<?xml version='1.0' encoding='iso-8859-1' ?>
<!--
- Copyright (C) 2010-2011 EDF R&D
+ Copyright (C) 2008-2017 EDF R&D
+
+ This file is part of SALOME ADAO module
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
- Author: Andre Ribes, andre.ribes@edf.fr, EDF R&D
+ Author: Jean-Philippe Argaud, jean-philippe.argaud@edf.fr, EDF R&D
-->
<proc>
print "Entering in the assimilation study"
print "Name is set to........:", Name
print "Algorithm is set to...:", Algorithm
-print "Debug is set to.......:", Debug
-
-# Create Assimilation study
-from daYacsIntegration.daStudy import *
-assim_study = daStudy(Name, Algorithm, Debug)
-# Algorithm parameters
try:
- AlgorithmParameters
-except NameError:
- pass
-else:
- assim_study.setAlgorithmParameters(AlgorithmParameters)
-
-# Data
-# print "Data entered are:"
+ # Create Assimilation study
+ from daYacsIntegration.daStudy import *
+ assim_study = daStudy(Name, Algorithm, Debug)
+
+ logging.debug("CREATE Data entered are:")
+
+ # Algorithm parameters
+ if "AlgorithmParameters" in locals():
+ logging.debug("CREATE AlgorithmParameters is %s"%AlgorithmParameters)
+ assim_study.setAlgorithmParameters(AlgorithmParameters)
+
+ # Background
+ if "Background" in locals():
+ logging.debug("CREATE Background is set")
+ logging.debug("CREATE BackgroundType is %s"%BackgroundType)
+ logging.debug("CREATE BackgroundStored is %s"%BackgroundStored)
+ assim_study.setBackgroundType(BackgroundType)
+ assim_study.setBackgroundStored(BackgroundStored)
+ assim_study.setBackground(Background)
+
+ # CheckingPoint
+ if "CheckingPoint" in locals():
+ logging.debug("CREATE CheckingPoint is set")
+ logging.debug("CREATE CheckingPointType is %s"%CheckingPointType)
+ logging.debug("CREATE CheckingPointStored is %s"%CheckingPointStored)
+ assim_study.setCheckingPointType(CheckingPointType)
+ assim_study.setCheckingPointStored(CheckingPointStored)
+ assim_study.setCheckingPoint(CheckingPoint)
+
+ # ControlInput
+ if "ControlInput" in locals():
+ logging.debug("CREATE ControlInput is set")
+ logging.debug("CREATE ControlInputType is %s"%ControlInputType)
+ logging.debug("CREATE ControlInputStored is %s"%ControlInputStored)
+ assim_study.setControlInputType(ControlInputType)
+ assim_study.setControlInputStored(ControlInputStored)
+ assim_study.setControlInput(ControlInput)
+
+ # Observation
+ if "Observation" in locals():
+ logging.debug("CREATE Observation is set")
+ logging.debug("CREATE ObservationType is %s"%ObservationType)
+ logging.debug("CREATE ObservationStored is %s"%ObservationStored)
+ assim_study.setObservationType(ObservationType)
+ assim_study.setObservationStored(ObservationStored)
+ assim_study.setObservation(Observation)
+
+ # BackgroundError
+ if "BackgroundError" in locals():
+ logging.debug("CREATE BackgroundError is set")
+ logging.debug("CREATE BackgroundErrorType is %s"%BackgroundErrorType)
+ logging.debug("CREATE BackgroundErrorStored is %s"%BackgroundErrorStored)
+ assim_study.setBackgroundErrorType(BackgroundErrorType)
+ assim_study.setBackgroundErrorStored(BackgroundErrorStored)
+ assim_study.setBackgroundError(BackgroundError)
+
+ # ObservationError
+ if "ObservationError" in locals():
+ logging.debug("CREATE ObservationError is set")
+ logging.debug("CREATE ObservationErrorType is %s"%ObservationErrorType)
+ logging.debug("CREATE ObservationErrorStored is %s"%ObservationErrorStored)
+ assim_study.setObservationErrorType(ObservationErrorType)
+ assim_study.setObservationErrorStored(ObservationErrorStored)
+ assim_study.setObservationError(ObservationError)
+
+ # EvolutionError
+ if "EvolutionError" in locals():
+ logging.debug("CREATE EvolutionError is set")
+ logging.debug("CREATE EvolutionErrorType is %s"%EvolutionErrorType)
+ logging.debug("CREATE EvolutionErrorStored is %s"%EvolutionErrorStored)
+ assim_study.setEvolutionErrorType(EvolutionErrorType)
+ assim_study.setEvolutionErrorStored(EvolutionErrorStored)
+ assim_study.setEvolutionError(EvolutionError)
+
+ # ObservationOperator
+ ObservationOperatorOk = 0
+ if "ObservationOperator" in locals():
+ logging.debug("CREATE ObservationOperator is set")
+ logging.debug("CREATE ObservationOperatorType is %s"%ObservationOperatorType)
+ assim_study.setObservationOperatorType("Matrix", ObservationOperatorType)
+ assim_study.setObservationOperator("Matrix", ObservationOperator)
+ ObservationOperatorOk = 1
+
+ if ObservationOperatorOk == 0:
+ if "ObservationOperatorDirect" in locals():
+ logging.debug("CREATE ObservationOperatorDirect is %s"%ObservationOperatorDirect)
+ assim_study.setObservationOperatorType("Direct", "Function")
+ assim_study.setObservationOperator("Direct", ObservationOperatorDirect)
+ if "ObservationOperatorTangent" in locals():
+ logging.debug("CREATE ObservationOperatorTangent is %s"%ObservationOperatorTangent)
+ assim_study.setObservationOperatorType("Tangent", "Function")
+ assim_study.setObservationOperator("Tangent", ObservationOperatorTangent)
+ if "ObservationOperatorAdjoint" in locals():
+ logging.debug("CREATE ObservationOperatorAdjoint is %s"%ObservationOperatorAdjoint)
+ assim_study.setObservationOperatorType("Adjoint", "Function")
+ assim_study.setObservationOperator("Adjoint", ObservationOperatorAdjoint)
+
+ # EvolutionModel
+ EvolutionModelOk = 0
+ if "EvolutionModel" in locals():
+ logging.debug("CREATE EvolutionModel is set")
+ logging.debug("CREATE EvolutionModelType is %s"%EvolutionModelType)
+ assim_study.setEvolutionModelType("Matrix", EvolutionModelType)
+ assim_study.setEvolutionModel("Matrix", EvolutionModel)
+ EvolutionModelOk = 1
+
+ if EvolutionModelOk == 0:
+ if "EvolutionModelDirect" in locals():
+ logging.debug("CREATE EvolutionModelDirect is %s"%EvolutionModelDirect)
+ assim_study.setEvolutionModelType("Direct", "Function")
+ assim_study.setEvolutionModel("Direct", EvolutionModelDirect)
+ if "EvolutionModelTangent" in locals():
+ logging.debug("CREATE EvolutionModelTangent is %s"%EvolutionModelTangent)
+ assim_study.setEvolutionModelType("Tangent", "Function")
+ assim_study.setEvolutionModel("Tangent", EvolutionModelTangent)
+ if "EvolutionModelAdjoint" in locals():
+ logging.debug("CREATE EvolutionModelAdjoint is %s"%EvolutionModelAdjoint)
+ assim_study.setEvolutionModelType("Adjoint", "Function")
+ assim_study.setEvolutionModel("Adjoint", EvolutionModelAdjoint)
+
+ # Variables
+ for name, size in zip(InputVariablesNames, InputVariablesSizes):
+ assim_study.setInputVariable(name, size)
+ for name, size in zip(OutputVariablesNames, OutputVariablesSizes):
+ assim_study.setOutputVariable(name, size)
+
+ if has_observers:
+ logging.debug("CREATE Observers keys are %s"%observers.keys())
+ # Adding observers to the study
+ for observer_name in observers.keys():
+ scheduler = ""
+ info = ""
+ number = str(observers[observer_name]["number"])
+ if "scheduler" in observers[observer_name].keys():
+ scheduler = observers[observer_name]["scheduler"]
+ if "info" in observers[observer_name].keys():
+ info = observers[observer_name]["info"]
+ assim_study.addObserver(observer_name, scheduler, info, number)
+
+except Exception as e:
+ if isinstance(e, SyntaxError): msg = "at %s: %s"%(e.offset, e.text)
+ else: msg = ""
+ raise ValueError("during execution, the following error occurs:\n\n%s %s\n\nSee also the potential messages, which can show the origin of the above error, in the launching terminal."%(str(e),msg))
-# Background
-try:
- Background
-except NameError:
- pass
-else:
- logging.debug("CREATE Background is %s"%Background)
- logging.debug("CREATE BackgroundType is %s"%BackgroundType)
- assim_study.setBackgroundType(BackgroundType)
- assim_study.setBackground(Background)
-
-# CheckingPoint
-try:
- CheckingPoint
-except NameError:
- pass
-else:
- logging.debug("CREATE CheckingPoint is %s"%CheckingPoint)
- logging.debug("CREATE CheckingPointType is %s"%CheckingPointType)
- assim_study.setCheckingPointType(CheckingPointType)
- assim_study.setCheckingPoint(CheckingPoint)
-
-# BackgroundError
-try:
- BackgroundError
-except NameError:
- pass
-else:
- logging.debug("CREATE BackgroundError is %s"%BackgroundError)
- logging.debug("CREATE BackgroundErrorType is %s"%BackgroundErrorType)
- assim_study.setBackgroundError(BackgroundError)
-
-# Observation
-try:
- Observation
-except NameError:
- pass
-else:
- logging.debug("CREATE Observation is %s"%Observation)
- logging.debug("CREATE ObservationType is %s"%ObservationType)
- assim_study.setObservationType(ObservationType)
- assim_study.setObservation(Observation)
-
-# ObservationError
-try:
- ObservationError
-except NameError:
- pass
-else:
- logging.debug("CREATE ObservationError is %s"%ObservationError)
- logging.debug("CREATE ObservationErrorType is %s"%ObservationErrorType)
- assim_study.setObservationError(ObservationError)
-
-# ObservationOperator
-ObservationOperatorOk = 0
-try:
- ObservationOperator
-except NameError:
- pass
-else:
- logging.debug("CREATE ObservationOperator is %s"%ObservationOperator)
- logging.debug("CREATE ObservationOperatorType is %s"%ObservationOperatorType)
- assim_study.setObservationOperatorType("Matrix", ObservationOperatorType)
- assim_study.setObservationOperator("Matrix", ObservationOperator)
- ObservationOperatorOk = 1
-
-if ObservationOperatorOk == 0:
- try:
- ObservationOperatorDirect
- except NameError:
- pass
- else:
- logging.debug("CREATE ObservationOperatorDirect is %s"%ObservationOperatorDirect)
- assim_study.setObservationOperatorType("Direct", "Function")
- assim_study.setObservationOperator("Direct", ObservationOperatorDirect)
- try:
- ObservationOperatorTangent
- except NameError:
- pass
- else:
- logging.debug("CREATE ObservationOperatorTangent is %s"%ObservationOperatorTangent)
- assim_study.setObservationOperatorType("Tangent", "Function")
- assim_study.setObservationOperator("Tangent", ObservationOperatorTangent)
- try:
- ObservationOperatorAdjoint
- except NameError:
- pass
- else:
- logging.debug("CREATE ObservationOperatorAdjoint is %s"%ObservationOperatorAdjoint)
- assim_study.setObservationOperatorType("Adjoint", "Function")
- assim_study.setObservationOperator("Adjoint", ObservationOperatorAdjoint)
-
-# Variables
-for name, size in zip(InputVariablesNames, InputVariablesSizes):
- assim_study.setInputVariable(name, size)
-for name, size in zip(OutputVariablesNames, OutputVariablesSizes):
- assim_study.setOutputVariable(name, size)
-
-if has_observers:
- logging.debug("CREATE Observers is %s"%observers.keys())
- # Adding observers to the study
- for observer_name in observers.keys():
- scheduler = ""
- info = ""
- number = str(observers[observer_name]["number"])
- if "scheduler" in observers[observer_name].keys():
- scheduler = observers[observer_name]["scheduler"]
- if "info" in observers[observer_name].keys():
- info = observers[observer_name]["info"]
- assim_study.addObserver(observer_name, scheduler, info, number)
Study = assim_study
]]>
<inport name="matrix_in_string" type="string"/>
<outport name="matrix" type="pyobj"/>
<outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
+ </inline>
+
+ <inline name="CreateNumpyScalarSparseMatrixFromString">
+ <script><code><![CDATA[
+import numpy, logging
+logging.debug("CREATE Entering in CreateNumpyScalarSparseMatrixFromString")
+matrix = numpy.matrix(matrix_in_string)
+type = "ScalarSparseMatrix"
+logging.debug("CREATE ScalarSparseMatrix is %s"%matrix)
+]]></code></script>
+ <inport name="matrix_in_string" type="string"/>
+ <outport name="matrix" type="pyobj"/>
+ <outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
+ </inline>
+
+ <inline name="CreateNumpyDiagonalSparseMatrixFromString">
+ <script><code><![CDATA[
+import numpy, logging
+logging.debug("CREATE Entering in CreateNumpyDiagonalSparseMatrixFromString")
+matrix = numpy.matrix(matrix_in_string)
+type = "DiagonalSparseMatrix"
+logging.debug("CREATE DiagonalSparseMatrix is %s"%matrix)
+]]></code></script>
+ <inport name="matrix_in_string" type="string"/>
+ <outport name="matrix" type="pyobj"/>
+ <outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
</inline>
<inline name="CreateNumpyMatrixFromScript">
<script><code><![CDATA[
-import logging
+import logging, sys, os
logging.debug("CREATE Entering in CreateNumpyMatrixFromScript")
type = "Matrix"
# Get file path and filename
-import sys
-import os
+try:
+ if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+ sys.path.insert(0,studydir)
+except:
+ pass
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
+
+]]></code></script>
+ <inport name="script" type="string"/>
+ <outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
+ </inline>
+
+ <inline name="CreateNumpyScalarSparseMatrixFromScript">
+ <script><code><![CDATA[
+import logging, sys, os
+logging.debug("CREATE Entering in CreateNumpyScalarSparseMatrixFromScript")
+type = "ScalarSparseMatrix"
+
+# Get file path and filename
+try:
+ if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+ sys.path.insert(0,studydir)
+except:
+ pass
filepath = os.path.dirname(script)
filename = os.path.basename(script)
module_name = os.path.splitext(filename)[0]
-sys.path.insert(0,filepath)
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
+
+]]></code></script>
+ <inport name="script" type="string"/>
+ <outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
+ </inline>
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
+ <inline name="CreateNumpyDiagonalSparseMatrixFromScript">
+ <script><code><![CDATA[
+import logging, sys, os
+logging.debug("CREATE Entering in CreateNumpyDiagonalSparseMatrixFromScript")
+type = "DiagonalSparseMatrix"
+
+# Get file path and filename
+try:
+ if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+ sys.path.insert(0,studydir)
+except:
+ pass
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
-# Get Data from script
]]></code></script>
<inport name="script" type="string"/>
<outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
</inline>
<inline name="CreateNumpyVectorFromString">
<inport name="vector_in_string" type="string"/>
<outport name="vector" type="pyobj"/>
<outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
</inline>
<inline name="CreateNumpyVectorFromScript">
<script><code><![CDATA[
-import logging
+import logging, sys, os
logging.debug("CREATE Entering in CreateNumpyVectorFromScript")
type = "Vector"
# Get file path and filename
-import sys
-import os
+try:
+ if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+ sys.path.insert(0,studydir)
+except:
+ pass
filepath = os.path.dirname(script)
filename = os.path.basename(script)
module_name = os.path.splitext(filename)[0]
-sys.path.insert(0,filepath)
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
+
+]]></code></script>
+ <inport name="script" type="string"/>
+ <outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
+ </inline>
+
+ <inline name="CreateNumpyVectorSerieFromString">
+ <script><code><![CDATA[
+import numpy, logging
+logging.debug("CREATE Entering in CreateNumpyVectorSerieFromString")
+vector_in_list = eval(str(vector_in_string),{},{})
+vector = numpy.matrix(vector_in_list)
+type = "VectorSerie"
+logging.debug("VectorSerie is %s"%vector)
+]]></code></script>
+ <inport name="vector_in_string" type="string"/>
+ <outport name="vector" type="pyobj"/>
+ <outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
+ </inline>
+
+ <inline name="CreateNumpyVectorSerieFromScript">
+ <script><code><![CDATA[
+import logging, sys, os
+logging.debug("CREATE Entering in CreateNumpyVectorSerieFromScript")
+type = "VectorSerie"
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
+# Get file path and filename
+try:
+ if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+ sys.path.insert(0,studydir)
+except:
+ pass
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
-# Get Data from script
]]></code></script>
<inport name="script" type="string"/>
<outport name="type" type="string"/>
+ <outport name="stored" type="bool"/>
</inline>
<inline name="SimpleExecuteDirectAlgorithm">
import logging
logging.debug("EXECUTE Entering in SimpleExecuteDirectAlgorithm")
from daYacsIntegration.daStudy import *
-ADD = Study.getAssimilationStudy()
+ADD = Study.getResults()
ADD.analyze()
]]></code></script>
<inport name="Study" type="pyobj"/>
#-*-coding:iso-8859-1-*-
import logging
logging.debug("TERMINATE Entering in SimpleUserAnalysis")
-from daYacsIntegration.daStudy import *
-ADD = Study.getAssimilationStudy()
+ADD = Study.getResults()
# User code is below
]]></code></script>
<outport name="result" type="SALOME_TYPES/ParametricOutput"/>
</inline>
+ <inline name="CreateDictFromString">
+ <script><code><![CDATA[
+import logging, sys, os
+logging.debug("CREATE Entering in CreateDictFromString")
+dico = eval(dict_in_string)
+]]></code></script>
+ <inport name="dict_in_string" type="string"/>
+ </inline>
+
<inline name="CreateDictFromScript">
<script><code><![CDATA[
-import logging
+import logging, sys, os
logging.debug("CREATE Entering in CreateDictFromScript")
# Get file path and filename
-import sys
-import os
+try:
+ if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+ sys.path.insert(0,studydir)
+except:
+ pass
filepath = os.path.dirname(script)
filename = os.path.basename(script)
module_name = os.path.splitext(filename)[0]
-sys.path.insert(0,filepath)
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
-
-# Get Data from script
]]></code></script>
<inport name="script" type="string"/>
</inline>
<inline name="UserDataInitFromScript">
<script><code><![CDATA[
-import logging
+import logging, sys, os
logging.debug("CREATE Entering in UserDataInitFromScript")
# Get file path and filename
-import sys
-import os
+try:
+ if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+ sys.path.insert(0,studydir)
+except:
+ pass
filepath = os.path.dirname(script)
filename = os.path.basename(script)
module_name = os.path.splitext(filename)[0]
-sys.path.insert(0,filepath)
-
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+ sys.path.insert(0,filepath)
-# Get Data from script
]]></code></script>
<inport name="script" type="string"/>
<outport name="init_data" type="pyobj"/>
<script><code><![CDATA[
import logging
logging.debug("CREATE Entering in ReadForSwitchNode")
+logging.debug(" with input data : "+str(data["specificParameters"]))
switch_value = -1
for param in data["specificParameters"]:
if param["name"] == "switch_value":
switch_value = int(param["value"])
+logging.debug(" switching to value : "+str(switch_value))
]]></code></script>
<inport name="data" type="SALOME_TYPES/ParametricInput"/>
<outport name="data" type="SALOME_TYPES/ParametricInput"/>
<script><code><![CDATA[
import logging
logging.debug("TERMINATE Entering in ExtractDataNode")
-import pickle
+import cPickle
from daCore.AssimilationStudy import AssimilationStudy
var = None
info = None
for param in data["specificParameters"]:
if param["name"] == "var":
- var = pickle.loads(param["value"])
+ var = cPickle.loads(param["value"])
if param["name"] == "info":
info = param["value"]
]]></code></script>
</inline>
<inline name="ObservationNodeString">
- <script><code><![CDATA[
-#print "Entering in Observation"
-
-]]></code></script>
+ <script><code><![CDATA[]]></code></script>
<inport name="var" type="pyobj"/>
<inport name="info" type="pyobj"/>
</inline>
<inline name="ObservationNodeFile">
- <script><code><![CDATA[
-#print "Entering in Observation"
-execfile(script)
-
-]]></code></script>
+ <script><code><![CDATA[execfile(script)]]></code></script>
<inport name="var" type="pyobj"/>
<inport name="info" type="pyobj"/>
<inport name="script" type="string"/>
