<?xml version='1.0' encoding='iso-8859-1' ?>
-<proc>
+<!--
+ Copyright (C) 2010-2013 EDF R&D
+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License.
+
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+
+ See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
+ Author: Jean-Philippe Argaud, jean-philippe.argaud@edf.fr, EDF R&D
+-->
+<proc>
+
<objref name="computeAD" id="python:computeAD:1.0">
<base>pyobj</base>
</objref>
<member type="string" name="value"></member>
</struct>
<sequence content="SALOME_TYPES/Parameter" name="SALOME_TYPES/ParameterList"></sequence>
- <sequence content="double" name="Value1D"></sequence>
- <sequence content="Value1D" name="SALOME_TYPES/Value"></sequence>
+ <sequence content="double" name="SALOME_TYPES/Variable"></sequence>
+ <sequence content="SALOME_TYPES/Variable" name="SALOME_TYPES/VariableSequence"></sequence>
+ <sequence content="SALOME_TYPES/VariableSequence" name="SALOME_TYPES/StateSequence"></sequence>
+ <sequence content="SALOME_TYPES/StateSequence" name="SALOME_TYPES/TimeSequence"></sequence>
<sequence content="string" name="SALOME_TYPES/VarList"></sequence>
- <sequence content="SALOME_TYPES/Value" name="SALOME_TYPES/ValueList"></sequence>
<struct name="SALOME_TYPES/ParametricInput">
<member type="SALOME_TYPES/VarList" name="inputVarList"></member>
<member type="SALOME_TYPES/VarList" name="outputVarList"></member>
- <member type="SALOME_TYPES/ValueList" name="inputValues"></member>
+ <member type="SALOME_TYPES/TimeSequence" name="inputValues"></member>
<member type="SALOME_TYPES/ParameterList" name="specificParameters"></member>
</struct>
<struct name="SALOME_TYPES/ParametricOutput">
- <member type="SALOME_TYPES/ValueList" name="outputValues"></member>
+ <member type="SALOME_TYPES/TimeSequence" name="outputValues"></member>
<member type="SALOME_TYPES/ParameterList" name="specificOutputInfos"></member>
<member type="long" name="returnCode"></member>
<member type="string" name="errorMessage"></member>
<script><code>
<![CDATA[
-import numpy
-print "Entering in CreateAssimilationStudy"
-print "Name is", Name
-print "Algorithm is", Algorithm
-print "Debug is set to", Debug
+import numpy, logging
+logging.debug("CREATE Entering in CreateAssimilationStudy")
+print "Entering in the assimilation study"
+print "Name is set to........:", Name
+print "Algorithm is set to...:", Algorithm
# Create Assimilation study
from daYacsIntegration.daStudy import *
assim_study = daStudy(Name, Algorithm, Debug)
+logging.debug("CREATE Data entered are:")
+
# Algorithm parameters
try:
AlgorithmParameters
except NameError:
pass
else:
+ logging.debug("CREATE AlgorithmParameters is %s"%AlgorithmParameters)
assim_study.setAlgorithmParameters(AlgorithmParameters)
-# Data
-print "Data entered are:"
# Background
try:
Background
except NameError:
pass
else:
- #print "Background is", Background
- #print "BackgroundType is", BackgroundType
+ logging.debug("CREATE Background is set")
+ logging.debug("CREATE BackgroundType is %s"%BackgroundType)
+ logging.debug("CREATE BackgroundStored is %s"%BackgroundStored)
assim_study.setBackgroundType(BackgroundType)
+ assim_study.setBackgroundStored(BackgroundStored)
assim_study.setBackground(Background)
-# BackgroundError
+# CheckingPoint
try:
- BackgroundError
+ CheckingPoint
except NameError:
pass
else:
- #print "BackgroundError is", BackgroundError
- #print "BackgroundErrorType is", BackgroundErrorType
- assim_study.setBackgroundError(BackgroundError)
+ logging.debug("CREATE CheckingPoint is set")
+ logging.debug("CREATE CheckingPointType is %s"%CheckingPointType)
+ logging.debug("CREATE CheckingPointStored is %s"%CheckingPointStored)
+ assim_study.setCheckingPointType(CheckingPointType)
+ assim_study.setCheckingPointStored(CheckingPointStored)
+ assim_study.setCheckingPoint(CheckingPoint)
+
+# ControlInput
+try:
+ ControlInput
+except NameError:
+ pass
+else:
+ logging.debug("CREATE ControlInput is set")
+ logging.debug("CREATE ControlInputType is %s"%ControlInputType)
+ logging.debug("CREATE ControlInputStored is %s"%ControlInputStored)
+ assim_study.setControlInputType(ControlInputType)
+ assim_study.setControlInputStored(ControlInputStored)
+ assim_study.setControlInput(ControlInput)
# Observation
try:
except NameError:
pass
else:
- #print "Observation is", Observation
- #print "ObservationType is", ObservationType
+ logging.debug("CREATE Observation is set")
+ logging.debug("CREATE ObservationType is %s"%ObservationType)
+ logging.debug("CREATE ObservationStored is %s"%ObservationStored)
assim_study.setObservationType(ObservationType)
+ assim_study.setObservationStored(ObservationStored)
assim_study.setObservation(Observation)
+# BackgroundError
+try:
+ BackgroundError
+except NameError:
+ pass
+else:
+ logging.debug("CREATE BackgroundError is set")
+ logging.debug("CREATE BackgroundErrorStored is %s"%BackgroundErrorStored)
+ assim_study.setBackgroundErrorStored(BackgroundErrorStored)
+ assim_study.setBackgroundError(BackgroundError)
+
# ObservationError
try:
ObservationError
except NameError:
pass
else:
- #print "ObservationError is", ObservationError
- #print "ObservationErrorType is", ObservationErrorType
+ logging.debug("CREATE ObservationError is set")
+ logging.debug("CREATE ObservationErrorStored is %s"%ObservationErrorStored)
+ assim_study.setObservationErrorStored(ObservationErrorStored)
assim_study.setObservationError(ObservationError)
+# EvolutionError
+try:
+ EvolutionError
+except NameError:
+ pass
+else:
+ logging.debug("CREATE EvolutionError is set")
+ logging.debug("CREATE EvolutionErrorStored is %s"%EvolutionErrorStored)
+ assim_study.setEvolutionErrorStored(EvolutionErrorStored)
+ assim_study.setEvolutionError(EvolutionError)
+
# ObservationOperator
ObservationOperatorOk = 0
try:
except NameError:
pass
else:
- #print "ObservationOperator is", ObservationOperator
- #print "ObservationOperatorType is", ObservationOperatorType
+ logging.debug("CREATE ObservationOperator is set")
+ logging.debug("CREATE ObservationOperatorType is %s"%ObservationOperatorType)
assim_study.setObservationOperatorType("Matrix", ObservationOperatorType)
assim_study.setObservationOperator("Matrix", ObservationOperator)
ObservationOperatorOk = 1
except NameError:
pass
else:
- #print "ObservationOperatorDirect is", ObservationOperatorDirect
+ logging.debug("CREATE ObservationOperatorDirect is %s"%ObservationOperatorDirect)
assim_study.setObservationOperatorType("Direct", "Function")
assim_study.setObservationOperator("Direct", ObservationOperatorDirect)
try:
except NameError:
pass
else:
- #print "ObservationOperatorTangent is", ObservationOperatorTangent
+ logging.debug("CREATE ObservationOperatorTangent is %s"%ObservationOperatorTangent)
assim_study.setObservationOperatorType("Tangent", "Function")
assim_study.setObservationOperator("Tangent", ObservationOperatorTangent)
try:
except NameError:
pass
else:
- #print "ObservationOperatorAdjoint is", ObservationOperatorAdjoint
+ logging.debug("CREATE ObservationOperatorAdjoint is %s"%ObservationOperatorAdjoint)
assim_study.setObservationOperatorType("Adjoint", "Function")
assim_study.setObservationOperator("Adjoint", ObservationOperatorAdjoint)
+# EvolutionModel
+EvolutionModelOk = 0
+try:
+ EvolutionModel
+except NameError:
+ pass
+else:
+ logging.debug("CREATE EvolutionModel is set")
+ logging.debug("CREATE EvolutionModelType is %s"%EvolutionModelType)
+ assim_study.setEvolutionModelType("Matrix", EvolutionModelType)
+ assim_study.setEvolutionModel("Matrix", EvolutionModel)
+ EvolutionModelOk = 1
+
+if EvolutionModelOk == 0:
+ try:
+ EvolutionModelDirect
+ except NameError:
+ pass
+ else:
+ logging.debug("CREATE EvolutionModelDirect is %s"%EvolutionModelDirect)
+ assim_study.setEvolutionModelType("Direct", "Function")
+ assim_study.setEvolutionModel("Direct", EvolutionModelDirect)
+ try:
+ EvolutionModelTangent
+ except NameError:
+ pass
+ else:
+ logging.debug("CREATE EvolutionModelTangent is %s"%EvolutionModelTangent)
+ assim_study.setEvolutionModelType("Tangent", "Function")
+ assim_study.setEvolutionModel("Tangent", EvolutionModelTangent)
+ try:
+ EvolutionModelAdjoint
+ except NameError:
+ pass
+ else:
+ logging.debug("CREATE EvolutionModelAdjoint is %s"%EvolutionModelAdjoint)
+ assim_study.setEvolutionModelType("Adjoint", "Function")
+ assim_study.setEvolutionModel("Adjoint", EvolutionModelAdjoint)
+
+# Variables
+for name, size in zip(InputVariablesNames, InputVariablesSizes):
+ assim_study.setInputVariable(name, size)
+for name, size in zip(OutputVariablesNames, OutputVariablesSizes):
+ assim_study.setOutputVariable(name, size)
+if has_observers:
+ logging.debug("CREATE Observers keys are %s"%observers.keys())
+ # Adding observers to the study
+ for observer_name in observers.keys():
+ scheduler = ""
+ info = ""
+ number = str(observers[observer_name]["number"])
+ if "scheduler" in observers[observer_name].keys():
+ scheduler = observers[observer_name]["scheduler"]
+ if "info" in observers[observer_name].keys():
+ info = observers[observer_name]["info"]
+ assim_study.addObserver(observer_name, scheduler, info, number)
Study = assim_study
]]>
<inport name="Name" type="string"/>
<inport name="Algorithm" type="string"/>
<inport name="Debug" type="bool"/>
+ <inport name="InputVariablesNames" type="stringvec"/>
+ <inport name="InputVariablesSizes" type="intvec"/>
+ <inport name="OutputVariablesNames" type="stringvec"/>
+ <inport name="OutputVariablesSizes" type="intvec"/>
+ <inport name="has_observers" type="bool"/>
+ <inport name="observers" type="pyobj"/>
<outport name="Study" type="pyobj"/>
</inline>
<inline name="CreateNumpyMatrixFromString">
<script><code><![CDATA[
-print "Entering in CreateNumpyMatrixFromString"
-import numpy
+import numpy, logging
+logging.debug("CREATE Entering in CreateNumpyMatrixFromString")
matrix = numpy.matrix(matrix_in_string)
type = "Matrix"
-print "Matrix is", matrix
+logging.debug("CREATE Matrix is %s"%matrix)
]]></code></script>
<inport name="matrix_in_string" type="string"/>
<outport name="matrix" type="pyobj"/>
<outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
</inline>
<inline name="CreateNumpyMatrixFromScript">
<script><code><![CDATA[
-print "Entering in CreateNumpyMatrixFromScript"
-execfile(script)
+import logging
+logging.debug("CREATE Entering in CreateNumpyMatrixFromScript")
type = "Matrix"
+
+# Get file path and filename
+import sys
+import os
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
+
+# Import script
+__import__(module_name)
+user_script_module = sys.modules[module_name]
+
+# Get Data from script
]]></code></script>
<inport name="script" type="string"/>
<outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
</inline>
<inline name="CreateNumpyVectorFromString">
<script><code><![CDATA[
-print "Entering in CreateNumpyVectorFromString"
-import numpy
+import numpy, logging
+logging.debug("CREATE Entering in CreateNumpyVectorFromString")
vector = numpy.matrix(vector_in_string)
type = "Vector"
-print "Vector is", vector
+logging.debug("Vector is %s"%vector)
]]></code></script>
<inport name="vector_in_string" type="string"/>
<outport name="vector" type="pyobj"/>
<outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
</inline>
<inline name="CreateNumpyVectorFromScript">
<script><code><![CDATA[
-print "Entering in CreateNumpyVectorFromScript"
-execfile(script)
+import logging
+logging.debug("CREATE Entering in CreateNumpyVectorFromScript")
type = "Vector"
+
+# Get file path and filename
+import sys
+import os
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
+
+# Import script
+__import__(module_name)
+user_script_module = sys.modules[module_name]
+
+# Get Data from script
]]></code></script>
<inport name="script" type="string"/>
<outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
+ </inline>
+
+ <inline name="CreateNumpyVectorSerieFromString">
+ <script><code><![CDATA[
+import numpy, logging
+logging.debug("CREATE Entering in CreateNumpyVectorSerieFromString")
+vector_in_list = eval(str(vector_in_string),{},{})
+vector = numpy.matrix(vector_in_list)
+type = "VectorSerie"
+logging.debug("VectorSerie is %s"%vector)
+]]></code></script>
+ <inport name="vector_in_string" type="string"/>
+ <outport name="vector" type="pyobj"/>
+ <outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
+ </inline>
+
+ <inline name="CreateNumpyVectorSerieFromScript">
+ <script><code><![CDATA[
+import logging
+logging.debug("CREATE Entering in CreateNumpyVectorSerieFromScript")
+type = "VectorSerie"
+
+# Get file path and filename
+import sys
+import os
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
+
+# Import script
+__import__(module_name)
+user_script_module = sys.modules[module_name]
+
+# Get Data from script
+]]></code></script>
+ <inport name="script" type="string"/>
+ <outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
</inline>
<inline name="SimpleExecuteDirectAlgorithm">
<script><code><![CDATA[
-print "Entering in SimpleExecuteDirectAlgorithm"
+import logging
+logging.debug("EXECUTE Entering in SimpleExecuteDirectAlgorithm")
from daYacsIntegration.daStudy import *
ADD = Study.getAssimilationStudy()
ADD.analyze()
<inline name="SimpleUserAnalysis">
<script><code><![CDATA[
#-*-coding:iso-8859-1-*-
-print "Entering in SimpleUserAnalysis"
+import logging
+logging.debug("TERMINATE Entering in SimpleUserAnalysis")
from daYacsIntegration.daStudy import *
ADD = Study.getAssimilationStudy()
# User code is below
<inline name="FakeOptimizerLoopNode">
<script><code><![CDATA[
-print "Entering in FakeOptimizerLoopNode"
+import logging
+logging.debug("EXECUTE Entering in FakeOptimizerLoopNode")
result = None
]]></code></script>
<inport name="computation" type="SALOME_TYPES/ParametricInput"/>
- <outport name="result" type="pyobj"/>
+ <outport name="result" type="SALOME_TYPES/ParametricOutput"/>
</inline>
<inline name="CreateDictFromScript">
<script><code><![CDATA[
-print "Entering in CreateDictFromScript"
-execfile(script)
+import logging
+logging.debug("CREATE Entering in CreateDictFromScript")
+
+# Get file path and filename
+import sys
+import os
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
+
+# Import script
+__import__(module_name)
+user_script_module = sys.modules[module_name]
+
+# Get Data from script
]]></code></script>
<inport name="script" type="string"/>
</inline>
<inline name="UserDataInitFromScript">
<script><code><![CDATA[
-print "Entering in UserDataInitFromScript"
-execfile(script)
+import logging
+logging.debug("CREATE Entering in UserDataInitFromScript")
+
+# Get file path and filename
+import sys
+import os
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
+
+# Import script
+__import__(module_name)
+user_script_module = sys.modules[module_name]
+
+# Get Data from script
]]></code></script>
<inport name="script" type="string"/>
<outport name="init_data" type="pyobj"/>
</inline>
+ <inline name="ReadForSwitchNode">
+ <script><code><![CDATA[
+import logging
+logging.debug("CREATE Entering in ReadForSwitchNode")
+logging.debug(" with input data : "+str(data["specificParameters"]))
+switch_value = -1
+for param in data["specificParameters"]:
+ if param["name"] == "switch_value":
+ switch_value = int(param["value"])
+logging.debug(" switching to value : "+str(switch_value))
+]]></code></script>
+ <inport name="data" type="SALOME_TYPES/ParametricInput"/>
+ <outport name="data" type="SALOME_TYPES/ParametricInput"/>
+ <outport name="switch_value" type="int"/>
+ </inline>
+
+ <inline name="ExtractDataNode">
+ <script><code><![CDATA[
+import logging
+logging.debug("TERMINATE Entering in ExtractDataNode")
+import cPickle
+from daCore.AssimilationStudy import AssimilationStudy
+var = None
+info = None
+for param in data["specificParameters"]:
+ if param["name"] == "var":
+ var = cPickle.loads(param["value"])
+ if param["name"] == "info":
+ info = param["value"]
+]]></code></script>
+ <inport name="data" type="SALOME_TYPES/ParametricInput"/>
+ <outport name="var" type="pyobj"/>
+ <outport name="info" type="pyobj"/>
+ </inline>
+
+ <inline name="ObservationNodeString">
+ <script><code><![CDATA[
+#print "Entering in Observation"
+
+]]></code></script>
+ <inport name="var" type="pyobj"/>
+ <inport name="info" type="pyobj"/>
+ </inline>
+
+ <inline name="ObservationNodeFile">
+ <script><code><![CDATA[
+#print "Entering in Observation"
+execfile(script)
+
+]]></code></script>
+ <inport name="var" type="pyobj"/>
+ <inport name="info" type="pyobj"/>
+ <inport name="script" type="string"/>
+ </inline>
+
+ <inline name="EndObservationNode">
+ <script><code><![CDATA[
+# Create a fake output object.
+# An observer is always successful.
+output = {}
+output["outputValues"] = [[[[]]]]
+output["specificOutputInfos"] = []
+output["returnCode"] = 0
+output["errorMessage"] = ""
+]]></code></script>
+ <outport name="output" type="SALOME_TYPES/ParametricOutput"/>
+ </inline>
+
+ <inline name="SetObserversNode">
+ <script><code><![CDATA[
+#print "Setting observers"
+]]></code></script>
+ <outport name="has_observers" type="bool"/>
+ <outport name="observers" type="pyobj"/>
+ </inline>
</proc>
