-// Copyright (C) 2007-2014 CEA/DEN, EDF R&D
+// Copyright (C) 2007-2020 CEA/DEN, EDF R&D
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
#include "MEDCouplingIMesh.hxx"
#include <sstream>
+#include <fstream>
-using namespace ParaMEDMEM;
+#ifdef WIN32
+#include <functional>
+#endif
+using namespace MEDCoupling;
+
+/// @cond INTERNAL
DataArrayDoubleCollection *DataArrayDoubleCollection::New(const std::vector< std::pair<std::string,int> >& fieldNames)
{
return new DataArrayDoubleCollection(fieldNames);
}
-DataArrayDoubleCollection *DataArrayDoubleCollection::deepCpy() const
+DataArrayDoubleCollection *DataArrayDoubleCollection::deepCopy() const
{
return new DataArrayDoubleCollection(*this);
}
-void DataArrayDoubleCollection::allocTuples(int nbOfTuples)
+void DataArrayDoubleCollection::allocTuples(mcIdType nbOfTuples)
{
std::size_t sz(_arrs.size());
for(std::size_t i=0;i<sz;i++)
_arrs[i].first->reAlloc(0);
}
+void DataArrayDoubleCollection::copyFrom(const DataArrayDoubleCollection& other)
+{
+ std::size_t sz(_arrs.size());
+ if(sz!=other._arrs.size())
+ throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::copyFrom : size are not the same !");
+ for(std::size_t i=0;i<sz;i++)
+ {
+ DataArrayDouble *thisArr(_arrs[i].first);
+ const DataArrayDouble *otherArr(other._arrs[i].first);
+ if(!thisArr || !otherArr)
+ throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::copyFrom : empty DataArray !");
+ thisArr->deepCopyFrom(*otherArr);
+ }
+}
+
void DataArrayDoubleCollection::spillInfoOnComponents(const std::vector< std::vector<std::string> >& compNames)
{
std::size_t sz(_arrs.size());
}
}
+std::vector< std::pair < std::string, std::vector<std::string> > > DataArrayDoubleCollection::getInfoOnComponents() const
+{
+ std::size_t sz(_arrs.size());
+ std::vector< std::pair < std::string, std::vector<std::string> > > ret(sz);
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const DataArrayDouble *elt(_arrs[i].first);
+ if(!elt)
+ throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::getInfoOnComponents : empty array !");
+ ret[i]=std::pair < std::string, std::vector<std::string> >(elt->getName(),elt->getInfoOnComponents());
+ }
+ return ret;
+}
+
+std::vector<NatureOfField> DataArrayDoubleCollection::getNatures() const
+{
+ std::size_t sz(_arrs.size());
+ std::vector<NatureOfField> ret(sz);
+ for(std::size_t i=0;i<sz;i++)
+ ret[i]=_arrs[i].second;
+ return ret;
+}
+
std::vector<DataArrayDouble *> DataArrayDoubleCollection::retrieveFields() const
{
std::size_t sz(_arrs.size());
const DataArrayDouble *DataArrayDoubleCollection::getFieldWithName(const std::string& name) const
{
std::vector<std::string> vec;
- for(std::vector< std::pair< MEDCouplingAutoRefCountObjectPtr<DataArrayDouble>, NatureOfField > >::const_iterator it=_arrs.begin();it!=_arrs.end();it++)
+ for(std::vector< std::pair< MCAuto<DataArrayDouble>, NatureOfField > >::const_iterator it=_arrs.begin();it!=_arrs.end();it++)
{
const DataArrayDouble *obj((*it).first);
if(obj)
throw INTERP_KERNEL::Exception(oss.str().c_str());
}
-void DataArrayDoubleCollection::SynchronizeFineToCoarse(int ghostLev, const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh, int patchId, const DataArrayDoubleCollection *fine, DataArrayDoubleCollection *coarse)
+DataArrayDouble *DataArrayDoubleCollection::getFieldWithName(const std::string& name)
+{
+ std::vector<std::string> vec;
+ for(std::vector< std::pair< MCAuto<DataArrayDouble>, NatureOfField > >::iterator it=_arrs.begin();it!=_arrs.end();it++)
+ {
+ DataArrayDouble *obj((*it).first);
+ if(obj)
+ {
+ if(obj->getName()==name)
+ return obj;
+ else
+ vec.push_back(obj->getName());
+ }
+ }
+ std::ostringstream oss; oss << "DataArrayDoubleCollection::getFieldWithName non const : fieldName \"" << name << "\" does not exist in this ! Possibilities are :";
+ std::copy(vec.begin(),vec.end(),std::ostream_iterator<std::string>(oss," "));
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+}
+
+DataArrayDouble *DataArrayDoubleCollection::at(mcIdType pos)
+{
+ if(pos<0 || pos>=ToIdType(_arrs.size()))
+ throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::at (non const) : pos must be in [0,nbOfFields) !");
+ return _arrs[pos].first;
+}
+
+const DataArrayDouble *DataArrayDoubleCollection::at(mcIdType pos) const
+{
+ if(pos<0 || pos>=ToIdType(_arrs.size()))
+ throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::at : pos must be in [0,nbOfFields) !");
+ return _arrs[pos].first;
+}
+
+mcIdType DataArrayDoubleCollection::size() const
+{
+ return ToIdType(_arrs.size());
+}
+
+void DataArrayDoubleCollection::SynchronizeFineToCoarse(mcIdType ghostLev, const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh, mcIdType patchId, const DataArrayDoubleCollection *fine, DataArrayDoubleCollection *coarse)
{
if(!fine || !coarse)
throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::SynchronizeFineToCoarse : the input DataArrayDouble collections must be non NULL !");
}
}
-void DataArrayDoubleCollection::SynchronizeCoarseToFine(int ghostLev, const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh, int patchId, const DataArrayDoubleCollection *coarse, DataArrayDoubleCollection *fine)
+void DataArrayDoubleCollection::SynchronizeCoarseToFine(mcIdType ghostLev, const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh, mcIdType patchId, const DataArrayDoubleCollection *coarse, DataArrayDoubleCollection *fine)
{
if(!fine || !coarse)
throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::SynchronizeCoarseToFine : the input DataArrayDouble collections must be non NULL !");
}
}
-void DataArrayDoubleCollection::SynchronizeFineEachOther(int patchId, int ghostLev, const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh, const std::vector<const MEDCouplingCartesianAMRMeshGen *>& children, const std::vector<DataArrayDoubleCollection *>& fieldsOnFine)
+void DataArrayDoubleCollection::SynchronizeFineEachOther(mcIdType patchId, mcIdType ghostLev, const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh, const std::vector<const MEDCouplingCartesianAMRMeshGen *>& children, const std::vector<DataArrayDoubleCollection *>& fieldsOnFine)
{
if(!fatherOfFineMesh)
throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::SynchronizeFineEachOther : father is NULL !");
return ;
std::size_t nbOfCall(fieldsOnFine[0]->_arrs.size());
for(std::size_t i=0;i<sz;i++)
- if(fatherOfFineMesh->getPatchIdFromChildMesh(children[i])!=(int)i)
+ if(fatherOfFineMesh->getPatchIdFromChildMesh(children[i])!=ToIdType(i))
throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::SynchronizeFineEachOther : internal error !");
for(std::size_t i=1;i<sz;i++)
if(nbOfCall!=fieldsOnFine[i]->_arrs.size())
/*!
* This method updates \a p1dac ghost zone parts using \a p2dac (which is really const). \a p2 is in the neighborhood of \a p1 (which size is defined by \a ghostLev).
*/
-void DataArrayDoubleCollection::SynchronizeGhostZoneOfOneUsingTwo(int ghostLev, const MEDCouplingCartesianAMRPatch *p1, const DataArrayDoubleCollection *p1dac, const MEDCouplingCartesianAMRPatch *p2, const DataArrayDoubleCollection *p2dac)
+void DataArrayDoubleCollection::SynchronizeGhostZoneOfOneUsingTwo(mcIdType ghostLev, const MEDCouplingCartesianAMRPatch *p1, const DataArrayDoubleCollection *p1dac, const MEDCouplingCartesianAMRPatch *p2, const DataArrayDoubleCollection *p2dac)
{
if(!p1 || !p1dac || !p2 || !p2dac)
throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::SynchronizeGhostZoneOfOneUsingTwo : input pointer must be not NULL !");
for(std::size_t i=0;i<sz;i++)
{
const DataArrayDouble *zeArrWhichGhostsWillBeUpdated(p1dac->_arrs[i].first);
- MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoMixedLev(ghostLev,p1,p2,const_cast<DataArrayDouble *>(zeArrWhichGhostsWillBeUpdated),p2dac->_arrs[i].first);
+ DataArrayDoubleCollection::CheckSameNatures(p1dac->_arrs[i].second,p2dac->_arrs[i].second);
+ bool isConservative(DataArrayDoubleCollection::IsConservativeNature(p1dac->_arrs[i].second));
+ MEDCouplingCartesianAMRPatch::UpdateNeighborsOfOneWithTwoMixedLev(ghostLev,p1,p2,const_cast<DataArrayDouble *>(zeArrWhichGhostsWillBeUpdated),p2dac->_arrs[i].first,isConservative);
}
}
-void DataArrayDoubleCollection::SynchronizeCoarseToFineOnlyInGhostZone(int ghostLev, const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh, int patchId, const DataArrayDoubleCollection *coarse, DataArrayDoubleCollection *fine)
+void DataArrayDoubleCollection::SynchronizeCoarseToFineOnlyInGhostZone(mcIdType ghostLev, const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh, mcIdType patchId, const DataArrayDoubleCollection *coarse, DataArrayDoubleCollection *fine)
{
if(!fine || !coarse)
throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::SynchronizeCoarseToFineOnlyInGhostZone : the input DataArrayDouble collections must be non NULL !");
fatherOfFineMesh->fillCellFieldOnPatchOnlyOnGhostZone(patchId,coarse->_arrs[i].first,fine->_arrs[i].first,ghostLev);
}
-void DataArrayDoubleCollection::synchronizeMyGhostZoneUsing(int ghostLev, const DataArrayDoubleCollection& other, const MEDCouplingCartesianAMRPatch *thisp, const MEDCouplingCartesianAMRPatch *otherp, const MEDCouplingCartesianAMRMeshGen *father) const
+void DataArrayDoubleCollection::synchronizeMyGhostZoneUsing(mcIdType ghostLev, const DataArrayDoubleCollection& other, const MEDCouplingCartesianAMRPatch *thisp, const MEDCouplingCartesianAMRPatch *otherp, const MEDCouplingCartesianAMRMeshGen *father) const
{
DataArrayDoubleCollection *thisNC(const_cast<DataArrayDoubleCollection *>(this));
std::size_t sz(_arrs.size());
father->fillCellFieldOnPatchOnlyOnGhostZoneWith(ghostLev,thisp,otherp,thisNC->_arrs[i].first,other._arrs[i].first);
}
-void DataArrayDoubleCollection::synchronizeMyGhostZoneUsingExt(int ghostLev, const DataArrayDoubleCollection& other, const MEDCouplingCartesianAMRPatch *thisp, const MEDCouplingCartesianAMRPatch *otherp) const
+void DataArrayDoubleCollection::synchronizeMyGhostZoneUsingExt(mcIdType ghostLev, const DataArrayDoubleCollection& other, const MEDCouplingCartesianAMRPatch *thisp, const MEDCouplingCartesianAMRPatch *otherp) const
{
DataArrayDoubleCollection *thisNC(const_cast<DataArrayDoubleCollection *>(this));
std::size_t sz(_arrs.size());
for(std::size_t i=0;i<sz;i++)
{
const std::pair<std::string,int>& info(fieldNames[i]);
+ if(info.second<=0)
+ {
+ std::ostringstream oss; oss << "DataArrayDoubleCollection constructor : At pos #" << i << " the array with name \"" << info.first << "\" as a number of components equal to " << info.second;
+ oss << " It has to be >=1 !";
+ throw INTERP_KERNEL::Exception(oss.str().c_str());
+ }
_arrs[i].first=DataArrayDouble::New();
_arrs[i].first->alloc(0,info.second);
_arrs[i].first->setName(info.first);
- names[i]=info.second;
- _arrs[i].second=ConservativeVolumic;
+ names[i]=info.first;
+ _arrs[i].second=IntensiveMaximum;
}
CheckDiscriminantNames(names);
}
_arrs[i].second=other._arrs[i].second;
const DataArrayDouble *da(other._arrs[i].first);
if(da)
- _arrs[i].first=da->deepCpy();
+ _arrs[i].first=da->deepCopy();
}
}
std::size_t DataArrayDoubleCollection::getHeapMemorySizeWithoutChildren() const
{
std::size_t ret(sizeof(DataArrayDoubleCollection));
- ret+=_arrs.capacity()*sizeof(MEDCouplingAutoRefCountObjectPtr<DataArrayDouble>);
+ ret+=_arrs.capacity()*sizeof(MCAuto<DataArrayDouble>);
return ret;
}
-std::vector<const BigMemoryObject *> DataArrayDoubleCollection::getDirectChildren() const
+std::vector<const BigMemoryObject *> DataArrayDoubleCollection::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
- for(std::vector< std::pair< MEDCouplingAutoRefCountObjectPtr<DataArrayDouble>, NatureOfField > >::const_iterator it=_arrs.begin();it!=_arrs.end();it++)
- {
- const DataArrayDouble *pt((*it).first);
- if(pt)
- ret.push_back(pt);
- }
+ for(std::vector< std::pair< MCAuto<DataArrayDouble>, NatureOfField > >::const_iterator it=_arrs.begin();it!=_arrs.end();it++)
+ ret.push_back((const DataArrayDouble *)(*it).first);
return ret;
}
void DataArrayDoubleCollection::updateTime() const
{
- for(std::vector< std::pair< MEDCouplingAutoRefCountObjectPtr<DataArrayDouble>, NatureOfField > >::const_iterator it=_arrs.begin();it!=_arrs.end();it++)
+ for(std::vector< std::pair< MCAuto<DataArrayDouble>, NatureOfField > >::const_iterator it=_arrs.begin();it!=_arrs.end();it++)
{
const DataArrayDouble *pt((*it).first);
if(pt)
bool DataArrayDoubleCollection::IsConservativeNature(NatureOfField n)
{
CheckValidNature(n);
- return n==RevIntegral || n==IntegralGlobConstraint;
+ return n==IntensiveConservation || n==ExtensiveConservation;
}
void DataArrayDoubleCollection::CheckSameNatures(NatureOfField n1, NatureOfField n2)
void DataArrayDoubleCollection::CheckValidNature(NatureOfField n)
{
- if(n!=ConservativeVolumic && n!=Integral && n!=IntegralGlobConstraint && n!=RevIntegral)
+ if(n!=IntensiveMaximum && n!=ExtensiveMaximum && n!=ExtensiveConservation && n!=IntensiveConservation)
throw INTERP_KERNEL::Exception("DataArrayDoubleCollection::CheckValidNature : unrecognized nature !");
}
return new MEDCouplingGridCollection(ms,fieldNames);
}
-MEDCouplingGridCollection *MEDCouplingGridCollection::deepCpy() const
+MEDCouplingGridCollection *MEDCouplingGridCollection::deepCopy(const MEDCouplingCartesianAMRMeshGen *newGf, const MEDCouplingCartesianAMRMeshGen *oldGf) const
{
- return new MEDCouplingGridCollection(*this);
+ return new MEDCouplingGridCollection(*this,newGf,oldGf);
}
-void MEDCouplingGridCollection::alloc(int ghostLev)
+void MEDCouplingGridCollection::alloc(mcIdType ghostLev)
{
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
{
- int nbTuples((*it).first->getNumberOfCellsAtCurrentLevelGhost(ghostLev));
+ mcIdType nbTuples((*it).first->getNumberOfCellsAtCurrentLevelGhost(ghostLev));
DataArrayDoubleCollection *dadc((*it).second);
if(dadc)
dadc->allocTuples(nbTuples);
void MEDCouplingGridCollection::dealloc()
{
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
{
DataArrayDoubleCollection *dadc((*it).second);
if(dadc)
void MEDCouplingGridCollection::spillInfoOnComponents(const std::vector< std::vector<std::string> >& compNames)
{
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
(*it).second->spillInfoOnComponents(compNames);
}
void MEDCouplingGridCollection::spillNatures(const std::vector<NatureOfField>& nfs)
{
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
(*it).second->spillNatures(nfs);
}
-bool MEDCouplingGridCollection::presenceOf(const MEDCouplingCartesianAMRMeshGen *m, int& pos) const
+std::vector< std::pair<std::string, std::vector<std::string> > > MEDCouplingGridCollection::getInfoOnComponents() const
{
- int ret(0);
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++,ret++)
+ if(_map_of_dadc.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::getInfoOnComponents : empty map !");
+ const DataArrayDoubleCollection *elt(_map_of_dadc[0].second);
+ if(!elt)
+ throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::getInfoOnComponents : null pointer !");
+ return elt->getInfoOnComponents();
+}
+
+std::vector<NatureOfField> MEDCouplingGridCollection::getNatures() const
+{
+ if(_map_of_dadc.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::getNatures : empty map !");
+ const DataArrayDoubleCollection *elt(_map_of_dadc[0].second);
+ if(!elt)
+ throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::getNatures : null pointer !");
+ return elt->getNatures();
+}
+
+bool MEDCouplingGridCollection::presenceOf(const MEDCouplingCartesianAMRMeshGen *m, mcIdType& pos) const
+{
+ mcIdType ret(0);
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++,ret++)
{
if((*it).first==m)
{
return false;
}
-const DataArrayDoubleCollection& MEDCouplingGridCollection::getFieldsAt(int pos) const
+const DataArrayDoubleCollection& MEDCouplingGridCollection::getFieldsAt(mcIdType pos) const
{
- if(pos<0 || pos>(int)_map_of_dadc.size())
+ if(pos<0 || pos>ToIdType(_map_of_dadc.size()))
throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::getFieldsAt : invalid pos given in input ! Must be in [0,size) !");
return *_map_of_dadc[pos].second;
}
-void MEDCouplingGridCollection::SynchronizeFineToCoarse(int ghostLev, const MEDCouplingGridCollection *fine, const MEDCouplingGridCollection *coarse)
+DataArrayDoubleCollection& MEDCouplingGridCollection::getFieldsAt(mcIdType pos)
+{
+ if(pos<0 || pos>ToIdType(_map_of_dadc.size()))
+ throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::getFieldsAt (non const) : invalid pos given in input ! Must be in [0,size) !");
+ return *_map_of_dadc[pos].second;
+}
+
+/*!
+ * This method copies for all grids intersecting themselves (between \a this and \a other), the values of fields of \a other to the intersecting
+ * part of fields of \a this. The fields are expected to be the same between \a other and \a this.
+ * This methods makes the hypothesis that \a this and \a other share two god father that are compatible each other that is to say with the same cell grid structure.
+ */
+void MEDCouplingGridCollection::copyOverlappedZoneFrom(mcIdType ghostLev, const MEDCouplingGridCollection& other)
+{
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ {
+ std::vector<mcIdType> deltaThis,deltaOther;
+ std::vector< std::pair<mcIdType,mcIdType> > rgThis((*it).first->positionRelativeToGodFather(deltaThis));
+ std::vector<mcIdType> thisSt((*it).first->getImageMesh()->getCellGridStructure());
+ std::transform(thisSt.begin(),thisSt.end(),thisSt.begin(),std::bind2nd(std::plus<mcIdType>(),2*ghostLev));
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it2=other._map_of_dadc.begin();it2!=other._map_of_dadc.end();it2++)
+ {
+ std::vector< std::pair<mcIdType,mcIdType> > rgOther((*it2).first->positionRelativeToGodFather(deltaOther));
+ if(MEDCouplingStructuredMesh::AreRangesIntersect(rgThis,rgOther))
+ {
+ std::vector< std::pair<mcIdType,mcIdType> > isect(MEDCouplingStructuredMesh::IntersectRanges(rgThis,rgOther));
+ std::vector< std::pair<mcIdType,mcIdType> > pThis,pOther;
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(rgThis,isect,pThis,true);
+ MEDCouplingStructuredMesh::ChangeReferenceFromGlobalOfCompactFrmt(rgOther,isect,pOther,true);
+ std::vector<mcIdType> otherSt((*it2).first->getImageMesh()->getCellGridStructure());
+ MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(pThis,ghostLev);
+ MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(pOther,ghostLev);
+ std::transform(otherSt.begin(),otherSt.end(),otherSt.begin(),std::bind2nd(std::plus<mcIdType>(),2*ghostLev));
+ mcIdType sz((*it2).second->size());
+ for(mcIdType i=0;i<sz;i++)
+ {
+ const DataArrayDouble *otherArr((*it2).second->at(i));
+ DataArrayDouble *thisArr((*it).second->at(i));
+ MCAuto<DataArrayDouble> partOfOther(MEDCouplingStructuredMesh::ExtractFieldOfDoubleFrom(otherSt,otherArr,pOther));
+ MEDCouplingStructuredMesh::AssignPartOfFieldOfDoubleUsing(thisSt,thisArr,pThis,partOfOther);
+ }
+ }
+ }
+ }
+}
+
+void MEDCouplingGridCollection::SynchronizeFineToCoarse(mcIdType ghostLev, const MEDCouplingGridCollection *fine, const MEDCouplingGridCollection *coarse)
{
if(!fine || !coarse)
throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::SynchronizeFineToCoarse : one or more input pointer is NULL !");
- const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >& mf(fine->_map_of_dadc);
- const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >& mc(coarse->_map_of_dadc);
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it=mf.begin();it!=mf.end();it++)
+ const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >& mf(fine->_map_of_dadc);
+ const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >& mc(coarse->_map_of_dadc);
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it=mf.begin();it!=mf.end();it++)
{
const MEDCouplingCartesianAMRMeshGen *fineMesh((*it).first);
const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh(fineMesh->getFather());
bool found(false);
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it0=mc.begin();it0!=mc.end() && !found;it0++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it0=mc.begin();it0!=mc.end() && !found;it0++)
{
if((*it0).first==fatherOfFineMesh)
{
found=true;
- int patchId(fatherOfFineMesh->getPatchIdFromChildMesh(fineMesh));
+ mcIdType patchId(fatherOfFineMesh->getPatchIdFromChildMesh(fineMesh));
const DataArrayDoubleCollection *coarseDaCol((*it0).second);
DataArrayDoubleCollection *coarseModified(const_cast<DataArrayDoubleCollection *>(coarseDaCol));//coarse values in DataArrayDouble will be altered
DataArrayDoubleCollection::SynchronizeFineToCoarse(ghostLev,fatherOfFineMesh,patchId,(*it).second,coarseModified);
}
}
-void MEDCouplingGridCollection::SynchronizeCoarseToFine(int ghostLev, const MEDCouplingGridCollection *coarse, const MEDCouplingGridCollection *fine)
+void MEDCouplingGridCollection::SynchronizeCoarseToFine(mcIdType ghostLev, const MEDCouplingGridCollection *coarse, const MEDCouplingGridCollection *fine)
{
if(!fine || !coarse)
throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::SynchronizeCoarseToFine : one or more input pointer is NULL !");
- const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >& mf(fine->_map_of_dadc);
- const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >& mc(coarse->_map_of_dadc);
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it=mf.begin();it!=mf.end();it++)
+ const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >& mf(fine->_map_of_dadc);
+ const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >& mc(coarse->_map_of_dadc);
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it=mf.begin();it!=mf.end();it++)
{
const MEDCouplingCartesianAMRMeshGen *fineMesh((*it).first);
const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh(fineMesh->getFather());
bool found(false);
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it0=mc.begin();it0!=mc.end() && !found;it0++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it0=mc.begin();it0!=mc.end() && !found;it0++)
{
if((*it0).first==fatherOfFineMesh)
{
found=true;
- int patchId(fatherOfFineMesh->getPatchIdFromChildMesh(fineMesh));
+ mcIdType patchId(fatherOfFineMesh->getPatchIdFromChildMesh(fineMesh));
const DataArrayDoubleCollection *fineDaCol((*it).second);
DataArrayDoubleCollection *fineModified(const_cast<DataArrayDoubleCollection *>(fineDaCol));//fine values in DataArrayDouble will be altered
DataArrayDoubleCollection::SynchronizeCoarseToFine(ghostLev,fatherOfFineMesh,patchId,(*it0).second,fineModified);
*
* \sa synchronizeFineEachOtherExt
*/
-void MEDCouplingGridCollection::synchronizeFineEachOther(int ghostLev, const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& ps) const
+void MEDCouplingGridCollection::synchronizeFineEachOther(mcIdType ghostLev, const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& ps) const
{
for(std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >::const_iterator it=ps.begin();it!=ps.end();it++)
{
- int p1,p2;
+ mcIdType p1,p2;
if(!presenceOf((*it).first->getMesh(),p1))
throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::synchronizeFineEachOther : internal error #1 !");
if(!presenceOf((*it).second->getMesh(),p2))
*
* \sa synchronizeFineEachOther
*/
-void MEDCouplingGridCollection::synchronizeFineEachOtherExt(int ghostLev, const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& ps) const
+void MEDCouplingGridCollection::synchronizeFineEachOtherExt(mcIdType ghostLev, const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& ps) const
{
for(std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >::const_iterator it=ps.begin();it!=ps.end();it++)
{
- int p1,p2;
+ mcIdType p1,p2;
if(!presenceOf((*it).first->getMesh(),p1))
throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::synchronizeFineEachOtherExt : internal error #1 !");
if(!presenceOf((*it).second->getMesh(),p2))
/*!
* The pairs returned share the same direct father. The number of returned elements must be even.
*/
-std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > MEDCouplingGridCollection::findNeighbors(int ghostLev) const
+std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > MEDCouplingGridCollection::findNeighbors(mcIdType ghostLev) const
{
std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > ret;
std::map<const MEDCouplingCartesianAMRMeshGen *,std::vector< const MEDCouplingCartesianAMRMeshGen * > > m;
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
{
const MEDCouplingCartesianAMRMeshGen *fineMesh((*it).first);
const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh(fineMesh->getFather());
{
for(std::vector<const MEDCouplingCartesianAMRMeshGen *>::const_iterator it1=(*it0).second.begin();it1!=(*it0).second.end();it1++)
{
- int patchId((*it0).first->getPatchIdFromChildMesh(*it1));
- std::vector<int> neighs((*it0).first->getPatchIdsInTheNeighborhoodOf(patchId,ghostLev));
+ mcIdType patchId((*it0).first->getPatchIdFromChildMesh(*it1));
+ std::vector<mcIdType> neighs((*it0).first->getPatchIdsInTheNeighborhoodOf(patchId,ghostLev));
const MEDCouplingCartesianAMRPatch *pRef((*it0).first->getPatch(patchId));
- for(std::vector<int>::const_iterator it2=neighs.begin();it2!=neighs.end();it2++)
+ for(std::vector<mcIdType>::const_iterator it2=neighs.begin();it2!=neighs.end();it2++)
{
const MEDCouplingCartesianAMRPatch *pLoc((*it0).first->getPatch(*it2));
ret.push_back(std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *>(pRef,pLoc));
return ret;
}
-void MEDCouplingGridCollection::SynchronizeCoarseToFineOnlyInGhostZone(int ghostLev, const MEDCouplingGridCollection *coarse, const MEDCouplingGridCollection *fine)
+void MEDCouplingGridCollection::SynchronizeCoarseToFineOnlyInGhostZone(mcIdType ghostLev, const MEDCouplingGridCollection *coarse, const MEDCouplingGridCollection *fine)
{
if(!fine || !coarse)
throw INTERP_KERNEL::Exception("MEDCouplingGridCollection::SynchronizeCoarseToFineOnlyInGhostZone : one or more input pointer is NULL !");
- const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >& mf(fine->_map_of_dadc);
- const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >& mc(coarse->_map_of_dadc);
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it=mf.begin();it!=mf.end();it++)
+ const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >& mf(fine->_map_of_dadc);
+ const std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >& mc(coarse->_map_of_dadc);
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it=mf.begin();it!=mf.end();it++)
{
const MEDCouplingCartesianAMRMeshGen *fineMesh((*it).first);
const MEDCouplingCartesianAMRMeshGen *fatherOfFineMesh(fineMesh->getFather());
bool found(false);
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it0=mc.begin();it0!=mc.end() && !found;it0++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it0=mc.begin();it0!=mc.end() && !found;it0++)
{
if((*it0).first==fatherOfFineMesh)
{
found=true;
- int patchId(fatherOfFineMesh->getPatchIdFromChildMesh(fineMesh));
+ mcIdType patchId(fatherOfFineMesh->getPatchIdFromChildMesh(fineMesh));
const DataArrayDoubleCollection *fineDaCol((*it).second);
DataArrayDoubleCollection *fineModified(const_cast<DataArrayDoubleCollection *>(fineDaCol));//fine values in DataArrayDouble will be altered
DataArrayDoubleCollection::SynchronizeCoarseToFineOnlyInGhostZone(ghostLev,fatherOfFineMesh,patchId,(*it0).second,fineModified);
void MEDCouplingGridCollection::fillIfInTheProgenyOf(const std::string& fieldName, const MEDCouplingCartesianAMRMeshGen *head, std::vector<const DataArrayDouble *>& recurseArrs) const
{
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
{
const MEDCouplingCartesianAMRMeshGen *a((*it).first);
if(head==a || head->isObjectInTheProgeny(a))
}
}
-MEDCouplingGridCollection::MEDCouplingGridCollection(const MEDCouplingGridCollection& other):RefCountObject(other),_map_of_dadc(other._map_of_dadc.size())
+MEDCouplingGridCollection::MEDCouplingGridCollection(const MEDCouplingGridCollection& other, const MEDCouplingCartesianAMRMeshGen *newGf, const MEDCouplingCartesianAMRMeshGen *oldGf):RefCountObject(other),_map_of_dadc(other._map_of_dadc.size())
{
std::size_t sz(other._map_of_dadc.size());
for(std::size_t i=0;i<sz;i++)
{
- _map_of_dadc[i].first=other._map_of_dadc[i].first;
+ std::vector<mcIdType> pos(other._map_of_dadc[i].first->getPositionRelativeTo(oldGf));
+ _map_of_dadc[i].first=newGf->getMeshAtPosition(pos);
const DataArrayDoubleCollection *dac(other._map_of_dadc[i].second);
if(dac)
- _map_of_dadc[i].second=dac->deepCpy();
+ _map_of_dadc[i].second=dac->deepCopy();
}
}
std::size_t MEDCouplingGridCollection::getHeapMemorySizeWithoutChildren() const
{
std::size_t ret(sizeof(MEDCouplingGridCollection));
- ret+=_map_of_dadc.capacity()*sizeof(std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> >);
+ ret+=_map_of_dadc.capacity()*sizeof(std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> >);
return ret;
}
-std::vector<const BigMemoryObject *> MEDCouplingGridCollection::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDCouplingGridCollection::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
- {
- const DataArrayDoubleCollection *col((*it).second);
- if(col)
- ret.push_back(col);
- }
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ ret.push_back((const DataArrayDoubleCollection *)(*it).second);
return ret;
}
void MEDCouplingGridCollection::updateTime() const
{
- for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MEDCouplingAutoRefCountObjectPtr<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRMeshGen *,MCAuto<DataArrayDoubleCollection> > >::const_iterator it=_map_of_dadc.begin();it!=_map_of_dadc.end();it++)
{
const MEDCouplingCartesianAMRMeshGen *a((*it).first);
if(a)
}
}
-MEDCouplingCartesianAMRPatchGF::MEDCouplingCartesianAMRPatchGF(MEDCouplingCartesianAMRMesh *mesh):MEDCouplingCartesianAMRPatchGen(mesh)
+/// @endcond
+
+MEDCouplingCartesianAMRMesh *MEDCouplingDataForGodFather::getMyGodFather()
{
+ return _gf;
}
-std::size_t MEDCouplingCartesianAMRPatchGF::getHeapMemorySizeWithoutChildren() const
+const MEDCouplingCartesianAMRMesh *MEDCouplingDataForGodFather::getMyGodFather() const
{
- return sizeof(MEDCouplingCartesianAMRPatchGF);
+ return _gf;
}
-MEDCouplingDataForGodFather::MEDCouplingDataForGodFather(MEDCouplingCartesianAMRMeshGen *gf):_gf(gf),_tlc(gf)
+MEDCouplingDataForGodFather::MEDCouplingDataForGodFather(MEDCouplingCartesianAMRMesh *gf):_gf(gf),_tlc(gf)
{
if(!gf)
throw INTERP_KERNEL::Exception("MEDCouplingDataForGodFather constructor : A data has to be attached to a AMR Mesh instance !");
_tlc.checkConst();
}
-bool MEDCouplingDataForGodFather::changeGodFather(MEDCouplingCartesianAMRMeshGen *gf)
+bool MEDCouplingDataForGodFather::changeGodFather(MEDCouplingCartesianAMRMesh *gf)
{
bool ret(_tlc.keepTrackOfNewTL(gf));
if(ret)
return ret;
}
-MEDCouplingDataForGodFather::MEDCouplingDataForGodFather(const MEDCouplingDataForGodFather& other):RefCountObject(other),_gf(other._gf),_tlc(other._gf)
+MEDCouplingDataForGodFather::MEDCouplingDataForGodFather(const MEDCouplingDataForGodFather& other, bool deepCpyGF):RefCountObject(other),_gf(other._gf),_tlc(other._gf)
{
other._tlc.checkConst();
+ if(deepCpyGF)
+ {
+ const MEDCouplingCartesianAMRMesh *gf(other._gf);
+ if(gf)
+ _gf=gf->deepCopy(0);
+ _tlc.keepTrackOfNewTL(_gf);
+ }
}
/*!
* This method creates, attach to a main AMR mesh \a gf ( called god father :-) ) and returns a data linked to \a gf ready for the computation.
*/
-MEDCouplingAMRAttribute *MEDCouplingAMRAttribute::New(MEDCouplingCartesianAMRMeshGen *gf, const std::vector< std::pair<std::string,int> >& fieldNames, int ghostLev)
+MEDCouplingAMRAttribute *MEDCouplingAMRAttribute::New(MEDCouplingCartesianAMRMesh *gf, const std::vector< std::pair<std::string,int> >& fieldNames, mcIdType ghostLev)
{
return new MEDCouplingAMRAttribute(gf,fieldNames,ghostLev);
}
-MEDCouplingAMRAttribute *MEDCouplingAMRAttribute::New(MEDCouplingCartesianAMRMeshGen *gf, const std::vector< std::pair<std::string, std::vector<std::string> > >& fieldNames, int ghostLev)
+MEDCouplingAMRAttribute *MEDCouplingAMRAttribute::New(MEDCouplingCartesianAMRMesh *gf, const std::vector< std::pair<std::string, std::vector<std::string> > >& fieldNames, mcIdType ghostLev)
{
std::size_t sz(fieldNames.size());
std::vector< std::pair<std::string,int> > fieldNames2(sz);
fieldNames2[i].second=(int)fieldNames[i].second.size();
compNames[i]=fieldNames[i].second;
}
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingAMRAttribute> ret(New(gf,fieldNames2,ghostLev));
+ MCAuto<MEDCouplingAMRAttribute> ret(New(gf,fieldNames2,ghostLev));
ret->spillInfoOnComponents(compNames);
return ret.retn();
}
/*!
* Assign the info on components for all DataArrayDouble instance recursively stored in \a this.
- * The first dim of input \a compNames is the field id in the same order than those implicitely specified in \a fieldNames parameter of MEDCouplingAMRAttribute::New.
+ * The first dim of input \a compNames is the field id in the same order than those implicitly specified in \a fieldNames parameter of MEDCouplingAMRAttribute::New.
* The second dim of \a compNames represent the component names component per component corresponding to the field. The size of this 2nd dimension has
* to perfectly fit with those specified in MEDCouplingAMRAttribute::New.
*/
void MEDCouplingAMRAttribute::spillInfoOnComponents(const std::vector< std::vector<std::string> >& compNames)
{
_tlc.checkConst();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
(*it)->spillInfoOnComponents(compNames);
}
void MEDCouplingAMRAttribute::spillNatures(const std::vector<NatureOfField>& nfs)
{
_tlc.checkConst();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
(*it)->spillNatures(nfs);
}
-MEDCouplingAMRAttribute *MEDCouplingAMRAttribute::deepCpy() const
+MEDCouplingAMRAttribute *MEDCouplingAMRAttribute::deepCopy() const
{
- return new MEDCouplingAMRAttribute(*this);
+ return new MEDCouplingAMRAttribute(*this,true);
+}
+
+MEDCouplingAMRAttribute *MEDCouplingAMRAttribute::deepCpyWithoutGodFather() const
+{
+ return new MEDCouplingAMRAttribute(*this,false);
}
/*!
* Returns the number of levels by \b only \b considering \a this (god father instance is considered only to see if it has not changed still last update of \a this).
*
*/
-int MEDCouplingAMRAttribute::getNumberOfLevels() const
+mcIdType MEDCouplingAMRAttribute::getNumberOfLevels() const
{
checkGodFatherFrozen();
- return (int)_levs.size();
+ return ToIdType(_levs.size());
}
/*!
*/
std::vector<DataArrayDouble *> MEDCouplingAMRAttribute::retrieveFieldsOn(MEDCouplingCartesianAMRMeshGen *mesh) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
{
- int tmp(-1);
+ mcIdType tmp(-1);
if((*it)->presenceOf(mesh,tmp))
{
const DataArrayDoubleCollection& ddc((*it)->getFieldsAt(tmp));
*/
const DataArrayDouble *MEDCouplingAMRAttribute::getFieldOn(MEDCouplingCartesianAMRMeshGen *mesh, const std::string& fieldName) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
{
- int tmp(-1);
+ mcIdType tmp(-1);
if((*it)->presenceOf(mesh,tmp))
{
const DataArrayDoubleCollection& ddc((*it)->getFieldsAt(tmp));
return ddc.getFieldWithName(fieldName);
}
}
- throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::retrieveFieldOn : the mesh specified is not in the progeny of this !");
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::getFieldOn : the mesh specified is not in the progeny of this !");
+}
+
+DataArrayDouble *MEDCouplingAMRAttribute::getFieldOn(MEDCouplingCartesianAMRMeshGen *mesh, const std::string& fieldName)
+{
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
+ {
+ mcIdType tmp(-1);
+ if((*it)->presenceOf(mesh,tmp))
+ {
+ DataArrayDoubleCollection& ddc((*it)->getFieldsAt(tmp));
+ return ddc.getFieldWithName(fieldName);
+ }
+ }
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::getFieldOn non const : the mesh specified is not in the progeny of this !");
}
/*!
{
std::vector<const DataArrayDouble *> recurseArrs;
std::size_t lev(0);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++,lev++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++,lev++)
{
- int tmp(-1);
+ mcIdType tmp(-1);
if((*it)->presenceOf(mesh,tmp))
{
const DataArrayDoubleCollection& ddc((*it)->getFieldsAt(tmp));
MEDCouplingFieldDouble *MEDCouplingAMRAttribute::buildCellFieldOnWithGhost(MEDCouplingCartesianAMRMeshGen *mesh, const std::string& fieldName) const
{
const DataArrayDouble *arr(0);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
{
- int tmp(-1);
+ mcIdType tmp(-1);
if((*it)->presenceOf(mesh,tmp))
{
const DataArrayDoubleCollection& ddc((*it)->getFieldsAt(tmp));
}
if(!arr)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::buildCellFieldOnWithGhost : the mesh specified is not in the progeny of this !");
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingIMesh> im(mesh->getImageMesh()->buildWithGhost(_ghost_lev));
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret(MEDCouplingFieldDouble::New(ON_CELLS));
+ MCAuto<MEDCouplingIMesh> im(mesh->getImageMesh()->buildWithGhost(_ghost_lev));
+ MCAuto<MEDCouplingFieldDouble> ret(MEDCouplingFieldDouble::New(ON_CELLS));
ret->setMesh(im);
ret->setArray(const_cast<DataArrayDouble *>(arr));
ret->setName(arr->getName());
*/
MEDCouplingFieldDouble *MEDCouplingAMRAttribute::buildCellFieldOnWithoutGhost(MEDCouplingCartesianAMRMeshGen *mesh, const std::string& fieldName) const
{
- //tony
const DataArrayDouble *arr(0);
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
{
- int tmp(-1);
+ mcIdType tmp(-1);
if((*it)->presenceOf(mesh,tmp))
{
const DataArrayDoubleCollection& ddc((*it)->getFieldsAt(tmp));
if(!arr)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::buildCellFieldOnWithoutGhost : the mesh specified is not in the progeny of this !");
//
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingIMesh> im(mesh->getImageMesh()->buildWithGhost(_ghost_lev));
- std::vector<int> cgs(mesh->getImageMesh()->getCellGridStructure()),cgsWG(im->getCellGridStructure());
- MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> arr2(DataArrayDouble::New());
+ MCAuto<MEDCouplingIMesh> im(mesh->getImageMesh()->buildWithGhost(_ghost_lev));
+ std::vector<mcIdType> cgs(mesh->getImageMesh()->getCellGridStructure()),cgsWG(im->getCellGridStructure());
+ MCAuto<DataArrayDouble> arr2(DataArrayDouble::New());
arr2->alloc(mesh->getImageMesh()->getNumberOfCells(),arr->getNumberOfComponents());
- std::vector< std::pair<int,int> > cgs2(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(cgs));
+ std::vector< std::pair<mcIdType,mcIdType> > cgs2(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(cgs));
MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(cgs2,_ghost_lev);
- std::vector<int> fakeFactors(mesh->getImageMesh()->getSpaceDimension(),1);
+ std::vector<mcIdType> fakeFactors(mesh->getImageMesh()->getSpaceDimension(),1);
MEDCouplingIMesh::SpreadCoarseToFine(arr,cgsWG,arr2,cgs2,fakeFactors);
arr2->copyStringInfoFrom(*arr);
//
- MEDCouplingAutoRefCountObjectPtr<MEDCouplingFieldDouble> ret(MEDCouplingFieldDouble::New(ON_CELLS));
+ MCAuto<MEDCouplingFieldDouble> ret(MEDCouplingFieldDouble::New(ON_CELLS));
ret->setMesh(mesh->getImageMesh());
ret->setArray(arr2);
ret->setName(arr->getName());
return ret.retn();
}
+
+std::string MEDCouplingAMRAttribute::writeVTHB(const std::string& fileName) const
+{
+ static const char EXT[]=".vthb";
+ std::string baseName,extName,zeFileName;
+ MEDCouplingMesh::SplitExtension(fileName,baseName,extName);
+ if(extName==EXT)
+ zeFileName=fileName;
+ else
+ { zeFileName=baseName; zeFileName+=EXT; }
+ //
+ std::ofstream ofs(fileName.c_str());
+ ofs << "<VTKFile type=\"vtkOverlappingAMR\" version=\"1.1\" byte_order=\"" << MEDCouplingByteOrderStr() << "\">\n";
+ const MEDCouplingCartesianAMRMesh *gf(getMyGodFather());
+ ofs << " <vtkOverlappingAMR origin=\"";
+ const MEDCouplingIMesh *gfm(gf->getImageMesh());
+ std::vector<double> orig(gfm->getOrigin());
+ std::vector<double> spacing(gfm->getDXYZ());
+ mcIdType dim(ToIdType(orig.size()));
+ std::copy(orig.begin(),orig.end(),std::ostream_iterator<double>(ofs," ")); ofs << "\" grid_description=\"";
+ for(mcIdType i=0;i<dim;i++)
+ {
+ char tmp[2]; tmp[0]=(char)(int('X')+i); tmp[1]='\0';
+ ofs << tmp;
+ }
+ ofs << "\">\n";
+ //
+ mcIdType maxLev(gf->getMaxNumberOfLevelsRelativeToThis()),kk(0);
+ for(mcIdType i=0;i<maxLev;i++)
+ {
+ std::vector<MEDCouplingCartesianAMRPatchGen *> patches(gf->retrieveGridsAt(i));
+ std::size_t sz(patches.size());
+ std::vector< MCAuto<MEDCouplingCartesianAMRPatchGen> > patchesSafe(sz);
+ for(std::size_t j=0;j<sz;j++)
+ patchesSafe[j]=patches[j];
+ if(sz==0)
+ continue;
+ ofs << " <Block level=\"" << i << "\" spacing=\"";
+ std::copy(spacing.begin(),spacing.end(),std::ostream_iterator<double>(ofs," "));
+ ofs << "\">\n";
+ if(i!=maxLev-1)
+ {
+ std::vector<mcIdType> factors(patches[0]->getMesh()->getFactors());
+ for(mcIdType k=0;k<dim;k++)
+ spacing[k]*=1./((double) factors[k]);
+ }
+ std::size_t jj(0);
+ for(std::vector<MEDCouplingCartesianAMRPatchGen *>::const_iterator it=patches.begin();it!=patches.end();it++,jj++,kk++)
+ {
+ ofs << " <DataSet index=\"" << jj << "\" amr_box=\"";
+ const MEDCouplingCartesianAMRPatch *patchCast(dynamic_cast<const MEDCouplingCartesianAMRPatch *>(*it));
+ const MEDCouplingCartesianAMRMeshGen *mesh((*it)->getMesh());
+ if(patchCast)
+ {
+ const std::vector< std::pair<mcIdType,mcIdType> >& bltr(patchCast->getBLTRRangeRelativeToGF());
+ for(mcIdType pp=0;pp<dim;pp++)
+ ofs << bltr[pp].first << " " << bltr[pp].second-1 << " ";
+ }
+ else
+ {
+ const MEDCouplingIMesh *im((*it)->getMesh()->getImageMesh());
+ std::vector<mcIdType> cgs(im->getCellGridStructure());
+ for(mcIdType pp=0;pp<dim;pp++)
+ ofs << "0 " << cgs[pp]-1 << " ";
+ }
+ ofs << "\" file=\"";
+ //
+ mcIdType tmp(-1);
+ if(_levs[i]->presenceOf((*it)->getMesh(),tmp))
+ {
+ const DataArrayDoubleCollection& ddc(_levs[i]->getFieldsAt(tmp));
+ std::vector<DataArrayDouble *> arrs(ddc.retrieveFields());
+ std::size_t nbFields(arrs.size());
+ std::vector< MCAuto<DataArrayDouble> > arrsSafe(nbFields),arrs2Safe(nbFields);
+ std::vector< const MEDCouplingFieldDouble *> fields(nbFields);
+ std::vector< MCAuto<MEDCouplingFieldDouble> > fieldsSafe(nbFields);
+ for(std::size_t pp=0;pp<nbFields;pp++)
+ arrsSafe[pp]=arrs[pp];
+ for(std::size_t pp=0;pp<nbFields;pp++)
+ {
+ MCAuto<MEDCouplingIMesh> im(mesh->getImageMesh()->buildWithGhost(_ghost_lev));
+ std::vector<mcIdType> cgs(mesh->getImageMesh()->getCellGridStructure()),cgsWG(im->getCellGridStructure());
+ arrs2Safe[pp]=DataArrayDouble::New();
+ arrs2Safe[pp]->alloc(mesh->getImageMesh()->getNumberOfCells(),arrs[pp]->getNumberOfComponents());
+ std::vector< std::pair<mcIdType,mcIdType> > cgs2(MEDCouplingStructuredMesh::GetCompactFrmtFromDimensions(cgs));
+ MEDCouplingStructuredMesh::ApplyGhostOnCompactFrmt(cgs2,_ghost_lev);
+ std::vector<mcIdType> fakeFactors(mesh->getImageMesh()->getSpaceDimension(),1);
+ MEDCouplingIMesh::SpreadCoarseToFine(arrs[pp],cgsWG,arrs2Safe[pp],cgs2,fakeFactors);
+ arrs2Safe[pp]->copyStringInfoFrom(*arrs[pp]);
+ //
+ fieldsSafe[pp]=MEDCouplingFieldDouble::New(ON_CELLS); fields[pp]=fieldsSafe[pp];
+ fieldsSafe[pp]->setMesh(mesh->getImageMesh());
+ fieldsSafe[pp]->setArray(arrs2Safe[pp]);
+ fieldsSafe[pp]->setName(arrs[pp]->getName());
+ }
+ std::ostringstream vtiFileName; vtiFileName << baseName << "_" << kk << ".vti";
+ MEDCouplingFieldDouble::WriteVTK(vtiFileName.str(),fields,true);
+ //
+ ofs << vtiFileName.str() << "\">\n";
+ ofs << " \n </DataSet>\n";
+ }
+ }
+ ofs << " </Block>\n";
+ }
+ //
+ ofs << " </vtkOverlappingAMR>\n";
+ ofs << "</VTKFile>\n";
+ return zeFileName;
+}
+
+ /*!
+ * This method is useful just after a remesh after a time step computation to project values in \a this to the new
+ * mesh \a targetGF.
+ *
+ * This method performs a projection from \a this to a target AMR mesh \a targetGF.
+ * This method performs the projection by trying to transfer the finest information to \a targetGF.
+ * \b WARNING this method does not update the ghost zone, if any.
+ * The level0 of \a this god father must have the same structure than those of \a targetGF.
+ *
+ * This method makes checks that ghost size of \a this and \a targetGF are the same, and that
+ * the number of levels in \a this and in \a targetGF are also the same.
+ */
+MEDCouplingAMRAttribute *MEDCouplingAMRAttribute::projectTo(MEDCouplingCartesianAMRMesh *targetGF) const
+{
+ if(!targetGF)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::projectTo : given other target god is NULL !");
+ if(_levs.empty())
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::projectTo : no levels in this !");
+ const MEDCouplingGridCollection *lev0(_levs[0]);
+ if(!lev0)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::projectTo : lev0 is NULL !");
+ std::vector< std::pair < std::string, std::vector<std::string> > > fieldNames(lev0->getInfoOnComponents());
+ MCAuto<MEDCouplingAMRAttribute> ret(MEDCouplingAMRAttribute::New(targetGF,fieldNames,_ghost_lev));
+ ret->spillNatures(lev0->getNatures());
+ ret->alloc();
+ mcIdType nbLevs(getNumberOfLevels());
+ if(targetGF->getMaxNumberOfLevelsRelativeToThis()!=nbLevs)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::projectTo : number of levels of this and targetGF must be the same !");
+ // first step copy level0
+ if(getMyGodFather()->getImageMesh()->getCellGridStructure()!=targetGF->getImageMesh()->getCellGridStructure())
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::projectTo : god father of this and target ones do not have the same structure !");
+ const DataArrayDoubleCollection& col(lev0->getFieldsAt(0));
+ DataArrayDoubleCollection& colTarget(ret->_levs[0]->getFieldsAt(0));
+ colTarget.copyFrom(col);
+ // then go deeper and deeper
+ for(mcIdType i=1;i<nbLevs;i++)
+ {
+ ret->synchronizeCoarseToFineByOneLevel(i-1);
+ MEDCouplingGridCollection *targetCol(ret->_levs[i]);
+ if(!targetCol)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::projectTo : null lev of target !");
+ const MEDCouplingGridCollection *thisCol(_levs[i]);
+ if(!thisCol)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::projectTo : null lev of this !");
+ targetCol->copyOverlappedZoneFrom(_ghost_lev,*thisCol);
+ }
+ return ret.retn();
+}
+
/*!
* This method synchronizes from fine to coarse direction arrays. This method makes the hypothesis that \a this has been allocated before using
* MEDCouplingAMRAttribute::alloc method.
+ * This method \b DOES \b NOT \b UPDATE the ghost zones (neither the fine not the coarse)
*
* \sa synchronizeFineToCoarseBetween
*/
while(sz>1)
{
sz--;
- synchronizeFineToCoarseByOneLevel((int)sz);
+ synchronizeFineToCoarseByOneLevel(ToIdType(sz));
}
}
* This method allows to synchronizes fields on fine patches on level \a fromLev to coarser patches at \a toLev level.
* This method operates step by step performing the synchronization the \a fromLev to \a fromLev - 1, then \a fromLev -1 to \a fromLev - 2 ...
* until reaching \a toLev level.
+ * This method \b DOES \b NOT \b UPDATE the ghost zones (neither the fine not the coarse).
*
* \param [in] fromLev - an existing level considered as fine so bigger than \a toLev
* \param [in] toLev - an existing level considered as the target level to reach.
*
*/
-void MEDCouplingAMRAttribute::synchronizeFineToCoarseBetween(int fromLev, int toLev)
+void MEDCouplingAMRAttribute::synchronizeFineToCoarseBetween(mcIdType fromLev, mcIdType toLev)
{
- int nbl(getNumberOfLevels());
+ mcIdType nbl(getNumberOfLevels());
if(fromLev<0 || toLev<0 || fromLev>=nbl || toLev>=nbl)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeFineToCoarseBetween : fromLev and toLev must be >= 0 and lower than number of levels in this !");
if(fromLev==toLev)
return ;//nothing to do
if(fromLev<toLev)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeFineToCoarseBetween : the fromLev level is lower than toLev level ! Call synchronizeFineToCoarseBetween ");
- for(int i=fromLev;i>toLev;i--)
+ for(mcIdType i=fromLev;i>toLev;i--)
synchronizeFineToCoarseByOneLevel(i);
}
/*!
* This method synchronizes from coarse to fine arrays and fine to fine each other (if _ghost_lev is >0). This method makes the hypothesis that \a this has been allocated before using
* MEDCouplingAMRAttribute::alloc method.
+ * This method \b DOES \b UPDATE \b the \b ghost \b zone (contrary to synchronizeFineToCoarse method)
*/
void MEDCouplingAMRAttribute::synchronizeCoarseToFine()
{
std::size_t sz(_levs.size());
//
for(std::size_t i=0;i<sz-1;i++)
- synchronizeCoarseToFineByOneLevel((int)i);
+ synchronizeCoarseToFineByOneLevel(ToIdType(i));
}
/*!
* This method allows to synchronizes fields on coarse patches on level \a fromLev to their respective refined patches at \a toLev level.
* This method operates step by step performing the synchronization the \a fromLev to \a fromLev + 1, then \a fromLev + 1 to \a fromLev + 2 ...
* until reaching \a toLev level.
+ * This method \b DOES \b UPDATE \b the \b ghost \b zone (contrary to synchronizeFineToCoarseBetween method)
*
* \param [in] fromLev - an existing level considered as coarse so lower than \a toLev
* \param [in] toLev - an existing level considered as the target level to reach.
*/
-void MEDCouplingAMRAttribute::synchronizeCoarseToFineBetween(int fromLev, int toLev)
+void MEDCouplingAMRAttribute::synchronizeCoarseToFineBetween(mcIdType fromLev, mcIdType toLev)
{
- int nbl(getNumberOfLevels());
+ mcIdType nbl(getNumberOfLevels());
if(fromLev<0 || toLev<0 || fromLev>=nbl || toLev>=nbl)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeCoarseToFineBetween : fromLev and toLev must be >= 0 and lower than number of levels in this !");
if(fromLev==toLev)
return ;//nothing to do
if(fromLev>toLev)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeCoarseToFineBetween : the fromLev level is greater than toLev level ! Call synchronizeFineToCoarseBetween instead !");
- for(int i=fromLev;i<toLev;i++)
+ for(mcIdType i=fromLev;i<toLev;i++)
synchronizeCoarseToFineByOneLevel(i);
}
*/
void MEDCouplingAMRAttribute::synchronizeAllGhostZones()
{
- if(_levs.empty())
+ mcIdType sz(getNumberOfLevels());
+ if(sz==0)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeFineEachOther : not any levels in this !");
// 1st - synchronize from coarse to the finest all the patches (excepted the god father one)
- std::size_t sz(_levs.size());
- for(std::size_t i=1;i<sz;i++)
+ for(mcIdType i=1;i<sz;i++)
{
const MEDCouplingGridCollection *fine(_levs[i]),*coarse(_levs[i-1]);
MEDCouplingGridCollection::SynchronizeCoarseToFineOnlyInGhostZone(_ghost_lev,coarse,fine);
}
// 2nd - classical direct sublevel inside common patch
- for(std::size_t i=1;i<sz;i++)
+ for(mcIdType i=1;i<sz;i++)
{
- const MEDCouplingGridCollection *fine(_levs[i]);
- if(!fine)
+ const MEDCouplingGridCollection *curLev(_levs[i]);
+ if(!curLev)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeFineEachOtherInGhostZone : presence of a NULL element !");
- fine->synchronizeFineEachOther(_ghost_lev,_neighbors[i]);
+ curLev->synchronizeFineEachOther(_ghost_lev,_neighbors[i]);
}
// 3rd - mixed level
for(std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >::const_iterator it=_mixed_lev_neighbors.begin();it!=_mixed_lev_neighbors.end();it++)
DataArrayDoubleCollection::SynchronizeGhostZoneOfOneUsingTwo(_ghost_lev,(*it).first,firstDAC,(*it).second,secondDAC);
}
// 4th - same level but with far ancestor.
- for(std::size_t i=1;i<sz;i++)
+ for(mcIdType i=1;i<sz;i++)
{
const MEDCouplingGridCollection *fine(_levs[i]);
fine->synchronizeFineEachOtherExt(_ghost_lev,_cross_lev_neighbors[i]);
}
}
+/*!
+ * This method works \b ONLY \b ON \b DIRECT \b SONS \b OF \a mesh. So only a part of patches at a given level is updated here.
+ * The ghost zone of all of these sons of \a mesh are updated using the brother patches (the patches sharing the \b SAME \a mesh).
+ * It is sometimes possible that a ghost zone of some sons of \a mesh are covered by a patch of same level but different father.
+ * For such cases, the ghost zones are \b NOT updated. If you need a more thorough (but more costly) ghost zone update use synchronizeAllGhostZonesAtASpecifiedLevel method instead.
+ *
+ * \param [in] mesh - an element in the progeny of god father in \a this, which the ghost zone of its sons will be updated each other.
+ *
+ */
+void MEDCouplingAMRAttribute::synchronizeAllGhostZonesOfDirectChidrenOf(const MEDCouplingCartesianAMRMeshGen *mesh)
+{
+ if(!mesh)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeAllGhostZonesOfDirectChidrenOf : input mesh is NULL !");
+ mcIdType level(mesh->getAbsoluteLevelRelativeTo(_gf)),sz(getNumberOfLevels());
+ if(level<0 || level>=sz-1)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeAllGhostZonesOfDirectChidrenOf : the specified level does not exist ! Must be in [0,nbOfLevelsOfThis-1) !");
+ const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& itemsToFilter(_neighbors[level+1]);
+ std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> > itemsToSync; itemsToSync.reserve(itemsToFilter.size());
+ for(std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >::const_iterator it=itemsToFilter.begin();it!=itemsToFilter.end();it++)
+ {
+ if((*it).first->getMesh()->getFather()==mesh && (*it).second->getMesh()->getFather()==mesh)
+ itemsToSync.push_back(std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *>((*it).first,(*it).second));
+ }
+ const MEDCouplingGridCollection *curLev(_levs[level+1]);
+ if(!curLev)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeAllGhostZonesOfDirectChidrenOf : presence of a NULL element !");
+ curLev->synchronizeFineEachOther(_ghost_lev,itemsToSync);
+}
+
+/*!
+ * This method updates \b all the patches at level \a level each other without consideration of their father.
+ * So this method is more time consuming than synchronizeAllGhostZonesOfDirectChidrenOf.
+ */
+void MEDCouplingAMRAttribute::synchronizeAllGhostZonesAtASpecifiedLevel(mcIdType level)
+{
+ mcIdType maxLev(getNumberOfLevels());
+ if(level<0 || level>=maxLev)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeAllGhostZonesAtASpecifiedLevel : the specified level must be in [0,maxLevel) !");
+ if(level==0)
+ return ;//at level 0 only one patch -> no need to update
+ // 1st step - updates all patches pairs at level \a level sharing the same father
+ const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& items(_neighbors[level]);
+ const MEDCouplingGridCollection *curLev(_levs[level]);
+ if(!curLev)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeAllGhostZonesAtASpecifiedLevel : presence of a NULL element !");
+ curLev->synchronizeFineEachOther(_ghost_lev,items);
+ //2nd step - updates all patches pairs at level \a level not sharing the same father
+ const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& items2(_cross_lev_neighbors[level]);
+ curLev->synchronizeFineEachOtherExt(_ghost_lev,items2);
+}
+
+/*!
+ * This method updates ghost zones of patches at level \a level whatever their father \b using \b father \b patches \b ONLY (at level \b level - 1).
+ * This method is useful to propagate to the ghost zone of childhood the modification.
+ */
+void MEDCouplingAMRAttribute::synchronizeAllGhostZonesAtASpecifiedLevelUsingOnlyFather(mcIdType level)
+{
+ mcIdType maxLev(getNumberOfLevels());
+ if(level<=0 || level>=maxLev)
+ throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeAllGhostZonesAtASpecifiedLevelUsingOnlyFather : the specified level must be in (0,maxLevel) !");
+ const MEDCouplingGridCollection *fine(_levs[level]),*coarse(_levs[level-1]);
+ MEDCouplingGridCollection::SynchronizeCoarseToFineOnlyInGhostZone(_ghost_lev,coarse,fine);
+ //_cross_lev_neighbors is not needed.
+}
+
/*!
* This method allocates all DataArrayDouble instances stored recursively in \a this.
*
void MEDCouplingAMRAttribute::alloc()
{
_tlc.resetState();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
{
MEDCouplingGridCollection *elt(*it);
if(elt)
void MEDCouplingAMRAttribute::dealloc()
{
_tlc.checkConst();
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::iterator it=_levs.begin();it!=_levs.end();it++)
{
MEDCouplingGridCollection *elt(*it);
if(elt)
}
}
-bool MEDCouplingAMRAttribute::changeGodFather(MEDCouplingCartesianAMRMeshGen *gf)
+bool MEDCouplingAMRAttribute::changeGodFather(MEDCouplingCartesianAMRMesh *gf)
{
bool ret(MEDCouplingDataForGodFather::changeGodFather(gf));
return ret;
std::size_t MEDCouplingAMRAttribute::getHeapMemorySizeWithoutChildren() const
{
std::size_t ret(sizeof(MEDCouplingAMRAttribute));
- ret+=_levs.capacity()*sizeof(MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection>);
+ ret+=_levs.capacity()*sizeof(MCAuto<MEDCouplingGridCollection>);
return ret;
}
-std::vector<const BigMemoryObject *> MEDCouplingAMRAttribute::getDirectChildren() const
+std::vector<const BigMemoryObject *> MEDCouplingAMRAttribute::getDirectChildrenWithNull() const
{
std::vector<const BigMemoryObject *> ret;
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
- {
- const MEDCouplingGridCollection *elt(*it);
- if(elt)
- ret.push_back(elt);
- }
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
+ ret.push_back((const MEDCouplingGridCollection *)*it);
return ret;
}
{//tony
}
-MEDCouplingAMRAttribute::MEDCouplingAMRAttribute(MEDCouplingCartesianAMRMeshGen *gf, const std::vector< std::pair<std::string,int> >& fieldNames, int ghostLev):MEDCouplingDataForGodFather(gf),_ghost_lev(ghostLev)
+MEDCouplingAMRAttribute::MEDCouplingAMRAttribute(MEDCouplingCartesianAMRMesh *gf, const std::vector< std::pair<std::string,int> >& fieldNames, mcIdType ghostLev):MEDCouplingDataForGodFather(gf),_ghost_lev(ghostLev)
{
//gf non empty, checked by constructor
- int maxLev(gf->getMaxNumberOfLevelsRelativeToThis());
+ mcIdType maxLev(gf->getMaxNumberOfLevelsRelativeToThis());
_levs.resize(maxLev);
- for(int i=0;i<maxLev;i++)
+ for(mcIdType i=0;i<maxLev;i++)
{
std::vector<MEDCouplingCartesianAMRPatchGen *> patches(gf->retrieveGridsAt(i));
std::size_t sz(patches.size());
- std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingCartesianAMRPatchGen> > patchesSafe(patches.size());
+ std::vector< MCAuto<MEDCouplingCartesianAMRPatchGen> > patchesSafe(patches.size());
for(std::size_t j=0;j<sz;j++)
patchesSafe[j]=patches[j];
std::vector<const MEDCouplingCartesianAMRMeshGen *> ms(sz);
}
}
-MEDCouplingAMRAttribute::MEDCouplingAMRAttribute(const MEDCouplingAMRAttribute& other):MEDCouplingDataForGodFather(other),_ghost_lev(other._ghost_lev),_levs(other._levs.size()),_neighbors(other._neighbors),_mixed_lev_neighbors(other._mixed_lev_neighbors),_cross_lev_neighbors(other._cross_lev_neighbors)
+MEDCouplingAMRAttribute::MEDCouplingAMRAttribute(const MEDCouplingAMRAttribute& other, bool deepCpyGF):MEDCouplingDataForGodFather(other,deepCpyGF),_ghost_lev(other._ghost_lev),_levs(other._levs.size()),_neighbors(other._neighbors),_mixed_lev_neighbors(other._mixed_lev_neighbors),_cross_lev_neighbors(other._cross_lev_neighbors)
{
std::size_t sz(other._levs.size());
for(std::size_t i=0;i<sz;i++)
const MEDCouplingGridCollection *elt(other._levs[i]);
if(elt)
{
- _levs[i]=other._levs[i]->deepCpy();
+ _levs[i]=other._levs[i]->deepCopy(_gf,other._gf);
+ }
+ }
+ //_cross_lev_neighbors(other._cross_lev_neighbors)
+ sz=other._neighbors.size();
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& neigh2(other._neighbors[i]);
+ std::size_t sz2(neigh2.size());
+ std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& neigh3(_neighbors[i]);
+ for(std::size_t j=0;j<sz2;j++)
+ {
+ const MEDCouplingCartesianAMRPatch *p1(neigh2[j].first),*p2(neigh2[j].second);
+ std::vector<mcIdType> pp1(p1->getMesh()->getPositionRelativeTo(other._gf)),pp2(p2->getMesh()->getPositionRelativeTo(other._gf));
+ neigh3[j].first=_gf->getPatchAtPosition(pp1);
+ neigh3[j].second=_gf->getPatchAtPosition(pp2);
+ }
+ }
+ //
+ sz=other._mixed_lev_neighbors.size();
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const MEDCouplingCartesianAMRPatch *p1(other._mixed_lev_neighbors[i].first),*p2(other._mixed_lev_neighbors[i].second);
+ std::vector<mcIdType> pp1(p1->getMesh()->getPositionRelativeTo(other._gf)),pp2(p2->getMesh()->getPositionRelativeTo(other._gf));
+ _mixed_lev_neighbors[i].first=_gf->getPatchAtPosition(pp1);
+ _mixed_lev_neighbors[i].second=_gf->getPatchAtPosition(pp2);
+ }
+ //
+ sz=other._cross_lev_neighbors.size();
+ for(std::size_t i=0;i<sz;i++)
+ {
+ const std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& neigh2(other._cross_lev_neighbors[i]);
+ std::size_t sz2(neigh2.size());
+ std::vector< std::pair<const MEDCouplingCartesianAMRPatch *,const MEDCouplingCartesianAMRPatch *> >& neigh3(_cross_lev_neighbors[i]);
+ for(std::size_t j=0;j<sz2;j++)
+ {
+ const MEDCouplingCartesianAMRPatch *p1(neigh2[j].first),*p2(neigh2[j].second);
+ std::vector<mcIdType> pp1(p1->getMesh()->getPositionRelativeTo(other._gf)),pp2(p2->getMesh()->getPositionRelativeTo(other._gf));
+ neigh3[j].first=_gf->getPatchAtPosition(pp1);
+ neigh3[j].second=_gf->getPatchAtPosition(pp2);
}
}
}
const DataArrayDoubleCollection& MEDCouplingAMRAttribute::findCollectionAttachedTo(const MEDCouplingCartesianAMRMeshGen *m) const
{
- for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
+ for(std::vector< MCAuto<MEDCouplingGridCollection> >::const_iterator it=_levs.begin();it!=_levs.end();it++)
{
const MEDCouplingGridCollection *elt(*it);
if(elt)
{
- int tmp(-1);
+ mcIdType tmp(-1);
if(elt->presenceOf(m,tmp))
{
return elt->getFieldsAt(tmp);
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::findCollectionAttachedTo : unable to find such part of mesh in this !");
}
-void MEDCouplingAMRAttribute::synchronizeFineToCoarseByOneLevel(int level)
+void MEDCouplingAMRAttribute::synchronizeFineToCoarseByOneLevel(mcIdType level)
{
- int nbl(getNumberOfLevels());
+ mcIdType nbl(getNumberOfLevels());
if(level<=0 || level>=nbl)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeFineToCoarseByOneLevel : the input level must be in ]0,nb_of_levels[ !");
const MEDCouplingGridCollection *fine(_levs[level]),*coarse(_levs[level-1]);
MEDCouplingGridCollection::SynchronizeFineToCoarse(_ghost_lev,fine,coarse);
}
-void MEDCouplingAMRAttribute::synchronizeCoarseToFineByOneLevel(int level)
+void MEDCouplingAMRAttribute::synchronizeCoarseToFineByOneLevel(mcIdType level)
{
- int nbl(getNumberOfLevels());
+ mcIdType nbl(getNumberOfLevels());
if(level<0 || level>=nbl-1)
throw INTERP_KERNEL::Exception("MEDCouplingAMRAttribute::synchronizeFineToCoarseByOneLevel : the input level must be in [0,nb_of_levels[ !");
const MEDCouplingGridCollection *fine(_levs[level+1]),*coarse(_levs[level]);
