos2);
}
-/*!
- * This method returns the level of \a this. 0 for god father. -1 for children of god father ...
- */
-int MEDCouplingCartesianAMRMeshGen::getAbsoluteLevel() const
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshGen::getMeshAtPosition(const std::vector<int>& pos) const
{
- if(_father==0)
- return 0;
- else
- return _father->getAbsoluteLevel()-1;
+ std::size_t sz(pos.size());
+ if(sz==0)
+ return this;
+ int patchId(pos[0]);
+ const MEDCouplingCartesianAMRPatch *elt(getPatch(patchId));
+ if(sz==1)
+ {
+ if(!elt)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getMeshAtPosition : NULL patch !");
+ return elt->getMesh();
+ }
+ if(!elt || !elt->getMesh())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPatchAtPosition : NULL element found during walk !");
+ std::vector<int> pos2(pos.begin()+1,pos.end());
+ return elt->getMesh()->getMeshAtPosition(pos2);
}
/*!
{
if(absoluteLev<0)
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::retrieveGridsAt : absolute level must be >=0 !");
- if(_father)
- return getGodFather()->retrieveGridsAt(absoluteLev);
- //
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatchGen> > rets;
- retrieveGridsAtInternal(absoluteLev,rets);
- std::vector< MEDCouplingCartesianAMRPatchGen * > ret(rets.size());
- for(std::size_t i=0;i<rets.size();i++)
- {
- ret[i]=rets[i].retn();
- }
- return ret;
-}
-
-void MEDCouplingCartesianAMRMeshGen::detachFromFather()
-{
- _father=0;
+ return getGodFather()->retrieveGridsAt(absoluteLev);
}
/*!
MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRMeshSub> zeMesh(new MEDCouplingCartesianAMRMeshSub(this,mesh));
MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> elt(new MEDCouplingCartesianAMRPatch(zeMesh,bottomLeftTopRight));
_patches.push_back(elt);
+ declareAsNew();
}
/// @cond INTERNAL
/// @endcond
+void MEDCouplingCartesianAMRMeshGen::removeAllPatches()
+{
+ _patches.clear();
+ declareAsNew();
+}
+
+void MEDCouplingCartesianAMRMeshGen::removePatch(int patchId)
+{
+ checkPatchId(patchId);
+ int sz((int)_patches.size()),j(0);
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> > patches(sz-1);
+ for(int i=0;i<sz;i++)
+ if(i!=patchId)
+ patches[j++]=_patches[i];
+ (const_cast<MEDCouplingCartesianAMRMeshGen *>(_patches[patchId]->getMesh()))->detachFromFather();
+ _patches=patches;
+ declareAsNew();
+}
+
+int MEDCouplingCartesianAMRMeshGen::getNumberOfPatches() const
+{
+ return (int)_patches.size();
+}
+
/*!
* This method creates patches in \a this (by destroying the patches if any). This method uses \a criterion array as a field on cells on this level.
+ * This method only create patches at level 0 relative to \a this.
*/
void MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const std::vector<bool>& criterion, const std::vector<int>& factors)
{
int nbCells(getNumberOfCellsAtCurrentLevel());
if(nbCells!=(int)criterion.size())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterion : the number of tuples of criterion array must be equal to the number of cells at the current level !");
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion : the number of tuples of criterion array must be equal to the number of cells at the current level !");
_patches.clear();
std::vector<int> cgs(_mesh->getCellGridStructure());
std::vector< MEDCouplingAutoRefCountObjectPtr<InternalPatch> > listOfPatches,listOfPatchesOK;
}
for(std::vector< MEDCouplingAutoRefCountObjectPtr<InternalPatch> >::const_iterator it=listOfPatchesOK.begin();it!=listOfPatchesOK.end();it++)
addPatch((*it)->getConstPart(),factors);
+ declareAsNew();
}
/*!
* This method creates patches in \a this (by destroying the patches if any). This method uses \a criterion array as a field on cells on this level.
+ * This method only create patches at level 0 relative to \a this.
*/
void MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const DataArrayByte *criterion, const std::vector<int>& factors)
{
if(!criterion || !criterion->isAllocated())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterion : the criterion DataArrayByte instance must be allocated and not NULL !");
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion : the criterion DataArrayByte instance must be allocated and not NULL !");
std::vector<bool> crit(criterion->toVectorOfBool());//check that criterion has one component.
createPatchesFromCriterion(bso,crit,factors);
+ declareAsNew();
}
-void MEDCouplingCartesianAMRMeshGen::removeAllPatches()
+void MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion(const INTERP_KERNEL::BoxSplittingOptions& bso, const DataArrayDouble *criterion, const std::vector<int>& factors, double eps)
{
- _patches.clear();
- declareAsNew();
+ if(!criterion)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::createPatchesFromCriterion : null criterion pointer !");
+ std::vector<bool> inp(criterion->toVectorOfBool(eps));
+ createPatchesFromCriterion(bso,inp,factors);
}
-void MEDCouplingCartesianAMRMeshGen::removePatch(int patchId)
+int MEDCouplingCartesianAMRMeshGen::getPatchIdFromChildMesh(const MEDCouplingCartesianAMRMeshGen *mesh) const
{
- checkPatchId(patchId);
- int sz((int)_patches.size()),j(0);
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> > patches(sz-1);
- for(int i=0;i<sz;i++)
- if(i!=patchId)
- patches[j++]=_patches[i];
- (const_cast<MEDCouplingCartesianAMRMeshGen *>(_patches[patchId]->getMesh()))->detachFromFather();
- _patches=patches;
- declareAsNew();
+ int ret(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> >::const_iterator it=_patches.begin();it!=_patches.end();it++,ret++)
+ {
+ if((*it)->getMesh()==mesh)
+ return ret;
+ }
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::getPatchIdFromChildMesh : no such a mesh in my direct progeny !");
}
-int MEDCouplingCartesianAMRMeshGen::getNumberOfPatches() const
+std::vector< const MEDCouplingCartesianAMRPatch *> MEDCouplingCartesianAMRMeshGen::getPatches() const
{
- return (int)_patches.size();
+ std::size_t sz(_patches.size());
+ std::vector< const MEDCouplingCartesianAMRPatch *> ret(sz);
+ for(std::size_t i=0;i<sz;i++)
+ ret[i]=_patches[i];
+ return ret;
}
const MEDCouplingCartesianAMRPatch *MEDCouplingCartesianAMRMeshGen::getPatch(int patchId) const
*/
bool MEDCouplingCartesianAMRMeshGen::isPatchInNeighborhoodOf(int patchId1, int patchId2, int ghostLev) const
{
- if(ghostLev<0)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::isPatchInNeighborhoodOf : the ghost size must be >=0 !");
const MEDCouplingCartesianAMRPatch *p1(getPatch(patchId1)),*p2(getPatch(patchId2));
- if(_factors.empty())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::isPatchInNeighborhoodOf : no factors defined !");
- int ghostLevInPatchRef;
- if(ghostLev==0)
- ghostLevInPatchRef=0;
- else
- {
- ghostLevInPatchRef=(ghostLev-1)/_factors[0]+1;
- for(std::size_t i=0;i<_factors.size();i++)
- ghostLevInPatchRef=std::max(ghostLevInPatchRef,(ghostLev-1)/_factors[i]+1);
- }
- return p1->isInMyNeighborhood(p2,ghostLevInPatchRef);
+ return p1->isInMyNeighborhood(p2,ghostLev);
}
/*!
*
* \sa createCellFieldOnPatch, fillCellFieldComingFromPatch
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatch(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatch(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, bool isConservative) const
{
if(!cellFieldOnThis || !cellFieldOnThis->isAllocated())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createCellFieldOnPatch : the input cell field array is NULL or not allocated !");
const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
MEDCouplingIMesh::SpreadCoarseToFine(cellFieldOnThis,_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors());
+ if(isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(getFactors()));
+ std::transform(cellFieldOnPatch->begin(),cellFieldOnPatch->end(),cellFieldOnPatch->getPointer(),std::bind2nd(std::multiplies<double>(),1./((double)fact)));
+ }
}
/*!
*
* \sa fillCellFieldOnPatch, fillCellFieldOnPatchGhostAdv
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhost(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, int ghostLev) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhost(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, int ghostLev, bool isConservative) const
{
if(!cellFieldOnThis || !cellFieldOnThis->isAllocated())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createCellFieldOnPatchGhost : the input cell field array is NULL or not allocated !");
const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
MEDCouplingIMesh::SpreadCoarseToFineGhost(cellFieldOnThis,_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),ghostLev);
+ if(isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(getFactors()));
+ std::transform(cellFieldOnPatch->begin(),cellFieldOnPatch->end(),cellFieldOnPatch->getPointer(),std::bind2nd(std::multiplies<double>(),1./((double)fact)));
+ }
+}
+
+/*!
+ * This method is equivalent to fillCellFieldOnPatchGhost except that here \b ONLY \b the \b ghost \b zone will be updated
+ * in \a cellFieldOnPatch.
+ *
+ * \param [in] patchId - The id of the patch \a cellFieldOnThis has to be put on.
+ * \param [in] cellFieldOnThis - The array of the cell field on \c this->getImageMesh() to be projected to patch having id \a patchId.
+ * \param [in,out] cellFieldOnPatch - The array of the cell field on the requested patch to be filled \b only \b in \b the \b ghost \b zone.
+ * \param [in] ghostLev - The size of the ghost zone (must be >=0 !)
+ */
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchOnlyOnGhostZone(int patchId, const DataArrayDouble *cellFieldOnThis, DataArrayDouble *cellFieldOnPatch, int ghostLev) const
+{
+ if(!cellFieldOnThis || !cellFieldOnThis->isAllocated())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::fillCellFieldOnPatchOnlyOnGhostZone : the input cell field array is NULL or not allocated !");
+ const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
+ MEDCouplingIMesh::SpreadCoarseToFineGhostZone(cellFieldOnThis,_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),ghostLev);
}
/*!
* \param [in,out] cellFieldOnPatch - The array of the cell field on the requested patch to be filled.
* \param [in] ghostLev - The size of the ghost zone (must be >=0 !)
* \param [in] arrsOnPatches - \b WARNING arrsOnPatches[patchId] is \b NOT \b const. All others are const.
+ *
+ * \sa fillCellFieldOnPatchOnlyGhostAdv
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhostAdv(int patchId, const DataArrayDouble *cellFieldOnThis, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchGhostAdv(int patchId, const DataArrayDouble *cellFieldOnThis, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches, bool isConservative) const
{
- int nbp(getNumberOfPatches()),dim(getSpaceDimension());
+ int nbp(getNumberOfPatches());
if(nbp!=(int)arrsOnPatches.size())
{
std::ostringstream oss; oss << "MEDCouplingCartesianAMRMesh::fillCellFieldOnPatchGhostAdv : there are " << nbp << " patches in this and " << arrsOnPatches.size() << " arrays in the last parameter !";
}
DataArrayDouble *theFieldToFill(const_cast<DataArrayDouble *>(arrsOnPatches[patchId]));
// first, do as usual
- fillCellFieldOnPatchGhost(patchId,cellFieldOnThis,theFieldToFill,ghostLev);
- // all reference patch stuff
+ fillCellFieldOnPatchGhost(patchId,cellFieldOnThis,theFieldToFill,ghostLev,isConservative);
+ fillCellFieldOnPatchOnlyGhostAdv(patchId,ghostLev,arrsOnPatches);
+}
+
+/*!
+ * This method updates the patch with id \a patchId considering the only the all the patches in \a this to fill ghost zone.
+ * So \b warning, the DataArrayDouble instance \a arrsOnPatches[patchId] is non const.
+ *
+ * \sa getPatchIdsInTheNeighborhoodOf
+ */
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchOnlyGhostAdv(int patchId, int ghostLev, const std::vector<const DataArrayDouble *>& arrsOnPatches) const
+{
+ int nbp(getNumberOfPatches());
+ if(nbp!=(int)arrsOnPatches.size())
+ {
+ std::ostringstream oss; oss << "MEDCouplingCartesianAMRMesh::fillCellFieldOnPatchOnlyGhostAdv : there are " << nbp << " patches in this and " << arrsOnPatches.size() << " arrays in the last parameter !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
const MEDCouplingCartesianAMRPatch *refP(getPatch(patchId));
- const std::vector< std::pair<int,int> >& refBLTR(refP->getBLTRRange());//[(1,4),(2,4)]
- std::vector<int> dimsCoarse(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(refBLTR));//[3,2]
- std::transform(dimsCoarse.begin(),dimsCoarse.end(),_factors.begin(),dimsCoarse.begin(),std::multiplies<int>());//[12,8]
- std::transform(dimsCoarse.begin(),dimsCoarse.end(),dimsCoarse.begin(),std::bind2nd(std::plus<int>(),2*ghostLev));//[14,10]
- std::vector< std::pair<int,int> > rangeCoarse(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(dimsCoarse));//[(0,14),(0,10)]
- std::vector<int> fakeFactors(dim,1);
- //
- for(int i=0;i<nbp;i++)
+ DataArrayDouble *theFieldToFill(const_cast<DataArrayDouble *>(arrsOnPatches[patchId]));
+ std::vector<int> ids(getPatchIdsInTheNeighborhoodOf(patchId,ghostLev));
+ for(std::vector<int>::const_iterator it=ids.begin();it!=ids.end();it++)
{
- if(i!=patchId)
- if(isPatchInNeighborhoodOf(i,patchId,ghostLev))
- {
- const MEDCouplingCartesianAMRPatch *otherP(getPatch(i));
- const std::vector< std::pair<int,int> >& otherBLTR(otherP->getBLTRRange());//[(4,5),(3,4)]
- std::vector< std::pair<int,int> > tmp0,tmp1,tmp2;
- MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(refBLTR,otherBLTR,tmp0,false);//tmp0=[(3,4),(1,2)]
- ApplyFactorsOnCompactFrmt(tmp0,_factors);//tmp0=[(12,16),(4,8)]
- ApplyGhostOnCompactFrmt(tmp0,ghostLev);//tmp0=[(13,17),(5,9)]
- std::vector< std::pair<int,int> > interstRange(MEDCouplingStructuredMesh::IntersectRanges(tmp0,rangeCoarse));//interstRange=[(13,14),(5,9)]
- MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(otherBLTR,refBLTR,tmp1,false);//tmp1=[(-3,0),(-1,1)]
- ApplyFactorsOnCompactFrmt(tmp1,_factors);//tmp1=[(-12,-4),(-4,0)]
- MEDCouplingStructuredMesh::ChangeReferenceToGlobalOfCompactFrmt(tmp1,interstRange,tmp2,false);//tmp2=[(1,2),(1,5)]
- //
- std::vector< std::pair<int,int> > dimsFine(otherBLTR);
- ApplyFactorsOnCompactFrmt(dimsFine,_factors);
- ApplyAllGhostOnCompactFrmt(dimsFine,ghostLev);
- //
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ghostVals(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(MEDCouplingStructuredMesh::GetDimensionsFromCompactFrmt(dimsFine),arrsOnPatches[i],tmp2));
- MEDCouplingIMesh::CondenseFineToCoarse(dimsCoarse,ghostVals,interstRange,fakeFactors,theFieldToFill);
- }
+ const MEDCouplingCartesianAMRPatch *otherP(getPatch(*it));
+ MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(ghostLev,_factors,refP,otherP,theFieldToFill,arrsOnPatches[*it]);
}
}
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldOnPatchOnlyOnGhostZoneWith(int ghostLev, const MEDCouplingCartesianAMRPatch *patchToBeModified, const MEDCouplingCartesianAMRPatch *neighborPatch, DataArrayDouble *cellFieldOnPatch, const DataArrayDouble *cellFieldNeighbor) const
+{
+ MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwo(ghostLev,_factors,patchToBeModified,neighborPatch,cellFieldOnPatch,cellFieldNeighbor);
+}
+
/*!
* This method updates \a cellFieldOnThis part of values coming from the cell field \a cellFieldOnPatch lying on patch having id \a patchId.
*
* \param [in] patchId - The id of the patch \a cellFieldOnThis has to be put on.
* \param [in] cellFieldOnPatch - The array of the cell field on patch with id \a patchId.
* \param [in,out] cellFieldOnThis The array of the cell field on \a this to be updated only on the part concerning the patch with id \a patchId.
+ * \param [in] isConservative - true if the field needs to be conserved. false if maximum principle has to be applied.
*
* \throw if \a patchId is not in [ 0 , \c this->getNumberOfPatches() )
* \throw if \a cellFieldOnPatch is NULL or not allocated
* \sa createCellFieldOnPatch, MEDCouplingIMesh::CondenseFineToCoarse,fillCellFieldComingFromPatchGhost
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldComingFromPatch(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldComingFromPatch(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, bool isConservative) const
{
if(!cellFieldOnPatch || !cellFieldOnPatch->isAllocated())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::fillCellFieldComingFromPatch : the input cell field array is NULL or not allocated !");
const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
MEDCouplingIMesh::CondenseFineToCoarse(_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),cellFieldOnThis);
+ if(!isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(getFactors()));
+ MEDCouplingStructuredMesh::MultiplyPartOf(_mesh->getCellGridStructure(),patch->getBLTRRange(),1./((double)fact),cellFieldOnThis);
+ }
}
/*!
* \param [in] cellFieldOnPatch - The array of the cell field on patch with id \a patchId.
* \param [in,out] cellFieldOnThis The array of the cell field on \a this to be updated only on the part concerning the patch with id \a patchId.
* \param [in] ghostLev The size of ghost zone (must be >= 0 !)
+ * \param [in] isConservative - true if the field needs to be conserved. false if maximum principle has to be applied.
*
* \throw if \a patchId is not in [ 0 , \c this->getNumberOfPatches() )
* \throw if \a cellFieldOnPatch is NULL or not allocated
* \sa fillCellFieldComingFromPatch
*/
-void MEDCouplingCartesianAMRMeshGen::fillCellFieldComingFromPatchGhost(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, int ghostLev) const
+void MEDCouplingCartesianAMRMeshGen::fillCellFieldComingFromPatchGhost(int patchId, const DataArrayDouble *cellFieldOnPatch, DataArrayDouble *cellFieldOnThis, int ghostLev, bool isConservative) const
{
if(!cellFieldOnPatch || !cellFieldOnPatch->isAllocated())
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::fillCellFieldComingFromPatchGhost : the input cell field array is NULL or not allocated !");
const MEDCouplingCartesianAMRPatch *patch(getPatch(patchId));
MEDCouplingIMesh::CondenseFineToCoarseGhost(_mesh->getCellGridStructure(),cellFieldOnPatch,patch->getBLTRRange(),getFactors(),cellFieldOnThis,ghostLev);
+ if(!isConservative)
+ {
+ int fact(MEDCouplingStructuredMesh::DeduceNumberOfGivenStructure(getFactors()));
+ MEDCouplingStructuredMesh::MultiplyPartOfByGhost(_mesh->getCellGridStructure(),patch->getBLTRRange(),ghostLev,1./((double)fact),cellFieldOnThis);
+ }
}
/*!
return MEDCoupling1SGTUMesh::Merge1SGTUMeshes(patches);
}
+/*!
+ * This method works same as buildUnstructured except that arrays are given in input to build a field on cell in output.
+ * \return MEDCouplingFieldDouble * - a newly created instance the caller has reponsability to deal with.
+ * \sa buildUnstructured
+ */
+MEDCouplingFieldDouble *MEDCouplingCartesianAMRMeshGen::buildCellFieldOnRecurseWithoutOverlapWithoutGhost(int ghostSz, const std::vector<const DataArrayDouble *>& recurseArrs) const
+{
+ if(recurseArrs.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::buildCellFieldOnRecurseWithoutOverlapWithoutGhost : array is empty ! Should never happen !");
+ //
+ std::vector<bool> bs(_mesh->getNumberOfCells(),false);
+ std::vector<int> cgs(_mesh->getCellGridStructure());
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> > msSafe(_patches.size()+1);
+ std::size_t ii(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> >::const_iterator it=_patches.begin();it!=_patches.end();it++,ii++)
+ {
+ MEDCouplingStructuredMesh::SwitchOnIdsFrom(cgs,(*it)->getBLTRRange(),bs);
+ std::vector<const DataArrayDouble *> tmpArrs(extractSubTreeFromGlobalFlatten((*it)->getMesh(),recurseArrs));
+ msSafe[ii+1]=(*it)->getMesh()->buildCellFieldOnRecurseWithoutOverlapWithoutGhost(ghostSz,tmpArrs);
+ }
+ MEDCouplingAutoRefCountObjectPtr<DataArrayInt> eltsOff(DataArrayInt::BuildListOfSwitchedOff(bs));
+ //
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret(MEDCouplingFieldDouble::New(ON_CELLS));
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> arr2(extractGhostFrom(ghostSz,recurseArrs[0]));
+ arr2=arr2->selectByTupleIdSafe(eltsOff->begin(),eltsOff->end());
+ ret->setArray(arr2);
+ ret->setName(arr2->getName());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> part(_mesh->buildUnstructured());
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingMesh> mesh(part->buildPartOfMySelf(eltsOff->begin(),eltsOff->end(),false));
+ ret->setMesh(mesh);
+ msSafe[0]=ret;
+ //
+ std::vector< const MEDCouplingFieldDouble * > ms(msSafe.size());
+ for(std::size_t i=0;i<msSafe.size();i++)
+ ms[i]=msSafe[i];
+ //
+ return MEDCouplingFieldDouble::MergeFields(ms);
+}
+
+/*!
+ * This method extracts from \arr arr the part inside \a arr by cutting the \a ghostSz external part.
+ * \arr is expected to be an array having a number of tuples equal to \c getImageMesh()->buildWithGhost(ghostSz).
+ */
+DataArrayDouble *MEDCouplingCartesianAMRMeshGen::extractGhostFrom(int ghostSz, const DataArrayDouble *arr) const
+{
+ std::vector<int> st(_mesh->getCellGridStructure());
+ std::vector< std::pair<int,int> > p(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(st));
+ std::transform(st.begin(),st.end(),st.begin(),std::bind2nd(std::plus<int>(),2*ghostSz));
+ MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(p,ghostSz);
+ MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> ret(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(st,arr,p));
+ return ret.retn();
+}
+
+/*!
+ * This method returns all the patches in \a this not equal to \a patchId that are in neighborhood of patch with id \a patchId.
+ *
+ * \sa fillCellFieldOnPatchOnlyGhostAdv
+ */
+std::vector<int> MEDCouplingCartesianAMRMeshGen::getPatchIdsInTheNeighborhoodOf(int patchId, int ghostLev) const
+{
+ std::vector<int> ret;
+ int nbp(getNumberOfPatches());
+ //
+ for(int i=0;i<nbp;i++)
+ {
+ if(i!=patchId)
+ if(isPatchInNeighborhoodOf(i,patchId,ghostLev))
+ ret.push_back(i);
+ }
+ return ret;
+}
+
+/*!
+ * This method returns a dump python of \a this. It is useful for users of createPatchesFromCriterion method for debugging.
+ *
+ * \sa dumpPatchesOf, createPatchesFromCriterion, createPatchesFromCriterionML
+ */
+std::string MEDCouplingCartesianAMRMeshGen::buildPythonDumpOfThis() const
+{
+ std::ostringstream oss;
+ oss << "amr=MEDCouplingCartesianAMRMesh(\""<< getImageMesh()->getName() << "\"," << getSpaceDimension() << ",[";
+ std::vector<int> ngs(getImageMesh()->getNodeGridStructure());
+ std::vector<double> orig(getImageMesh()->getOrigin()),dxyz(getImageMesh()->getDXYZ());
+ std::copy(ngs.begin(),ngs.end(),std::ostream_iterator<int>(oss,","));
+ oss << "],[";
+ std::copy(orig.begin(),orig.end(),std::ostream_iterator<double>(oss,","));
+ oss << "],[";
+ std::copy(dxyz.begin(),dxyz.end(),std::ostream_iterator<double>(oss,","));
+ oss << "])\n";
+ dumpPatchesOf("amr",oss);
+ return oss.str();
+}
+
+MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(const MEDCouplingCartesianAMRMeshGen& other):RefCountObject(other),_mesh(other._mesh),_patches(other._patches),_factors(other._factors)
+{
+ const MEDCouplingIMesh *mesh(other._mesh);
+ if(mesh)
+ _mesh=static_cast<MEDCouplingIMesh *>(mesh->deepCpy());
+ std::size_t sz(other._patches.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCouplingCartesianAMRPatch *patch(other._patches[i]);
+ if(patch)
+ _patches[i]=patch->deepCpy(this);
+ }
+}
+
MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
- const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop):_father(0)
+ const double *originStart, const double *originStop, const double *dxyzStart, const double *dxyzStop)
{
_mesh=MEDCouplingIMesh::New(meshName,spaceDim,nodeStrctStart,nodeStrctStop,originStart,originStop,dxyzStart,dxyzStop);
}
-MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh):_father(father)
+MEDCouplingCartesianAMRMeshGen::MEDCouplingCartesianAMRMeshGen(MEDCouplingIMesh *mesh)
{
- if(!_father)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen(MEDCouplingIMesh *mesh) constructor : empty father !");
if(!mesh)
throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen(MEDCouplingIMesh *mesh) constructor : The input mesh is null !");
mesh->checkCoherency();
}
}
-/*!
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in refined reference.
- * \param [in] factors - the factors per axis.
- */
-void MEDCouplingCartesianAMRMeshGen::ApplyFactorsOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, const std::vector<int>& factors)
+int MEDCouplingCartesianAMRMeshGen::GetGhostLevelInFineRef(int ghostLev, const std::vector<int>& factors)
{
- std::size_t sz(factors.size());
- if(sz!=partBeforeFact.size())
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyFactorsOnCompactFrmt : size of input vectors must be the same !");
- for(std::size_t i=0;i<sz;i++)
+ if(ghostLev<0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::GetGhostLevelInFineRef : the ghost size must be >=0 !");
+ if(factors.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::GetGhostLevelInFineRef : no factors defined !");
+ int ghostLevInPatchRef;
+ if(ghostLev==0)
+ ghostLevInPatchRef=0;
+ else
{
- partBeforeFact[i].first*=factors[i];
- partBeforeFact[i].second*=factors[i];
+ ghostLevInPatchRef=(ghostLev-1)/factors[0]+1;
+ for(std::size_t i=0;i<factors.size();i++)
+ ghostLevInPatchRef=std::max(ghostLevInPatchRef,(ghostLev-1)/factors[i]+1);
}
+ return ghostLevInPatchRef;
}
/*!
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
- * \param [in] ghostSize - the ghost size of zone for all axis.
+ * This method returns a sub set of \a all. The subset is defined by the \a head in the tree defined by \a this.
+ * Elements in \a all are expected to be sorted from god father to most refined structure.
*/
-void MEDCouplingCartesianAMRMeshGen::ApplyGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
+std::vector<const DataArrayDouble *> MEDCouplingCartesianAMRMeshGen::extractSubTreeFromGlobalFlatten(const MEDCouplingCartesianAMRMeshGen *head, const std::vector<const DataArrayDouble *>& all) const
{
- if(ghostSize<0)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyGhostOnCompactFrmt : ghost size must be >= 0 !");
- std::size_t sz(partBeforeFact.size());
- for(std::size_t i=0;i<sz;i++)
+ int maxLev(getMaxNumberOfLevelsRelativeToThis());
+ std::vector<const DataArrayDouble *> ret;
+ std::vector<const MEDCouplingCartesianAMRMeshGen *> meshes(1,this);
+ std::size_t kk(0);
+ for(int i=0;i<maxLev;i++)
{
- partBeforeFact[i].first+=ghostSize;
- partBeforeFact[i].second+=ghostSize;
+ std::vector<const MEDCouplingCartesianAMRMeshGen *> meshesTmp;
+ for(std::vector<const MEDCouplingCartesianAMRMeshGen *>::const_iterator it=meshes.begin();it!=meshes.end();it++)
+ {
+ if((*it)==head || head->isObjectInTheProgeny(*it))
+ ret.push_back(all[kk]);
+ kk++;
+ std::vector< const MEDCouplingCartesianAMRPatch *> ps((*it)->getPatches());
+ for(std::vector< const MEDCouplingCartesianAMRPatch *>::const_iterator it0=ps.begin();it0!=ps.end();it0++)
+ {
+ const MEDCouplingCartesianAMRMeshGen *mesh((*it0)->getMesh());
+ meshesTmp.push_back(mesh);
+ }
+ }
+ meshes=meshesTmp;
}
+ if(kk!=all.size())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::extractSubTreeFromGlobalFlatten : the size of input vector is not compatible with number of leaves in this !");
+ return ret;
}
-/*!
- * This method is different than ApplyGhostOnCompactFrmt
- *
- * \param [in,out] partBeforeFact - the part of a image mesh in compact format that will be put in ghost reference.
- * \param [in] ghostSize - the ghost size of zone for all axis.
- */
-void MEDCouplingCartesianAMRMeshGen::ApplyAllGhostOnCompactFrmt(std::vector< std::pair<int,int> >& partBeforeFact, int ghostSize)
+void MEDCouplingCartesianAMRMeshGen::dumpPatchesOf(const std::string& varName, std::ostream& oss) const
{
- if(ghostSize<0)
- throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshGen::ApplyAllGhostOnCompactFrmt : ghost size must be >= 0 !");
- std::size_t sz(partBeforeFact.size());
- for(std::size_t i=0;i<sz;i++)
+ std::size_t j(0);
+ for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatch> >::const_iterator it=_patches.begin();it!=_patches.end();it++)
{
- partBeforeFact[i].first-=ghostSize;
- partBeforeFact[i].second+=ghostSize;
+ const MEDCouplingCartesianAMRPatch *patch(*it);
+ if(patch)
+ {
+ std::ostringstream oss2; oss2 << varName << ".addPatch([";
+ const std::vector< std::pair<int,int> >& bltr(patch->getBLTRRange());
+ std::size_t sz(bltr.size());
+ for(std::size_t i=0;i<sz;i++)
+ {
+ oss2 << "(" << bltr[i].first << "," << bltr[i].second << ")";
+ if(i!=sz-1)
+ oss2 << ",";
+ }
+ oss2 << "],[";
+ std::copy(_factors.begin(),_factors.end(),std::ostream_iterator<int>(oss2,","));
+ oss2 << "])\n";
+ oss << oss2.str();
+ std::ostringstream oss3; oss3 << varName << "[" << j++ << "]";
+ patch->getMesh()->dumpPatchesOf(oss3.str(),oss);
+ }
}
}
}
}
-MEDCouplingCartesianAMRMeshSub::MEDCouplingCartesianAMRMeshSub(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh):MEDCouplingCartesianAMRMeshGen(father,mesh)
+MEDCouplingCartesianAMRMeshSub::MEDCouplingCartesianAMRMeshSub(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh):MEDCouplingCartesianAMRMeshGen(mesh),_father(father)
+{
+ if(!_father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub(MEDCouplingCartesianAMRMeshGen *father, MEDCouplingIMesh *mesh) constructor : empty father !");
+}
+
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshSub::getFather() const
+{
+ return _father;
+}
+
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMeshSub::getGodFather() const
{
+ if(!_father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub::getGodFather : Impossible to find a god father because there is a hole in chain !");
+ return _father->getGodFather();
+}
+
+/*!
+ * This method returns the level of \a this. 0 for god father. 1 for children of god father ...
+ */
+int MEDCouplingCartesianAMRMeshSub::getAbsoluteLevel() const
+{
+ if(!_father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub::getAbsoluteLevel : Impossible to find a god father because there is a hole in chain !");
+ return _father->getAbsoluteLevel()+1;
+}
+
+void MEDCouplingCartesianAMRMeshSub::detachFromFather()
+{
+ _father=0;
+ declareAsNew();
+}
+
+int MEDCouplingCartesianAMRMeshSub::getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const
+{
+ if(this==ref)
+ return 0;
+ if(_father==0)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub::getAbsoluteLevelRelativeTo : ref is not in the progeny of this !");
+ else
+ return _father->getAbsoluteLevelRelativeTo(ref)+1;
+}
+
+MEDCouplingCartesianAMRMeshSub::MEDCouplingCartesianAMRMeshSub(const MEDCouplingCartesianAMRMeshSub& other, MEDCouplingCartesianAMRMeshGen *father):MEDCouplingCartesianAMRMeshGen(other),_father(father)
+{
+}
+
+MEDCouplingCartesianAMRMeshSub *MEDCouplingCartesianAMRMeshSub::deepCpy(MEDCouplingCartesianAMRMeshGen *fath) const
+{
+ return new MEDCouplingCartesianAMRMeshSub(*this,fath);
+}
+
+/*!
+ * \sa getPositionRelativeTo
+ */
+void MEDCouplingCartesianAMRMeshSub::getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector<int>& ret) const
+{
+ if(this==ref)
+ return ;
+ if(!_father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMeshSub::getPositionRelativeToInternal : ref is not in the progeny of this !");
+ int myId(_father->getPatchIdFromChildMesh(this));
+ ret.push_back(myId);
+ _father->getPositionRelativeToInternal(ref,ret);
}
MEDCouplingCartesianAMRMesh *MEDCouplingCartesianAMRMesh::New(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
return new MEDCouplingCartesianAMRMesh(meshName,spaceDim,nodeStrctStart,nodeStrctStop,originStart,originStop,dxyzStart,dxyzStop);
}
-void MEDCouplingCartesianAMRMesh::setData(MEDCouplingDataForGodFather *data)
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMesh::getFather() const
+{
+ //I'm god father ! No father !
+ return 0;
+}
+
+const MEDCouplingCartesianAMRMeshGen *MEDCouplingCartesianAMRMesh::getGodFather() const
+{
+ return this;
+}
+
+int MEDCouplingCartesianAMRMesh::getAbsoluteLevel() const
+{
+ return 0;
+}
+
+void MEDCouplingCartesianAMRMesh::detachFromFather()
+{//not a bug - do nothing
+}
+
+int MEDCouplingCartesianAMRMesh::getAbsoluteLevelRelativeTo(const MEDCouplingCartesianAMRMeshGen *ref) const
+{
+ if(this==ref)
+ return 0;
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::getAbsoluteLevelRelativeTo : ref is not in the progeny of this !");
+}
+
+std::vector<MEDCouplingCartesianAMRPatchGen *> MEDCouplingCartesianAMRMesh::retrieveGridsAt(int absoluteLev) const
+{
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatchGen> > rets;
+ retrieveGridsAtInternal(absoluteLev,rets);
+ std::vector< MEDCouplingCartesianAMRPatchGen * > ret(rets.size());
+ for(std::size_t i=0;i<rets.size();i++)
+ {
+ ret[i]=rets[i].retn();
+ }
+ return ret;
+}
+
+MEDCouplingCartesianAMRMesh *MEDCouplingCartesianAMRMesh::deepCpy(MEDCouplingCartesianAMRMeshGen *father) const
+{
+ if(father)
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::deepCpy : specifying a not null father for a God Father object !");
+ return new MEDCouplingCartesianAMRMesh(*this);
+}
+
+/*!
+ * This method creates a multi level patches split at once.
+ * This method calls as times as size of \a bso createPatchesFromCriterion. Size of \a bso and size of \a factors must be the same !
+ * \b WARNING, after the call the number of levels in \a this is equal to bso.size() + 1 !
+ *
+ * \param [in] bso
+ * \param [in] criterion
+ * \param [in] factors
+ * \param [in] eps - See DataArrayDouble::toVectorOfBool for more information about the semantic of eps.
+ *
+ * \sa createPatchesFromCriterion
+ */
+void MEDCouplingCartesianAMRMesh::createPatchesFromCriterionML(const std::vector<const INTERP_KERNEL::BoxSplittingOptions *>& bso, const DataArrayDouble *criterion, const std::vector< std::vector<int> >& factors, double eps)
+{
+ std::size_t nbOfLevs(bso.size());
+ if(nbOfLevs!=factors.size())
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterionML : size of vectors must be the same !");
+ if(nbOfLevs==0)
+ return ;
+ if(!bso[0])
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterionML : pointers in 1st arg must be not NULL !");
+ createPatchesFromCriterion(*bso[0],criterion,factors[0],eps);
+ for(std::size_t i=1;i<nbOfLevs;i++)
+ {
+ if(!bso[i])
+ throw INTERP_KERNEL::Exception("MEDCouplingCartesianAMRMesh::createPatchesFromCriterionML : presence of a NULL BoxSplittingOptions in input vector !");
+ //
+ std::vector<MEDCouplingCartesianAMRPatchGen *> elts(retrieveGridsAt((int)(i)));
+ std::size_t sz(elts.size());
+ std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatchGen> > elts2(sz);
+ std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> > elts3(sz);
+ for(std::size_t ii=0;ii<sz;ii++)
+ elts2[ii]=elts[ii];
+ //
+ static const char TMP_STR[]="TMP";
+ std::vector< std::pair<std::string,int> > fieldNames(1); fieldNames[0].first=TMP_STR; fieldNames[0].second=1;
+ MEDCouplingAutoRefCountObjectPtr<MEDCouplingAMRAttribute> att(MEDCouplingAMRAttribute::New(this,fieldNames,0));
+ att->alloc();
+ DataArrayDouble *tmpDa(const_cast<DataArrayDouble *>(att->getFieldOn(this,TMP_STR)));
+ tmpDa->cpyFrom(*criterion);
+ att->synchronizeCoarseToFine();
+ for(std::size_t ii=0;ii<sz;ii++)
+ {
+ const DataArrayDouble *critOnLeaf(att->getFieldOn(const_cast<MEDCouplingCartesianAMRMeshGen *>(elts[ii]->getMesh()),TMP_STR));
+ elts3[ii]=const_cast<DataArrayDouble *>(critOnLeaf); elts3[ii]->incrRef();
+ }
+ att=0;
+ for(std::size_t ii=0;ii<sz;ii++)
+ const_cast<MEDCouplingCartesianAMRMeshGen *>(elts[ii]->getMesh())->createPatchesFromCriterion(*bso[i],elts3[ii],factors[i],eps);
+ }
+}
+
+void MEDCouplingCartesianAMRMesh::getPositionRelativeToInternal(const MEDCouplingCartesianAMRMeshGen *ref, std::vector<int>& ret) const
+{
+
+}
+
+MEDCouplingCartesianAMRMesh::MEDCouplingCartesianAMRMesh(const MEDCouplingCartesianAMRMesh& other):MEDCouplingCartesianAMRMeshGen(other)
{
- _data=data;
}
MEDCouplingCartesianAMRMesh::MEDCouplingCartesianAMRMesh(const std::string& meshName, int spaceDim, const int *nodeStrctStart, const int *nodeStrctStop,
std::vector<const BigMemoryObject *> MEDCouplingCartesianAMRMesh::getDirectChildren() const
{
std::vector<const BigMemoryObject *> ret(MEDCouplingCartesianAMRMeshGen::getDirectChildren());
- const MEDCouplingDataForGodFather *pt(_data);
- if(pt)
- ret.push_back(pt);
return ret;
}
+
+MEDCouplingCartesianAMRMesh::~MEDCouplingCartesianAMRMesh()
+{
+}
